Citrus Sinensis ID: 022304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHcccccccccEEEcccccccEEEEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccEEEcccccccEEEcccccEEEEcccccccccccHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHccccHHHHHHHHHHccccEEEEcccccccccccEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccEEcccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccEEEEccccccccHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtvaalsddpiREWILSegkathitkicpvgggcinlasrygtdagsffvktnrsigpsmfegealglgamyetrtiraprpfkvgalptggsYIIMEFIefgssrgnqsVFGKKLAEMHKagksskgfgfdvdntigstpqinkwTSNWIEFYAEHRLGYQLKLALdqygdstiyqRGHRLMKNlaplfegvnvepcllhgdlwsgnissdkngepvildpacyyghneaefgmswcagfggsfynsyfevmpkqpgfekrrDLYMLYHYLNHYnlfgsgyrssaLSIIDDYLRMLKV
Flexible Loop (DISEMBL)
mtvaalsddpireWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV
Low Complexity Region (SEG)
MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDlymlyhylnhynlFGSGYRSSALSIIDDYLRMLKV
Disordered region (IsUnstruct)
**********IREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS**********************GFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRM***
Disordered Region (DISOPRED)
************EWILSEGK******I*PVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV
Disordered Region (DISEMBL)
********DPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV
Disordered Region (DISPRO)
MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9LEW8	326	Protein-ribulosamine 3-ki	yes	no	1.0	0.917	0.822	1e-149
A2XBT1	342	Protein-ribulosamine 3-ki	N/A	no	0.993	0.868	0.781	1e-141
Q10SM2	342	Protein-ribulosamine 3-ki	yes	no	0.993	0.868	0.781	1e-141
Q8K274	309	Ketosamine-3-kinase OS=Mu	yes	no	0.866	0.838	0.410	1e-57
Q9HA64	309	Ketosamine-3-kinase OS=Ho	yes	no	0.882	0.854	0.4	1e-56
P74594	295	Uncharacterized protein s	N/A	no	0.899	0.911	0.434	6e-56
Q9ER35	309	Fructosamine-3-kinase OS=	no	no	0.882	0.854	0.4	2e-54
Q9H479	309	Fructosamine-3-kinase OS=	no	no	0.882	0.854	0.393	3e-53
Q9KRU5	288	Uncharacterized protein V	yes	no	0.899	0.934	0.361	1e-40
Q87PM1	288	Uncharacterized protein V	yes	no	0.849	0.881	0.370	3e-40

>sp|Q9LEW8|FN3KR_ARATH Protein-ribulosamine 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=At3g61080 PE=1 SV=2

 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/299 (82%), Positives = 271/299 (90%)

Query: 1   MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSM 60
           + +AA+S+DPIREWIL+EGKAT ITKI  VGGGCINLAS Y TDAGSFFVKTNRSIGP+M
Sbjct: 28  VAMAAMSEDPIREWILTEGKATQITKIGSVGGGCINLASHYQTDAGSFFVKTNRSIGPAM 87

Query: 61  FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH 120
           FEGEALGL AMYETRTIR P P K G LPTGGSYIIMEFI+FG SRGNQ+  G+KLAEMH
Sbjct: 88  FEGEALGLEAMYETRTIRVPNPHKAGELPTGGSYIIMEFIDFGGSRGNQAELGRKLAEMH 147

Query: 121 KAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH 180
           KAGK+SKGFGF+VDNTIGSTPQIN W+S+WIEFY E RLGYQLKLA DQYGDS IYQ+GH
Sbjct: 148 KAGKTSKGFGFEVDNTIGSTPQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGH 207

Query: 181 RLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG 240
            L++N+APLFE V +EPCLLHGDLWSGNI+ DKN EPVILDPACYYGHNEA+FGMSWCAG
Sbjct: 208 TLIQNMAPLFENVVIEPCLLHGDLWSGNIAYDKNNEPVILDPACYYGHNEADFGMSWCAG 267

Query: 241 FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           FG SFYN+YF+VMPKQ G+EKRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLRMLK 
Sbjct: 268 FGESFYNAYFKVMPKQAGYEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLKA 326

Initiates a process leading to the deglycation of proteins. Phosphorylates low-molecular-mass and protein-bound erythrulosamines and ribulosamines, but not fructosamines or psicosamines, on the third carbon of the sugar moiety. Protein-bound erythrulosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 7EC: 2

>sp|A2XBT1|FN3KR_ORYSI Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_09747 PE=3 SV=1

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 232/297 (78%), Positives = 263/297 (88%)

Query: 3   VAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFE 62
           +AAL +DPIR+WIL+EGKAT IT +  +GGGCIN A  Y TDAGSFFVKTN  IGPSMFE
Sbjct: 46  MAALGEDPIRQWILTEGKATKITGVSSIGGGCINSAQCYKTDAGSFFVKTNGRIGPSMFE 105

Query: 63  GEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKA 122
           GEALGL AMY+T +IR P P+KVG+LPTGGS+IIMEFIEFG SRG+QS  G+KLAEMHKA
Sbjct: 106 GEALGLKAMYDTNSIRVPLPYKVGSLPTGGSFIIMEFIEFGCSRGDQSALGRKLAEMHKA 165

Query: 123 GKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRL 182
            KS KG+GF VDNTIGSTPQIN WT++WIEFY++HRLG+QL+L   ++GDS IY +G RL
Sbjct: 166 AKSDKGYGFYVDNTIGSTPQINTWTADWIEFYSKHRLGFQLELITQRFGDSAIYDKGQRL 225

Query: 183 MKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFG 242
           ++N+ PLFEG  +EPCLLHGDLWSGNISSD +GEPVILDPACYYGHNEAEFGMSWCAGFG
Sbjct: 226 IENMHPLFEGAVMEPCLLHGDLWSGNISSDTDGEPVILDPACYYGHNEAEFGMSWCAGFG 285

Query: 243 GSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           G FY+SYFEVMPKQPGFEKRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLRMLK 
Sbjct: 286 GEFYSSYFEVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLKA 342

Phosphorylates low-molecular-mass and protein-bound erythrulosamines and ribulosamines, but not fructosamines or psicosamines, on the third carbon of the sugar moiety. Protein-bound erythrulosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions. Thus phosphorylation leads to deglycation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 2

>sp|Q10SM2|FN3KR_ORYSJ Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0117800 PE=2 SV=1

 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 232/297 (78%), Positives = 262/297 (88%)

Query: 3   VAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFE 62
           +AAL +DPIR+WIL+EGKAT IT +  +GGGCIN A  Y TDA SFFVKTN  IGPSMFE
Sbjct: 46  MAALGEDPIRQWILTEGKATKITGVSSIGGGCINSAQCYKTDASSFFVKTNGRIGPSMFE 105

Query: 63  GEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKA 122
           GEALGL AMY+T +IR P P+KVG+LPTGGS+IIMEFIEFG SRG+QS  G+KLAEMHKA
Sbjct: 106 GEALGLKAMYDTNSIRVPLPYKVGSLPTGGSFIIMEFIEFGCSRGDQSALGRKLAEMHKA 165

Query: 123 GKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRL 182
            KS KG+GF VDNTIGSTPQIN WT++WIEFY++HRLG+QL+L   ++GDS IY +G RL
Sbjct: 166 AKSDKGYGFYVDNTIGSTPQINTWTADWIEFYSKHRLGFQLELITQRFGDSAIYDKGQRL 225

Query: 183 MKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFG 242
           ++N+ PLFEG  +EPCLLHGDLWSGNISSD NGEPVILDPACYYGHNEAEFGMSWCAGFG
Sbjct: 226 IENMHPLFEGAVMEPCLLHGDLWSGNISSDTNGEPVILDPACYYGHNEAEFGMSWCAGFG 285

Query: 243 GSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           G FY+SYFEVMPKQPGFEKRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLRMLK 
Sbjct: 286 GEFYSSYFEVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLKA 342

Phosphorylates low-molecular-mass and protein-bound erythrulosamines and ribulosamines, but not fructosamines or psicosamines, on the third carbon of the sugar moiety. Protein-bound erythrulosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions. Thus phosphorylation leads to deglycation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 2

>sp|Q8K274|KT3K_MOUSE Ketosamine-3-kinase OS=Mus musculus GN=Fn3krp PE=2 SV=2

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/285 (41%), Positives = 161/285 (56%), Gaps = 26/285 (9%)

Query: 31  GGGCINLASRYGTDAGSFFVKTN-RSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP 89
           GGGCI+    Y TD G  FVK N ++    MFEGE   L A+ +T T++ P+P KV   P
Sbjct: 21  GGGCISQGQSYDTDKGRVFVKVNSKAEARRMFEGEMASLTAILKTGTVKVPKPIKVVDAP 80

Query: 90  TGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH------------KAGKSSKG--------- 128
            GGS ++ME ++      + +  G +LA++H            +AG   KG         
Sbjct: 81  GGGSMLVMEHLDMRYLSSHATKLGTQLADLHLENKRLGERLLKEAGTVGKGGEQAERQYV 140

Query: 129 --FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNL 186
             FGFDV    G  PQ+N W  NW+EFYA  R+  Q+ +   + GD    +    L   +
Sbjct: 141 DQFGFDVVTCCGYLPQVNDWQKNWVEFYARQRIQPQMDMVEKKSGDREALELWSALQLKI 200

Query: 187 APLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGSF 245
             LF  + + P LLHGDLW GN++ D +G P+I DPA +YGH+E E  ++    GF  SF
Sbjct: 201 PDLFRDLEIVPALLHGDLWGGNVAEDSSG-PIIFDPASFYGHSEYELAIAGMFGGFSSSF 259

Query: 246 YNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSII 290
           Y++Y   +PK PGFEKR  LY L+HYLNH+N FGSGYR S+L+I+
Sbjct: 260 YSAYHSKIPKTPGFEKRLQLYQLFHYLNHWNHFGSGYRGSSLNIM 304

Phosphorylates psicosamines and ribulosamines, but not fructosamines, on the third carbon of the sugar moiety. Protein-bound psicosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions. Thus phosphorylation leads to deglycation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q9HA64|KT3K_HUMAN Ketosamine-3-kinase OS=Homo sapiens GN=FN3KRP PE=1 SV=2

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 163/290 (56%), Gaps = 26/290 (8%)

Query: 31  GGGCINLASRYGTDAGSFFVKTN-RSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP 89
           GGGCI+    Y TD G  FVK N ++    MFEGE   L A+ +T T++ P+P KV   P
Sbjct: 21  GGGCISQGRSYDTDQGRVFVKVNPKAEARRMFEGEMASLTAILKTNTVKVPKPIKVLDAP 80

Query: 90  TGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH------------KAGKSSKG--------- 128
            GGS ++ME ++      + +  G +LA++H            +AG   +G         
Sbjct: 81  GGGSVLVMEHMDMRHLSSHAAKLGAQLADLHLDNKKLGEMRLKEAGTVGRGGGQEERPFV 140

Query: 129 --FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNL 186
             FGFDV    G  PQ+N W  +W+ FYA  R+  Q+ +   + GD    Q    L   +
Sbjct: 141 ARFGFDVVTCCGYLPQVNDWQEDWVVFYARQRIQPQMDMVEKESGDREALQLWSALQLKI 200

Query: 187 APLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGSF 245
             LF  + + P LLHGDLW GN++ D +G PVI DPA +YGH+E E  ++    GF  SF
Sbjct: 201 PDLFRDLEIIPALLHGDLWGGNVAEDSSG-PVIFDPASFYGHSEYELAIAGMFGGFSSSF 259

Query: 246 YNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLR 295
           Y++Y   +PK PGFEKR  LY L+HYLNH+N FGSGYR S+L+I+ + ++
Sbjct: 260 YSAYHGKIPKAPGFEKRLQLYQLFHYLNHWNHFGSGYRGSSLNIMRNLVK 309

Phosphorylates psicosamines and ribulosamines, but not fructosamines, on the third carbon of the sugar moiety. Protein-bound psicosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions. Thus phosphorylation leads to deglycation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P74594|Y1563_SYNY3 Uncharacterized protein slr1563 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1563 PE=3 SV=1

 Score =  218 bits (554), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/288 (43%), Positives = 174/288 (60%), Gaps = 19/288 (6%)

Query: 17  SEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRT 76
           + G+   I +   V GGCIN           +FVK N++    MF+ EALGL AM  T+T
Sbjct: 19  TTGQPFRIQERRSVSGGCINQGYCLVDGEQKYFVKLNQAQQWQMFQAEALGLEAMAATQT 78

Query: 77  IRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVF---GKKLAEMHKAGKSSKGFGFDV 133
           IR PRP   G+   G SY+++E++EFG  RGN   +   G+ LA +H+AG S++ FG+  
Sbjct: 79  IRVPRPICHGS-SAGHSYLVLEWLEFG--RGNHDSWYRMGQNLAALHQAGGSAQ-FGWQT 134

Query: 134 DNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGD----STIYQRGHRLMKNLAPL 189
           DNTIG+TPQ N WT +W +F+AEHRLGYQL LA  + G+    + +  +  +L+ +  P 
Sbjct: 135 DNTIGATPQPNPWTDSWADFFAEHRLGYQLALARRRAGNFPDPAVVVPKVKQLLGDRQP- 193

Query: 190 FEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWC-AGFGGSFYNS 248
                  P L+HGDLWSGN +    GEPVILDPA YYG  E +  M+    GF  +FY  
Sbjct: 194 ------TPALVHGDLWSGNGAILTTGEPVILDPATYYGDGEVDLAMTELFGGFPAAFYQG 247

Query: 249 YFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRM 296
           Y  + P +PG+++R+ LY LYH LNH+NLFG GY+  A  ++   LR+
Sbjct: 248 YHSISPAEPGYQQRKILYNLYHILNHFNLFGGGYQQQAQQMLKQCLRI 295

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9ER35|FN3K_MOUSE Fructosamine-3-kinase OS=Mus musculus GN=Fn3k PE=2 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 157/290 (54%), Gaps = 26/290 (8%)

Query: 31  GGGCINLASRYGTDAGSFFVKTNR-SIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP 89
           GGGCI+    Y TD+G  FVK NR +    MFEGE   L A+  T  +R P+P KV  LP
Sbjct: 21  GGGCISEGYAYYTDSGPVFVKVNRRTQARQMFEGEMASLEALRNTGLVRVPKPMKVIDLP 80

Query: 90  TGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH----------KAGKSSKG----------- 128
            GG+  +ME ++  S     S  G+++A++H          K  +++ G           
Sbjct: 81  GGGAVFVMEHLKMKSLSSQASKLGEQMADLHLYNQKLREKSKTRQNTVGCGAEGAEPQGV 140

Query: 129 --FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNL 186
             FGF      G  PQ+N+W  +W  F+  HRL  QL L    Y D    +   RL   +
Sbjct: 141 TKFGFHTVTCCGFIPQVNEWQEDWPTFFTRHRLQAQLDLIEKDYADRETQELWSRLQVKI 200

Query: 187 APLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGM-SWCAGFGGSF 245
             LF G+ + P LLHGDLWSGN++ D  G PVI DPA +YGH+E E  + S   GF  SF
Sbjct: 201 PDLFAGIEIVPALLHGDLWSGNVAEDDQG-PVIYDPASFYGHSEFELAIASMFGGFPRSF 259

Query: 246 YNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLR 295
           + +Y   +PK PGF+KR  LY L++YLNH+N FG  YRS +L ++   LR
Sbjct: 260 FTAYHRKIPKAPGFDKRLLLYQLFNYLNHWNHFGREYRSPSLGVMRKLLR 309

May initiate a process leading to the deglycation of fructoselysine and of glycated proteins. May play a role in the phosphorylation of 1-deoxy-1-morpholinofructose (DMF), fructoselysine, fructoseglycine, fructose and glycated lysozyme.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q9H479|FN3K_HUMAN Fructosamine-3-kinase OS=Homo sapiens GN=FN3K PE=1 SV=1

 Score =  208 bits (530), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/290 (39%), Positives = 155/290 (53%), Gaps = 26/290 (8%)

Query: 31  GGGCINLASRYGTDAGSFFVKTNR-SIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP 89
           G GCI+    Y TDAG  FVK NR +    MFEGE   L A+  T  +R PRP KV  LP
Sbjct: 21  GAGCISEGRAYDTDAGPVFVKVNRRTQARQMFEGEVASLEALRSTGLVRVPRPMKVIDLP 80

Query: 90  TGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH---------------KAGKSSKG------ 128
            GG+  +ME ++  S     S  G+++A++H                 G+  +G      
Sbjct: 81  GGGAAFVMEHLKMKSLSSQASKLGEQMADLHLYNQKLREKLKEEENTVGRRGEGAEPQYV 140

Query: 129 --FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNL 186
             FGF      G  PQ+N+W  +W  F+A HRL  QL L    Y D    +   RL   +
Sbjct: 141 DKFGFHTVTCCGFIPQVNEWQDDWPTFFARHRLQAQLDLIEKDYADREARELWSRLQVKI 200

Query: 187 APLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWC-AGFGGSF 245
             LF G+ + P LLHGDLWSGN++ D  G P+I DPA +YGH+E E  ++    GF  SF
Sbjct: 201 PDLFCGLEIVPALLHGDLWSGNVAEDDVG-PIIYDPASFYGHSEFELAIALMFGGFPRSF 259

Query: 246 YNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLR 295
           + +Y   +PK PGF++R  LY L++YLNH+N FG  YRS +L  +   L+
Sbjct: 260 FTAYHRKIPKAPGFDQRLLLYQLFNYLNHWNHFGREYRSPSLGTMRRLLK 309

May initiate a process leading to the deglycation of fructoselysine and of glycated proteins. May play a role in the phosphorylation of 1-deoxy-1-morpholinofructose (DMF), fructoselysine, fructoseglycine, fructose and glycated lysozyme.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q9KRU5|Y1539_VIBCH Uncharacterized protein VC_1539 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_1539 PE=3 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 150/288 (52%), Gaps = 19/288 (6%)

Query: 16  LSE--GKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYE 73
           LSE  GK  H+ +   V GG IN           +FVKTN+    + F  E   L  M E
Sbjct: 9   LSEQLGKDFHLVEKEKVHGGDINECFMVSDGIDRYFVKTNQREYLTKFTAEVENLRVMRE 68

Query: 74  TRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSV--FGKKLAEMHKAGKSSKGFGF 131
           + T++ P     G   T  +Y+++ ++        +    FG +LA +H+ G+  K FGF
Sbjct: 69  SNTVQVPEYILHGTSKTH-AYLVLNYLATKPLDDAERSYEFGVQLANLHRWGEQ-KEFGF 126

Query: 132 DVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMK----NLA 187
           D+DN IG+T Q N W   W  F+AE R+G+QL+L  ++  + T       ++K    N +
Sbjct: 127 DIDNYIGATVQPNPWHKKWALFFAEQRIGWQLQLMQEKGVNLTNINEFVEMVKTRLANHS 186

Query: 188 PLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGSFY 246
           P        P LLHGDLW GN+++  NG P+  DPACY+G  E +  ++ W  GF   F+
Sbjct: 187 P-------RPSLLHGDLWFGNVANIVNG-PLCFDPACYWGDRECDIALAEWFGGFQPEFF 238

Query: 247 NSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYL 294
             Y  V P   G+E+R+D+Y LYH LNHYN FG  Y   A  +I+  L
Sbjct: 239 QGYESVWPLDWGYEERKDIYNLYHVLNHYNQFGGHYLDEAQKLIEKIL 286

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

>sp|Q87PM1|Y1481_VIBPA Uncharacterized protein VP1481 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP1481 PE=3 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/281 (37%), Positives = 143/281 (50%), Gaps = 27/281 (9%)

Query: 23  HITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRP 82
            IT+   + GG I+ +         +FVK N       FE EA  L  + ET TI  P  
Sbjct: 18  QITEKVRLSGGDISESYMINDGEQRYFVKINDREFLHKFEVEAESLHLLRETSTIFVPEV 77

Query: 83  FKVGALPTGGSYIIMEFIEFG--SSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGST 140
             VG      ++II+ ++         N   FG++LA++H+ G+  K FGFD DN +GST
Sbjct: 78  VLVGK-TKNNAFIILNYLPTKPLDDPENSFKFGQQLAQLHQWGEQ-KEFGFDTDNYLGST 135

Query: 141 PQINKWTSNWIEFYAEHRLGYQLKLA---------LDQYGDSTIYQRGHRLMKNLAPLFE 191
            Q N+W   W  F+AE R+G+QL+L          +D + D        +L+ N  P   
Sbjct: 136 LQPNQWHKKWCMFFAEQRIGWQLQLLKEKGVTLVDIDDFIDVV-----KQLLANHTP--- 187

Query: 192 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWC-AGFGGSFYNSYF 250
               EP LLHGDLW+GN++    G P+  DPACY+G  E +  M+    GF   FY  Y 
Sbjct: 188 ----EPSLLHGDLWNGNVALTAFG-PICFDPACYWGDRECDIAMTELFGGFQPEFYQGYE 242

Query: 251 EVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIID 291
            VMP  PG+ +R+D+Y LYH LNH NLFG  Y   A   I+
Sbjct: 243 SVMPLLPGYHERKDIYNLYHILNHCNLFGGHYLEQAQLTIN 283

Vibrio parahaemolyticus (taxid: 670)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
147781802	298	hypothetical protein VITISV_011421 [Viti	0.993	0.996	0.875	1e-155
225453762	330	PREDICTED: protein-ribulosamine 3-kinase	0.996	0.903	0.869	1e-155
255541454	402	kinase, putative [Ricinus communis] gi|2	1.0	0.743	0.856	1e-154
224067842	296	predicted protein [Populus trichocarpa]	0.989	1.0	0.861	1e-153
356505144	332	PREDICTED: uncharacterized protein At3g6	0.986	0.888	0.844	1e-150
449432201	332	PREDICTED: protein-ribulosamine 3-kinase	1.0	0.900	0.822	1e-149
297817418	326	fructosamine kinase family protein [Arab	0.996	0.914	0.828	1e-148
22331896	326	protein kinase-like protein [Arabidopsis	1.0	0.917	0.822	1e-147
357114344	343	PREDICTED: uncharacterized protein At3g6	0.993	0.865	0.777	1e-141
8388624	318	putative protein [Arabidopsis thaliana]	0.973	0.915	0.809	1e-141

>gi|147781802|emb|CAN65444.1| hypothetical protein VITISV_011421 [Vitis vinifera]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/297 (87%), Positives = 277/297 (93%)

Query: 3   VAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFE 62
           VAAL +DPIREWILSEGKAT ITKI PVGGGCINLASRY TDAGSFFVKTNRSIGPSMFE
Sbjct: 2   VAALGEDPIREWILSEGKATQITKISPVGGGCINLASRYDTDAGSFFVKTNRSIGPSMFE 61

Query: 63  GEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKA 122
           GEALGLGAMYET++IR PRPFKVG LPTGGSYIIMEFIEFG SRG+Q+V G+KLAEMHKA
Sbjct: 62  GEALGLGAMYETKSIRVPRPFKVGPLPTGGSYIIMEFIEFGRSRGDQAVLGRKLAEMHKA 121

Query: 123 GKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRL 182
           GKS KGFGFDVDNTIGSTPQIN WTS+W++FYAEHRLGYQLKLALDQYGDSTIY +G +L
Sbjct: 122 GKSEKGFGFDVDNTIGSTPQINTWTSDWVKFYAEHRLGYQLKLALDQYGDSTIYAKGEKL 181

Query: 183 MKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFG 242
           MK L  LFE V +EPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFG
Sbjct: 182 MKILGRLFENVEIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFG 241

Query: 243 GSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           GSFYN+YFEVMPKQ GFEKRRD+YMLYHYLNHYNLFGSGYRSSA+SIIDDYLR+  +
Sbjct: 242 GSFYNAYFEVMPKQAGFEKRRDVYMLYHYLNHYNLFGSGYRSSAMSIIDDYLRIFNI 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453762|ref|XP_002274443.1| PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Vitis vinifera] gi|296089080|emb|CBI38783.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/298 (86%), Positives = 278/298 (93%)

Query: 2   TVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMF 61
            +AAL +DPIREWILSEGKAT IT+I PVGGGCINLASRY TDAGSFFVKTNRSIGPSMF
Sbjct: 33  VMAALGEDPIREWILSEGKATQITRISPVGGGCINLASRYDTDAGSFFVKTNRSIGPSMF 92

Query: 62  EGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHK 121
           EGEALGLGAMYET++IR PRPFKVG LPTGGSYIIMEFIEFG SRG+Q+V G+KLAEMHK
Sbjct: 93  EGEALGLGAMYETKSIRVPRPFKVGPLPTGGSYIIMEFIEFGRSRGDQAVLGRKLAEMHK 152

Query: 122 AGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHR 181
           AGKS KGFGFDVDNTIGSTPQIN WTS+W++FYAEHRLGYQLKLALDQYGDSTIY +G +
Sbjct: 153 AGKSEKGFGFDVDNTIGSTPQINTWTSDWVKFYAEHRLGYQLKLALDQYGDSTIYAKGEK 212

Query: 182 LMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGF 241
           LMKNL  LFE V +EPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGF
Sbjct: 213 LMKNLGRLFENVEIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGF 272

Query: 242 GGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           GGSFYN+YFEVMPKQ GFEKRRD+YMLYHYLNHYNLFGSGYRSSA+SIIDDYLR+  +
Sbjct: 273 GGSFYNAYFEVMPKQAGFEKRRDVYMLYHYLNHYNLFGSGYRSSAMSIIDDYLRIFNI 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541454|ref|XP_002511791.1| kinase, putative [Ricinus communis] gi|223548971|gb|EEF50460.1| kinase, putative [Ricinus communis]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 256/299 (85%), Positives = 279/299 (93%)

Query: 1   MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSM 60
           + V A+S+DPIREWILSEG AT IT+I  +GGGCINLA+RY TDAG+FFVKTNRSIGPSM
Sbjct: 104 LPVFAMSEDPIREWILSEGNATKITRISSIGGGCINLANRYDTDAGTFFVKTNRSIGPSM 163

Query: 61  FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH 120
           FEGEALGLGAMYETRTIR PRPFKVG LPTGGSYIIMEFIEFG+SRGNQ + GKKLAEMH
Sbjct: 164 FEGEALGLGAMYETRTIRVPRPFKVGPLPTGGSYIIMEFIEFGASRGNQPLLGKKLAEMH 223

Query: 121 KAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH 180
           KAGKS KGFGFDVDNTIGSTPQIN WTS+WIEFY  HRLGYQLKLALD+YGDS+IYQ+G 
Sbjct: 224 KAGKSQKGFGFDVDNTIGSTPQINTWTSDWIEFYGVHRLGYQLKLALDKYGDSSIYQKGQ 283

Query: 181 RLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG 240
           RL+KN+APLFEG+  EPCLLHGDLWSGNISSDKNG+PVILDPACYYGHNEAEFGMSWCAG
Sbjct: 284 RLVKNMAPLFEGIVTEPCLLHGDLWSGNISSDKNGKPVILDPACYYGHNEAEFGMSWCAG 343

Query: 241 FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           FG +FYN+YFEVMPKQPGF+KRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLR+LK 
Sbjct: 344 FGEAFYNAYFEVMPKQPGFDKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRILKA 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067842|ref|XP_002302560.1| predicted protein [Populus trichocarpa] gi|222844286|gb|EEE81833.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 255/296 (86%), Positives = 275/296 (92%)

Query: 4   AALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEG 63
           AA+SDDPI +WI+SEG AT IT+  P+GGGCIN A RY TDAGSFFVKTNR IGPSMFEG
Sbjct: 1   AAMSDDPISDWIMSEGNATQITRTSPIGGGCINNARRYDTDAGSFFVKTNRGIGPSMFEG 60

Query: 64  EALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAG 123
           EALGLGAMYETRTIR PRPFKVG LPTGGSYIIMEFIEFG+SRGNQSV G+KLAEMHKAG
Sbjct: 61  EALGLGAMYETRTIRVPRPFKVGPLPTGGSYIIMEFIEFGASRGNQSVLGRKLAEMHKAG 120

Query: 124 KSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLM 183
           KS KGFGFDVDNTIGSTPQIN WTS+WIEFY +HRLGYQLKLALDQYGDSTIYQ+G RL+
Sbjct: 121 KSEKGFGFDVDNTIGSTPQINTWTSDWIEFYGKHRLGYQLKLALDQYGDSTIYQKGKRLV 180

Query: 184 KNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGG 243
           KN+APLF+ + +EPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGG
Sbjct: 181 KNMAPLFQNIVIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGG 240

Query: 244 SFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           SFYN+YFEVMPKQPGFEKRR++Y+LYHYLNHYNLFGS YRSSA+SIIDDYL ML V
Sbjct: 241 SFYNAYFEVMPKQPGFEKRREIYLLYHYLNHYNLFGSSYRSSAMSIIDDYLLMLGV 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505144|ref|XP_003521352.1| PREDICTED: uncharacterized protein At3g61080, chloroplastic-like [Glycine max]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 249/295 (84%), Positives = 273/295 (92%)

Query: 5   ALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGE 64
           ++S DP+REWILS+GKAT ITKI PVGGGCINLASRY TDAGSFFVKTNRSIGPSMFE E
Sbjct: 38  SMSKDPVREWILSDGKATEITKISPVGGGCINLASRYDTDAGSFFVKTNRSIGPSMFEAE 97

Query: 65  ALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGK 124
           ALGLGAMYET TIR P+P+KVG LPTGGS+IIMEFI+FG+SRG QS  G+KLAEMHKAGK
Sbjct: 98  ALGLGAMYETGTIRVPKPYKVGPLPTGGSFIIMEFIQFGASRGYQSDLGRKLAEMHKAGK 157

Query: 125 SSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMK 184
           SSKGFGFDVDNTIGSTPQ+N W+S+W++FY EHRLGYQLKLALDQYGD TIY +G RL+K
Sbjct: 158 SSKGFGFDVDNTIGSTPQVNTWSSDWVQFYGEHRLGYQLKLALDQYGDRTIYDKGQRLVK 217

Query: 185 NLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGS 244
           ++APLF  V +EPCLLHGDLWSGNISSDKNGEPVILDPACYYGH+EAEFGMSWCAGFGGS
Sbjct: 218 SMAPLFANVVIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHSEAEFGMSWCAGFGGS 277

Query: 245 FYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           FYNSYFEVMPK PGFE+RRDLYMLYHYLNHYNLFGSGYRSSA+SIIDDYL +LK 
Sbjct: 278 FYNSYFEVMPKLPGFEERRDLYMLYHYLNHYNLFGSGYRSSAMSIIDDYLAILKA 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432201|ref|XP_004133888.1| PREDICTED: protein-ribulosamine 3-kinase, chloroplastic-like [Cucumis sativus] gi|449480088|ref|XP_004155796.1| PREDICTED: protein-ribulosamine 3-kinase, chloroplastic-like [Cucumis sativus]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/299 (82%), Positives = 276/299 (92%)

Query: 1   MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSM 60
           ++VAAL DDPI+EWILSEGKAT ITKI PVGGGCIN A+RY TDAGSFFVK NRSIGPSM
Sbjct: 34  VSVAALGDDPIKEWILSEGKATQITKISPVGGGCINQANRYDTDAGSFFVKRNRSIGPSM 93

Query: 61  FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH 120
           FE EALGL AMYET+TIR P+PFK G LP+GGSYIIMEFIEFGSSRGNQS  G+KLAEMH
Sbjct: 94  FEAEALGLSAMYETQTIRVPKPFKFGPLPSGGSYIIMEFIEFGSSRGNQSELGRKLAEMH 153

Query: 121 KAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH 180
           K+GKS KGFGFDV+NTIGSTPQ+N W+S+W+ FYAE RLG+QL+LA+DQYGDSTIY++G 
Sbjct: 154 KSGKSDKGFGFDVNNTIGSTPQMNTWSSDWVRFYAEERLGFQLRLAVDQYGDSTIYEKGQ 213

Query: 181 RLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG 240
           RL K++ PLF+ V +EPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG
Sbjct: 214 RLAKSIGPLFDNVVIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG 273

Query: 241 FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           FGGSFY++YF+VMPKQPGFEKRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLR+L+ 
Sbjct: 274 FGGSFYDAYFKVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRILQA 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817418|ref|XP_002876592.1| fructosamine kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322430|gb|EFH52851.1| fructosamine kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/298 (82%), Positives = 272/298 (91%)

Query: 2   TVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMF 61
            +AA+S+DPIREWIL++GKAT ITKI  VGGGCINLAS Y TDAGSFFVKTNRSIGP+MF
Sbjct: 29  AMAAMSEDPIREWILTQGKATQITKIGSVGGGCINLASHYHTDAGSFFVKTNRSIGPAMF 88

Query: 62  EGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHK 121
           EGEALGL AMYETRTIR P+P KVG  PTGGSYIIMEFI+FG SRGNQ+  G+KLAEMHK
Sbjct: 89  EGEALGLEAMYETRTIRVPKPHKVGEFPTGGSYIIMEFIDFGGSRGNQAELGRKLAEMHK 148

Query: 122 AGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHR 181
           AGKSSKGFGF+VDNTIGSTPQIN W+S+WIEFY E RLGYQLKLA DQYGDS IYQ+GH 
Sbjct: 149 AGKSSKGFGFEVDNTIGSTPQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGHT 208

Query: 182 LMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGF 241
           L++N+A LFE V +EPCLLHGDLWSGNI+ DKN EPVILDPACYYGHNEA+FGMSWCAGF
Sbjct: 209 LIQNMASLFENVVIEPCLLHGDLWSGNIAYDKNSEPVILDPACYYGHNEADFGMSWCAGF 268

Query: 242 GGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           G SFYN+YF+VMPKQPG+EKRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLRMLKV
Sbjct: 269 GESFYNAYFKVMPKQPGYEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLKV 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331896|ref|NP_191667.2| protein kinase-like protein [Arabidopsis thaliana] gi|209572623|sp|Q9LEW8.2|FN3KR_ARATH RecName: Full=Protein-ribulosamine 3-kinase, chloroplastic; AltName: Full=Fructosamine 3-kinase-related protein; Short=AtFN3K-RP; Flags: Precursor gi|17979159|gb|AAL49775.1| unknown protein [Arabidopsis thaliana] gi|21436461|gb|AAM51431.1| unknown protein [Arabidopsis thaliana] gi|332646630|gb|AEE80151.1| protein kinase-like protein [Arabidopsis thaliana]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/299 (82%), Positives = 271/299 (90%)

Query: 1   MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSM 60
           + +AA+S+DPIREWIL+EGKAT ITKI  VGGGCINLAS Y TDAGSFFVKTNRSIGP+M
Sbjct: 28  VAMAAMSEDPIREWILTEGKATQITKIGSVGGGCINLASHYQTDAGSFFVKTNRSIGPAM 87

Query: 61  FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH 120
           FEGEALGL AMYETRTIR P P K G LPTGGSYIIMEFI+FG SRGNQ+  G+KLAEMH
Sbjct: 88  FEGEALGLEAMYETRTIRVPNPHKAGELPTGGSYIIMEFIDFGGSRGNQAELGRKLAEMH 147

Query: 121 KAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH 180
           KAGK+SKGFGF+VDNTIGSTPQIN W+S+WIEFY E RLGYQLKLA DQYGDS IYQ+GH
Sbjct: 148 KAGKTSKGFGFEVDNTIGSTPQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGH 207

Query: 181 RLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG 240
            L++N+APLFE V +EPCLLHGDLWSGNI+ DKN EPVILDPACYYGHNEA+FGMSWCAG
Sbjct: 208 TLIQNMAPLFENVVIEPCLLHGDLWSGNIAYDKNNEPVILDPACYYGHNEADFGMSWCAG 267

Query: 241 FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           FG SFYN+YF+VMPKQ G+EKRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLRMLK 
Sbjct: 268 FGESFYNAYFKVMPKQAGYEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLKA 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114344|ref|XP_003558960.1| PREDICTED: uncharacterized protein At3g61080, chloroplastic-like isoform 1 [Brachypodium distachyon]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 231/297 (77%), Positives = 267/297 (89%)

Query: 3   VAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFE 62
           VAA+ DDPI+EWIL+EGKAT IT I  +GGGCIN A RY TDAGSFFVKTNR IGP+MFE
Sbjct: 47  VAAMGDDPIKEWILTEGKATQITGISSIGGGCINSAQRYITDAGSFFVKTNRRIGPAMFE 106

Query: 63  GEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKA 122
           GEALGL AMY+T++IR P P+KVG+LPTGGS+IIMEFI+FG SRG+QS  G+KLAEMHKA
Sbjct: 107 GEALGLKAMYDTKSIRVPLPYKVGSLPTGGSFIIMEFIQFGRSRGDQSALGRKLAEMHKA 166

Query: 123 GKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRL 182
            KS KG+GF V+NTIGSTPQIN WT++WIEFY++HRLGYQL+L   ++GDS IY++G +L
Sbjct: 167 AKSDKGYGFYVENTIGSTPQINTWTADWIEFYSKHRLGYQLELISQRFGDSAIYEKGQQL 226

Query: 183 MKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFG 242
           +KN+ PLF+G  +EPCLLHGDLWSGNISSD NG+PVILDPACYYGHNEAEFGMSWCAGFG
Sbjct: 227 IKNMHPLFDGAVIEPCLLHGDLWSGNISSDANGDPVILDPACYYGHNEAEFGMSWCAGFG 286

Query: 243 GSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           G FY+SYF+VMPKQPGFEKRRDLY+LYHYLNHYNLFGSGYRSSA+SII+DYLRMLK 
Sbjct: 287 GEFYSSYFQVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIEDYLRMLKA 343

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8388624|emb|CAB94144.1| putative protein [Arabidopsis thaliana]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/299 (80%), Positives = 267/299 (89%), Gaps = 8/299 (2%)

Query: 1   MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSM 60
           + +AA+S+DPIREWIL+EGKAT ITKI  VGGGCINLAS Y TDAGSFFVKTNRSIGP+M
Sbjct: 28  VAMAAMSEDPIREWILTEGKATQITKIGSVGGGCINLASHYQTDAGSFFVKTNRSIGPAM 87

Query: 61  FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH 120
           FEGEALGL AMYETRTIRA      G LPTGGSYIIMEFI+FG SRGNQ+  G+KLAEMH
Sbjct: 88  FEGEALGLEAMYETRTIRA------GELPTGGSYIIMEFIDFGGSRGNQAELGRKLAEMH 141

Query: 121 KAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH 180
           KAGK+SKGFGF+VDNTIGSTPQIN W+S+WIEFY E RLGYQLKLA DQYGDS IYQ+GH
Sbjct: 142 KAGKTSKGFGFEVDNTIGSTPQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGH 201

Query: 181 RLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG 240
            L++N+APLFE V +EPCLLHGDLWSGNI+ DKN EPVILDPA  YGHNEA+FGMSWCAG
Sbjct: 202 TLIQNMAPLFENVVIEPCLLHGDLWSGNIAYDKNNEPVILDPA--YGHNEADFGMSWCAG 259

Query: 241 FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLKV 299
           FG SFYN+YF+VMPKQ G+EKRRDLY+LYHYLNHYNLFGSGYRSSA+SIIDDYLRMLK 
Sbjct: 260 FGESFYNAYFKVMPKQAGYEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLKA 318

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2101022	326	AT3G61080 [Arabidopsis thalian	0.996	0.914	0.785	4e-129
UNIPROTKB|F1RZZ3	309	FN3KRP "Uncharacterized protei	0.555	0.537	0.410	2.9e-50
UNIPROTKB|Q0P592	309	FN3KRP "Uncharacterized protei	0.538	0.521	0.411	1.8e-48
RGD|1304570	309	Fn3krp "fructosamine-3-kinase-	0.632	0.611	0.367	2.9e-48
MGI|MGI:1926834	309	Fn3k "fructosamine 3 kinase" [	0.555	0.537	0.404	7.7e-48
UNIPROTKB|F1S006	309	FN3K "Uncharacterized protein"	0.622	0.601	0.363	1.8e-46
UNIPROTKB|E1BRW9	309	FN3KRP "Uncharacterized protei	0.555	0.537	0.386	7.6e-46
UNIPROTKB|H9GWC7	302	FN3KRP "Uncharacterized protei	0.578	0.572	0.378	9.7e-46
UNIPROTKB|F1MK10	309	FN3K "Uncharacterized protein"	0.622	0.601	0.358	6.7e-45
UNIPROTKB|Q9KRU5	288	VC_1539 "Uncharacterized prote	0.913	0.947	0.330	1.7e-34

TAIR|locus:2101022 AT3G61080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
 Identities = 234/298 (78%), Positives = 258/298 (86%)

Query:     1 MTVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSM 60
             + +AA+S+DPIREWIL+EGKAT ITKI  VGGGCINLAS Y TDAGSFFVKTNRSIGP+M
Sbjct:    28 VAMAAMSEDPIREWILTEGKATQITKIGSVGGGCINLASHYQTDAGSFFVKTNRSIGPAM 87

Query:    61 FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMH 120
             FEGEALGL AMYETRTIR P P K G LPTGGSYIIMEFI+FG SRGNQ+  G+KLAEMH
Sbjct:    88 FEGEALGLEAMYETRTIRVPNPHKAGELPTGGSYIIMEFIDFGGSRGNQAELGRKLAEMH 147

Query:   121 KAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH 180
             KAGK+SKGFGF+VDNTIGSTPQIN W+S+WIEFY E RLGYQLKLA DQYGDS IYQ+GH
Sbjct:   148 KAGKTSKGFGFEVDNTIGSTPQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGH 207

Query:   181 RLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAG 240
              L++N+APLFE V +EPCLLHGDLWSGNI+ DKN EPVILDPACYYGHNEA+FGMSWCAG
Sbjct:   208 TLIQNMAPLFENVVIEPCLLHGDLWSGNIAYDKNNEPVILDPACYYGHNEADFGMSWCAG 267

Query:   241 FGGSFYNSYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSALSIIDDYLRMLK 298
             FG SFYN+YF+VMPKQ G+EKRRD             FGSGYRSSA+SIIDDYLRMLK
Sbjct:   268 FGESFYNAYFKVMPKQAGYEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLK 325

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

UNIPROTKB|F1RZZ3 FN3KRP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 69/168 (41%), Positives = 97/168 (57%)

Query:   129 FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP 188
             FGFDV    G  PQ+N W S+W+ FYA  R+  Q++L     GD    +    L   +  
Sbjct:   143 FGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELLEQGSGDREARELWAALQLKIPD 202

Query:   189 LFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWC-AGFGGSFYN 247
             LF  +++ P LLHGDLW GN++ D +G PVI DPA +YGH+E E  ++    GF G+FY+
Sbjct:   203 LFRDLDIVPALLHGDLWGGNVAEDPSG-PVIFDPASFYGHSEYELAIAGMFGGFSGAFYS 261

Query:   248 SYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSALSIIDDYLR 295
             +Y   +PK PGFE+R               FG+GYR S+LSI+ + +R
Sbjct:   262 AYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSSLSIMRNLVR 309

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q0P592 FN3KRP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 346 (126.9 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 67/163 (41%), Positives = 92/163 (56%)

Query:   129 FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP 188
             FGFDV    G  PQ+N W  +W+ FYA  R+  Q+ L   + GD    +    L   +  
Sbjct:   143 FGFDVVTCCGYLPQVNDWQQDWVTFYARQRIQPQMDLVEQRSGDREARELWAALQLKIPD 202

Query:   189 LFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWC-AGFGGSFYN 247
             LF  +++ P LLHGDLW GN++ D +G P+I DPA +YGH+E E  ++    GF  +FY+
Sbjct:   203 LFHDLDIIPALLHGDLWGGNVAEDSSG-PIIFDPASFYGHSEYELAIAGMFGGFSSAFYS 261

Query:   248 SYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSALSII 290
             +Y   +PK PGFEKR               FGSGYR S+LSI+
Sbjct:   262 AYHSKIPKAPGFEKRLKLYQLFHYLNHWNHFGSGYRGSSLSIM 304

GO:0016301 "kinase activity" evidence=IEA

RGD|1304570 Fn3krp "fructosamine-3-kinase-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 339 (124.4 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 75/204 (36%), Positives = 104/204 (50%)

Query:   101 EFGSSRGNQSVFGKKLAE--MHKAGKSSKG-----------FGFDVDNTIGSTPQINKWT 147
             + GS   +  +  KKL E  + +AG   KG           FGFDV    G  PQ+N W 
Sbjct:   102 KLGSQLADLHLENKKLGERLLKEAGTVGKGGGLAERQYVDQFGFDVVTCCGYLPQVNDWQ 161

Query:   148 SNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSG 207
              +W+ FYA  R+  Q+ +   + GD         L   +  LF  + + P LLHGDLW G
Sbjct:   162 KDWVTFYARQRIQPQMDMVEKKSGDREALGLWSALQLKIPDLFRDLEIVPSLLHGDLWGG 221

Query:   208 NISSDKNGEPVILDPACYYGHNEAEFGMSWC-AGFGGSFYNSYFEVMPKQPGFEKRRDXX 266
             N++ D +G P+I DPA +YGH+E E  ++    GF  SFY++Y   +P  PGFEKR    
Sbjct:   222 NVAEDSSG-PIIFDPASFYGHSEYELAIAGMFGGFSSSFYSAYHSKIPTTPGFEKRLQLY 280

Query:   267 XXXXXXXXXXXFGSGYRSSALSII 290
                        FGSGYR S+L+I+
Sbjct:   281 QLFHYLNHWNHFGSGYRGSSLNIM 304

GO:0016301 "kinase activity" evidence=IEA

MGI|MGI:1926834 Fn3k "fructosamine 3 kinase" [Mus musculus (taxid:10090)]

 Score = 331 (121.6 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 68/168 (40%), Positives = 88/168 (52%)

Query:   129 FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP 188
             FGF      G  PQ+N+W  +W  F+  HRL  QL L    Y D    +   RL   +  
Sbjct:   143 FGFHTVTCCGFIPQVNEWQEDWPTFFTRHRLQAQLDLIEKDYADRETQELWSRLQVKIPD 202

Query:   189 LFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGM-SWCAGFGGSFYN 247
             LF G+ + P LLHGDLWSGN++ D  G PVI DPA +YGH+E E  + S   GF  SF+ 
Sbjct:   203 LFAGIEIVPALLHGDLWSGNVAEDDQG-PVIYDPASFYGHSEFELAIASMFGGFPRSFFT 261

Query:   248 SYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSALSIIDDYLR 295
             +Y   +PK PGF+KR               FG  YRS +L ++   LR
Sbjct:   262 AYHRKIPKAPGFDKRLLLYQLFNYLNHWNHFGREYRSPSLGVMRKLLR 309

GO:0005829 "cytosol" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030387 "fructosamine-3-kinase activity" evidence=IDA

GO:0030389 "fructosamine metabolic process" evidence=IDA

UNIPROTKB|F1S006 FN3K "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 72/198 (36%), Positives = 101/198 (51%)

Query:   108 NQSVFGKKL-AEMHKAGKSSKG--------FGFDVDNTIGSTPQINKWTSNWIEFYAEHR 158
             NQ + G+KL  E  + G+ ++G        FGF      G  PQ+N+W  +W  F+A HR
Sbjct:   114 NQKL-GEKLRGEESRVGQRAEGAGPQYVTKFGFHTVTCCGFIPQVNEWQDDWPTFFARHR 172

Query:   159 LGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPV 218
             L  QL L    Y D    +   RL   +  LF G+ + P LLHGDLWSGN++ D  G PV
Sbjct:   173 LQAQLDLIEKDYADREARELWSRLQVKIPDLFCGLEIVPALLHGDLWSGNVAEDDLG-PV 231

Query:   219 ILDPACYYGHNEAEFGMSWC-AGFGGSFYNSYFEVMPKQPGFEKRRDXXXXXXXXXXXXX 277
             + DPA +YGH+E E  ++    GF   F+ +Y   +PK PGF++R               
Sbjct:   232 VYDPASFYGHSEFELAIALMFGGFPRPFFTAYHRKVPKAPGFDRRLLLYQLFNYLNHWNH 291

Query:   278 FGSGYRSSALSIIDDYLR 295
             FG  YRS +L  +   L+
Sbjct:   292 FGRQYRSPSLGTMRKLLK 309

GO:0030389 "fructosamine metabolic process" evidence=IEA

GO:0030387 "fructosamine-3-kinase activity" evidence=IEA

UNIPROTKB|E1BRW9 FN3KRP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 332 (121.9 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 65/168 (38%), Positives = 93/168 (55%)

Query:   129 FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP 188
             FGF      G  PQ+N W ++W+ F+A  R+  Q+ +     GD    +   RL   +  
Sbjct:   143 FGFHTVTCCGYLPQVNDWQADWVTFFARQRIQPQMDMIEKNSGDREARELWARLQLKIPS 202

Query:   189 LFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWC-AGFGGSFYN 247
             LF  V + P LLHGDLW GN++ D +G P+I DPA +YGH+E E  ++    GF  SFY+
Sbjct:   203 LFCDVEIVPALLHGDLWGGNVAEDDSG-PIIFDPASFYGHSEYELAIAGMFGGFSSSFYS 261

Query:   248 SYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSALSIIDDYLR 295
             +Y   +PK PGFEKR               FGSGYR S+L+I+ + ++
Sbjct:   262 AYHSKIPKAPGFEKRLKLYQLFHYMNHWNHFGSGYRGSSLNIMRNLVK 309

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|H9GWC7 FN3KRP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 67/177 (37%), Positives = 91/177 (51%)

Query:   106 RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL 165
             R   S  GK   ++ +A      FGFDV    G  PQ+N W  +W+ FYA  R+  Q+ +
Sbjct:   122 RKEASTVGKGGGQVDRAFVDK--FGFDVVTCCGYLPQVNDWQDDWVTFYARQRIQPQMDM 179

Query:   166 ALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACY 225
                  GD    +    L   +  LF  +++ P LLHGDLW+GN++ D +G PVI DPA +
Sbjct:   180 VEKGSGDREARELWSALQLKIPDLFRDLDIVPALLHGDLWAGNVAEDSSG-PVIFDPASF 238

Query:   226 YGHNEAEFGMSWC-AGFGGSFYNSYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSG 281
             YGH E E  ++    GFG SFY++Y   +PK PGFE R               FGSG
Sbjct:   239 YGHAEYELAIAGMFGGFGRSFYSAYHGAIPKAPGFEARLQLYQLFHYLNHWNHFGSG 295

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|F1MK10 FN3K "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 71/198 (35%), Positives = 104/198 (52%)

Query:   108 NQSVFGKKLAEM-HKAGKSSKG--------FGFDVDNTIGSTPQINKWTSNWIEFYAEHR 158
             NQ + G+KL E  ++ G+ ++G        FGF      G  PQ+N+W  +W  F+  HR
Sbjct:   114 NQKL-GEKLREEENRVGQRAEGAGPRYVAKFGFHTVTCCGFIPQVNEWQDDWPTFFTRHR 172

Query:   159 LGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPV 218
             L  QL L    Y D    +   +L   +  LF G+ + P LLHGDLWSGN++ D +G P+
Sbjct:   173 LQAQLDLIEKDYADREAQELWSQLQVKIPDLFCGLEIVPALLHGDLWSGNVAEDDSG-PI 231

Query:   219 ILDPACYYGHNEAEFGMSWC-AGFGGSFYNSYFEVMPKQPGFEKRRDXXXXXXXXXXXXX 277
             I DPA +YGH+E E  ++    GF  SF+ +Y + +PK PGF++R               
Sbjct:   232 IYDPASFYGHSEFELAIALMFGGFPRSFFTAYHQKVPKAPGFDRRLLLYQLFNYLNHWNH 291

Query:   278 FGSGYRSSALSIIDDYLR 295
             FG  YRS +L  +   L+
Sbjct:   292 FGRQYRSPSLGTMRKLLK 309

GO:0030389 "fructosamine metabolic process" evidence=IEA

GO:0030387 "fructosamine-3-kinase activity" evidence=IEA

UNIPROTKB|Q9KRU5 VC_1539 "Uncharacterized protein VC_1539" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 94/284 (33%), Positives = 139/284 (48%)

Query:    16 LSE--GKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYE 73
             LSE  GK  H+ +   V GG IN           +FVKTN+    + F  E   L  M E
Sbjct:     9 LSEQLGKDFHLVEKEKVHGGDINECFMVSDGIDRYFVKTNQREYLTKFTAEVENLRVMRE 68

Query:    74 TRTIRAPRPFKVGALPTGGSYIIMEFIEFGS-SRGNQSV-FGKKLAEMHKAGKSSKGFGF 131
             + T++ P     G   T  +Y+++ ++         +S  FG +LA +H+ G+  K FGF
Sbjct:    69 SNTVQVPEYILHGTSKTH-AYLVLNYLATKPLDDAERSYEFGVQLANLHRWGEQ-KEFGF 126

Query:   132 DVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFE 191
             D+DN IG+T Q N W   W  F+AE R+G+QL+L  ++  + T       ++K       
Sbjct:   127 DIDNYIGATVQPNPWHKKWALFFAEQRIGWQLQLMQEKGVNLTNINEFVEMVKTR---LA 183

Query:   192 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGSFYNSYF 250
               +  P LLHGDLW GN+++  NG P+  DPACY+G  E +  ++ W  GF   F+  Y 
Sbjct:   184 NHSPRPSLLHGDLWFGNVANIVNG-PLCFDPACYWGDRECDIALAEWFGGFQPEFFQGYE 242

Query:   251 EVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSALSIIDDYL 294
              V P   G+E+R+D             FG  Y   A  +I+  L
Sbjct:   243 SVWPLDWGYEERKDIYNLYHVLNHYNQFGGHYLDEAQKLIEKIL 286

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2XBT1	FN3KR_ORYSI	2, ., 7, ., 1, ., 1, 7, 2	0.7811	0.9933	0.8684	N/A	no
Q9KRU5	Y1539_VIBCH	No assigned EC number	0.3611	0.8996	0.9340	yes	no
Q87PM1	Y1481_VIBPA	No assigned EC number	0.3701	0.8494	0.8819	yes	no
Q8K274	KT3K_MOUSE	2, ., 7, ., 1, ., -	0.4105	0.8662	0.8381	yes	no
Q10SM2	FN3KR_ORYSJ	2, ., 7, ., 1, ., 1, 7, 2	0.7811	0.9933	0.8684	yes	no
Q9HA64	KT3K_HUMAN	2, ., 7, ., 1, ., -	0.4	0.8829	0.8543	yes	no
Q9LEW8	FN3KR_ARATH	2, ., 7, ., 1, ., 1, 7, 2	0.8227	1.0	0.9171	yes	no
Q8D9N5	Y2562_VIBVU	No assigned EC number	0.3248	0.8862	0.9201	yes	no
P46381	YNIA_ENTAK	No assigned EC number	0.3235	0.8561	0.8951	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026253001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (330 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022056001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (174 aa)	•		•	•					0.828
	GSVIVG00015101001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (525 aa)	•								0.575
	GSVIVG00036954001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (121 aa)	•			•					0.558
	GSVIVG00038743001	SubName- Full=Chromosome chr2 scaffold_97, whole genome shotgun sequence; (322 aa)				•					0.438
	GSVIVG00015908001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (324 aa)				•					0.429
	GSVIVG00029446001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (190 aa)	•								0.424
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)				•					0.424
	GSVIVG00003851001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (518 aa)				•					0.416
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.413
	GSVIVG00025052001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (226 aa)				•					0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
pfam03881	287	pfam03881, Fructosamin_kin, Fructosamine kinase	1e-131
COG3001	286	COG3001, COG3001, Uncharacterized protein conserve	1e-81
pfam01636	238	pfam01636, APH, Phosphotransferase enzyme family	1e-08
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	2e-04
COG3173	321	COG3173, COG3173, Predicted aminoglycoside phospho	0.002

>gnl|CDD|146488 pfam03881, Fructosamin_kin, Fructosamine kinase

 Score =  373 bits (960), Expect = e-131
 Identities = 125/288 (43%), Positives = 167/288 (57%), Gaps = 7/288 (2%)

Query: 11  IREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGA 70
            ++     G    IT+  PVGGG IN A R       +FVK N     +MFE EA GL  
Sbjct: 5   AQQLSEQLGTPFTITEREPVGGGDINQAYRISDGEQRYFVKLNEKEALAMFEAEAEGLEL 64

Query: 71  MYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS-SRGNQSVFGKKLAEMHKAGKSSKGF 129
           +  T+TIR PR    G+     S++++E++  G  + G+    G++LA++H+ G   K F
Sbjct: 65  LARTQTIRVPRVIAWGST-RDHSFLVLEYLPLGPDNTGSAYQLGQQLAKLHQWG-EQKQF 122

Query: 130 GFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPL 189
           GFD DNTIGSTPQ N+W S+W  F+AE R+G+QL+LA ++      +    RL++ +A L
Sbjct: 123 GFDFDNTIGSTPQPNRWQSSWATFFAEQRIGWQLQLAKEKGLS---FGDIDRLVERVADL 179

Query: 190 FEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGSFYNS 248
             G   +P LLHGDLWSGN +   +GEPVI DPACYYG  E +  M+    GF   FY+ 
Sbjct: 180 LAGHQPQPSLLHGDLWSGNAAFTADGEPVIFDPACYYGDRECDLAMTELFGGFPPDFYDG 239

Query: 249 YFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRM 296
           Y  V P   G+E R+ LY LYH LNH NLFG GY S A  +ID  L  
Sbjct: 240 YQSVYPLDEGYEDRKPLYQLYHLLNHLNLFGGGYLSQAQQLIDKLLAE 287

This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function. Length = 287

>gnl|CDD|225547 COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]

 Score =  247 bits (633), Expect = 1e-81
 Identities = 109/281 (38%), Positives = 145/281 (51%), Gaps = 20/281 (7%)

Query: 23  HITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRP 82
            I +   V GG IN A R       FFVK N+    SMF  EA GL  +  + TI  P+ 
Sbjct: 17  EIKEREEVSGGDINEAWRLRDGTDPFFVKCNQREQLSMFTAEADGLELLARSNTITVPKV 76

Query: 83  FKVGALPTGGSYIIMEFIEFGSSRG-NQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTP 141
             VGA     SY+++E++  G     +  + G++LA +H+ G     FG D DN IG+TP
Sbjct: 77  IAVGA-SRDHSYLVLEYLPTGPLDAHSAFILGQQLARLHQWG-GQAQFGLDFDNYIGTTP 134

Query: 142 QINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH------RLMKNLAPLFEGVNV 195
           Q N W   W  F+AE R+G+QL+LA          +RG        +++ +  L      
Sbjct: 135 QPNTWQRRWATFFAEQRIGWQLQLAR---------ERGLTFGDIDAIVEKIQELLADHQP 185

Query: 196 EPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGSFYNSYFEVMP 254
           +P LLHGDLWSGN +  K+G PVI DPACY+G  E +  M     GF   FY+ Y  V P
Sbjct: 186 QPSLLHGDLWSGNCAFGKDG-PVIFDPACYWGDRECDLAMLELFGGFPPEFYDGYQSVSP 244

Query: 255 KQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLR 295
              G+ +R+ +Y LYH LNH NLFG  Y   A   ID  L 
Sbjct: 245 LPAGYLERKPIYQLYHLLNHANLFGGHYLVEAQKSIDRILS 285

Length = 286

>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 44/261 (16%), Positives = 73/261 (27%), Gaps = 44/261 (16%)

Query: 26  KICPVGGGCINLASRYGTDAGSFFVKTNRSIGPS---MFEGEALGLGAMYETRTIRAPRP 82
            + P+ GG  N     GT  G + +K       +     E   L   A      I  PR 
Sbjct: 1   TLRPLSGGASNRTYLVGTGDGRYVLKLAPPAEAAEELRRELALLRHLA---AAGIPVPRV 57

Query: 83  FKVGALPTGGS--YIIMEFIEFGSSRGNQSV----------FGKKLAEMHKAGKSSKGFG 130
              G    G    +++ME +  G                    + LA +H     +    
Sbjct: 58  LAGGTDGGGLGLPFLLMEGLP-GEVLTRPLDPAERGALLEALARLLARLHSVPPEALPLA 116

Query: 131 FDVDNTIGSTPQINKWTSNWIEFYAE-HRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPL 189
                               ++   +      +L  A      + +++R    +  L P 
Sbjct: 117 R--------------RLRRRLKLLRQLAAALRRLVAAELLDRLAELWERLLAALLALLPA 162

Query: 190 FEGVNVEPCLLHGDLWSGNISSDKNGEPV-ILDPA-CYYGHNEAEFGM---SWCAGFGGS 244
                    L+HGDL  GN+  D  G    ++D      G    +      S     G  
Sbjct: 163 LP-----LVLVHGDLHPGNLLVDPGGRVTGVIDFEDAGLGDPAYDLASLLRSLGEELGAE 217

Query: 245 FYNSYFEVMPKQPGFEKRRDL 265
              +Y       P   + R+L
Sbjct: 218 LLAAYLAAYGAAPDPARLREL 238

This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881. Length = 238

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 27  ICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKV 85
           I  + GG  N     GT    + +K N S    +  E E   L  +   + +  P+    
Sbjct: 3   IKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAIL-QLLARKGLPVPKVLAS 61

Query: 86  GALPTGGSYIIMEFIEFGSSRGNQSVF---------GKKLAEMHKA 122
           G    G SY++ME+IE G +    S            + LA++H+ 
Sbjct: 62  GESD-GWSYLLMEWIE-GETLDEVSEEEKEDIAEQLAELLAKLHQL 105

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|225714 COG3173, COG3173, Predicted aminoglycoside phosphotransferase [General function prediction only]

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 47/240 (19%)

Query: 5   ALSDDPIREWILSEGKATHITKICPVG-GGCINLASRYGTDAGSFFVKTNRSIGPS-MFE 62
           AL    +  ++ S+        I     GG  N   R G     + ++      P     
Sbjct: 7   ALDIAALAAYLRSQIPGYAGLLIVEEISGGWSNDTFRLGDTGQKYVLRKPPRGDPVESAH 66

Query: 63  GEALGLGAMYETRTIRA------PRPFKVGALPTGGS----YIIMEFIE---------FG 103
            E        E R I A      P P +   L   G     + +ME++E           
Sbjct: 67  DEKR------EYRVIAALLDVDVPVP-RAFGLCGEGYLGTPFYVMEWVEGEVVWSALPPE 119

Query: 104 SSRGNQSV--FGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGY 161
           S     ++      LAE+H    +        +   G   Q+ +W   +           
Sbjct: 120 SLGRQFALDALADFLAELHSIDAAGLPDPGKPNAYRGR--QLARWDDEYRRA-------- 169

Query: 162 QLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILD 221
             K  L   G   +  R  + ++   P + G    P L+HGD   GN+  D      +LD
Sbjct: 170 --KKELG--GRIPLADRLIKWLEANRPPWAG---PPVLVHGDYRPGNLIIDPGRPTGVLD 222

Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	100.0
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	100.0
KOG3021	313	consensus Predicted kinase [General function predi	100.0
PRK10593	297	hypothetical protein; Provisional	100.0
PRK05231	319	homoserine kinase; Provisional	99.97
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	99.96
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	99.96
COG2334	331	Putative homoserine kinase type II (protein kinase	99.96
PRK11768	325	serine/threonine protein kinase; Provisional	99.94
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	99.93
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	99.92
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	99.91
PLN02876	822	acyl-CoA dehydrogenase	99.91
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	99.9
PF01636	239	APH: Phosphotransferase enzyme family This family	99.9
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	99.9
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	99.9
PRK09550	401	mtnK methylthioribose kinase; Reviewed	99.89
PRK06149	972	hypothetical protein; Provisional	99.88
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	99.88
PLN02756	418	S-methyl-5-thioribose kinase	99.88
PRK06148	1013	hypothetical protein; Provisional	99.88
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	99.88
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.88
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	99.87
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	99.86
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.85
PRK12396	409	5-methylribose kinase; Reviewed	99.84
PLN02236	344	choline kinase	99.81
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	99.81
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	99.79
PTZ00296	442	choline kinase; Provisional	99.73
COG3231	266	Aph Aminoglycoside phosphotransferase [Translation	99.72
PTZ00384	383	choline kinase; Provisional	99.67
TIGR02905	313	spore_yutH spore coat protein YutH. Members of thi	99.62
PRK10271	188	thiK thiamine kinase; Provisional	99.6
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.59
PF07914	414	DUF1679: Protein of unknown function (DUF1679); In	99.59
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	99.58
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	99.53
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	99.47
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	99.38
KOG4720	391	consensus Ethanolamine kinase [Lipid transport and	99.37
COG3178	351	Predicted phosphotransferase related to Ser/Thr pr	99.36
COG4857	408	Predicted kinase [General function prediction only	99.35
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.3
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.28
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.26
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.23
COG0478	304	RIO-like serine/threonine protein kinase fused to	99.22
PRK14879	211	serine/threonine protein kinase; Provisional	99.22
TIGR02457	528	TreS_Cterm trehalose synthase-fused probable malto	99.1
PRK09902	216	hypothetical protein; Provisional	99.02
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.01
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.99
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.98
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.97
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.96
KOG3087	229	consensus Serine/threonine protein kinase [General	98.94
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.92
smart00090	237	RIO RIO-like kinase.	98.87
KOG2686	366	consensus Choline kinase [Cell wall/membrane/envel	98.81
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.81
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	98.81
PRK14705	1224	glycogen branching enzyme; Provisional	98.8
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.8
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.77
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.75
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.72
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.7
KOG2268	465	consensus Serine/threonine protein kinase [Signal	98.69
PRK12274	218	serine/threonine protein kinase; Provisional	98.68
TIGR02569	272	TIGR02569_actnb conserved hypothetical protein TIG	98.66
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.62
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.61
COG3570	274	StrB Streptomycin 6-kinase [Defense mechanisms]	98.56
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	98.49
COG2187	337	Uncharacterized protein conserved in bacteria [Fun	98.49
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.46
KOG0605	550	consensus NDR and related serine/threonine kinases	98.42
PRK09188	365	serine/threonine protein kinase; Provisional	98.3
KOG1989	738	consensus ARK protein kinase family [Signal transd	98.19
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	98.18
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.14
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	98.14
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	98.12
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	98.12
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.11
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	98.11
PLN00034	353	mitogen-activated protein kinase kinase; Provision	98.09
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.07
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.06
KOG2270	520	consensus Serine/threonine protein kinase involved	98.06
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	98.06
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	98.04
KOG1187	361	consensus Serine/threonine protein kinase [Signal	98.03
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	98.02
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.02
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	98.02
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.02
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	98.02
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	98.02
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	98.02
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.01
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	98.01
PTZ00267	478	NIMA-related protein kinase; Provisional	98.01
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	98.01
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	98.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	98.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	97.99
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	97.99
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	97.98
KOG0610	459	consensus Putative serine/threonine protein kinase	97.98
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	97.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	97.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	97.95
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	97.95
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	97.94
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	97.94
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	97.93
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	97.93
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	97.92
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	97.92
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	97.92
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	97.92
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	97.92
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	97.92
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	97.92
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	97.91
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	97.91
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	97.9
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	97.9
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	97.9
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	97.89
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	97.89
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	97.89
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	97.89
PRK10345	210	hypothetical protein; Provisional	97.88
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	97.88
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	97.87
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	97.87
KOG0595	429	consensus Serine/threonine-protein kinase involved	97.87
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	97.86
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	97.86
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	97.86
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	97.85
KOG0581	364	consensus Mitogen-activated protein kinase kinase	97.85
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	97.85
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	97.84
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	97.83
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	97.83
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	97.83
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	97.82
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	97.82
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	97.81
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	97.81
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	97.81
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	97.81
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	97.8
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	97.8
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	97.79
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	97.79
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	97.79
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	97.79
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	97.79
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	97.79
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	97.78
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	97.78
KOG0583	370	consensus Serine/threonine protein kinase [Signal	97.78
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	97.77
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	97.77
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	97.77
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	97.77
PHA03212	391	serine/threonine kinase US3; Provisional	97.77
PHA03209	357	serine/threonine kinase US3; Provisional	97.76
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	97.76
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	97.76
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	97.76
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	97.75
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	97.75
PHA03211	461	serine/threonine kinase US3; Provisional	97.75
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	97.74
KOG0598	357	consensus Ribosomal protein S6 kinase and related	97.73
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	97.72
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	97.72
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	97.71
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	97.71
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	97.71
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	97.71
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	97.7
KOG0596	677	consensus Dual specificity; serine/threonine and t	97.7
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	97.7
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	97.7
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	97.7
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	97.7
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	97.69
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	97.69
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	97.69
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	97.69
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	97.68
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	97.67
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	97.67
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	97.67
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	97.67
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	97.67
PHA03207	392	serine/threonine kinase US3; Provisional	97.67
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	97.66
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	97.66
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	97.65
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	97.65
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	97.65
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	97.64
KOG0192	362	consensus Tyrosine kinase specific for activated (	97.64
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	97.63
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	97.63
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	97.63
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	97.62
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	97.62
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	97.62
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	97.61
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	97.61
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	97.61
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	97.6
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	97.6
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	97.6
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	97.6
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	97.59
COG3281	438	Ble Uncharacterized protein, probably involved in	97.59
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	97.59
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	97.59
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	97.58
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	97.58
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	97.58
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	97.57
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	97.57
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	97.57
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	97.57
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	97.56
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	97.56
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	97.56
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	97.55
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	97.55
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	97.54
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	97.54
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	97.54
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	97.54
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	97.54
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	97.54
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	97.54
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	97.54
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	97.53
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	97.53
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	97.53
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	97.52
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	97.52
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	97.51
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	97.51
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	97.51
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	97.51
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	97.5
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	97.5
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	97.49
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	97.49
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	97.49
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	97.48
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	97.48
KOG0198	313	consensus MEKK and related serine/threonine protei	97.48
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	97.48
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	97.48
KOG0575	592	consensus Polo-like serine/threonine protein kinas	97.47
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	97.47
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	97.47
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	97.47
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	97.47
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	97.46
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	97.46
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	97.46
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	97.46
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	97.46
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	97.45
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	97.45
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	97.45
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	97.44
PTZ00024	335	cyclin-dependent protein kinase; Provisional	97.43
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	97.43
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	97.43
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	97.42
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	97.42
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	97.41
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	97.41
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	97.41
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	97.41
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	97.4
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	97.4
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	97.4
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	97.4
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	97.39
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	97.39
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	97.39
KOG3653	534	consensus Transforming growth factor beta/activin	97.38
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	97.38
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	97.38
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	97.38
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	97.37
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	97.37
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	97.37
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	97.36
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	97.36
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	97.36
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	97.36
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	97.36
PTZ00036	440	glycogen synthase kinase; Provisional	97.35
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	97.35
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	97.35
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	97.35
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	97.35
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	97.34
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	97.34
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	97.33
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	97.33
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	97.33
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	97.33
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	97.33
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	97.33
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.33
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	97.33
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	97.32
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	97.32
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	97.32
PTZ00284	467	protein kinase; Provisional	97.32
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	97.31
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	97.31
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	97.31
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	97.31
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	97.3
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	97.3
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	97.3
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	97.3
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	97.29
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	97.29
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	97.28
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	97.27
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	97.26
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	97.25
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	97.25
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	97.25
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	97.24
PTZ00266	1021	NIMA-related protein kinase; Provisional	97.24
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	97.23
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	97.21
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	97.2
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	97.18
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	97.18
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	97.17
PLN00009	294	cyclin-dependent kinase A; Provisional	97.17
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	97.16
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	97.16
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	97.16
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	97.15
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	97.15
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	97.15
PTZ00283	496	serine/threonine protein kinase; Provisional	97.15
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	97.14
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	97.14
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	97.14
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	97.13
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.12
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	97.12
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	97.12
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	97.11
KOG0578	550	consensus p21-activated serine/threonine protein k	97.11
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	97.1
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	97.1
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	97.09
KOG0577	948	consensus Serine/threonine protein kinase [Signal	97.07
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	97.07
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	97.06
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	97.04
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	97.03
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	97.03
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	97.03
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	97.02
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	97.01
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	97.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	97.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	96.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	96.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	96.95
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	96.93
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	96.93
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	96.92
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	96.92
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	96.91
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	96.91
PHA02988	283	hypothetical protein; Provisional	96.88
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	96.84
PHA03210	501	serine/threonine kinase US3; Provisional	96.83
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	96.8
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	96.8
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	96.8
KOG0607	463	consensus MAP kinase-interacting kinase and relate	96.79
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	96.78
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	96.75
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	96.74
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	96.74
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	96.74
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	96.73
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	96.72
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.71
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	96.69
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	96.68
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.64
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	96.6
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	96.59
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	96.52
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.47
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	96.47
KOG1167	418	consensus Serine/threonine protein kinase of the C	96.44
KOG0582	516	consensus Ste20-like serine/threonine protein kina	96.44
PLN03224	507	probable serine/threonine protein kinase; Provisio	96.44
KOG0586	596	consensus Serine/threonine protein kinase [General	96.41
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	96.39
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	96.32
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	96.32
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	96.25
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	96.24
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	96.21
KOG1152	772	consensus Signal transduction serine/threonine kin	96.13
KOG2052	513	consensus Activin A type IB receptor, serine/threo	96.12
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	96.09
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	96.07
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	96.02
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	95.98
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	95.92
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	95.78
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	95.66
KOG0694	694	consensus Serine/threonine protein kinase [Signal	95.01
KOG2269	531	consensus Serine/threonine protein kinase [Signal	95.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	94.99
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	94.95
KOG0611	668	consensus Predicted serine/threonine protein kinas	94.95
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	94.93
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	94.82
PHA02882	294	putative serine/threonine kinase; Provisional	94.78
PF10009	385	DUF2252: Uncharacterized protein conserved in bact	94.66
KOG0584	632	consensus Serine/threonine protein kinase [General	94.43
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	94.37
KOG0589	426	consensus Serine/threonine protein kinase [General	94.1
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	93.44
cd05124	238	AFK Actin-Fragmin Kinase (AFK); catalytic domain.	93.27
KOG4721	904	consensus Serine/threonine protein kinase, contain	93.05
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	92.8
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	92.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	91.98
PHA00451	362	protein kinase	91.92
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	91.59
PF09192	275	Act-Frag_cataly: Actin-fragmin kinase, catalytic;	91.44
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	91.36
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	91.05
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	90.26
PLN00181	793	protein SPA1-RELATED; Provisional	90.25
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	90.03
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	89.38
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	89.16
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	88.72
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	88.45
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	88.03
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	87.91
COG4320	410	Uncharacterized protein conserved in bacteria [Fun	87.63
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	87.32
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	86.31
KOG1290	590	consensus Serine/threonine protein kinase [Signal	84.53
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	84.51
PF07805	81	HipA_N: HipA-like N-terminal domain; InterPro: IPR	84.47
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	83.55
KOG0661	538	consensus MAPK related serine/threonine protein ki	81.74
KOG1236	565	consensus Predicted unusual protein kinase [Genera	81.48

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=100.00  E-value=9.6e-52  Score=356.69  Aligned_cols=283  Identities=46%  Similarity=0.792  Sum_probs=211.9

Q ss_pred             cchHHHHHHhc-CCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeec
Q 022304            8 DDPIREWILSE-GKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVG   86 (299)
Q Consensus         8 ~~~i~~~l~~~-~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~   86 (299)
                      ++.|.+.|++. +.+.+|.++++++||..|.+|++++++++||||+........++.|++.|+.|++..++.||+|+..+
T Consensus         2 w~~i~~~~~~~~~~~~~i~~~~~v~GG~i~~a~~~~~~~~~~FvK~~~~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G   81 (288)
T PF03881_consen    2 WQAIEQQISEQLGADFKITSIEPVSGGDINEAYRLDTDGGSYFVKVNSESGRDMFEGEAEGLKALAEANPIRVPKVIAWG   81 (288)
T ss_dssp             HHHHHHHHHHHHTS-----EEEEE--SSSSEEEEEETTS-EEEEEEEEGGGCCHHHHHHHHHHHHCHTTTSBS--EEEEE
T ss_pred             hHHHHHHHHHHhCCCCceeeeEecCCCChhheEEEECCCccEEEEecChhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEE
Confidence            56788999888 55567999999999999999999988889999999865567799999999999877789999999998


Q ss_pred             ccCCCceEEEEecccCCCC-CCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHH
Q 022304           87 ALPTGGSYIIMEFIEFGSS-RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL  165 (299)
Q Consensus        87 ~~~~~~~~~v~e~l~G~~~-~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                      .. .+..|++|||++.... +..++++|+.||+||+... .+.|||+.++++|..|+.|.|..+|.+||.++|+.++++.
T Consensus        82 ~~-~~~~fLlle~l~~~~~~~~~~~~lg~~LA~LH~~~~-~~~FGf~~~~~~G~~~q~N~w~~~W~~Ff~~~RL~~~l~~  159 (288)
T PF03881_consen   82 EY-DDDAFLLLEFLEMGSPSPPDWEELGRQLAALHQWSP-AGKFGFPVDTYIGSLPQPNTWTDSWEEFFAEQRLRPQLEL  159 (288)
T ss_dssp             E--SSCCEEEEE--------CCHHHHHHHHHHHHHH-T---SSBB-SS-EEETTEEE----BS-HHHHHHHHCCHHHHHH
T ss_pred             ee-cCCceEEEEeecCCCCCchhHHHHHHHHHHHhhhcC-CCCcCCCcCCcccCcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            76 5667999999998833 4789999999999999332 2569999999999999999999999999998889998887


Q ss_pred             HHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhhhhh-hhcCCChh
Q 022304          166 ALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGS  244 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla~~-~~~~~~~~  244 (299)
                      +.+.+..   ...++++.+++...+.....+|+|+|||||+||++++.++.+.|||+.+++||+++|||++ ++++|+++
T Consensus       160 ~~~~~~~---~~~~~~l~~~~~~~l~~~~~~PsLlHGDLW~GN~~~~~~g~p~l~DPa~yygh~E~DLam~~lfggf~~~  236 (288)
T PF03881_consen  160 AREKGGL---DAELERLVERLPSLLPGREPKPSLLHGDLWSGNVGFDADGEPVLFDPACYYGHREVDLAMTRLFGGFPDE  236 (288)
T ss_dssp             HHHCTSS----CHHHHHHHHHHHCCTTS----EEE-SS-SGGGEEEETTE-EEE-S---EEE-CHHHHHHHCCCSTTHHH
T ss_pred             HHhhCCc---hhHHHHHHHHHHHHhcCCCCCceeeEcCccccceeecCCCCceeeccccccCchHhhhhhhhhhCCCCHH
Confidence            7765543   2345566677776666555788999999999999999988899999999999999999987 56889999


Q ss_pred             hHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 022304          245 FYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLR  295 (299)
Q Consensus       245 f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  295 (299)
                      |+++|.++.|++++|.+|..+|+|++.|+|...||.+|..+.+++|++|++
T Consensus       237 f~~~Y~~~~Pl~~g~~~R~~lY~Ly~lL~H~~lFG~~Y~~~~~~~l~~ll~  287 (288)
T PF03881_consen  237 FYDAYQEHYPLSEGWEDRNPLYQLYHLLNHLNLFGGSYRSQVRRILKRLLS  287 (288)
T ss_dssp             HHHHHHHHS---TTHHHHHHHHHHHHHHHHHHHC-GCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999986

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=2.2e-50  Score=325.61  Aligned_cols=281  Identities=39%  Similarity=0.682  Sum_probs=252.9

Q ss_pred             cchHHHHHHhc-CCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeec
Q 022304            8 DDPIREWILSE-GKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVG   86 (299)
Q Consensus         8 ~~~i~~~l~~~-~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~   86 (299)
                      ++.|.+.|+++ |.+ +|...+++.||..|..|+|..+..+||+|.+.......+.+|++-|+.|+....+.||+|+..+
T Consensus         2 w~~i~~qlse~~g~~-~i~er~~v~gG~inea~~v~dg~~~~FvK~n~~~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G   80 (286)
T COG3001           2 WQAISQQLSEQLGEG-EIKEREEVSGGDINEAWRLRDGTDPFFVKCNQREQLSMFTAEADGLELLARSNTITVPKVIAVG   80 (286)
T ss_pred             hHHHHHHHHHHhCch-hhhcccccCCccccceeEeecCCcceEEEecchhhHHHHHHHHHHHHHHHhcCCccccceEEec
Confidence            56788888888 555 8889999999999999999988889999999876566789999999999987669999999998


Q ss_pred             ccCCCceEEEEecccCCCCC-CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHH
Q 022304           87 ALPTGGSYIIMEFIEFGSSR-GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL  165 (299)
Q Consensus        87 ~~~~~~~~~v~e~l~G~~~~-~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                      .. .+..|+||+|++-.++. ..++++|..||+||+...+. .|||.-++.+|+.+++|.|.++|..||.+.|+..+++.
T Consensus        81 ~~-~~~sylVle~L~~~~~d~~~~~~~GqqLA~LH~~~~~~-~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlql  158 (286)
T COG3001          81 AS-RDHSYLVLEYLPTGPLDAHSAFILGQQLARLHQWGGQA-QFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQL  158 (286)
T ss_pred             CC-CCeeEEEEeeccCCCCCchhHHHHHHHHHHHHhhcCcc-ccCcccccccCCCCCCCCCcchHHHHHHHhhhhHHHHH
Confidence            76 67899999999987774 57899999999999999864 69999999999999999999999999999999999988


Q ss_pred             HHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhhhhh-hhcCCChh
Q 022304          166 ALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGGS  244 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla~~-~~~~~~~~  244 (299)
                      +.+.+.+-.   .++.+++++.+++.++++.|+|+|||||.+|..+..+| +.|+|+.|.+||++.|||++ .+++|+.+
T Consensus       159 ar~rg~~f~---did~~~~~v~elL~~hqpqPsLlHGDLW~gN~a~~~~G-Pv~fDPA~y~GDrE~Dlam~elFggfp~e  234 (286)
T COG3001         159 ARERGLTFG---DIDAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDG-PVIFDPACYWGDRECDLAMLELFGGFPPE  234 (286)
T ss_pred             HHHhCCCcc---CHHHHHHHHHHHHhcCCCCcceeecccccccccccCCC-CeeeccccccCCcccceehhhhhcCCcHH
Confidence            887765422   23566777777888777889999999999999999998 99999999999999999998 56899999


Q ss_pred             hHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 022304          245 FYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLR  295 (299)
Q Consensus       245 f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  295 (299)
                      |++||.++.|++.++.+|..+|+|+..++|...||+.|.+.+..+|++.++
T Consensus       235 fy~gY~sv~PL~~G~~eRk~iYqLY~llnh~~~FGg~Y~~~a~k~i~~iL~  285 (286)
T COG3001         235 FYDGYQSVSPLPAGYLERKPIYQLYHLLNHANLFGGHYLVEAQKSIDRILS  285 (286)
T ss_pred             HHHhhhccCCCCCchHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999875

>KOG3021 consensus Predicted kinase [General function prediction only]

Probab=100.00  E-value=4.9e-46  Score=296.93  Aligned_cols=287  Identities=48%  Similarity=0.868  Sum_probs=251.6

Q ss_pred             HHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           12 REWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      .++|.....-.++..+-.+++|+.|..--.+|+.|++|||.+++..+..++.|.+.|+.+.+...+.||+|+...+...|
T Consensus         2 ee~l~ael~~~~vr~~gs~gggcI~~~r~ydtDaG~~FvK~nr~~~~~mfeGE~~sLeAi~sT~tv~vprpikvid~p~G   81 (313)
T KOG3021|consen    2 EELLRAELGLNNVRALGSVGGGCISDGRHYDTDAGKVFVKVNRSIARDMFEGELASLEAIQSTETVLVPRPIKVIDLPGG   81 (313)
T ss_pred             hHHHHHhcCcceeeeecCCCCceeccccccccCCccEEEEeccccchHHHhhHHHHHHHHHhcCceecCCceeeEecCCC
Confidence            35565551222566666778888887767788899999999988667889999999999998777899999998776568


Q ss_pred             ceEEEEecccCCCCCCcHHHHHHHHHHHH------------hcCCCC-----------CCCCCCCCCcccccccCCCCCC
Q 022304           92 GSYIIMEFIEFGSSRGNQSVFGKKLAEMH------------KAGKSS-----------KGFGFDVDNTIGSTPQINKWTS  148 (299)
Q Consensus        92 ~~~~v~e~l~G~~~~~~~~~lg~~La~lH------------~~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~  148 (299)
                      ..+++||+++-..+..++..+|+.||.||            ....-.           .-|||...+++|.+||.|.|.+
T Consensus        82 gs~lime~idf~~lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge~~e~~~v~~FGF~v~tccG~lpQvNdW~e  161 (313)
T KOG3021|consen   82 GSSLIMEHIDFQGLRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGEEGEQIGVENFGFHVVTCCGRLPQVNDWQE  161 (313)
T ss_pred             ceeeeeehhhcccchhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcccccccchhccceeeeeecccCcccccchh
Confidence            89999999999988889999999999999            222211           1289999999999999999999


Q ss_pred             CHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCC
Q 022304          149 NWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGH  228 (299)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~  228 (299)
                      +|.+|+...|+.++++.+.+...+.+..+....+..+++.++.+...-|+|+|||+|.|||--|+.++|.|+|+...||+
T Consensus       162 dW~eFf~rhRlq~Qldl~~~~~~Dre~~el~~~L~~kia~Lf~~~eI~PaLlHGDLW~GNva~D~~~ePiIfDPasfYgh  241 (313)
T KOG3021|consen  162 DWEEFFARHRLQPQLDLLEKTYGDREAFELWSILQTKIADLFKCLEILPALLHGDLWSGNVAEDGAGEPIIFDPASFYGH  241 (313)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhhccHHHHHHHHHHHHhhHHHhccceeehhhhccccccCcccccCCCCceEeCchhhcCC
Confidence            99999998899999998888878877788888888888999988778899999999999999888888999999999999


Q ss_pred             chhhhhhh-hhcCCChhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHhc
Q 022304          229 NEAEFGMS-WCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLK  298 (299)
Q Consensus       229 ~~~Dla~~-~~~~~~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (299)
                      +++|++++ ++++|++.|+.+|.+..|-.+++.+|+.+|+|+..|+||..||.+|+.+...+|+.|+++++
T Consensus       242 ~Efefgia~mfGgf~~sF~naY~k~ipka~G~eqR~~LYqLyhyLNHwNhFGs~YRs~sl~i~~n~lk~~~  312 (313)
T KOG3021|consen  242 SEFEFGIAKMFGGFTQSFYNAYHKKIPKAPGFEQRLLLYQLYHYLNHWNHFGSGYRSSSLDIMRNLLKNCY  312 (313)
T ss_pred             cHHHHHHHHHhCCCcHHHHHHHhhhcCCCCcHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhc
Confidence            99999987 56889999999999999999999999999999999999999999999999999999999886

>PRK10593 hypothetical protein; Provisional

Probab=100.00  E-value=8.1e-40  Score=286.21  Aligned_cols=277  Identities=18%  Similarity=0.190  Sum_probs=217.2

Q ss_pred             chHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecc
Q 022304            9 DPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGA   87 (299)
Q Consensus         9 ~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~   87 (299)
                      +.|++.+.+. ++..+.+++++++|..+.+|++++.++++|+|+.... ....+..|++.+++|++.+.+|||+|+..+.
T Consensus         2 ~~~~~~~~~~-~~~~~~~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~   80 (297)
T PRK10593          2 EQLRAELSHL-LGEKLSRVECISEQPYAALWALYDSQGNPMPLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMT   80 (297)
T ss_pred             hHHHHHHHHH-hchhhheeeecCCccceeEEEEEcCCCCEEEEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEec
Confidence            4567777666 6669999999999999999999988889999997653 4567899999999999875699999998654


Q ss_pred             cC--CCceEEEEecccCCCCC------C----cHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q 022304           88 LP--TGGSYIIMEFIEFGSSR------G----NQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYA  155 (299)
Q Consensus        88 ~~--~~~~~~v~e~l~G~~~~------~----~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (299)
                      ..  .|..+++||+++|.+..      .    ...++++.|++||+...    +|+     .|.  ..+.|..+|..|+.
T Consensus        81 ~~~~~g~~~LVmE~i~G~~~~~~~~~~~~~~~l~~~l~~~La~LH~~~~----~g~-----~g~--~~~~~~~~w~~f~~  149 (297)
T PRK10593         81 HEQSPGPDVLLLERLRGVSVEAPARTPERWEQLKDQIVEGLLAWHRIDS----RGC-----VGA--VDSTQENLWPSWYQ  149 (297)
T ss_pred             cCCcCCCeEEEEeccCCEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCh----hhc-----ccC--CCCcccccHHHHHH
Confidence            32  47799999999997641      1    13456799999999763    343     232  23456678888886


Q ss_pred             HhhhHHHH---HHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC-CC-eEEEccc-cccCCc
Q 022304          156 EHRLGYQL---KLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN-GE-PVILDPA-CYYGHN  229 (299)
Q Consensus       156 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~-~~-~~iID~~-~~~g~~  229 (299)
                       .++..+.   +............+.+.++.+.+++.+...+.+++|||||||++||+++++ +. ++|||+. +.|||+
T Consensus       150 -~rl~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~L~~~~~~psLlHGDlw~gNvl~~~~~~~i~~liDPa~~~~g~r  228 (297)
T PRK10593        150 -QRVEVLWTTLNQFNNTGLTMQDRRILFRTRECLPALFEGFNDNCVLVHGNFTLRSMLKDPRSDQLLAMLNPGLMLWAPR  228 (297)
T ss_pred             -HHHHHHHhhhhhccccCCChhHHHHHHHHHHhchhhhccCCCCCeeEeCCCCcccEEECCCCCceEEEECchHhCCCCH
Confidence             4554322   222222222222344455566666766654457899999999999999864 33 7899997 789999


Q ss_pred             hhhhhhhhhcCCChhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHhc
Q 022304          230 EAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRMLK  298 (299)
Q Consensus       230 ~~Dla~~~~~~~~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (299)
                      ++|++++.+++|++.|+++|.+..|++++|++|..+|.||+.|+|...||.-+...++.+++.+++||.
T Consensus       229 E~DLa~~~~~~f~~~f~~~Y~~~~pl~~g~~~R~~ly~Ly~~l~h~~~fG~~~~~~~~~~~~~~~~~~~  297 (297)
T PRK10593        229 EYELFRLMDNGLAEQLLWRYLQKAPVAESFIWRRWLYVLWDEVAQLVNTGRFDRRRFDLAAKSLLPWLA  297 (297)
T ss_pred             HHhHHHhhcCCccHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHhccccC
Confidence            999998876889999999999999999999999999999999999999999998999999999999873

>PRK05231 homoserine kinase; Provisional

Probab=99.97  E-value=1.6e-28  Score=217.94  Aligned_cols=242  Identities=16%  Similarity=0.161  Sum_probs=164.5

Q ss_pred             cCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCcccee
Q 022304            5 ALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFK   84 (299)
Q Consensus         5 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~   84 (299)
                      -++.+++.++|+.++.| ++.+++++.+|..|.+|+|++++|+||||++.......+..|.+++++|++. ++|||+|+.
T Consensus         6 ~ls~~~l~~~l~~y~~~-~~~~~~~l~~G~~n~~y~v~t~~g~~vLK~~~~~~~~~l~~~~~~l~~L~~~-glpvP~~i~   83 (319)
T PRK05231          6 DVSDDELAAFLAPYDLG-ELLSLKGIAEGIENSNFFLTTTQGEYVLTLFERLTAEDLPFFLGLMQHLAAR-GVPVPAPVA   83 (319)
T ss_pred             cCCHHHHHHHHHhcCCc-hhhccchhccccccceEEEEeCCCcEEEEEeccCChHHhHHHHHHHHHHHHC-CCCCCccee
Confidence            57889999999766654 8899999999999999999999999999998633345567789999999987 799999997


Q ss_pred             ecccC-----CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q 022304           85 VGALP-----TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYA  155 (299)
Q Consensus        85 ~~~~~-----~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (299)
                      ..+..     .|..+++++|++|....    ..++++|+.||+||.+...   |+.+..+..       .+ ..|.+.+.
T Consensus        84 ~~~G~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~G~~LA~lH~~~~~---f~~~~~~~~-------~~-~~~~~~~~  152 (319)
T PRK05231         84 RRDGAALGELAGKPAAIVTFLEGKWPRAPTAAHCAEVGEMLARMHLAGRD---FPLERPNLR-------GL-AWWRELAP  152 (319)
T ss_pred             CCCCCEeeeeCCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhhc---CCccCCCCC-------Ch-HHHHHHHH
Confidence            65432     46789999999998652    3478999999999998853   432211110       00 11222211


Q ss_pred             HhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-ccccCCchhhhh
Q 022304          156 EHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-ACYYGHNEAEFG  234 (299)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~~~g~~~~Dla  234 (299)
                      .  +...+....    ...+.+.+..+.+.+...... ..+.++||||+|++|||+++++..+|||| ++++|++.+|+|
T Consensus       153 ~--~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~-~lp~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~~~~~~DlA  225 (319)
T PRK05231        153 R--LLPFLADEQ----AALLEAELAAQLAFLASAAWP-ALPRGVIHADLFRDNVLFEGDRLSGFIDFYFACNDKLLYDVA  225 (319)
T ss_pred             H--HhhccChhH----HHHHHHHHHHHHHhhhccccc-cCCcccCCCCCCCCcEEEECCceEEEEecccccCCchHHHHH
Confidence            1  111110000    011122233333333211111 25779999999999999987765699999 588999999999


Q ss_pred             hhh---h----cCCC----hhhHHHhhhhCCCCCCHHHHHHHH
Q 022304          235 MSW---C----AGFG----GSFYNSYFEVMPKQPGFEKRRDLY  266 (299)
Q Consensus       235 ~~~---~----~~~~----~~f~~~Y~~~~~l~~~~~~r~~~~  266 (299)
                      .+.   +    ..++    .+|++||.+.+|++++..+.+..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~gY~~~~~Ls~~E~~~l~~~  268 (319)
T PRK05231        226 ITLNDWCFEADGSLDATKARALLAAYQSVRPLTAAERAALPVM  268 (319)
T ss_pred             HHHHHHHccCCCCcCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            752   2    1122    579999999999987544444433

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=99.96  E-value=2.9e-28  Score=214.05  Aligned_cols=235  Identities=14%  Similarity=0.163  Sum_probs=166.9

Q ss_pred             chHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc
Q 022304            9 DPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL   88 (299)
Q Consensus         9 ~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~   88 (299)
                      +++..++++++.+ ++.+++++.+|.+|.+|++.+++++||+|+++......+..|++++++|++. +++||+|+.....
T Consensus         2 ~~l~~~l~~y~~~-~~~~i~~i~~G~~n~~y~v~~~~~~~vLr~~~~~~~~~~~~e~~~l~~L~~~-g~~vp~~i~~~~g   79 (296)
T cd05153           2 EELASFLADYDLG-ELLSFEGISAGIENTNYFVTTDSGRYVLTLFEKVSAEELPFFLALLDHLAER-GLPVPRPIADRDG   79 (296)
T ss_pred             HHHHHHHHHcCCC-chhheecccCccccceEEEEeCCCcEEEEEcCCCChHhccHHHHHHHHHHHC-CCCCCccccCCCC
Confidence            6788999888655 7889999999999999999999899999998764455678899999999886 6999999986543


Q ss_pred             C-----CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhh
Q 022304           89 P-----TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRL  159 (299)
Q Consensus        89 ~-----~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  159 (299)
                      .     .+..+++++|++|..+.    ....++|+.|++||.....   |....+       .  .-...|...... +.
T Consensus        80 ~~~~~~~~~~~~l~~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~---~~~~~~-------~--~~~~~~~~~~~~-~~  146 (296)
T cd05153          80 EYLSELAGKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQS---FPGERN-------N--LRGLAWIRELGK-DL  146 (296)
T ss_pred             cEeeeeCCceEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhcc---CCccCC-------C--cCCcHHHHHHHH-Hh
Confidence            2     46789999999998763    3578999999999999853   221100       0  011234322111 01


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh-
Q 022304          160 GYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW-  237 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~-  237 (299)
                      ..        .........+++.++.+...... ..+.++||||+|++|||+++++.++||||+ +++|++++|++.+. 
T Consensus       147 ~~--------~l~~~~~~~~~~~~~~l~~~~~~-~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~g~~~~Dla~~~~  217 (296)
T cd05153         147 LP--------LLSAEDRALLADELARQDAFDPS-DLPRGVIHADLFRDNVLFDGDELSGVIDFYFACTDAFLYDLAITLN  217 (296)
T ss_pred             cc--------ccCHHHHHHHHHHHHHHHhhhhh-cCCCcCCccCcCcccEEEeCCceEEEeehhhhcCchHHHHHHHHHH
Confidence            00        01122233444444444432211 357799999999999999887767999995 78999999999652 


Q ss_pred             --h----cCCC----hhhHHHhhhhCCCCCCHHHHHHHHH
Q 022304          238 --C----AGFG----GSFYNSYFEVMPKQPGFEKRRDLYM  267 (299)
Q Consensus       238 --~----~~~~----~~f~~~Y~~~~~l~~~~~~r~~~~~  267 (299)
                        +    .+++    +.|+++|++..|++++....+..+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~gY~~~~~ls~~e~~~l~~~~  257 (296)
T cd05153         218 DWCFDEDGALDPERAQALLAGYQAVRPLTEAERAALPIML  257 (296)
T ss_pred             HHHhCccCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence              1    1123    5799999999999876555555544

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=99.96  E-value=5.6e-28  Score=213.24  Aligned_cols=241  Identities=15%  Similarity=0.178  Sum_probs=168.4

Q ss_pred             cCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccce
Q 022304            5 ALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPF   83 (299)
Q Consensus         5 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~   83 (299)
                      -++.++|.++|.+++.+ .+.+++++.+|..|.+|++++++|+||+|++... ....+..|.+++++|++. ++|||+++
T Consensus         6 ~~~~~~l~~~l~~y~~~-~~~~i~~~~~G~~n~~y~v~t~~~~~vLK~~~~~~~~~~i~~e~~~l~~L~~~-g~pvp~~i   83 (307)
T TIGR00938         6 SVSDEEMSSFLDGYDLG-ELLSLKGIAEGVENSNYLLTTDVGRYILTLYEKRVKAEELPFFLALTTHLAAR-GLPVPKPV   83 (307)
T ss_pred             cCCHHHHHHHHHhcCCC-CceeccccCCccccceEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHHHHHHC-CCCCCccc
Confidence            35778999999988665 6889999999999999999999999999998653 345677899999999886 68999999


Q ss_pred             eecccC-----CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHH
Q 022304           84 KVGALP-----TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFY  154 (299)
Q Consensus        84 ~~~~~~-----~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (299)
                      ......     .|..+++++|++|....    ...+++|+.||+||.....   |+.+...        ..+...|...+
T Consensus        84 ~t~~g~~~~~~~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~---~~~~~~~--------~~~~~~w~~~~  152 (307)
T TIGR00938        84 KSRDGRQLSTLAGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAH---FPENRKN--------SLRLEAWHILA  152 (307)
T ss_pred             cCCCCCeehhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhcc---CCCCCCC--------CCChHHHHHHH
Confidence            865432     46789999999998653    3468999999999998752   3322110        01123454433


Q ss_pred             HHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhh
Q 022304          155 AEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEF  233 (299)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dl  233 (299)
                      ... . ....     .......+.+.+.++.+...... ..+.++||||+|++|+++++++..+||||+ +++|++.+|+
T Consensus       153 ~~~-~-~~~~-----~l~~~~~~~l~~~~~~l~~~~~~-~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~~~~~~DL  224 (307)
T TIGR00938       153 EKC-F-EAAP-----QLEAHMGAELDKELDYLDKFWPR-DLPRGVIHADLFPDNVLFDGDSVKGVIDFYFACTDARAYDL  224 (307)
T ss_pred             Hhh-h-hccc-----ccCHHHHHHHHHHHHHHHhhhhh-cCCCccCCCCCCcCcEEEECCceEEEeecccccCcchHHHH
Confidence            211 0 0000     01111122333333333322222 357899999999999999888767999995 7899999999


Q ss_pred             hhhh---h----cCCC----hhhHHHhhhhCCCCCCHHHHHHHH
Q 022304          234 GMSW---C----AGFG----GSFYNSYFEVMPKQPGFEKRRDLY  266 (299)
Q Consensus       234 a~~~---~----~~~~----~~f~~~Y~~~~~l~~~~~~r~~~~  266 (299)
                      +.+.   .    ..+.    ..|++||.+..|+++...+.+...
T Consensus       225 A~~~~~~~~~~~~~~~~~~~~~~l~gY~~~~~Ls~~e~~~l~~~  268 (307)
T TIGR00938       225 AITVNAWCFDADDHFDADHAKALIKGYHQSRPLTEEEKAAFPVL  268 (307)
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9752   2    1233    689999999999997655544444

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=99.96  E-value=7.3e-27  Score=204.95  Aligned_cols=241  Identities=18%  Similarity=0.183  Sum_probs=167.8

Q ss_pred             ccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccc
Q 022304            4 AALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRP   82 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~   82 (299)
                      ...+.+++...|...++| ...+..++.+ ..|.||+|++++|+||||++++. +...+..|.+++++|+++ +++||.|
T Consensus         9 ~~~~~~~~~~~l~~~~~g-~~~~~~~l~s-~eN~~f~~~~~~g~~iLki~~~~~~~~~i~~el~~l~~La~~-~i~v~~P   85 (331)
T COG2334           9 TPLTSDEAAAALEAYHYG-LDGSLRGLNS-EENSNFRVQTEDGRYILKIYRPGWTRAEIPFELALLQHLAER-GIPVPAP   85 (331)
T ss_pred             cCcChHHHHHHHHhcCcC-cccccccccc-ccCceEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHc-CCCCCCC
Confidence            467788899999888777 4556777775 78999999999999999999974 667889999999999997 6888888


Q ss_pred             eeecccC-----CC--ceEEEEecccCCCCC-----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCH
Q 022304           83 FKVGALP-----TG--GSYIIMEFIEFGSSR-----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNW  150 (299)
Q Consensus        83 ~~~~~~~-----~~--~~~~v~e~l~G~~~~-----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  150 (299)
                      +..-+..     .+  +.+.+.+|++|..+.     .+.+.+|++||+||.....   |.+.+++...    ...|    
T Consensus        86 l~~~dG~~l~~~~~~~r~a~lf~~l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~---f~~~~p~~~~----~~~w----  154 (331)
T COG2334          86 LPSLDGELLEALSGGPRPAALFEYLPGRPLERDDNAEQLEELGRMLGRLHLALRG---FPFERPNALR----RLEW----  154 (331)
T ss_pred             ccCCCcchhhhccCCceeEEEEEecCCcCcCCCCcHHHHHHHHHHHHHHHHHhCc---CCccCCCccc----ccch----
Confidence            6554432     57  899999999998764     3578999999999999964   5443443321    1223    


Q ss_pred             HHHHHHhhhHHHHHHHHhhcCChHHHH----HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCC-eEEEcc-cc
Q 022304          151 IEFYAEHRLGYQLKLALDQYGDSTIYQ----RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGE-PVILDP-AC  224 (299)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~-~~iID~-~~  224 (299)
                      .-....  ...    ......+..+..    .++++.+.++..++.  .+..+||||+|++||++++++. +++||| +|
T Consensus       155 ~~~~~~--~~~----~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~--~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa  226 (331)
T COG2334         155 DILEPR--ALL----RLDLVEPEDLRAALLAALDRLLARLPAHLPA--LGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDA  226 (331)
T ss_pred             hhhcch--hhh----hhcccCchhhHHHHHHHHHHHHhhchhhCCc--ccceeeecCCCccceeEcCCCCeeeEEEcccc
Confidence            210000  000    000011222223    333444444443332  1234999999999999988764 899998 68


Q ss_pred             ccCCchhhhhhhh---hcC--CC----hhhHHHhhhhCCCCCCHHHHHHHH
Q 022304          225 YYGHNEAEFGMSW---CAG--FG----GSFYNSYFEVMPKQPGFEKRRDLY  266 (299)
Q Consensus       225 ~~g~~~~Dla~~~---~~~--~~----~~f~~~Y~~~~~l~~~~~~r~~~~  266 (299)
                      ++|+.++|++++.   ...  ..    .+|++||++++|+++...+-+..+
T Consensus       227 ~~~~~i~DlAi~l~~~~~d~~~~~~~~~a~l~GY~~v~pl~~~El~~Lp~l  277 (331)
T COG2334         227 GYGWFIYDLAIALNAWNGDEADPRAAIAAFLEGYEEVRPLTAAELELLPDL  277 (331)
T ss_pred             ccchHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999874   221  11    489999999999987554444433

>PRK11768 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=1.4e-25  Score=199.08  Aligned_cols=249  Identities=16%  Similarity=0.136  Sum_probs=164.8

Q ss_pred             cccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCC
Q 022304            3 VAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRA   79 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~v   79 (299)
                      ...++.+.|.+.+...|+. .-..+.+++ |..|.||+|+++++ +||+|++++.  ....+..|++++.+|++. ++||
T Consensus         8 ~~~l~p~~~~~a~~~~g~~-~~~~~~~l~-s~eN~vy~v~~~~~~~~vlKv~r~~~~~~~~i~~E~~~l~~L~~~-gipv   84 (325)
T PRK11768          8 FQTLTPDLILDALESLGLR-VDGRLLALN-SYENRVYQFGDEDGRRVVAKFYRPERWSDAQILEEHAFALELAEA-EIPV   84 (325)
T ss_pred             CCCCChHHHHHHHHHcCCC-CccceEeec-cccceEEEEecCCCCEEEEEEcCcccCCHHHHHHHHHHHHHHHHC-CCCC
Confidence            3578999999999877542 123456675 67899999999766 8999998753  346688999999999986 6898


Q ss_pred             ccceeec-ccC---CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHH
Q 022304           80 PRPFKVG-ALP---TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWI  151 (299)
Q Consensus        80 P~~~~~~-~~~---~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  151 (299)
                      |.|+..+ .+-   +|..+.+++|++|+...    ..++++|+.||+||.++..   +++.+.         ..|  ++.
T Consensus        85 ~~p~~~~G~~~~~~~g~~~~l~~~~~G~~~~~~~~~~~~~lG~~LarlH~~~~~---~~~~~r---------~~~--~~~  150 (325)
T PRK11768         85 VAPLAFNGQTLHEHQGFRFALFPRRGGRAPELDNLDQLEWVGRFLGRIHQVGAK---RPFEHR---------PTL--DLQ  150 (325)
T ss_pred             CCCccCCCCEEEEECCEEEEEEeeeCCCCCCCCCHHHHHHHHHHHHHHHhhccC---CCCCCC---------CcC--CHH
Confidence            8875322 110   46788999999998753    4578999999999998863   122110         112  111


Q ss_pred             HHHHHhhhHHHHHHHHhhcCChH----HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-cccc
Q 022304          152 EFYAEHRLGYQLKLALDQYGDST----IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-ACYY  226 (299)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~~~  226 (299)
                      .+..+  ....+.  .....+..    +.+.++++.+.+...+...+.+.++||||+|++|||++ + .++|||| +|++
T Consensus       151 ~~~~~--~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~liHgD~h~~NvL~~-d-~~~iIDFDd~~~  224 (325)
T PRK11768        151 EYGIE--PRDWLL--ASDLIPSDLRPAYLAAADQLLAAVEACWARGDVRLLRLHGDCHPGNILWR-D-GPHFVDLDDARM  224 (325)
T ss_pred             HHHHH--HHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceecCCCchhcccc-C-CcEEEeCCCCCC
Confidence            11110  000010  01111111    22334444444444333213577999999999999995 4 4899999 5889


Q ss_pred             CCchhhhhhhhhcCC------ChhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHH
Q 022304          227 GHNEAEFGMSWCAGF------GGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNH  274 (299)
Q Consensus       227 g~~~~Dla~~~~~~~------~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~  274 (299)
                      |++++||+++..+..      -.+|++||++++|+++.....+..+...+.+.+
T Consensus       225 g~~i~DLa~~l~~~~~~~~~~~~~~l~GY~~~r~l~~~e~~~l~~l~~lR~~~~  278 (325)
T PRK11768        225 GPAVQDLWMLLSGDRAEQLMQLETLLEGYEEFCEFDPRELALIEPLRALRLIHY  278 (325)
T ss_pred             CCHHHHHHHHhccCcchhHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999998653221      247999999999999876666666665555543

>TIGR02721 ycfN_thiK thiamine kinase

Probab=99.93  E-value=1.2e-24  Score=187.20  Aligned_cols=207  Identities=16%  Similarity=0.140  Sum_probs=138.2

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCCc---chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIGP---SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~---~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++++.+|.+|.+|++++++++||+|+++....   ...+.|.++++.++.. ++ +|+++..+.     .+++++|++|.
T Consensus         1 ~~~~~~G~tn~~y~~~~~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~-g~-~P~~i~~~~-----~~~v~e~i~G~   73 (256)
T TIGR02721         1 VQTLSGGLTNRSWRIEHPGISFVWRPQSPVCKALGVDRQREYQILQALSAL-GL-APKPILVNE-----HWLLVEWLEGE   73 (256)
T ss_pred             CCcCCCcCcCCeEEEEeCCccEEEeeCCcccccccCcHHHHHHHHHHHHhc-CC-CCceEEEeC-----CEEEEEeccCc
Confidence            35778999999999998877999999875322   2357899999999876 44 799998863     37999999998


Q ss_pred             CCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHH
Q 022304          104 SSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIY  176 (299)
Q Consensus       104 ~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (299)
                      +++       ....++++.|+++|+.+.+    +.+               .+..     .++..+..........+   
T Consensus        74 ~~~~~~~~~~~~~~~la~~l~~lH~~~~~----~~~---------------~~~~-----~~~~~~~~~l~~~~~~~---  126 (256)
T TIGR02721        74 VITLDQFVALDLLLELAALLHQLHSQPRF----GYP---------------LSLK-----ARIAHYWLQIDPARRTP---  126 (256)
T ss_pred             ccccccccCchhHHHHHHHHHHHhCCCCC----CCC---------------CCHH-----HHHHHHHHhcccccCCh---
Confidence            753       2468999999999998752    110               0000     01111111111111111   


Q ss_pred             HHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhhc---CCChhhHHHhhhh
Q 022304          177 QRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWCA---GFGGSFYNSYFEV  252 (299)
Q Consensus       177 ~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~~---~~~~~f~~~Y~~~  252 (299)
                       .+.++.+.+.......+.++++||||++++|||+++++ .+||||+ +.+|||++|||.+...   ...+.|++.|.+.
T Consensus       127 -~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gdp~~DLa~~~~~~~~~~~~~~l~~Y~~~  204 (256)
T TIGR02721       127 -EWLRLYKQFRSAPEPAPLPLAPLHMDVHAYNLVVTPQG-LKLIDWEYASDGDIALELAAIIRANDEEQQQDFVQRYCQR  204 (256)
T ss_pred             -HHHHHHHHHHhccCCCCCCCeeecCCCCcCcEEEeCCC-CEEEeccccCcCCHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence             12233333322222113578999999999999998776 7899995 7899999999986432   1225799999988


Q ss_pred             CCCC--CCHHHHHHHHHHH
Q 022304          253 MPKQ--PGFEKRRDLYMLY  269 (299)
Q Consensus       253 ~~l~--~~~~~r~~~~~l~  269 (299)
                      .+..  +.+..++..|..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~  223 (256)
T TIGR02721       205 RRIYSISVLWRQVKAWQPW  223 (256)
T ss_pred             hCCccHHHHHHHHHHHHHH
Confidence            6543  3455555555433

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=99.92  E-value=1.7e-23  Score=178.71  Aligned_cols=218  Identities=15%  Similarity=0.127  Sum_probs=142.6

Q ss_pred             eeeeeCCccc-cceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCC
Q 022304           26 KICPVGGGCI-NLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        26 ~~~~~~~G~~-n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      .+++|..|.+ |.+|+++.+++++|+|+.+......+.+|+++++.|++.  +++|+++..+.. .+..+++|++++|.+
T Consensus         2 ~~~~~~~g~~~~~v~~~~~~~~~~~vk~~~~~~~~~~~~E~~~l~~l~~~--~~vP~v~~~~~~-~~~~~lv~e~i~G~~   78 (244)
T cd05150           2 RWERVTEGQSGATVYRLDGKNPGLYLKIAPSGPTYELEREAERLRWLAGK--LPVPEVIDYGSD-DGRAWLLTSAVPGVP   78 (244)
T ss_pred             cceecCCCCCcCeEEEEcCCCCcEEEEecCCCcccchHHHHHHHHHHHhc--CCCCeEEEEEec-CCccEEEEEeeCCcc
Confidence            3568877865 899999987779999999764345678999999999875  899999988754 467899999999987


Q ss_pred             CC---------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHH-Hh-hcCCh
Q 022304          105 SR---------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLA-LD-QYGDS  173 (299)
Q Consensus       105 ~~---------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~  173 (299)
                      +.         ....++|+.+++||+.+.+.  +.+.     +          .+......  ........ .. ...+.
T Consensus        79 l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~--~~~~-----~----------~~~~~~~~--~~~~~~~~~~~~~~~~~  139 (244)
T cd05150          79 AAALWEELEPERLVDALAEALRRLHALPVAD--CPFD-----R----------RLDRRLAE--ARARVENGLVDEDDFDD  139 (244)
T ss_pred             HhHhhcccCHHHHHHHHHHHHHHHhcCCccc--CCcc-----h----------hHHHHHHH--HHHHHhcCCcChhhCcH
Confidence            53         23678999999999987521  1110     0          00000000  00000000 00 00000


Q ss_pred             HH-HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh---cC-----CCh
Q 022304          174 TI-YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC---AG-----FGG  243 (299)
Q Consensus       174 ~~-~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~---~~-----~~~  243 (299)
                      .. .....++.+.+...... ..++++||||+|++|||+++++.++||||+ +.+|||++|++.+..   ..     ..+
T Consensus       140 ~~~~~~~~~~~~~l~~~~~~-~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~gdp~~Dla~~~~~~~~~~~~~~~~~  218 (244)
T cd05150         140 ERRGWSAEELYAELEATRPA-EEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVADRYQDLALAVRSLRENLGGEEYAA  218 (244)
T ss_pred             hhcCCCHHHHHHHHHhhCCC-cCceEEECCCCCCccEEEeCCcEEEEEEccccccccHHHHHHHHHHHhhhhcCChHHHH
Confidence            00 01122333333332222 357899999999999999887767999996 679999999997631   11     225


Q ss_pred             hhHHHhhhhCCCCCCHHHHHHHHHHHH
Q 022304          244 SFYNSYFEVMPKQPGFEKRRDLYMLYH  270 (299)
Q Consensus       244 ~f~~~Y~~~~~l~~~~~~r~~~~~l~~  270 (299)
                      +|+++|.... .+   .+|+.+|+++.
T Consensus       219 ~f~~~Y~~~~-~~---~~~~~~~~~~~  241 (244)
T cd05150         219 RFLDRYGIDA-PD---PEKLAYYRLLD  241 (244)
T ss_pred             HHHHHcCCCC-CC---HHHHHHHHHHh
Confidence            7899997631 22   58899987764

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=99.91  E-value=3.3e-23  Score=176.01  Aligned_cols=216  Identities=16%  Similarity=0.097  Sum_probs=135.5

Q ss_pred             eeeeC-CccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCC--CceEEEEecccC
Q 022304           27 ICPVG-GGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPT--GGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~-~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~--~~~~~v~e~l~G  102 (299)
                      ++++. +|..|.+|++.   ++||+|+++.. ....++.|.+++++|++..++++|+++..+...+  +..|++|++++|
T Consensus         2 ~~~~~~gG~~n~vy~~~---~~~VlR~~~~~~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i~G   78 (235)
T cd05155           2 IEPVDSGGTDNATFRLG---DDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWLEG   78 (235)
T ss_pred             ceeccCCCcccceEEcC---CceEEEcCCccchHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEeecC
Confidence            46775 66778999983   47999998763 3456889999999998766799999998765422  356999999999


Q ss_pred             CCCC--------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChH
Q 022304          103 GSSR--------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDST  174 (299)
Q Consensus       103 ~~~~--------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (299)
                      .++.        ....++|+.|++||+.+.+.  .....  .....  .......|......     ....... ..+. 
T Consensus        79 ~~l~~~~~~~~~~l~~~la~~l~~LH~i~~~~--~~~~~--~~~~~--~~~~~~~~~~~~~~-----~~~~~~~-~l~~-  145 (235)
T cd05155          79 ETATAAALSDPSEFAEDLADFLAALRQIDPSG--GPPAG--RHNFL--RGGDLAVRDAETRE-----AIEALEG-VIDV-  145 (235)
T ss_pred             CCCCccccCCHHHHHHHHHHHHHHHhCCCccc--CCccC--Ccccc--CCCChhHhhHHHHH-----HHHHccc-ccCh-
Confidence            8763        13578999999999988632  11100  00000  00001122211100     0000000 0111 


Q ss_pred             HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh--c-CCChhhHHHhh
Q 022304          175 IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC--A-GFGGSFYNSYF  250 (299)
Q Consensus       175 ~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~--~-~~~~~f~~~Y~  250 (299)
                        +.+.++.+...+...  ..+++|||||||++|||+++++.++||||+ +.+|||++|++.++.  . ...+.|++.|+
T Consensus       146 --~~~~~~~~~~~~~~~--~~~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~gDp~~Dla~~~~~~~~~~~~~~~~~y~  221 (235)
T cd05155         146 --DAARALWEAALRAPW--WGPPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVGDPACDLAIAWTLLDEDSRAAFRAALG  221 (235)
T ss_pred             --HHHHHHHHHHhcccc--cCCceEEeCCCCCCcEEEECCCEEEEEeCcccCcCChHHHHHHHHhcCCHHHHHHHHHHcC
Confidence              222233332222222  257899999999999999877667899995 789999999997642  1 22357899998


Q ss_pred             hhCCCCCCHHHHHHHH
Q 022304          251 EVMPKQPGFEKRRDLY  266 (299)
Q Consensus       251 ~~~~l~~~~~~r~~~~  266 (299)
                       +.+.   -..|.++|
T Consensus       222 -~~~~---~~~~~~~~  233 (235)
T cd05155         222 -VDDA---TWARGRGW  233 (235)
T ss_pred             -CCHH---HHHHhccc
Confidence             4332   34666655

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PLN02876 acyl-CoA dehydrogenase

Probab=99.91  E-value=1.5e-22  Score=199.64  Aligned_cols=251  Identities=17%  Similarity=0.212  Sum_probs=158.6

Q ss_pred             CCcchHHHHHHhcCCC--cc--eeeeeeeCCccccceEEEEeCCc----cEEEEecCCC----CcchHHHHHHHHHHHHh
Q 022304            6 LSDDPIREWILSEGKA--TH--ITKICPVGGGCINLASRYGTDAG----SFFVKTNRSI----GPSMFEGEALGLGAMYE   73 (299)
Q Consensus         6 ~~~~~i~~~l~~~~~~--~~--~~~~~~~~~G~~n~~y~v~~~~g----~~vlK~~~~~----~~~~~~~E~~~l~~L~~   73 (299)
                      ++.+.+..||.+...+  ..  ..+++++++|.+|.+|+++..++    +||+|..+..    ....+.+|+++++.|..
T Consensus        18 ~d~~~l~~~l~~~~~~~~~~~~~~~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~   97 (822)
T PLN02876         18 FDEDALLRYAAANVAGFPVPPSTFKVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGE   97 (822)
T ss_pred             CCHHHHHHHHHHhCCCcCCCccceeEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhh
Confidence            6678899999977322  22  35799999999999999987653    7999998652    23468899999999986


Q ss_pred             cCCCCCccceeecccC--CCceEEEEecccCCCCC-------------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 022304           74 TRTIRAPRPFKVGALP--TGGSYIIMEFIEFGSSR-------------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIG  138 (299)
Q Consensus        74 ~~~~~vP~~~~~~~~~--~~~~~~v~e~l~G~~~~-------------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g  138 (299)
                      +.++|||+++..+...  .|.+|+||||++|....             ....++++.|++||++...  ..|+...   |
T Consensus        98 ~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~vd~~--~~gl~~~---g  172 (822)
T PLN02876         98 HTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSADVD--AIGLGKY---G  172 (822)
T ss_pred             cCCCCCCcEEEEecCCCcCCCceEEEEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCCCch--hcChhhc---C
Confidence            5579999999875432  47899999999997531             1246799999999998753  2332210   1


Q ss_pred             ccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcC--ChHHHHHHHHHHHHHhccccCCC---CCcceeccCCCCCCeeecC
Q 022304          139 STPQINKWTSNWIEFYAEHRLGYQLKLALDQYG--DSTIYQRGHRLMKNLAPLFEGVN---VEPCLLHGDLWSGNISSDK  213 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~---~~~~liHgDl~~~Nvl~~~  213 (299)
                         ..    .+|..    .++..+.+.......  .......+.++.+.+....+...   .+++||||||+++|||+++
T Consensus       173 ---~~----~~~~~----~~l~~w~~~~~~~~~~~~~~~~~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~  241 (822)
T PLN02876        173 ---RR----DNYCK----RQVERWAKQYLASTGEGKPPRNPKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHP  241 (822)
T ss_pred             ---CC----CchHH----HHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcC
Confidence               00    11110    011111111111000  00001223333344433332211   1578999999999999975


Q ss_pred             C--CCeEEEccc-cccCCchhhhhhhhh----c-------------------CCC--hhhHHHhhhhCCCCCCHHHHHHH
Q 022304          214 N--GEPVILDPA-CYYGHNEAEFGMSWC----A-------------------GFG--GSFYNSYFEVMPKQPGFEKRRDL  265 (299)
Q Consensus       214 ~--~~~~iID~~-~~~g~~~~Dla~~~~----~-------------------~~~--~~f~~~Y~~~~~l~~~~~~r~~~  265 (299)
                      +  +..+||||+ +++|||..||+.++.    .                   |++  +++++.|++..+.+.. ...+.+
T Consensus       242 ~~~~v~aVLDWE~a~~GdPl~DLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~e~~~~Y~~~~g~~~~-~~~~~~  320 (822)
T PLN02876        242 TEDRVIGILDWELSTLGNQMCDVAYSCLPYIVDINLDNQQVGKGFEFTGIPEGIPSLPEYLAEYCSASGKPWP-AANWKF  320 (822)
T ss_pred             CCCeEEEEEeeeccccCChHHHHHHHhhhccccccCCccccccccccCcCCCCCCCHHHHHHHHHHHhCCCCC-CcccHH
Confidence            3  336899996 789999999996521    0                   222  4799999998664311 134566


Q ss_pred             HHHHHHHH
Q 022304          266 YMLYHYLN  273 (299)
Q Consensus       266 ~~l~~~l~  273 (299)
                      |..+..+.
T Consensus       321 ~~~~~~~r  328 (822)
T PLN02876        321 YVAFSLFR  328 (822)
T ss_pred             HHHHHHHH
Confidence            66555543

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=99.90  E-value=4.3e-23  Score=173.61  Aligned_cols=191  Identities=15%  Similarity=0.195  Sum_probs=128.8

Q ss_pred             eeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           25 TKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+++++++|.+|.+|+.  .++++|+|++++. ....+++|+++++.|+.. ++|||+|+..+.. .+..+++|+|++|.
T Consensus         4 ~~~~~i~~G~t~~~y~~--~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~-glpvP~~~~~~~~-~~~~glv~e~i~G~   79 (226)
T TIGR02172         4 SDWTQTGEGGNGESYTH--KTGKWMLKLYNPGFDKETIKREFDASRKVFSL-GIPTPHPFDLVED-GGRLGLIYELIVGK   79 (226)
T ss_pred             hHheeecCCCCcceeEe--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHc-CCCCCceEEEEec-CCeeeeeeeecCCc
Confidence            46789999999999984  3558999999863 345578999999999975 7999999998754 45567899999997


Q ss_pred             CC-----C-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcC
Q 022304          104 SS-----R-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYG  171 (299)
Q Consensus       104 ~~-----~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (299)
                      +.     .       .....+|+.+++||+.+.+.  .+++                .   ..  .++...+....  ..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~--~~l~----------------~---~~--~~~~~~l~~~~--~~  134 (226)
T TIGR02172        80 RSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDT--STFQ----------------S---YK--EKIRKFIEEKD--FV  134 (226)
T ss_pred             cchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCC--CcHH----------------H---HH--HHHHHHHHhcc--CC
Confidence            51     1       13467888888999976531  1110                0   00  01111111110  01


Q ss_pred             ChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh-cCCC----hhh
Q 022304          172 DSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC-AGFG----GSF  245 (299)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~-~~~~----~~f  245 (299)
                      +....+.+.++++   . +   +.++++||||+|++||++++++ ++||||+ +.+|||.+||+.++. ..++    ..|
T Consensus       135 ~~~~~~~l~~~l~---~-~---~~~~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~Gdp~~Dla~~~~~~~~~~~~~~~~  206 (226)
T TIGR02172       135 PKDYKEKARAFIK---E-V---PDTSTCLHGDFQIGNLITSGKG-TYWIDLGDFGYGNPLFDLGLLFMFCHYLDDDKLQA  206 (226)
T ss_pred             CHHHHHHHHHHHH---h-C---CCCCceEecCCCCCcEEEcCCC-cEEEechhcCcCCHHHHHHHHHHhccCChhHHHHH
Confidence            1112222222222   1 2   3466889999999999998877 9999996 789999999998642 3333    467


Q ss_pred             HHHhhhh
Q 022304          246 YNSYFEV  252 (299)
Q Consensus       246 ~~~Y~~~  252 (299)
                      +..|+..
T Consensus       207 ~~~y~~~  213 (226)
T TIGR02172       207 IFHMNAE  213 (226)
T ss_pred             HHhcCHH
Confidence            8888753

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=99.90  E-value=2.5e-23  Score=176.02  Aligned_cols=191  Identities=26%  Similarity=0.354  Sum_probs=122.2

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccC--CCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP--TGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~--~~~~~~v~e~l~G  102 (299)
                      .++++++|.+|.+|++++++++||+|+++.. ....+..|.+++++|+++ ++|||+++..+...  .+..+++|++++|
T Consensus         1 ~i~~l~~G~~n~~~~v~~~~~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~-~~pvP~~~~~~~~~~~~~~~~~~~~~i~g   79 (239)
T PF01636_consen    1 HIRPLSGGFSNRVYRVTTDDGRYVLKFYRPPDAAERLRREAAVLRQLAEH-GIPVPRVLAFDTSDEFNGFPYLLMEYIPG   79 (239)
T ss_dssp             -EEEEEESSSSEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHHT-TSBS--EEEEEEETEETSEEEEEEEEESS
T ss_pred             CCccCCCCCeeeEEEEEECCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCCceEEeecccccccccceEEEEEecc
Confidence            4789999999999999999999999999764 346688999999999987 56999999854332  4568999999999


Q ss_pred             CCCC---------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH--hhhHHHHHHHHhhcC
Q 022304          103 GSSR---------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE--HRLGYQLKLALDQYG  171 (299)
Q Consensus       103 ~~~~---------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  171 (299)
                      .++.         ....++|+.|++||+.+.+.  .+.                ..+..+...  ............. .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~-~  140 (239)
T PF01636_consen   80 RPLDDELSPEQRPELLRQLGRALAQLHQVPPPF--SPF----------------ADWPEWRLEFLRQLESWTARLRAS-E  140 (239)
T ss_dssp             EEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTC--CCH----------------THHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred             ccccccccccccccccccchhhhhhcccccccc--ccc----------------ccccccccccccccccccccccch-h
Confidence            8642         23578999999999996321  110                011111110  0011110001111 1


Q ss_pred             ChHHHHHHHH-HHHHHhccccCCCCCcceeccCCCCCCeeec-CCCCeEEEccc-cccCCchhhhhhhh
Q 022304          172 DSTIYQRGHR-LMKNLAPLFEGVNVEPCLLHGDLWSGNISSD-KNGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       172 ~~~~~~~~~~-~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~-~~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      .......+.+ +.+.+...+.. ..+.++||||+|++|||++ +++.++||||+ +.+|+|++|++.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~~~~~Dla~~~  208 (239)
T PF01636_consen  141 LFDDLEELEERLLQELEALLPK-PLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWGDPAYDLARLL  208 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC-CSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEEETHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhhhcc-CCCcEEEEeccccccceeeeccceeEEEecccceECCHHHHHHHHH
Confidence            1111223333 55555544432 3688999999999999998 34434899995 68999999999764

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=99.90  E-value=3.3e-22  Score=176.96  Aligned_cols=224  Identities=17%  Similarity=0.144  Sum_probs=141.4

Q ss_pred             cceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCceEEEEecccCCCCC----
Q 022304           36 NLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGSYIIMEFIEFGSSR----  106 (299)
Q Consensus        36 n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~~~v~e~l~G~~~~----  106 (299)
                      +.+|+|+|++|+||||..+.. ...+..|.+++++|+++ +++||+|+.+.+..     ++..+.+++|++|.+..    
T Consensus        10 ~~v~~v~t~~g~~~LK~~~~~-~~~~~~~~~~~~~L~~~-g~~vp~~i~t~~g~~~~~~~~~~~~l~~~i~G~~~~~~~~   87 (313)
T TIGR02906        10 RNVYKVETDSGNKCLKKINYP-PERLLFILGAQEHLRKN-GFNIPKILKTKDGELYVKYNGDLYVLTEWIEGRECDFNNP   87 (313)
T ss_pred             ccEEEEEeCCCCeEEEEcCCC-HHHHHHHHHHHHHHHHc-CCCCCceeecCCCCEEEEECCEEEEEehhccCcCCCCCCH
Confidence            459999999999999997532 34467789999999987 57999999875432     46789999999998753    


Q ss_pred             CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHh--hhHHHHHHHHhhc-CC---hHHHHHHH
Q 022304          107 GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEH--RLGYQLKLALDQY-GD---STIYQRGH  180 (299)
Q Consensus       107 ~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~---~~~~~~~~  180 (299)
                      ..+.++|+.||+||.....   |..+..    ..+. .. ...|.+.+...  .+........... .+   ....+.+.
T Consensus        88 ~~~~~~g~~La~lH~~~~~---~~~~~~----~~~~-~~-~~~w~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (313)
T TIGR02906        88 IDLKKAAKGLALFHHASKG---YVPPDG----SKIR-SK-LGKWPKQFEKRLKELERFKKIALEKKYKDEFDKLYLKEVD  158 (313)
T ss_pred             HHHHHHHHHHHHHHHhCCC---CCCCCc----chhh-cc-ccchHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Confidence            3578999999999999963   211110    0010 01 12344433211  1221111111100 01   00111111


Q ss_pred             H-------HHHHHh-----ccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh---h---cCC
Q 022304          181 R-------LMKNLA-----PLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW---C---AGF  241 (299)
Q Consensus       181 ~-------~~~~l~-----~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~---~---~~~  241 (299)
                      .       .++.+.     .+......+.++||||+|++||++++ +.++||||+ +++|++++||+.+.   +   ..+
T Consensus       159 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~~~~~~~Dla~~l~~~~~~~~~~  237 (313)
T TIGR02906       159 YFLERGKKALELLNKSKYYDLCKEAKKIRGFCHQDYAYHNILLKD-NEVYVIDFDYCTIDLPVRDLRKLIIKLMKKNGVW  237 (313)
T ss_pred             HHHHHHHHHHHHHhhCcHHHHHHhhcCcCceEcCCCCcccEEEeC-CcEEEEECcccccCCcHHHHHHHHHHHHHhccCC
Confidence            1       111111     11111124689999999999999987 458999996 78999999999652   2   234


Q ss_pred             C----hhhHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 022304          242 G----GSFYNSYFEVMPKQPGFEKRRDLYMLYHY  271 (299)
Q Consensus       242 ~----~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~  271 (299)
                      +    ..|+++|.+..|+++.....+..+.+++.
T Consensus       238 d~~~~~~~l~gY~~~~~L~~~e~~~l~~~l~~p~  271 (313)
T TIGR02906       238 DLEKAKEIIEAYSSINPLSKEEKEVLYIDLAFPH  271 (313)
T ss_pred             CHHHHHHHHHHhhccCCCCHHHHHHHHHHHhChH
Confidence            4    47999999999999765555555544443

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=99.90  E-value=8.6e-22  Score=170.55  Aligned_cols=212  Identities=14%  Similarity=0.073  Sum_probs=134.9

Q ss_pred             CCCcceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           19 GKATHITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        19 ~~~~~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      |+.....++...+.|+.|.+|++...+| ++|+|+++.. ....+++|.++++.|+.+.++|+|+++..+     ..+++
T Consensus         8 ~~~~~~~~~~~~~~g~~~~v~~i~~~~g~~~VlR~p~~~~~~~~l~rE~~vL~~L~~~l~vpvP~~~~~~-----~~~~~   82 (276)
T cd05152           8 GLTLKPETLSLNESGLDFQVVFAKDTDGVPWVLRIPRRPDVSERAAAEKRVLALVRKHLPVQVPDWRVHT-----PELIA   82 (276)
T ss_pred             CCccCCCcceecCCcceeEEEEEEcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCCCCceeeec-----CceEE
Confidence            5555666788888888899999976544 8999999752 234578999999999986678889876543     23677


Q ss_pred             EecccCCCCC--------------------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q 022304           97 MEFIEFGSSR--------------------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE  156 (299)
Q Consensus        97 ~e~l~G~~~~--------------------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (299)
                      |++++|.+..                    ..+.++|++|++||+.+...  ++..     | .+.  .........   
T Consensus        83 y~~i~G~p~~~~~~~~~~~~~~~~~~~~~~~la~~la~~La~LH~i~~~~--~~~~-----g-~~~--~~~~~~~~~---  149 (276)
T cd05152          83 YPKLPGVPAATIDPEIGEYVWNFDHKNPPEVFIESLAKALAELHSIPQDE--AEAA-----G-IPV--ETPEEVRQT---  149 (276)
T ss_pred             EeccCCCcccccCcccccceecccCCCcCHHHHHHHHHHHHHHhCCChhh--cccc-----C-CCC--CCHHHHHHH---
Confidence            8888887531                    12578999999999988631  1110     0 000  000111111   


Q ss_pred             hhhHHHHHHHHhhc-CChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCC-CeEEEccc-cccCCchhhh
Q 022304          157 HRLGYQLKLALDQY-GDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNG-EPVILDPA-CYYGHNEAEF  233 (299)
Q Consensus       157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~-~~~iID~~-~~~g~~~~Dl  233 (299)
                        +...++...... .+..   .++++.+.+..... .+.++++||||+|++|||+++++ ..+||||+ +++|||++||
T Consensus       150 --~~~~l~~~~~~~~~~~~---l~~~~~~~L~~~~~-~~~~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iGDPa~Dl  223 (276)
T cd05152         150 --MADRMDRVKEEFGVSEA---LWNRWQAWLDDDSY-WPRHTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPARDF  223 (276)
T ss_pred             --HHHHHHHHHHhcCCCHH---HHHHHHHHHhhcCC-CCCCCeeEeCCCCCCcEEEeCCCCEEEEECcHhcccCCHHHHH
Confidence              111112211111 1112   22222222321111 13578999999999999998744 46899995 7899999999


Q ss_pred             hhhh-hc--CCChhhHHHhhhhCC
Q 022304          234 GMSW-CA--GFGGSFYNSYFEVMP  254 (299)
Q Consensus       234 a~~~-~~--~~~~~f~~~Y~~~~~  254 (299)
                      +.++ +.  ...++|+++|.+..+
T Consensus       224 a~~~~~~~~~~~~~~~~~Y~~~~g  247 (276)
T cd05152         224 VLHYRIFGEAGLERLIDAYEAAGG  247 (276)
T ss_pred             HHHHHhcChHHHHHHHHHHHHcCC
Confidence            9763 22  234789999998664

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=99.89  E-value=1.7e-21  Score=174.98  Aligned_cols=221  Identities=19%  Similarity=0.253  Sum_probs=140.9

Q ss_pred             cccCCcchHHHHHHhc-CC--CcceeeeeeeCCccccceEEEEeCCc--cEEEEecCCC----------CcchHHHHHHH
Q 022304            3 VAALSDDPIREWILSE-GK--ATHITKICPVGGGCINLASRYGTDAG--SFFVKTNRSI----------GPSMFEGEALG   67 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~-~~--~~~~~~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~----------~~~~~~~E~~~   67 (299)
                      -..|+.+.+.++|.+. ++  .....+++++++|..|.||+|+..+|  ++|||...+.          ...+...|++.
T Consensus         4 y~~l~~~~v~~yl~~~~~~~~~~~~~~~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~   83 (401)
T PRK09550          4 YETLTEEDAVEYAALKLGLFDPKALLTAREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEA   83 (401)
T ss_pred             CeeCCHhHHHHHHHHhcCCCCCcccceeeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHH
Confidence            3468999999999544 33  23456789999999999999999877  8999997631          22456789999


Q ss_pred             HHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC-----------CCcHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 022304           68 LGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS-----------RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNT  136 (299)
Q Consensus        68 l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~-----------~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~  136 (299)
                      |+.+++..+..||+|+.++.   ...+++|||+++...           +..++++|+.||++|-..+.   +.......
T Consensus        84 L~~l~~~~p~~VPkV~~~D~---~~~~lVME~L~~~~~lr~~Ll~g~~~p~~a~~iG~~LA~~~f~tsd---~~~~~~~~  157 (401)
T PRK09550         84 LKIQAKYVPDLVPKVYHYDE---ELAVTVMEDLSDHKILRKGLIDGKKYPKLAEHIGEFLARTLFYTSD---FGLSSEEK  157 (401)
T ss_pred             HHHHHhhCCCCCCeEEEECC---CCCEEEEecCCCccHHHHHHhcCCccHHHHHHHHHHHHHHHhccch---hhcChhhh
Confidence            99998876788999999984   578999999998541           23478999999999965531   11110000


Q ss_pred             cccccc-CCC----------CCCCHHHHHHHhhhHHHHHHHHhh-cCChHHHHHHHHHHHHHhccccCCCCCcceeccCC
Q 022304          137 IGSTPQ-INK----------WTSNWIEFYAEHRLGYQLKLALDQ-YGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDL  204 (299)
Q Consensus       137 ~g~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl  204 (299)
                      ...... .|.          .......... +++.+.+....+. ..+..+...    +++++..+.  ..+.+|+||||
T Consensus       158 ~~~~~~f~N~~l~~ite~lvft~P~~~~~~-n~~~p~l~~~~~~l~~d~~L~~~----~~~L~~~~~--~~~~~l~HgDl  230 (401)
T PRK09550        158 KALVAKFTNPELCKITEDLVFTDPYFDHET-NNFEPELEPEVEELRADKELKLE----VAKLKHKFL--TKAEALLHGDL  230 (401)
T ss_pred             hhHHhhcCCHHHhhhhHhhccccchhhhhh-ccCChhhHHHHHHHHhCHHHHHH----HHHHHHHHh--cCCCceeeccC
Confidence            000000 000          0000000000 1122222221111 112222222    333443333  24678999999


Q ss_pred             CCCCeeecCCCCeEEEccc-cccCCchhhhhhhh
Q 022304          205 WSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       205 ~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      |++|||+.+++ +.||||+ |.+|+|.+|++.+.
T Consensus       231 ~~gni~~~~~~-~~viD~E~a~~G~~~~Dlg~~l  263 (401)
T PRK09550        231 HTGSIFVTEEE-TKVIDPEFAFYGPIGFDIGTFI  263 (401)
T ss_pred             CcccEEeeCCC-cEEEeccccccCChHHHHHHHH
Confidence            99999997664 8999996 78999999999763

>PRK06149 hypothetical protein; Provisional

Probab=99.88  E-value=4.8e-21  Score=191.41  Aligned_cols=240  Identities=15%  Similarity=0.143  Sum_probs=159.7

Q ss_pred             cCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhc-CCCCCccc
Q 022304            5 ALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYET-RTIRAPRP   82 (299)
Q Consensus         5 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~-~~~~vP~~   82 (299)
                      .++.+++..+|.++ +|.. .++.+++ |..|.+|+|++++++||||++++. ....+..|..++++|+++ .+++||+|
T Consensus        16 ~ls~~~~~~ll~~~-ygl~-~~~~~L~-s~~d~nf~v~t~~~~yVLKi~~~~~~~~~l~~e~~~l~hL~~~~~glpvp~p   92 (972)
T PRK06149         16 DVSEAQAERILAEH-YGLS-GTLTELG-SQQDRNFRVDSDGGRFVLKICHAAYAAVELEAQHAALRHLAEREPALRVPVV   92 (972)
T ss_pred             CCCHHHHHHHHHHh-cCCc-eEEEecC-CcCcceEEEEecCCcEEEEeCCccCChHHHHHHHHHHHHHHhhCCCCCCcee
Confidence            58899999999766 3322 2456775 566899999998899999999853 345678899999999876 36999999


Q ss_pred             eeecccC-------C--CceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCC
Q 022304           83 FKVGALP-------T--GGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKW  146 (299)
Q Consensus        83 ~~~~~~~-------~--~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~  146 (299)
                      +...+..       +  +..+.+++|++|....       ..++++|+.+|+||.....   |.  ++...    ....|
T Consensus        93 i~t~~G~~~~~~~~~g~~~~vrL~~~l~G~~~~~~~~~~~~~~~~lG~~lArlh~al~~---f~--hp~~~----r~~~W  163 (972)
T PRK06149         93 IPALDGEELLTLDVRGQGLRVRLLDYLPGQPLTRLGHLAPASVAGLGALCARVARALAD---FD--HPGLD----RTLQW  163 (972)
T ss_pred             eECCCCCeEEEEecCCceEEEEEEEecCCccccccCCCCHHHHHHHHHHHHHHHHHHcC---CC--CCCCC----Ccccc
Confidence            9765432       1  3457899999997652       2478999999999999963   32  22110    11223


Q ss_pred             CCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHH----HHHhccccCCCCCcceeccCCCCCCeeecCCC-----Ce
Q 022304          147 TSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLM----KNLAPLFEGVNVEPCLLHGDLWSGNISSDKNG-----EP  217 (299)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~-----~~  217 (299)
                      ...        +.......+.....++...+.+.+.+    +++...+.  ..+.++||||++.+||+|+++.     ..
T Consensus       164 dl~--------~~~~~~~~ll~~i~d~~~r~~l~~~~~~~~~~l~~~~~--~L~~g~IH~Dl~~~Nilv~~~~~~~~~v~  233 (972)
T PRK06149        164 DLR--------HAGPVVAHLLSHITDPAQRARIAEATRDAARRLQPLAP--ALPLQAVHLDITDDNVVGSRDADGRWQPD  233 (972)
T ss_pred             chh--------hhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhh--hCcccccCCCCCcccEEEcCCCCCCccee
Confidence            211        00111111111112222233333333    33443333  3578999999999999998652     24


Q ss_pred             EEEcc-ccccCCchhhhhhhh---hc--CCC----hhhHHHhhhhCCCCCCHHHHHHHH
Q 022304          218 VILDP-ACYYGHNEAEFGMSW---CA--GFG----GSFYNSYFEVMPKQPGFEKRRDLY  266 (299)
Q Consensus       218 ~iID~-~~~~g~~~~Dla~~~---~~--~~~----~~f~~~Y~~~~~l~~~~~~r~~~~  266 (299)
                      +|||| ++++++..+|||++.   +.  ...    .+|++||.+++|+++.+.+.+..+
T Consensus       234 giIDFgD~~~~~~i~DLAial~~~~~~~~~dp~~~~~~l~GY~svrpLt~~E~~~L~~l  292 (972)
T PRK06149        234 GVIDFGDLVRTWRVADLAVTCASLLHHAGGDPFSILPAVRAYHAVRPLSEAELKALWPL  292 (972)
T ss_pred             EEEEcccchhhhHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            89998 689999999999752   21  111    369999999999998665544443

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=99.88  E-value=3.1e-21  Score=167.60  Aligned_cols=233  Identities=19%  Similarity=0.259  Sum_probs=148.0

Q ss_pred             cCCcchHHHHHHhcCCC-cceeeeeeeCCccccceEEEEeCCccEEEEecCC----CCcchHHHHHHHHHHHHhcCCCCC
Q 022304            5 ALSDDPIREWILSEGKA-THITKICPVGGGCINLASRYGTDAGSFFVKTNRS----IGPSMFEGEALGLGAMYETRTIRA   79 (299)
Q Consensus         5 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~v   79 (299)
                      +++...+..+|..+.++ .....++...+|++|.+|++...+.+|+||.++.    .......+|+.+++.|... .+||
T Consensus         7 ~~~~~~l~~~l~~~ip~~~~~~~v~~~~~G~sn~t~~~~~~~~~~vlR~P~~~~~~~~~~~~~re~~~i~~l~~~-~vP~   85 (321)
T COG3173           7 ALDIAALAAYLRSQIPGYAGLLIVEEISGGWSNDTFRLGDTGQKYVLRKPPRGDPVESAHDEKREYRVIAALLDV-DVPV   85 (321)
T ss_pred             cCCHHHHHHHHHhhCcCcCCCceeeeccCCcccceEEEecCCceEEEecCCccccchhhhHHHhHHHHHHHhcCC-CCCC
Confidence            34567788888877332 2444566678899999999988877999995432    1234467788888888765 6888


Q ss_pred             ccceeecccCC-CceEEEEecccCCCCC--------C--cHH-HHHHHHHHHHhcCCCC-CCCCCCCCCcccccccCCCC
Q 022304           80 PRPFKVGALPT-GGSYIIMEFIEFGSSR--------G--NQS-VFGKKLAEMHKAGKSS-KGFGFDVDNTIGSTPQINKW  146 (299)
Q Consensus        80 P~~~~~~~~~~-~~~~~v~e~l~G~~~~--------~--~~~-~lg~~La~lH~~~~~~-~~~~~~~~~~~g~~~~~~~~  146 (299)
                      |+++..+.... |.+|.+|+|++|+...        .  ... ++++.|+.||+++... +.+|.+.. +.+  .+.   
T Consensus        86 p~~~~~~~~~~~g~pf~v~~~veGe~~~~~~~~~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~-~~~--rql---  159 (321)
T COG3173          86 PRAFGLCGEGYLGTPFYVMEWVEGEVVWSALPPESLGRQFALDALADFLAELHSIDAAGLPDPGKPNA-YRG--RQL---  159 (321)
T ss_pred             cccccccccCCCCCceEEEEEecceeccCcCCcccchHHHHHHHHHHHHHHHhCCCCcCCCCCCccCc-ccc--chh---
Confidence            88887665433 7899999999996421        2  234 8999999999999521 11111100 000  011   


Q ss_pred             CCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cc
Q 022304          147 TSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CY  225 (299)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~  225 (299)
                       ..|...+.     ...   .+........+.+...++..... .  +.+++++|||+|++|||+++++.++||||+ +.
T Consensus       160 -~~~~~~~~-----~~~---~~~~~~~p~~~~~~~Wl~~~~p~-~--~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~  227 (321)
T COG3173         160 -ARWDDEYR-----RAK---KELGGRIPLADRLIKWLEANRPP-W--AGPPVLVHGDYRPGNLIIDPGRPTGVLDWELAT  227 (321)
T ss_pred             -hHHHHHHH-----HHH---HhccCCCchHHHHHHHHHhcCCC-c--CCCceeeeCCcccCCEEEeCCCeeEEEeccccc
Confidence             22222211     000   11111111122222222222211 2  468899999999999999988878999996 67


Q ss_pred             cCCchhhhhhh-hh--c------CCC------hhhHHHhhhhCCCC
Q 022304          226 YGHNEAEFGMS-WC--A------GFG------GSFYNSYFEVMPKQ  256 (299)
Q Consensus       226 ~g~~~~Dla~~-~~--~------~~~------~~f~~~Y~~~~~l~  256 (299)
                      +|||..||+.. +.  .      .++      ..+++.|.+..+++
T Consensus       228 lGDP~~Dl~~~~W~~~~~~~~~~~~~~~~~~~~~l~a~y~~~~G~~  273 (321)
T COG3173         228 LGDPLEDLAIICWTIFDEPAARAIFRLGVPALDELLATYARARGLA  273 (321)
T ss_pred             cCCcHHHHHHHHhccccchhhhhhcccCcccHHHHHHHHHHhcCcc
Confidence            99999999976 42  1      122      36788999888776

>PLN02756 S-methyl-5-thioribose kinase

Probab=99.88  E-value=3.3e-21  Score=172.27  Aligned_cols=213  Identities=19%  Similarity=0.190  Sum_probs=138.1

Q ss_pred             ccCCcchHHHHHHhc------CCC-cceeeeeeeCCccccceEEEEeCCccEEEEecCCC----------CcchHHHHHH
Q 022304            4 AALSDDPIREWILSE------GKA-THITKICPVGGGCINLASRYGTDAGSFFVKTNRSI----------GPSMFEGEAL   66 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~------~~~-~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~----------~~~~~~~E~~   66 (299)
                      ..|+.+.+..||.+.      ..+ ..+.+++++++|.+|.+|+|+++++++|||.+++.          ...+-..|++
T Consensus         7 ~~l~~~~l~~yl~~~~~~~~~l~g~~~~l~~~eiggGn~N~VyrV~~~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~   86 (418)
T PLN02756          7 RPLDEKSLVEYIKATPALSSKIGNDLDDLKIKEVGDGNLNFVYIVVSSSGSFVIKQALPYIRCIGESWPMTKERAYFEAT   86 (418)
T ss_pred             ccCCHHHHHHHHHHccchhhhcCCCCCCceEEEcCCCceeeEEEEEcCCccEEEEeCCccccCCCccccCCccHHHHHHH
Confidence            468899999999886      222 24568999999999999999988779999999731          2234456788


Q ss_pred             HHHHHHhcCCCCCccceeecccCCCceEEEEecccCC-C-C----------CCcHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 022304           67 GLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG-S-S----------RGNQSVFGKKLAEMHKAGKSSKGFGFDVD  134 (299)
Q Consensus        67 ~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~-~-~----------~~~~~~lg~~La~lH~~~~~~~~~~~~~~  134 (299)
                      .|+.+.+..+.+||+|+.++.   +..+++|||+++. . +          +...+++|..+++..-..+.   +.....
T Consensus        87 aL~~~~~~~p~~VPkVy~~de---d~~vlvME~L~~~~~ilr~~Ll~G~~~p~~a~~ig~~la~tLf~tSd---~~~~~~  160 (418)
T PLN02756         87 ALREHGRLCPDHVPEVYHFDR---TMALIGMRYLEPPHIILRKGLIAGIEYPLLAEHMSDYMAKTLFFTSL---LYHDTT  160 (418)
T ss_pred             HHHHhhhcCCCCCCeEEEECC---CCCEEEEeecCCcceehhhhhccCCCCHHHHHHHHHHHHHHHhhcch---hccChh
Confidence            888787766789999999985   5789999999883 2 2          13468899999987322221   111100


Q ss_pred             C-------cc-------------cccccCCCCCCCHHHHHHHhhhHHHHHHHHhh-cCChHHHHHHHHHHHHHhccccCC
Q 022304          135 N-------TI-------------GSTPQINKWTSNWIEFYAEHRLGYQLKLALDQ-YGDSTIYQRGHRLMKNLAPLFEGV  193 (299)
Q Consensus       135 ~-------~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~  193 (299)
                      .       +.             -..|..+.....|        ..+.+....+. ..++.+...+.+    ++..+.  
T Consensus       161 ~kk~~~~~f~~N~elc~itEdlvFt~Py~~~~~n~~--------~~p~l~~~~~~l~~d~~L~~~v~~----Lk~~f~--  226 (418)
T PLN02756        161 EHKRAVAEFCGNVELCRLTEQVVFSDPYKVSQYNRW--------TSPYLDRDAEAVREDNILKLEIAE----LKSMFC--  226 (418)
T ss_pred             hhhHHHHHhcCCHHHHHHHHhheeccccccchhcCC--------CCcchHHHHHHHhcCHHHHHHHHH----HHHHHH--
Confidence            0       00             0001100000001        11222211111 123333333333    343333  


Q ss_pred             CCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh
Q 022304          194 NVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       194 ~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      ...++|+|||+|+|||++++++ +.+||++ +.|||+++|++++.
T Consensus       227 ~~~~~L~HGDl~~g~i~~~~~~-~~~id~ef~~~g~~~~d~g~~~  270 (418)
T PLN02756        227 ERAQALVHGDLHTGSVMVTPDS-TQVIDPEFAFYGPMGFDIGAFL  270 (418)
T ss_pred             hcccceeecCCCCCcEEEcCCC-ceEecchhhccCchHHhHHHHH
Confidence            2578999999999999998776 8999987 78999999999853

>PRK06148 hypothetical protein; Provisional

Probab=99.88  E-value=5.5e-21  Score=191.15  Aligned_cols=245  Identities=13%  Similarity=0.100  Sum_probs=163.6

Q ss_pred             ccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC-CcchHHHHHHHHHHHHhc-CCCCCc
Q 022304            4 AALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI-GPSMFEGEALGLGAMYET-RTIRAP   80 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~-~~~~~~~E~~~l~~L~~~-~~~~vP   80 (299)
                      ..++.+++.+.+.++ +|.. .++++++ |..|.+|+|++++| +||+|+.++. ....++.|.+++.+|+++ .++|||
T Consensus         9 p~~s~~~~~~~~~~~-ygl~-~~~~~L~-s~~d~nf~v~~~~g~~yVLKi~~~~~~~~~~~~q~~~L~hL~~~~~glpvP   85 (1013)
T PRK06148          9 PEFTTKDAEALLAQH-FGIS-ATATPLD-GERDLNFRLTTDDGADYILKIVNPSEPRVESDFQTAALDHLAAVAPDLPVP   85 (1013)
T ss_pred             CCCCHHHHHHHHHHH-cCCc-eEEeecC-CcCCceEEEEeCCCCeEEEEEcCCccchhHHHHHHHHHHHHHhhCCCCCcC
Confidence            357889999999888 4433 3467885 56799999999877 8999999853 345567788899999875 468999


Q ss_pred             cceeecccC--------CC--ceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccC
Q 022304           81 RPFKVGALP--------TG--GSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQI  143 (299)
Q Consensus        81 ~~~~~~~~~--------~~--~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~  143 (299)
                      +|+...+..        +|  ..+.+++|++|.++.       ...+++|+.|++||.....   |..+..     . ..
T Consensus        86 ~~i~t~~G~~~~~v~~~~G~~~~vrLl~~l~G~~l~~~~~~t~~~~~~lG~~larlh~al~~---F~~p~~-----~-r~  156 (1013)
T PRK06148         86 RLIPSLSGASLASAQDPDGEPRLLRLLSWLPGTPLAEAAPRTEALLDNLGRALGRLDRALQG---FMHPGA-----L-RD  156 (1013)
T ss_pred             eeeecCCCCeEEEeecCCCceEEEEEEeccCCCcHHhccCCCHHHHHHHHHHHHHHHHHHhc---CCCCCc-----c-cc
Confidence            999764331        23  457899999998752       2478999999999999753   432211     0 11


Q ss_pred             CCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhc----cccCCCCCcceeccCCCCCCeeecCCC---C
Q 022304          144 NKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP----LFEGVNVEPCLLHGDLWSGNISSDKNG---E  216 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~liHgDl~~~Nvl~~~~~---~  216 (299)
                      ..|......+     +...+.    ...++..++.++++++.+.+    .+.  ..|.++||||++++|||+++++   .
T Consensus       157 ~~Wdl~~~~~-----l~~~l~----~i~d~~~r~~l~~~~~~~~~~v~p~l~--~Lp~~vIHgDln~~NiLv~~~~~~~i  225 (1013)
T PRK06148        157 LDWDLRHAGR-----ARDRLH----FIDDPEDRALVERFLARFERNVAPRLA--ALPAQVIHNDANDYNILVDADDGERI  225 (1013)
T ss_pred             cccccccchh-----hhhhhh----hcCCHHHHHHHHHHHHHHHHHHHHHHh--cCCcceECCCCCcccEEEcCCCCcce
Confidence            2342211111     111111    11233334444444444332    233  3578899999999999998774   4


Q ss_pred             eEEEcc-ccccCCchhhhhhhh--h--cCC-C----hhhHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 022304          217 PVILDP-ACYYGHNEAEFGMSW--C--AGF-G----GSFYNSYFEVMPKQPGFEKRRDLYMLYHY  271 (299)
Q Consensus       217 ~~iID~-~~~~g~~~~Dla~~~--~--~~~-~----~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~  271 (299)
                      .+|||| +++++++.+|+|+..  +  ... +    .+|++||.+++|+++.+.+.+..+...+.
T Consensus       226 sGiIDFgDa~~~~~v~DLAialay~~~~~~~p~~~~~a~laGY~sv~pLt~~E~~~L~~li~~R~  290 (1013)
T PRK06148        226 SGLIDFGDAVHAPRICEVAIAAAYAILDHPDPIGAAAALVAGYHAVYPLQAQELDLLFDLIRMRL  290 (1013)
T ss_pred             EEEEECcccccccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence            689999 689999999999753  1  111 1    37999999999999866555554433333

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=99.88  E-value=2.3e-21  Score=164.62  Aligned_cols=195  Identities=16%  Similarity=0.187  Sum_probs=122.0

Q ss_pred             eeeeeCCccccceEEEEeCC---ccEEEEecCCCCc--chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTDA---GSFFVKTNRSIGP--SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~---g~~vlK~~~~~~~--~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +++++.+|.+|.+|+|++.+   ++||+|+++....  ...+.|..+++.|+.. ++ +|+++....     .+++|||+
T Consensus         2 ~i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~-gl-~P~v~~~~~-----~~~l~e~i   74 (235)
T cd05157           2 TFKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKH-GL-APKLYATFQ-----NGLIYEFI   74 (235)
T ss_pred             eEEEcCCcccceEEEEEcCCCCCCeEEEEEccCCccceecHHHHHHHHHHHHhC-CC-CCeEEEEeC-----CcEEEEee
Confidence            67899999999999999873   5899999875432  2346899999999876 45 799986542     25899999


Q ss_pred             cCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHh--hcC
Q 022304          101 EFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALD--QYG  171 (299)
Q Consensus       101 ~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  171 (299)
                      +|.++.       ....++|+.|+++|+...+.   .+..+.    .+....| +....+...  +.........  ...
T Consensus        75 ~G~~l~~~~~~~~~~~~~la~~l~~lH~~~~~~---~~~~~~----~~~~~~~-~~i~~~~~~--~~~~~~~~~~~~~~~  144 (235)
T cd05157          75 PGRTLEPEDLRNPKIYRLIARELAKLHSIKPPE---AISSPG----TPKPILW-PTIRKWINL--VPTEFKKPEKFQKKT  144 (235)
T ss_pred             CCCcCCHHHccChHHHHHHHHHHHHHhcccccc---cccccC----CCCCcHH-HHHHHHHHH--hHHhhccccchhhhh
Confidence            998753       24688999999999988632   111000    0000001 011111110  0000000000  000


Q ss_pred             ChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecC-CCCeEEEccc-cccCCchhhhhhhh
Q 022304          172 DSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDK-NGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~-~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      .......+.+.+..+...+.....+.++||||++++|||+++ ++.+++|||+ +.+|+|.+|||.+.
T Consensus       145 ~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~~~Dla~~~  212 (235)
T cd05157         145 KAISFEQLRDEISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYRAFDIANHF  212 (235)
T ss_pred             ccccHHHHHHHHHHHHHHhcccCCCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCchheeHHHHH
Confidence            001122333333444433333235789999999999999987 4668999996 88999999999763

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.88  E-value=5.2e-21  Score=160.61  Aligned_cols=192  Identities=19%  Similarity=0.234  Sum_probs=128.2

Q ss_pred             eeeeeCCccccceEEEEeCC-ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccC--CCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDA-GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP--TGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~--~~~~~~v~e   98 (299)
                      .++++++|..|.+|++++.+ .+||+|++...    ....++.|.++++.|+.. ++++|+++......  .+..+++|+
T Consensus         2 ~~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~-~~~vp~~~~~~~~~~~~~~~~~v~e   80 (223)
T cd05154           2 EVRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGT-GVPVPKVLALCEDPSVLGTPFYVME   80 (223)
T ss_pred             cceecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCC-CCCCCCEEEECCCCCccCCceEEEE
Confidence            46789999999999999987 59999998753    245688999999999886 78999999876542  246799999


Q ss_pred             cccCCCCCC--------------cHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHH
Q 022304           99 FIEFGSSRG--------------NQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLK  164 (299)
Q Consensus        99 ~l~G~~~~~--------------~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (299)
                      |++|.++..              .+.++++.|++||+.+.+.  .+....   +   .   . ..+..    ..+....+
T Consensus        81 ~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~--~~~~~~---~---~---~-~~~~~----~~~~~~~~  144 (223)
T cd05154          81 RVDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAA--VGLGDL---G---R---P-GGYLE----RQVARWRR  144 (223)
T ss_pred             EeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhh--cCCccc---C---C---C-CchHH----HHHHHHHH
Confidence            999986521              1478999999999988632  221100   0   0   0 01100    11111111


Q ss_pred             HHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecC--CCCeEEEccc-cccCCchhhhhhhh
Q 022304          165 LALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDK--NGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~--~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      .+.......  ...+.++.+.+...... ..+.++||||+|++|||+++  ++.++||||+ +.+|+|++|++.++
T Consensus       145 ~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~~~~Dla~~~  217 (223)
T cd05154         145 QYDASRTDE--PPAMERLLRWLEAHLPA-DSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDPLADLGWLL  217 (223)
T ss_pred             HHHhhcccc--cHHHHHHHHHHHhhCCC-CCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccCChHHHHHHHH
Confidence            111110000  11223333333333332 25789999999999999987  4557899996 68999999999763

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=99.87  E-value=3.9e-21  Score=169.75  Aligned_cols=236  Identities=12%  Similarity=0.081  Sum_probs=144.1

Q ss_pred             HHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccce-eecccC--
Q 022304           13 EWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPF-KVGALP--   89 (299)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~-~~~~~~--   89 (299)
                      .+|.++  |..+.+++++    .|.||+|.|++|.|+||..... ...+.....++++|+++ |+++|.++ .+.+..  
T Consensus         3 ~vl~~Y--~l~v~~i~~~----~~~v~~v~T~~G~~~Lk~~~~~-~~~l~~~~~~~~~L~~~-G~~~~~~~~~t~~G~~~   74 (309)
T TIGR02904         3 AVLEHY--GLQPEEMEQV----TGKLFKVYTDQGVFALKKLYAD-RNTIESFVSQIQVLSEK-GFSRIVPVYPTKDGSYY   74 (309)
T ss_pred             hhHhhc--CCCceeeecc----cCcEEEEEeCCCCEEEEEeccc-hHhHHHHHHHHHHHHHc-CCCcCCceeecCCCCee
Confidence            445444  5567777554    4578999999999999998742 34466788889999887 68766666 443322  


Q ss_pred             ---CCceEEEEecccCCCC---CCcHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccc-CCCCCCCHHHHHHHhhhHHH
Q 022304           90 ---TGGSYIIMEFIEFGSS---RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQ-INKWTSNWIEFYAEHRLGYQ  162 (299)
Q Consensus        90 ---~~~~~~v~e~l~G~~~---~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~  162 (299)
                         .+..+++++|++|...   ...+.++|+.||+||.++.......  .    ...+. ...+...|.....  .+...
T Consensus        75 ~~~~~~~~~L~~wi~G~~~~~~~~~~~~~~~~LA~lH~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~--~l~~~  146 (309)
T TIGR02904        75 LFHGHFLYYLMPWLDIERNEERNYQHESMFQELALLHRKTVKTERVT--E----EELKKHYERTLSRWENIPE--GLEEF  146 (309)
T ss_pred             eEECCEEEEEeCCcccccccCCHHHHHHHHHHHHHHHHhhhCCCccc--H----hHHHhHHHHHHHHHHHHHH--HHHHH
Confidence               4678999999999533   1357999999999999997411110  0    00000 0111112221110  01111


Q ss_pred             HHHHHh-hcCC----------hHHHHHHHHHHHHHhccc----cCCCCCcceeccCCCCCCeeecCCCCeEEEccc-ccc
Q 022304          163 LKLALD-QYGD----------STIYQRGHRLMKNLAPLF----EGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYY  226 (299)
Q Consensus       163 ~~~~~~-~~~~----------~~~~~~~~~~~~~l~~~l----~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~  226 (299)
                      ...... ...+          ....+.++.+.+.+....    .....+.++||||++++|+|+++++..+||||+ +++
T Consensus       147 ~~~~~~~~~~~~fe~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       147 IVEAEAKWYMSPFELQACTYYHEVMQAAEFAQNKLEDWHEATKEKESWRTVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            111110 0001          011122333333222211    111357799999999999999888778999995 789


Q ss_pred             CCchhhhhhhhh-----cCCC----hhhHHHhhhhCCCCCCHHHHHH
Q 022304          227 GHNEAEFGMSWC-----AGFG----GSFYNSYFEVMPKQPGFEKRRD  264 (299)
Q Consensus       227 g~~~~Dla~~~~-----~~~~----~~f~~~Y~~~~~l~~~~~~r~~  264 (299)
                      |+|++||+.++.     ..+.    ..++++|++++|++++..+.+.
T Consensus       227 d~~~~DLa~~~~~~~~~~~~~~~~~~~~l~~Y~~~~pL~~~E~~~l~  273 (309)
T TIGR02904       227 ASPLTDLAAFFRRSFGTYPQPIDEMFEWFYTYEKTLPLTDEEIHLLT  273 (309)
T ss_pred             CCcHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999996531     1232    5899999999999975433333

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=99.86  E-value=2.3e-20  Score=164.41  Aligned_cols=189  Identities=14%  Similarity=0.126  Sum_probs=119.8

Q ss_pred             eeeeeCCccccceEEEEeCC--------ccEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           26 KICPVGGGCINLASRYGTDA--------GSFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--------g~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      +++++.+|.+|.+|+|++.+        ++||+|++....  ......|.++++.|++. + .+|+++.....     .+
T Consensus         2 ~i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~~-g-~~P~~~~~~~~-----~~   74 (302)
T cd05156           2 EVSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSER-N-LGPKLYGIFPN-----GR   74 (302)
T ss_pred             eEEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHhC-C-CCCceEEEeCC-----Cc
Confidence            57899999999999999865        489999987642  24467899999999986 3 58999988642     46


Q ss_pred             EEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHh
Q 022304           96 IMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALD  168 (299)
Q Consensus        96 v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (299)
                      +++|++|..+.       ....++|+.|++||+...+.  .+...  .  ..+      ..|.. +.  ...........
T Consensus        75 v~e~i~G~~l~~~~~~~~~~~~~ia~~L~~lH~~~~~~--~~~~~--~--~~~------~~~~~-~~--~~~~~~~~~~~  139 (302)
T cd05156          75 IEEFIPSRTLTTEELRDPDISAEIARRMAKLHSIVVPL--SPEER--D--LTP------AIWKL-LK--QWLDLAETVIE  139 (302)
T ss_pred             hhheeCCCcCCHhHcCCcHHHHHHHHHHHHhhCCCCCC--CCCcC--c--ccc------hHHHH-HH--HHHHHhhhhhh
Confidence            89999998753       24689999999999998631  01000  0  000      11110 00  00000000000


Q ss_pred             -------hcCCh---HHHHHHHHHHHHHhcccc-CCCCCcceeccCCCCCCeeecCC----CCeEEEccc-cccCCchhh
Q 022304          169 -------QYGDS---TIYQRGHRLMKNLAPLFE-GVNVEPCLLHGDLWSGNISSDKN----GEPVILDPA-CYYGHNEAE  232 (299)
Q Consensus       169 -------~~~~~---~~~~~~~~~~~~l~~~l~-~~~~~~~liHgDl~~~Nvl~~~~----~~~~iID~~-~~~g~~~~D  232 (299)
                             .....   ...+.+.++.+.+..... ....+.++||||++++|||++++    +.+.+|||+ +.+|+|++|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p~~D  219 (302)
T cd05156         140 IVDSDSEKLLEVELSLFLEDEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYRGFD  219 (302)
T ss_pred             hcccchhhhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCcHHH
Confidence                   00000   011122222222222111 01367899999999999999874    668999995 889999999


Q ss_pred             hhhh
Q 022304          233 FGMS  236 (299)
Q Consensus       233 la~~  236 (299)
                      ||.+
T Consensus       220 lA~~  223 (302)
T cd05156         220 IANH  223 (302)
T ss_pred             HHHH
Confidence            9974

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.85  E-value=4.4e-20  Score=148.65  Aligned_cols=152  Identities=21%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .++++++|.+|.+|++++.+++|++|++....  ...++.|+..++.+++.  ..+|+++..+.   ...+++|||++|.
T Consensus         2 ~~~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~--~~~P~~~~~~~---~~~~lv~e~i~G~   76 (170)
T cd05151           2 HISPLKGGMTNKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEA--GIGPKLYYFDP---ETGVLITEFIEGS   76 (170)
T ss_pred             ceeecCCcccCceEEEEECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHh--CCCCceEEEeC---CCCeEEEEecCCC
Confidence            47899999999999999988899999987543  24468899999999875  34799998763   3568999999998


Q ss_pred             CCCC-------cHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHH
Q 022304          104 SSRG-------NQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIY  176 (299)
Q Consensus       104 ~~~~-------~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (299)
                      ++..       ...++++.|++||+..                                                     
T Consensus        77 ~l~~~~~~~~~~~~~l~~~l~~LH~~~-----------------------------------------------------  103 (170)
T cd05151          77 ELLTEDFSDPENLEKIAKLLKKLHSSP-----------------------------------------------------  103 (170)
T ss_pred             ccccccccCHHHHHHHHHHHHHHhCCC-----------------------------------------------------
Confidence            6521       0112222222222211                                                     


Q ss_pred             HHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh-cCCC----hhhHHHhh
Q 022304          177 QRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC-AGFG----GSFYNSYF  250 (299)
Q Consensus       177 ~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~-~~~~----~~f~~~Y~  250 (299)
                                       ..+.++||||++++||+++ ++...+|||+ +.+|+|.+|++.++. ..++    ..|++.|.
T Consensus       104 -----------------~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~~~~~Dla~~~~~~~~~~~~~~~~~~~y~  165 (170)
T cd05151         104 -----------------LPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMNDPLFDLANFFSEAKLSEDQEEELLEAYF  165 (170)
T ss_pred             -----------------CCCceeecCCCCcCcEEEE-CCeEEEEecccccCCChHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence                             1267999999999999998 4458899996 679999999997642 3333    47899998


Q ss_pred             hhC
Q 022304          251 EVM  253 (299)
Q Consensus       251 ~~~  253 (299)
                      ...
T Consensus       166 ~~~  168 (170)
T cd05151         166 GRE  168 (170)
T ss_pred             CCC
Confidence            654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK12396 5-methylribose kinase; Reviewed

Probab=99.84  E-value=6.3e-20  Score=163.16  Aligned_cols=213  Identities=15%  Similarity=0.154  Sum_probs=138.6

Q ss_pred             ccCCcchHHHHHHhc-CC--CcceeeeeeeCCccccceEEEEeC--CccEEEEecCCC---------CcchHHHHHHHHH
Q 022304            4 AALSDDPIREWILSE-GK--ATHITKICPVGGGCINLASRYGTD--AGSFFVKTNRSI---------GPSMFEGEALGLG   69 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~-~~--~~~~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---------~~~~~~~E~~~l~   69 (299)
                      ..|+.+++.+++.+. +.  .....+++++|+|..|.||||...  .+++|||.+.+.         +..+...|+++|+
T Consensus         8 ~~l~~~~v~~yl~~~l~~~~~~~~~~~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~   87 (409)
T PRK12396          8 FLMEANDVIVYVKEKLSKFEHAKGLQCKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQ   87 (409)
T ss_pred             eeCCHhHHHHHHHHhcCCCCCcccceeeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHH
Confidence            368999999999885 32  222335899999999999999864  458999988541         2355678999999


Q ss_pred             HHHhcCCCCCccceeecccCCCceEEEEecccCCC-----------CCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 022304           70 AMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS-----------SRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIG  138 (299)
Q Consensus        70 ~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~-----------~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g  138 (299)
                      .+++..+-.||++|.++.   ....++||+++...           .+..++++|..||+.|-..+.   +.+.......
T Consensus        88 ~~~~~~P~~VP~vy~~D~---e~~~~vMEdL~~~~ilR~~Li~G~~~p~~A~~ig~fla~tlf~tSd---~~l~~~~kk~  161 (409)
T PRK12396         88 LEEELAPGLVPKVYLFDS---VMNCCVMEDLSDHTILRTALINHEIFPRLADDLTTFLVNTLLLTSD---VVMNHKEKKE  161 (409)
T ss_pred             HHHhhCCCcCCeEEEECc---HHhhHHHHhCcccHHHHHHHHcCCcChhHHHHHHHHHHHHHhhcch---hccChHHHHH
Confidence            998876667999999984   58899999997632           124578999999999986542   2211110000


Q ss_pred             -------------------ccccCCCC-CCCHHHHHHHhhhHHHHHHHHhh-cCChHHHHHHHHHHHHHhccccCCCCCc
Q 022304          139 -------------------STPQINKW-TSNWIEFYAEHRLGYQLKLALDQ-YGDSTIYQRGHRLMKNLAPLFEGVNVEP  197 (299)
Q Consensus       139 -------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~  197 (299)
                                         ..|..+.. ..++        ..+.+....+. ..+..+...+.    +++..+.  ....
T Consensus       162 ~v~~f~N~eLc~itedlvft~Py~~~~~~n~~--------~~~~~~~~~~~l~~D~~Lk~ev~----~Lk~~F~--~~~~  227 (409)
T PRK12396        162 LVKNYINPELCEITEDLVYAEPFTNHNKRNEL--------FPLNEGWIREHIYSDKELRLEVA----KLKFSFM--TNAQ  227 (409)
T ss_pred             hhHhcCCHHHHHHhcccccccCcccchhccCC--------CChhhHHHHHHHhcCHHHHHHHH----HHHHHHH--hcch
Confidence                               01110000 0000        01111111111 12333333333    3343333  2467


Q ss_pred             ceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh
Q 022304          198 CLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       198 ~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      +|||||||+||||+++++ +.|||++ ++|||+.||++.+.
T Consensus       228 aLlHGDlHtGSI~v~~~~-~kvIDpEFAfyGP~gFDiG~~l  267 (409)
T PRK12396        228 ALIHGDLHTGSVFVKNDS-TKVIDPEFAFYGPMGYDIGNVM  267 (409)
T ss_pred             hhccCcCCCCCEEecCCc-eEEEcccccccCCcHHHHHHHH
Confidence            999999999999998765 8999986 68999999999763

>PLN02236 choline kinase

Probab=99.81  E-value=6e-18  Score=151.15  Aligned_cols=199  Identities=19%  Similarity=0.157  Sum_probs=128.5

Q ss_pred             cchHHHHHHhcCCC------cceeeeeeeCCccccceEEEEeCC------ccEEEEecCCCCcch--HHHHHHHHHHHHh
Q 022304            8 DDPIREWILSEGKA------THITKICPVGGGCINLASRYGTDA------GSFFVKTNRSIGPSM--FEGEALGLGAMYE   73 (299)
Q Consensus         8 ~~~i~~~l~~~~~~------~~~~~~~~~~~G~~n~~y~v~~~~------g~~vlK~~~~~~~~~--~~~E~~~l~~L~~   73 (299)
                      ...|.+++++....      .+..+++++.||.+|.+|+++..+      .+|++|+++..+...  .+.|..+++.|++
T Consensus        16 ~~~~~~~~~~~~~~w~~~~~~~~~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~~   95 (344)
T PLN02236         16 PDELKRILHSLASKWGDVVDDEALQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSR   95 (344)
T ss_pred             hHHHHHHHHHhcchhcCCCCcCcEEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeeechHHHHHHHHHHHH
Confidence            44566666665322      346789999999999999998532      379999998643221  3679999999988


Q ss_pred             cCCCCCccceeecccCCCceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCC
Q 022304           74 TRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKW  146 (299)
Q Consensus        74 ~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~  146 (299)
                      . ++ .|+++.....  |   .+.+|++|.++.       ....++++.|+++|+...+..    .       .     +
T Consensus        96 ~-gl-~P~~~~~~~~--g---~v~efi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~----~-------~-----~  152 (344)
T PLN02236         96 H-GQ-GPRLLGRFPN--G---RVEEFIHARTLSAADLRDPEISALIAAKLREFHSLDMPGP----K-------N-----V  152 (344)
T ss_pred             c-CC-CCceEEEECC--c---eEEEeeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCC----C-------C-----c
Confidence            6 44 8999977632  2   689999998763       235799999999999875310    0       0     0


Q ss_pred             CCCHHHHHHHhhhHHHHHHHHhhcCC----hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC-CCeEEEc
Q 022304          147 TSNWIEFYAEHRLGYQLKLALDQYGD----STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN-GEPVILD  221 (299)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~-~~~~iID  221 (299)
                       ..|.      ++..+++...+...+    ......+.+.++.+...+.....+.++||+|++++|||++++ +...+||
T Consensus       153 -~~~~------~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID  225 (344)
T PLN02236        153 -LLWD------RLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITIID  225 (344)
T ss_pred             -hHHH------HHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEe
Confidence             1111      111111111110000    000122333334444333322357799999999999999763 5689999


Q ss_pred             cc-cccCCchhhhhhh
Q 022304          222 PA-CYYGHNEAEFGMS  236 (299)
Q Consensus       222 ~~-~~~g~~~~Dla~~  236 (299)
                      |+ +.+|+|.+|||..
T Consensus       226 ~Eya~~~~~~~Dia~~  241 (344)
T PLN02236        226 YEYASYNPVAYDIANH  241 (344)
T ss_pred             ehhccccchHHHHHHH
Confidence            96 7899999999974

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=99.81  E-value=2.1e-18  Score=153.36  Aligned_cols=200  Identities=17%  Similarity=0.228  Sum_probs=129.8

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-----cEEEEecCCCCcc--hHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-----SFFVKTNRSIGPS--MFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-----~~vlK~~~~~~~~--~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .-++++++.||.+|.+|+|+..++     +||+|+++..+..  .-+.|..+++.|++. ++ .|+++.....  |   +
T Consensus        15 ~~i~i~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~~~IdR~~E~~il~~l~~~-gl-~P~~l~~~~~--G---~   87 (330)
T PLN02421         15 SDFSVERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTDYVIDRERELQAIKYLSAA-GF-GAKLLGVFGN--G---M   87 (330)
T ss_pred             CceEEEEeCCcccceEEEEEecCCCCCCceEEEEEecCCcCeEechHHHHHHHHHHHhc-CC-CCceeEEeCC--c---E
Confidence            467899999999999999986432     8999999864322  236799999999886 34 4888877532  2   6


Q ss_pred             EEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHh
Q 022304           96 IMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALD  168 (299)
Q Consensus        96 v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (299)
                      +.+|++|.++.       .....+++.|+++|+...+..    ..+             .-|.      ++..++..+..
T Consensus        88 i~~fi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~----~~~-------------~~~~------~i~~y~~~~~~  144 (330)
T PLN02421         88 IQSFINARTLTPSDMRKPKVAAEIAKELRRLHQVEIPGS----KEP-------------QLWN------DIFKFYEKAST  144 (330)
T ss_pred             eehhhcCCCCChHHCCCHHHHHHHHHHHHHHhCCCCCCC----CCC-------------cHHH------HHHHHHHHhhh
Confidence            99999998763       246899999999999875310    000             1111      11111111110


Q ss_pred             -hcCChHH--------HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC-CCeEEEccc-cccCCchhhhhhhh
Q 022304          169 -QYGDSTI--------YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN-GEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       169 -~~~~~~~--------~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~-~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                       ....+..        ...+.+.+..++.++.....+.++||+|++++|||++++ +.+.+|||+ +.+++|.+|||...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd~~fDIa~~f  224 (330)
T PLN02421        145 VKFEDPEKQKKYETISFEELRDEIVELKEITDSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSYRGYDIGNHF  224 (330)
T ss_pred             cccCcHHHhhhhcccCHHHHHHHHHHHHHHhccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccCCCccHHHHHHHH
Confidence             0001100        122233333344444332467899999999999999743 568999995 89999999999753


Q ss_pred             h--cC-------CC-----hhhHHHhhhh
Q 022304          238 C--AG-------FG-----GSFYNSYFEV  252 (299)
Q Consensus       238 ~--~~-------~~-----~~f~~~Y~~~  252 (299)
                      +  .+       +|     ..|++.|.+.
T Consensus       225 ~E~~~~~~~~~~~p~~~~~~~fl~~Y~~~  253 (330)
T PLN02421        225 NEYAGFDCDYSLYPSKEEQYHFFRHYLRP  253 (330)
T ss_pred             HHHcccccCcccCcCHHHHHHHHHHhCCc
Confidence            1  11       22     2689999864

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=99.79  E-value=3.8e-18  Score=150.20  Aligned_cols=195  Identities=21%  Similarity=0.224  Sum_probs=119.4

Q ss_pred             eeCCccccceEEEEeCCc--cEEEEecCCC----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           29 PVGGGCINLASRYGTDAG--SFFVKTNRSI----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g--~~vlK~~~~~----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .+|+|..|.||||...+|  ++|||.+.+.          +..+...|++.|+.+++..+-.||++|.++.   ....++
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~D~---e~~~~v   78 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHFDT---EMAVTV   78 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEEcc---ccceeh
Confidence            578999999999998764  8999988531          1355678899998888765556999999984   588899


Q ss_pred             EecccCCCC-----------CCcHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccc-CCC----------CCCCHHHHH
Q 022304           97 MEFIEFGSS-----------RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQ-INK----------WTSNWIEFY  154 (299)
Q Consensus        97 ~e~l~G~~~-----------~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~-~~~----------~~~~~~~~~  154 (299)
                      ||+++....           +..++++|+.||++|-..+.   +............. .|.          ....+....
T Consensus        79 MEdL~~~~ilR~~Li~g~~~p~~A~~iG~~La~tlf~tsd---~~~~~~~kk~l~~~f~N~eLc~itEdlvft~py~~~~  155 (370)
T TIGR01767        79 MEDLSHHKIARKGLIEGENYPHLARHIGEFLAKTLFYSSD---YALEPKVKKALVAQFTNPELCDITERLVFTDPYFDHD  155 (370)
T ss_pred             HhhCccchHHHHHHHcCCCChHHHHHHHHHHHHHHHhhcc---cccCHHHHHHHHHHhCCHHHHHHHHHhccccchhhhh
Confidence            999976431           24578999999999865531   22111000000000 000          000000000


Q ss_pred             HHhhhHHHHHHHHhhc-CChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhh
Q 022304          155 AEHRLGYQLKLALDQY-GDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAE  232 (299)
Q Consensus       155 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~D  232 (299)
                       ..++.+.++...+.. .++.    +...+.+++..+.  ....+|||||||++||++++++ +.+|||+ +.+|++.+|
T Consensus       156 -~n~~~p~l~~~~~~l~~d~~----l~~~v~~Lk~~f~--~~~~~llHGDl~~gNi~~~~~~-~~~iD~e~~~~G~~~~D  227 (370)
T TIGR01767       156 -TNDFEEELRPFVAKLRNDDS----LKIEAAKLKHSFL--ASAETLLHGDLHSGSIFVSEHE-TKVIDPEFAFYGPIGFD  227 (370)
T ss_pred             -hhcCChhHHHHHHHHhcCHH----HHHHHHHHHHhhc--cCcceeeeccCCcccEEEcCCC-CEEEcCcccccCchHhh
Confidence             001122222111110 1212    1222333443333  2467999999999999997665 7899997 789999999


Q ss_pred             hhhhh
Q 022304          233 FGMSW  237 (299)
Q Consensus       233 la~~~  237 (299)
                      ++.+.
T Consensus       228 lg~~i  232 (370)
T TIGR01767       228 IGQFI  232 (370)
T ss_pred             HHHHH
Confidence            99763

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PTZ00296 choline kinase; Provisional

Probab=99.73  E-value=8.6e-16  Score=140.79  Aligned_cols=187  Identities=10%  Similarity=0.027  Sum_probs=117.2

Q ss_pred             eeeeeeCCccccceEEEEeCC----------ccEEEEecCCCCcch--HHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           25 TKICPVGGGCINLASRYGTDA----------GSFFVKTNRSIGPSM--FEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~----------g~~vlK~~~~~~~~~--~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ++++++.||.+|.+|+|+..+          .+|++|+++..+...  ...|..+++.|+.. + -.|+++...     .
T Consensus       108 I~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~lIdR~~E~~v~~~ls~~-g-i~P~l~~~f-----~  180 (442)
T PTZ00296        108 VRVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDELYNPISEFEVYKTMSKY-R-IAPQLLNTF-----S  180 (442)
T ss_pred             EEEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccceeCHHHHHHHHHHHHHC-C-CCCceEEEe-----C
Confidence            489999999999999998652          379999998754322  35799999999886 3 468888654     2


Q ss_pred             eEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHH
Q 022304           93 SYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL  165 (299)
Q Consensus        93 ~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                      .+.+.+|++|.++.       .....+++.|+++|+.....   ..+.  ..      ..+..-|.      ++..+...
T Consensus       181 gg~I~efi~g~~l~~~dl~~~~~~~~iA~~L~~lH~~~~~~---~~~~--~f------~~~p~~f~------~i~~~~~~  243 (442)
T PTZ00296        181 GGRIEEWLYGDPLRIDDLKNPSILIGIANVLGKFHTLSRKR---HLPE--HW------DRTPCIFK------MMEKWKNQ  243 (442)
T ss_pred             CCEEEEeeCCccCCHHHcCCHHHHHHHHHHHHHHhcccccc---cCch--hc------cCCCcHHH------HHHHHHHH
Confidence            36789999998653       34689999999999986311   0000  00      00111121      11111111


Q ss_pred             HHhhc-CC------hHHHHHHHHHHHHHhc--cccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhh
Q 022304          166 ALDQY-GD------STIYQRGHRLMKNLAP--LFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGM  235 (299)
Q Consensus       166 ~~~~~-~~------~~~~~~~~~~~~~l~~--~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~  235 (299)
                      +.+.. ..      ..+.+.+..+.+.+..  .+.....+.++||+|+.++|||.++++ +.+|||+ +.+.+|++|||.
T Consensus       244 ~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~l~~~~~~~VfCHNDl~~~NiL~~~~~-l~LIDfEYAg~ndpafDIAn  322 (442)
T PTZ00296        244 LSKYKNIEKYQRDIHKYIKESEKFIKFMKVYSKSDNLANDIVFCHNDLQENNIINTNKC-LRLIDFEYSGYNFLATDIAN  322 (442)
T ss_pred             HHhhccchHhHhhHHHHHHHHHHHHHHHHhhcccccccCCeeEEeCCCCccceeecCCC-EEEEeecccccccHHHHHHH
Confidence            11100 00      0011122222221110  011223578999999999999987555 8999995 899999999997


Q ss_pred             h
Q 022304          236 S  236 (299)
Q Consensus       236 ~  236 (299)
                      .
T Consensus       323 ~  323 (442)
T PTZ00296        323 F  323 (442)
T ss_pred             H
Confidence            5

>COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=2.9e-16  Score=127.32  Aligned_cols=218  Identities=15%  Similarity=0.151  Sum_probs=145.5

Q ss_pred             eeeeeCCcccc-ceEEEEeCCc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           26 KICPVGGGCIN-LASRYGTDAG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        26 ~~~~~~~G~~n-~~y~v~~~~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .++++..|.+. .|||+..+.+ .+++|+........+..|++.++|++.. ++++|+|+..... .++.|++|+.++|.
T Consensus        22 ~w~~v~~geS~~~v~rl~a~~r~g~~~k~~~~~~~a~L~~Ea~RlrWla~~-~l~~P~V~~~~~~-~~~~wLl~salpG~   99 (266)
T COG3231          22 RWRRVTEGESGAGVFRLFADSRPGLYLKIASSGPAAELEGEAARLRWLAGQ-GLGCPRVLGLEDD-ADQAWLLMSALPGE   99 (266)
T ss_pred             ccceeeccCCCCeEEEEeccCCCceEEEEecCcchhhhhhHHHHHHHhccc-CCCCCceEeeccC-cchhHHhhhhcCCC
Confidence            45677777654 7999987655 7899998875556789999999999987 6999999988764 67999999999998


Q ss_pred             CCC---------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHH-H-HhhcCC
Q 022304          104 SSR---------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL-A-LDQYGD  172 (299)
Q Consensus       104 ~~~---------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~  172 (299)
                      +..         ..+..+++.|+.||..+...+.|+....                 ..+..  .....+. . .+...+
T Consensus       100 ~~s~~~~~~~p~r~v~~la~aLR~LH~l~~~aCPFd~rl~-----------------~rl~~--a~~r~~a~~vdesdfd  160 (266)
T COG3231         100 DASHPRYALDPKRAVPLLAEALRRLHELPVEACPFDRRLA-----------------RRLAK--ARARVRAGLVDESDFD  160 (266)
T ss_pred             cccchhhcCCHHHHHHHHHHHHHHHhcCChhhCCcchHHH-----------------HHHHH--HHHHHhccCCChhhcC
Confidence            752         2357899999999998764443432100                 00000  0000000 0 000000


Q ss_pred             hH-HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhh-hh-------cCCC
Q 022304          173 ST-IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMS-WC-------AGFG  242 (299)
Q Consensus       173 ~~-~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~-~~-------~~~~  242 (299)
                      .+ .-....++++.+...... ....++||||...-|+|+++++-.++||.. ..+||+..||+.. +.       ..+.
T Consensus       161 ~e~qgr~~~El~d~L~~~rp~-~edLVv~HGDACLPN~i~d~~rf~GfIDlGrlGVaDRh~DLala~~s~~~nl~g~~~~  239 (266)
T COG3231         161 EERQGRTAEELFDELEARRPA-VEDLVVTHGDACLPNFILDGWRFSGFIDLGRLGVADRHQDLALATWSLRFNLGGDVWD  239 (266)
T ss_pred             hhhcCCCHHHHHHHHHhcCCc-hhhceeecCcccCcceEecCCceEEeeecCcccchHHHHhHHHHHHHHHhccCcchhh
Confidence            00 011223344444333222 356799999999999999988778999985 5799999999965 21       1255


Q ss_pred             hhhHHHhhhhCCCCCCHHHHHHHHHHH
Q 022304          243 GSFYNSYFEVMPKQPGFEKRRDLYMLY  269 (299)
Q Consensus       243 ~~f~~~Y~~~~~l~~~~~~r~~~~~l~  269 (299)
                      +.|++.|+-..+  +  ..|+.+|++.
T Consensus       240 ~~fl~~Yg~~~~--d--~~rl~~yr~l  262 (266)
T COG3231         240 DPFLDAYGRGAI--D--PARLAYYRLL  262 (266)
T ss_pred             HHHHHHhCcCCC--C--HHHHHHHHHH
Confidence            789999994321  2  4788888653

>PTZ00384 choline kinase; Provisional

Probab=99.67  E-value=1.3e-14  Score=130.76  Aligned_cols=207  Identities=13%  Similarity=0.062  Sum_probs=123.1

Q ss_pred             cchHHHHHHhcCCC-----cceeeeeeeCCccccceEEEEeCCc---c-----EEEEecCCCCc--chHHHHHHHHHHHH
Q 022304            8 DDPIREWILSEGKA-----THITKICPVGGGCINLASRYGTDAG---S-----FFVKTNRSIGP--SMFEGEALGLGAMY   72 (299)
Q Consensus         8 ~~~i~~~l~~~~~~-----~~~~~~~~~~~G~~n~~y~v~~~~g---~-----~vlK~~~~~~~--~~~~~E~~~l~~L~   72 (299)
                      ...+.+++.+.-++     ....+++++.||.+|.+|+|+..++   .     +++|++.....  -.-+.|..+++.|+
T Consensus        31 ~~~~~~~~~~~~p~w~~~~~~~i~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~~l~IdR~~E~~i~~~Ls  110 (383)
T PTZ00384         31 HSNLKSLCIRHVPFWNNVNPEFIEIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQYNIAKLLG  110 (383)
T ss_pred             HHHHHHHHHHHCCccccCCcccEEEEEeCCcccceEEEEEecCCCCCccccceEEEEeccCCCceEeccHHHHHHHHHHH
Confidence            34566666665222     2346789999999999999986543   3     45566544322  11257999999998


Q ss_pred             hcCCCCCccceeecccCCCceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCC
Q 022304           73 ETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINK  145 (299)
Q Consensus        73 ~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~  145 (299)
                      .+  --.|+++....     .+++.+|++|+++.       .....+++.|+++|+....   +. + . ..+.      
T Consensus       111 ~~--glgP~l~~~f~-----~g~l~efIeGr~l~~~dl~~p~~~~~IA~~La~lH~~~~~---~~-p-~-~~~~------  171 (383)
T PTZ00384        111 DN--NFGPKIIGRFG-----DFTIQEWVEGNTMGIDSLQNLSVLTGIASSLAKFHKRVTE---LV-P-K-EWDR------  171 (383)
T ss_pred             hC--CCCCeEEEecC-----CEEEEEEeccccCChhHhcCHHHHHHHHHHHHHHhccccc---CC-C-c-cccC------
Confidence            86  35799998864     37999999998763       2367999999999997632   10 0 0 0001      


Q ss_pred             CCCCHHHH--HHHhhhHHHHHHHHhhcCC-hHHHHHHHHHHHHHhccccC---CCCCcceeccCCCCCCeeecCCCCeEE
Q 022304          146 WTSNWIEF--YAEHRLGYQLKLALDQYGD-STIYQRGHRLMKNLAPLFEG---VNVEPCLLHGDLWSGNISSDKNGEPVI  219 (299)
Q Consensus       146 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~---~~~~~~liHgDl~~~Nvl~~~~~~~~i  219 (299)
                      +...|...  +.. .+....... ....+ ..+.+.+..+...+...+..   ...+.++||.|++++|||.++++ +.+
T Consensus       172 ~p~~~~~i~~w~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~~VfCHNDL~~gNIL~~~~~-l~l  248 (383)
T PTZ00384        172 TPMFLTKISTWSQ-HVERIIKKY-NLDFDYNELVQNYELFKKILNNHLNTSNSITNSVLFCHNDLFFTNILDFNQG-IYF  248 (383)
T ss_pred             cchHHHHHHHHHH-HHHHHHHhh-ccccCHHHHHHHHHHHHHHHHHhhccccccccceeeeeccCCcccEEecCCC-EEE
Confidence            11111110  000 001000000 00011 11222233332222222211   12467999999999999986554 899


Q ss_pred             Eccc-cccCCchhhhhhh
Q 022304          220 LDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       220 ID~~-~~~g~~~~Dla~~  236 (299)
                      |||+ +.+++|++|||..
T Consensus       249 ID~EYA~~n~~~fDLAn~  266 (383)
T PTZ00384        249 IDFDFAGFNYVGWEIANF  266 (383)
T ss_pred             EEeccccCCchHhHHHHH
Confidence            9995 8999999999965

>TIGR02905 spore_yutH spore coat protein YutH

Probab=99.62  E-value=8.6e-14  Score=122.96  Aligned_cols=221  Identities=14%  Similarity=0.164  Sum_probs=139.7

Q ss_pred             hcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCC-CccceeecccC-----C
Q 022304           17 SEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIR-APRPFKVGALP-----T   90 (299)
Q Consensus        17 ~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~-vP~~~~~~~~~-----~   90 (299)
                      ++ +|..+.++++.  |   .+..|.|++|.|+||.....+...+.....++++|+++ |++ ||+++.+.++.     .
T Consensus         6 ~~-Y~l~~~~~~~~--g---~~~~~~t~~g~y~Lk~~e~~~~~~l~f~~~~~~~L~~~-G~~~v~~~i~tk~G~~~~~~~   78 (313)
T TIGR02905         6 DQ-FGLYCDERFRV--G---RYEAFRANNQAYLIVPVDGLEEEELAELMAMSDYLQQA-GDETVLELVKTKFGQSSALID   78 (313)
T ss_pred             Hh-hCcCcccceec--C---ceeeEEeCCceEEEEEecCCCHHHHHHHHHHHHHHHHc-CCCcccceeecCCCCEeEEEC
Confidence            44 57778888886  3   25667999999999998544445577888899999987 676 99999876553     5


Q ss_pred             CceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH--hhhHHHHHHHHh
Q 022304           91 GGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE--HRLGYQLKLALD  168 (299)
Q Consensus        91 ~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  168 (299)
                      |.++++++|++|.....  ..+|+.||+||..+..   |..+...       ...| ..|.+.+..  .+++........
T Consensus        79 g~~y~L~~w~~~~~~~~--~~~~~~LA~lH~as~~---f~~~~~~-------~~~~-~~~~~~~~k~~~el~~~~~~~~~  145 (313)
T TIGR02905        79 GVSYYLFKAPEFNERRG--VDLGRELATFHKRGRQ---YPRPIWK-------KSRI-GQWKELWAKRLDQLEDWWQSLLA  145 (313)
T ss_pred             CEEEEEEeCCCcccchh--HHHHHHHHHHHHhcCC---CCCCccc-------cccc-cccHHHHHHHHHHHHHHHHHHHh
Confidence            89999999987765322  3999999999999973   3221111       1112 334444432  112222111111


Q ss_pred             hc-CCh----------HHHHHHHHHHHHHhc-ccc---CCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhh
Q 022304          169 QY-GDS----------TIYQRGHRLMKNLAP-LFE---GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEF  233 (299)
Q Consensus       169 ~~-~~~----------~~~~~~~~~~~~l~~-~l~---~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dl  233 (299)
                      .. .++          ......++.++.+.. -..   ......++||||+...|++ +++ ..++|+++.+++.|..||
T Consensus       146 ~~~~s~Fd~~fl~~~d~~~~~a~~ai~~l~~s~y~~~~~~~~~~~lCH~d~~~hn~l-~~~-~~~~i~~d~~~D~~~~DL  223 (313)
T TIGR02905       146 QGPQTLFDEQFLETFPYYLGLTENAIQYAADTELDDEPGLADSGTICHERFGETTWL-ERG-GLIKPPTEWVYDHPARDL  223 (313)
T ss_pred             cCCCChHHHHHHHHhHHHHHHHHHHHHHHHHccchhhhhccccCccccCccCccccc-cCC-CeEecccccccccchhHH
Confidence            10 000          011222223332221 011   1124569999999999988 444 478888877799999999


Q ss_pred             hhhh---h-c----CCC--hhhHHHhhhhCCCCCCH
Q 022304          234 GMSW---C-A----GFG--GSFYNSYFEVMPKQPGF  259 (299)
Q Consensus       234 a~~~---~-~----~~~--~~f~~~Y~~~~~l~~~~  259 (299)
                      +.+.   + .    .++  ..++++|+++.|++++.
T Consensus       224 ~~firk~~~k~~~~~~~~~~~~l~~Y~~~~pL~~~e  259 (313)
T TIGR02905       224 AEWIRERYMGEIRQNQRAIASFLQEYEQAAPLTPFS  259 (313)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHhhhcCCCCHHH
Confidence            9652   2 1    122  47899999999998743

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YutH, are found only in the family Bacillaceae from among the endospore-forming members of the Firmicutes branch of the Bacteria.

>PRK10271 thiK thiamine kinase; Provisional

Probab=99.60  E-value=2.9e-14  Score=114.89  Aligned_cols=171  Identities=14%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             EEEecccCCCCC--CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCC
Q 022304           95 IIMEFIEFGSSR--GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGD  172 (299)
Q Consensus        95 ~v~e~l~G~~~~--~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (299)
                      ++.+|++|...+  ....+++..++++|+.+.    ++.+.               +..     .++..+.........+
T Consensus         1 llv~Wl~Ge~~~~~~~~~~La~~l~~LH~~p~----~~~~~---------------~l~-----~~i~~Yw~~l~~~~~~   56 (188)
T PRK10271          1 MAVDYLPGEVKSYLPDTNELAGLLYHLHQQPR----FGWRI---------------TLL-----PLLEQYWQQSDPARRT   56 (188)
T ss_pred             CcccccCCCcCCCccCHHHHHHHHHHHhcCCC----CCCCC---------------CHH-----HHHHHHHHHhccccCC
Confidence            467999998774  357899999999999774    33211               111     1233333333222222


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhhcC--CChhhHHHh
Q 022304          173 STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWCAG--FGGSFYNSY  249 (299)
Q Consensus       173 ~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~~~--~~~~f~~~Y  249 (299)
                      +...    +....+.......+.+.++||||+||+|+++++++ ..+|||+ +..|||.+|++.++...  -.+.|++.|
T Consensus        57 ~~wl----~~~~~~~~~~~~~~l~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp~~DLa~~~~~~~~~~~~~l~~Y  131 (188)
T PRK10271         57 PFWL----RMLKRLRKAGEPRPLRLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDIALELAAVWVENTEQHRQLVNDY  131 (188)
T ss_pred             HHHH----HHHHHHHhcccCCCCCeeeecCCCCCccEEEECCC-EEEEeCCcccCCCHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2222    23333333333224678999999999999998777 8899995 78999999999875321  124799999


Q ss_pred             hhhCCCCCC-HHHHHHHHHHHHHHH-------HHHhhC-cccHHHHHHHHHHHH
Q 022304          250 FEVMPKQPG-FEKRRDLYMLYHYLN-------HYNLFG-SGYRSSALSIIDDYL  294 (299)
Q Consensus       250 ~~~~~l~~~-~~~r~~~~~l~~~l~-------~~~~~~-~~~~~~~~~~~~~~~  294 (299)
                      ....-.+.. +..|+.-+..+....       ++...| ..|...+.++.+++-
T Consensus       132 ~~~~~~d~~~~~~~~~~W~p~~~~m~llWyev~~qq~~d~~fl~~a~~~~~~~~  185 (188)
T PRK10271        132 ATRAKIDAAQLWRQVRRWFPWVLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLL  185 (188)
T ss_pred             hCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh
Confidence            954334443 455555554433322       233333 467777777777653

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.59  E-value=3.5e-14  Score=111.13  Aligned_cols=145  Identities=26%  Similarity=0.270  Sum_probs=103.8

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCC-cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIG-PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +++++.|..+.+|+++..++.+++|...... ...+..|...++.|+.. +.++|+++..... .+..+++++|++|..+
T Consensus         3 ~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~-~~~~p~~~~~~~~-~~~~~~v~e~~~g~~~   80 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARK-GLPVPKVLASGES-DGWSYLLMEWIEGETL   80 (155)
T ss_pred             ceecccccccceEEEEecCCeEEEEecCCCCchhHHHHHHHHHHHHHHc-CCCCCeEEEEcCC-CCccEEEEEecCCeec
Confidence            4678889999999999988899999987532 24578999999999876 6789999887654 4689999999998755


Q ss_pred             CCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 022304          106 RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKN  185 (299)
Q Consensus       106 ~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      ...              ..                       ..+.                         .....+.+.
T Consensus        81 ~~~--------------~~-----------------------~~~~-------------------------~~~~~~~~~   98 (155)
T cd05120          81 DEV--------------SE-----------------------EEKE-------------------------DIAEQLAEL   98 (155)
T ss_pred             ccC--------------CH-----------------------HHHH-------------------------HHHHHHHHH
Confidence            211              00                       0000                         000111111


Q ss_pred             HhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh
Q 022304          186 LAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       186 l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      +..+..  ....+++|||++++||++++++...++||+ +.++++.+|++.+.
T Consensus        99 l~~lh~--~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~~~~d~~~~~  149 (155)
T cd05120          99 LAKLHQ--LPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGPPAFDLAAAL  149 (155)
T ss_pred             HHHHhC--CCceEEEecCCCcceEEEECCcEEEEEecccccCCChHHHHHHHH
Confidence            121211  123689999999999999886678999995 67999999999763

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat

Probab=99.59  E-value=5.2e-14  Score=127.97  Aligned_cols=220  Identities=19%  Similarity=0.250  Sum_probs=130.2

Q ss_pred             CCcchHHHHHHhcCCCc-----ceeeeeeeC--CccccceEEEEeC-----Cc-----cEEEEecCCC---------C--
Q 022304            6 LSDDPIREWILSEGKAT-----HITKICPVG--GGCINLASRYGTD-----AG-----SFFVKTNRSI---------G--   57 (299)
Q Consensus         6 ~~~~~i~~~l~~~~~~~-----~~~~~~~~~--~G~~n~~y~v~~~-----~g-----~~vlK~~~~~---------~--   57 (299)
                      .+++++.+-|++. +++     +-.+++.||  .|++|.+.+|+.+     ++     +|||||+..-         .  
T Consensus        13 vtw~dve~~l~~~-l~t~a~~g~~~~~~~Igdg~GFmS~I~lV~~dW~~~~~~~~LP~k~vlKI~S~~~~~~~~~~~~~~   91 (414)
T PF07914_consen   13 VTWEDVEEALQEA-LGTKAKFGENKKATNIGDGKGFMSRIALVEPDWTGEEEDENLPKKFVLKIPSQLALRALSENMKFE   91 (414)
T ss_pred             eeHHHHHHHHHHH-hCCCcCcCCCcceeeccCCcchheeEEEEEeeeccCccccCCCceEEEEeccHhhHHHHHHhhccc
Confidence            4678888888877 322     234566665  5678999999852     11     7999998520         0  


Q ss_pred             ------c------------chHHHHHHHHHHHHhc--CCCCCccceeecccC---CCceEEEEecccCCCC-------C-
Q 022304           58 ------P------------SMFEGEALGLGAMYET--RTIRAPRPFKVGALP---TGGSYIIMEFIEFGSS-------R-  106 (299)
Q Consensus        58 ------~------------~~~~~E~~~l~~L~~~--~~~~vP~~~~~~~~~---~~~~~~v~e~l~G~~~-------~-  106 (299)
                            .            ..-.+|..+++.+...  .++|+|++|......   .-.++++|||+++...       + 
T Consensus        92 ~~~~~~~e~~~~~~~~~l~~~HNrEv~~Y~~~~k~~~~~l~~PKvY~~k~f~~en~~kG~IimE~ven~~~~~~~e~~~~  171 (414)
T PF07914_consen   92 GGKGFDEEKEWEEFEKFLREMHNREVNFYKIFEKFNHPNLPYPKVYFGKKFDEENKLKGFIIMEYVENVHSMDMYENLSV  171 (414)
T ss_pred             cccccchhhHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCCCCceeEEEecCCCCCCCCEEEEeccCCceeecccCCCCH
Confidence                  0            1124788888888765  478999999876543   2368999999998642       1 


Q ss_pred             CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCC-CCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 022304          107 GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKW-TSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKN  185 (299)
Q Consensus       107 ~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      .+..++.+.||++|+.+...+.-.+  ....|     ..+ ...+..++....+............. ...+.+.+.++.
T Consensus       172 eql~~iv~aLA~~~A~sl~ls~ee~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~i~~  243 (414)
T PF07914_consen  172 EQLLQIVRALAKFHALSLKLSEEEK--KSISG-----PDFLEEMFGEFFSEEGMKKIFENLRKIFGF-FSPEKLEELIEK  243 (414)
T ss_pred             HHHHHHHHHHHHHHHhHccCCHHHh--hhccC-----chHHHHHHHHHhchHHHHHHHHHHHhhccc-cChHHHHHHHHH
Confidence            5678999999999999864110000  00000     000 00011121111111111111111100 001111222221


Q ss_pred             H----------------hccccCCCCCcceeccCCCCCCeeecCCCC-----eEEEccc-cccCCchhhhhhhh
Q 022304          186 L----------------APLFEGVNVEPCLLHGDLWSGNISSDKNGE-----PVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       186 l----------------~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~-----~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      +                .+.+   ..+++|||||+|..||||++++.     .+||||. ...|.|+.|++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~i~~~l---G~~~VL~HGDLw~~NiLw~k~~~g~~~l~AIIDwQ~vh~G~~~eDl~Rll  314 (414)
T PF07914_consen  244 FEHYLPDIKNFEKASNINKQL---GIKPVLVHGDLWSSNILWDKDSDGKLKLKAIIDWQCVHRGSPAEDLARLL  314 (414)
T ss_pred             HHHhcccHHhHHHHhhhHHhc---CCCcceecCCccHHheeeecCCchhHHHHHHHHHHHhhcCchHHHHHHHH
Confidence            1                2222   35899999999999999987543     3799996 57999999999764

In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=99.58  E-value=1.4e-13  Score=116.91  Aligned_cols=211  Identities=16%  Similarity=0.124  Sum_probs=127.5

Q ss_pred             eeeCCccccceEEEEeCCc-cEEEEecCCCCcchHHHHH---HHHHHHHhcCCCCCccceeecccCCCceEEEEecccC-
Q 022304           28 CPVGGGCINLASRYGTDAG-SFFVKTNRSIGPSMFEGEA---LGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF-  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~~~~~~E~---~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G-  102 (299)
                      .++.+|.++.|+.|.+.+| +.|||+..+...  ...|.   ..|++...   --+.+++..+.   ....+++|++.+ 
T Consensus         8 ~~~~~g~~s~V~pv~~~dG~~avLKl~~p~~~--~~~E~~g~~~L~~w~G---~GaVrll~~d~---~~~AlLLErl~~g   79 (253)
T PF04655_consen    8 GPPAHGSSSLVVPVRRADGTPAVLKLAPPHAE--AEHEARGEAALRWWNG---RGAVRLLAADP---ERGALLLERLDPG   79 (253)
T ss_pred             CCCCCCcceEEEEEEcCCCCeEEEEecCCccc--chhhhhHHhHhheeCC---CCceeeecccc---ccchhhhhhccCC
Confidence            3456788899999999887 899999986322  33444   44666654   34568998873   578999999954 


Q ss_pred             CCCC---------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCCh
Q 022304          103 GSSR---------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDS  173 (299)
Q Consensus       103 ~~~~---------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (299)
                      .++.         .....++..+++||.....+...+++         .    ..+|...+..     ........ .+.
T Consensus        80 ~~L~~~~~~g~d~~a~~i~a~l~~~L~~~~~~~~p~~l~---------~----l~~~~~~l~~-----~~~~~~~~-~~~  140 (253)
T PF04655_consen   80 RSLASLPREGDDDEATRIAAGLLRRLHRPAPEPLPSGLP---------P----LADWFARLFA-----RARERAGA-PPR  140 (253)
T ss_pred             CchhhcccccCchHHHHHHHHHHHHHhCCCCCCCCccch---------h----HHHHHHHHHH-----HhHhhhcc-ccH
Confidence            4442         12578899999999876421000110         0    1123222211     11110000 111


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhhhhhhhc---CC----C----
Q 022304          174 TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCA---GF----G----  242 (299)
Q Consensus       174 ~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla~~~~~---~~----~----  242 (299)
                         ..+++..+...+++.. +.+.+++|||+|++|||-...+.-..||+..+.|+|+||++.+...   ..    .    
T Consensus       141 ---~l~~~a~~~~~~Ll~~-~~~~~lLHGDLH~~NIL~~~~~~WlaIDPkgl~Gdp~yd~a~~l~n~~~~~~~~~~~~~i  216 (253)
T PF04655_consen  141 ---RLVDAAAALARELLAS-PGEEVLLHGDLHHGNILAAGRRGWLAIDPKGLVGDPAYDLAPLLRNPLDELPDADDPERI  216 (253)
T ss_pred             ---HHHHHHHHHHHHHhcC-CCcceeeccccchHhhhccCCCCceEeCCcccccccccCHHHHHhCccccccccccHHHH
Confidence               2223333323344443 4567999999999999986644356899999999999999976431   11    1    


Q ss_pred             hhhHHHhhhhCCCCCCHHHHHHHHHHHHHH
Q 022304          243 GSFYNSYFEVMPKQPGFEKRRDLYMLYHYL  272 (299)
Q Consensus       243 ~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l  272 (299)
                      ...++...+..+++   .+|+.-+.+.+.+
T Consensus       217 ~~r~~~la~~~gld---~~R~~~W~~~~~v  243 (253)
T PF04655_consen  217 RRRAALLAEAAGLD---RERILAWAFARAV  243 (253)
T ss_pred             HHHHHHHHHHHCcC---HHHHHHHHHHHHH
Confidence            13355555666666   3677666665554

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=99.53  E-value=1.3e-13  Score=121.01  Aligned_cols=217  Identities=17%  Similarity=0.226  Sum_probs=121.3

Q ss_pred             CCccccceEEEEeCC-----c-----cEEEEecCCC--------CcchHHHHHHHHHHHHhcC----------CCCCccc
Q 022304           31 GGGCINLASRYGTDA-----G-----SFFVKTNRSI--------GPSMFEGEALGLGAMYETR----------TIRAPRP   82 (299)
Q Consensus        31 ~~G~~n~~y~v~~~~-----g-----~~vlK~~~~~--------~~~~~~~E~~~l~~L~~~~----------~~~vP~~   82 (299)
                      |.|+.+.+|||+...     +     ++|+|..+..        ....+++|+.+++.+....          ...+|+.
T Consensus         2 Gd~y~s~~~rv~v~~~~~~~~~~~~~s~ivK~~p~~~~~~~~~~~~~~f~~E~~fY~~~~p~l~~~~~~~~~~~~~~P~~   81 (294)
T PF02958_consen    2 GDNYLSDMYRVTVTYELKGDGKNEPLSLIVKSPPTNPSRREFLREMGSFRREIFFYRELLPELEELQKEAGDPFKFFPKC   81 (294)
T ss_pred             CCcceeEEEEEEEEEEEccCCCceEEEEEEEeCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccceeeceE
Confidence            567888899977521     1     7999998731        1256789999888665321          1236888


Q ss_pred             eeecccCCCceEEEEecccCCCC---------C-CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccc---cCCCCC--
Q 022304           83 FKVGALPTGGSYIIMEFIEFGSS---------R-GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTP---QINKWT--  147 (299)
Q Consensus        83 ~~~~~~~~~~~~~v~e~l~G~~~---------~-~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~---~~~~~~--  147 (299)
                      +..... .+..++|||.+.....         + +.+..+.+.||++|+.+.....-   .+.......   ......  
T Consensus        82 ~~~~~~-~~~~~lvlEDL~~~g~~~~~~~~~l~~~~~~~~l~~LA~fHA~s~~~~~~---~~~~~~~~~~~~~~~~~~~~  157 (294)
T PF02958_consen   82 YYADED-PGDEVLVLEDLSEKGYRMGDRRDGLDLEHAELVLKKLAKFHAASWALEEK---DPELFEELSSGLFEEPFFRE  157 (294)
T ss_pred             EEeccC-CCceeeehhhhhhcCCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHh---Cchhhhhccccceeccchhh
Confidence            887643 3468999999864321         1 35788999999999998631100   000000000   000000  


Q ss_pred             --CCHHHHHHHhhhHHHHHHHHhhcCC-----hHHHHHHHHHHHHHhccccC-CCCCcceeccCCCCCCeeecCCC----
Q 022304          148 --SNWIEFYAEHRLGYQLKLALDQYGD-----STIYQRGHRLMKNLAPLFEG-VNVEPCLLHGDLWSGNISSDKNG----  215 (299)
Q Consensus       148 --~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~-~~~~~~liHgDl~~~Nvl~~~~~----  215 (299)
                        ..|..-+....+....+........     ..+......+.+.+..+... .....+|||||+|.+|||+..++    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vl~HGD~w~nNilf~~~~~g~~  237 (294)
T PF02958_consen  158 ELEEWFEEFFEQGLKAFIESLDDEWPEYEEYSEKLEALLDKFFERMQELVDPSKEPFNVLCHGDFWTNNILFKYDDDGKP  237 (294)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHhccccCCceEEEcCccCHHhEeEcccccccc
Confidence              0111111111111111111111000     11122223344444444422 13577999999999999996542    


Q ss_pred             -CeEEEccc-cccCCchhhhhhhhhcCCC--------hhhHHHhhh
Q 022304          216 -EPVILDPA-CYYGHNEAEFGMSWCAGFG--------GSFYNSYFE  251 (299)
Q Consensus       216 -~~~iID~~-~~~g~~~~Dla~~~~~~~~--------~~f~~~Y~~  251 (299)
                       .+.+|||. +.+|.|+.||+.+.+.+.+        +.+++.|.+
T Consensus       238 ~~~~liDfQ~~~~g~p~~Dl~~fl~~s~~~~~r~~~~~~ll~~Y~~  283 (294)
T PF02958_consen  238 IDVVLIDFQLARYGSPAIDLAYFLYTSLDPELRREHEDELLRHYHE  283 (294)
T ss_pred             ccceeeccccccCCCcHhHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             35899996 6799999999987543333        345666664

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=99.47  E-value=9.4e-14  Score=115.98  Aligned_cols=170  Identities=19%  Similarity=0.179  Sum_probs=92.7

Q ss_pred             ccEEEEecCCCCcch--HHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCCC-------CcHHHHHHHH
Q 022304           46 GSFFVKTNRSIGPSM--FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR-------GNQSVFGKKL  116 (299)
Q Consensus        46 g~~vlK~~~~~~~~~--~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~-------~~~~~lg~~L  116 (299)
                      .+|++|+++..+...  .+.|..+++.++..  --.|+++.....     ..+.+|++|.++.       .....+++.|
T Consensus         3 ~~~~~Ri~g~~t~~~idr~~E~~~~~~l~~~--g~~p~~~~~~~~-----g~v~e~i~g~~l~~~~~~~~~~~~~iA~~l   75 (211)
T PF01633_consen    3 EKYLVRIPGEGTENFIDRENENEALKLLSEA--GLGPKIIYFFEN-----GRVEEFIEGRTLSPEDFRNPEILKRIAKLL   75 (211)
T ss_dssp             SEEEEEEEESCGCSHHHHHHHHHHHHHHHHT--TSSS-EEEEETT-----EEEEE--SSEE--CGGGGSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCcccccCHHHHHHHHHHHHHc--CCCCeEEEEcCC-----CcEEEEecccccChhhccChHHHHHHHHHH
Confidence            479999998753323  35788889999875  367889988643     4677999998763       2368999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH-hhhHHHHHHHHhhc-CChHHHHHHHHHHHHHhccccCCC
Q 022304          117 AEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE-HRLGYQLKLALDQY-GDSTIYQRGHRLMKNLAPLFEGVN  194 (299)
Q Consensus       117 a~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~  194 (299)
                      ++||+...+.  ..  .        ....| ..+..+... ....  ........ ........+...+..+...+....
T Consensus        76 ~~lH~~~~~~--~~--~--------~~~~~-~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  140 (211)
T PF01633_consen   76 AKLHSIPISP--NS--K--------KPDLW-DRIDKYMNKKSEFL--FKRKKKKKSIDKEDLEDLQEELEELEKLLEKSN  140 (211)
T ss_dssp             HHHHTHHHTT--SS--S--------S-HHH-HHHHHHHHHHHTCC--CCHHTTTCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHhhccccc--cc--C--------cchHH-HHhhhhccchhhhh--hhhhhhccccccCCHHHHHHHHhhhhhhhhccC
Confidence            9999988611  00  0        00000 001111000 0000  00000000 000111223333344444443334


Q ss_pred             CCcceeccCCCCCCeee-cCCCCeEEEccc-cccCCchhhhhhhh
Q 022304          195 VEPCLLHGDLWSGNISS-DKNGEPVILDPA-CYYGHNEAEFGMSW  237 (299)
Q Consensus       195 ~~~~liHgDl~~~Nvl~-~~~~~~~iID~~-~~~g~~~~Dla~~~  237 (299)
                      .+.++||+|++++|||+ +.++...+|||+ +.++++.+|||.+.
T Consensus       141 ~~~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~n~~~fDia~~f  185 (211)
T PF01633_consen  141 SPLVFCHNDLNPGNILINNKDGEVKLIDFEYAGYNDRAFDIANFF  185 (211)
T ss_dssp             GGEEEE-S--SGGGEEETSSSSCEEE--GTT-EEEEHHHHHHHHH
T ss_pred             CCceEeeccCccccEEeccCCCeEEEecHHHHhhccchhhHHHHH
Confidence            67899999999999999 556668999996 88999999999764

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=99.38  E-value=6.2e-11  Score=102.12  Aligned_cols=199  Identities=16%  Similarity=0.154  Sum_probs=105.7

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      .+.+++ |.++.+|++...+.+.|+|.........+          .... .. |+++.......+.......+..|..+
T Consensus        10 ~~~~~~-g~t~~~~~~~~~g~~~~~~r~~~p~~~~~----------~~~~-~~-~~l~~~~~~~~~~~~~~q~~~~~~~l   76 (269)
T COG0510          10 KITPLN-GLTGYAFRIEGEGTRVFLKRNFEPFLPAL----------IFRL-IV-PKLLWLKRIANGGVLVAQYWENGRTL   76 (269)
T ss_pred             eeeecc-CCcceeEEeeCCCCeeeeecCCCcchHHH----------HHHh-hh-hhhhhhcccccCCceEEeeecccccc
Confidence            456666 77899999965555888887654322111          1111 11 44443322112333444444445444


Q ss_pred             C---CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHH
Q 022304          106 R---GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRL  182 (299)
Q Consensus       106 ~---~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (299)
                      +   .....++..|+++|........+.           ........|.....  .+.........  ....+...+.++
T Consensus        77 ~~~~~~~~~ia~~L~~lH~~~~~~~~~~-----------~~~~~~~~~~~~l~--~~~~~~~~~~~--~~~~~~~~~~~l  141 (269)
T COG0510          77 TPEDMNLKKIAHILKKLHNSVPLLHQLP-----------RSGSSFIEPKDYLE--LLWQQNSRAYR--DNHLLRKKLKEL  141 (269)
T ss_pred             CccccchHHHHHHHHHhcCccchHHHHH-----------hhcchHhhHHHHHH--HHHhhchHHhh--hhHHHHHHHHHH
Confidence            3   345788889999999554211111           00000022322221  11111111100  011122233334


Q ss_pred             HHHHhccccCCCCC-cceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhhc-CCCh----hhHHHhhhhCCC
Q 022304          183 MKNLAPLFEGVNVE-PCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWCA-GFGG----SFYNSYFEVMPK  255 (299)
Q Consensus       183 ~~~l~~~l~~~~~~-~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~~-~~~~----~f~~~Y~~~~~l  255 (299)
                      ...+.+.    +.+ .++||+|++++|+|.++.+...+|||+ ++.+||++|||.+... .+..    ..+..|.+..+.
T Consensus       142 ~~~l~~~----~~~~~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~~~DLA~~~~e~~~~~~~~~~~~~~~~~~~~~  217 (269)
T COG0510         142 RRALEEV----PKDDLVPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDPAFDLAALLSEYIFNHNELEDLYSAYLEKYGF  217 (269)
T ss_pred             HHHhhhc----CCCceeeecCCCCccceEEcCCCcEEEEecccCCCccHHHHHHHHHHHhccchhHHHHHHHHHHHhCCc
Confidence            3333333    334 799999999999999885669999996 8999999999987542 2322    255566655554


Q ss_pred             C
Q 022304          256 Q  256 (299)
Q Consensus       256 ~  256 (299)
                      .
T Consensus       218 ~  218 (269)
T COG0510         218 E  218 (269)
T ss_pred             h
Confidence            4

>KOG4720 consensus Ethanolamine kinase [Lipid transport and metabolism]

Probab=99.37  E-value=6.8e-12  Score=105.86  Aligned_cols=222  Identities=14%  Similarity=0.132  Sum_probs=136.7

Q ss_pred             HHHHHHhcCC--CcceeeeeeeCCccccceEEEEeCC---ccEEEEecCCCCcchHHH--HHHHHHHHHhcCCCCCccce
Q 022304           11 IREWILSEGK--ATHITKICPVGGGCINLASRYGTDA---GSFFVKTNRSIGPSMFEG--EALGLGAMYETRTIRAPRPF   83 (299)
Q Consensus        11 i~~~l~~~~~--~~~~~~~~~~~~G~~n~~y~v~~~~---g~~vlK~~~~~~~~~~~~--E~~~l~~L~~~~~~~vP~~~   83 (299)
                      +.++|++.-+  +..-++.+..++|-+|..+.+...+   ..+.+|++...+...+.+  |....+.|+.+ | -.|++|
T Consensus        68 a~eLlk~Lrp~W~~~~v~~~~fs~gitNkL~~~~vg~~~e~~v~vrvyg~~te~vIdre~Ev~afk~L~a~-G-~ap~Ly  145 (391)
T KOG4720|consen   68 ALELLKKLRPHWKPPEVTFKRFSDGITNKLFSCYVGENMEDHVLVRVYGHNTELVIDRENEVIAFKLLAAY-G-FAPKLY  145 (391)
T ss_pred             HHHHHHHhcccCCccceeeeeeccchhHHHHHhhcccccceeEEEEeccCCCceeeccHHHHHHHHHHHHc-C-cChhhh
Confidence            4556666622  4455667788899888777665544   378889998755444444  45555677776 2 457788


Q ss_pred             eecccCCCceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q 022304           84 KVGALPTGGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE  156 (299)
Q Consensus        84 ~~~~~~~~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (299)
                      ..-     ...++++|++|..+.       ..+..+++.+|+||+.-.+    |        ..|..+-|. ....|+..
T Consensus       146 ~tF-----~NGLvyefi~g~tL~p~~mr~pki~~lIAr~mak~H~~~~~----g--------~~pkp~lw~-km~~f~~l  207 (391)
T KOG4720|consen  146 GTF-----NNGLVYEFIQGKTLEPEHMREPKIFRLIARRMAKIHSIVAT----G--------GNPKPPLWE-KMRKFLQL  207 (391)
T ss_pred             hee-----cCceEEeeecCcccChhhccChHHHHHHHHHHHHhheeccC----C--------CCCCCcHHH-HHHHHHHh
Confidence            653     347999999999873       4678999999999998863    1        122222231 12233321


Q ss_pred             hhhHHHHHHHHhhc-CChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCC-CeEEEcc-ccccCCchhhh
Q 022304          157 HRLGYQLKLALDQY-GDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNG-EPVILDP-ACYYGHNEAEF  233 (299)
Q Consensus       157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~-~~~iID~-~~~~g~~~~Dl  233 (299)
                      ..- ...+...++. .+..-.+.+.+-+.++++.+..+..|.++||.||=++||+.+... .+-+||. .+.+...+|||
T Consensus       208 v~~-~f~de~~kq~~~~~~~~~~L~~Ei~~l~E~l~~L~sPVVFcHNDLL~~Niiy~~~~~~v~fIDYEYa~yNY~afDI  286 (391)
T KOG4720|consen  208 VPT-SFEDEINKQNLFDEPSPEDLGEEISKLKEMLSMLKSPVVFCHNDLLCGNIIYDSEKGSVEFIDYEYAGYNYQAFDI  286 (391)
T ss_pred             cCc-hhhcccchhhcccCCCHHHHHHHHHHHHHHHHhhCCCeEEeecchhhcceeeccccCcEEEEeecccccchhheeh
Confidence            000 0000001111 010002233334445555555555789999999999999998653 4679997 58999999999


Q ss_pred             hh-h-hhcCC--------C-----hhhHHHhhhhC
Q 022304          234 GM-S-WCAGF--------G-----GSFYNSYFEVM  253 (299)
Q Consensus       234 a~-~-~~~~~--------~-----~~f~~~Y~~~~  253 (299)
                      +. + .+.|.        +     -+|+..|.+..
T Consensus       287 gNHFnE~aGv~evDYSlyp~rE~Q~qwl~~YLq~~  321 (391)
T KOG4720|consen  287 GNHFNEYAGVEEVDYSLYPTREEQLQWLRDYLQAY  321 (391)
T ss_pred             hhhHHhhcCCCccchhcCCCHHHHHHHHHHHHhhc
Confidence            95 2 33332        1     16788887764

>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]

Probab=99.36  E-value=2e-11  Score=103.21  Aligned_cols=178  Identities=14%  Similarity=0.100  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC-----CCc---HHHHHHHHHHHHhcCCCCCCCCCC
Q 022304           61 FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS-----RGN---QSVFGKKLAEMHKAGKSSKGFGFD  132 (299)
Q Consensus        61 ~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~-----~~~---~~~lg~~La~lH~~~~~~~~~~~~  132 (299)
                      +..-+.+-..|... |+.||+++..|.   ...++++|.+.-+..     .+.   ..+.++.|+.+|....+..     
T Consensus        67 v~~Fvai~~lL~~~-Gv~vPqIla~Dl---d~GfllLedLG~e~~l~~~g~~~~ery~~a~~ll~~~h~~~~~~q-----  137 (351)
T COG3178          67 VRPFVAIAGLLAGQ-GVRVPQILAADL---DQGFLLLEDLGRETFLQALGEPIAERYAAADALLAAAHGALVPLQ-----  137 (351)
T ss_pred             hhHHHHHHHHHhcC-CcCccHHhhhch---hcCchhHhhcCcHHHHHhcCCCchhHHHHHHHHHHHHhcCcchhh-----
Confidence            33445566677765 899999999884   588999998855432     123   3467799999999887421     


Q ss_pred             CCCccc---ccccCCCCCCCHHHHHH-Hhhh--HHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCC
Q 022304          133 VDNTIG---STPQINKWTSNWIEFYA-EHRL--GYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWS  206 (299)
Q Consensus       133 ~~~~~g---~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~  206 (299)
                      .....|   .+|.   . +  +...+ +..+  +.++..-...-.+....+.++++.+.+..-+.  ..+.++||.|||+
T Consensus       138 ~~~~~g~~~~lp~---f-D--r~am~~E~sLf~dWylpr~~g~~l~~~~r~~~~aiwd~Lid~~~--~~~~vlvhRDfh~  209 (351)
T COG3178         138 KAVREGSTHVLPP---F-D--RAAMRREASLFVDWYLPRHLGRPLTDAERQAWEAIWDGLIDSLL--AQPKVLVHRDFHS  209 (351)
T ss_pred             cccCCCCCCcCCc---c-c--HHHHHHHHHhhHHhhhHHHhCCCCCHHHHHHHHHHHHHHHHHHh--cCCceeeeccccC
Confidence            001111   1111   1 0  11111 0001  11111111111122334445555555433222  2588999999999


Q ss_pred             CCeeecCC----CCeEEEcc-ccccCCchhhhhhhhh---cCCC----hhhHHHhhhhCCC
Q 022304          207 GNISSDKN----GEPVILDP-ACYYGHNEAEFGMSWC---AGFG----GSFYNSYFEVMPK  255 (299)
Q Consensus       207 ~Nvl~~~~----~~~~iID~-~~~~g~~~~Dla~~~~---~~~~----~~f~~~Y~~~~~l  255 (299)
                      .|+|+..+    ..++|||| ++++|+..||++.+..   ..++    .+.+..|.+.+..
T Consensus       210 ~NLmw~~~~~g~~rvGvlDFQDA~iGP~aYDvasL~~DArvt~~pe~~~~~l~rY~~~r~~  270 (351)
T COG3178         210 RNLMWTADRAGADRVGVLDFQDALIGPIAYDVASLLRDARVTWSPERELALLDRYWAARRA  270 (351)
T ss_pred             ccceecCCccCCCCCceeehhhhhcCcchhhHHHHHhhccccCCHHHHHHHHHHHHHhhhh
Confidence            99999876    24899998 7999999999998742   2344    3678999987653

>COG4857 Predicted kinase [General function prediction only]

Probab=99.35  E-value=1.6e-11  Score=102.94  Aligned_cols=194  Identities=19%  Similarity=0.175  Sum_probs=115.3

Q ss_pred             eeeeeeeCCccccceEEEEeCCc--cEEEEecCCC----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           24 ITKICPVGGGCINLASRYGTDAG--SFFVKTNRSI----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      --.+..+|.|..|.+|.|+...|  ..|+|.+-+.          ...+-..|+..|..-.++.+--||++|.++.   .
T Consensus        32 ~ltvkEIGDGNlNyvF~V~~~~~~ka~ivKQA~py~r~vGeswPL~l~Rs~iE~~aL~rq~~~aPh~VPeIyf~De---~  108 (408)
T COG4857          32 HLTVKEIGDGNLNYVFIVEGKIGGKAAIVKQALPYVRLVGESWPLPLKRSFIEYHALRRQNARAPHFVPEIYFFDE---I  108 (408)
T ss_pred             ceEEEEecCCceeEEEEEecCCCCeehhhhhhhhHHHhcCCcCCCcchHHHHHHHHHHHhhccCCCCcceeEeecc---h
Confidence            34578999999999999998655  7888987531          1122345777776666666778999999984   5


Q ss_pred             ceEEEEecc-----------cCCCCCCcHHHHHHHHHHHHhcCCCC-----------CCCCCCCCCccc-------cccc
Q 022304           92 GSYIIMEFI-----------EFGSSRGNQSVFGKKLAEMHKAGKSS-----------KGFGFDVDNTIG-------STPQ  142 (299)
Q Consensus        92 ~~~~v~e~l-----------~G~~~~~~~~~lg~~La~lH~~~~~~-----------~~~~~~~~~~~g-------~~~~  142 (299)
                      ...++||++           +|+.++.....+|..|++.--..+..           ..|.  .+..+.       +-|.
T Consensus       109 mavivMEdls~~kilR~~LI~Gr~~P~~~~~igeFlarTLf~~sDl~m~~k~kK~~vk~Ft--NpELCDItE~LVFtdPy  186 (408)
T COG4857         109 MAVIVMEDLSPHKILRRALIDGRILPNIVDDIGEFLARTLFRGSDLSMNTKDKKADVKLFT--NPELCDITENLVFTDPY  186 (408)
T ss_pred             hhhhhHhhhhHHHHHHHHHhccccCccHHHHHHHHHHHHHHhccccccchHhHHHHHHHhC--CchhhcchhceeecCcc
Confidence            888999886           45555666778888888743333210           0011  111110       0011


Q ss_pred             CCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc
Q 022304          143 INKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP  222 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~  222 (299)
                      .   ..+-..+-. .++.+....+.+   +..+.-.    .++++..+..  ..-.|||||+|+|.|++++. ...+||+
T Consensus       187 f---d~d~Nr~~~-~~l~~fVe~L~~---n~dlkve----a~kLk~~F~~--~aetLiHGDLHsGSIfvte~-etkvIDP  252 (408)
T COG4857         187 F---DADRNRHTI-PQLDPFVEELRK---NRDLKVE----AQKLKHKFMA--YAETLIHGDLHSGSIFVTEK-ETKVIDP  252 (408)
T ss_pred             c---ccccccccc-ccchHHHHHHhc---Ccchhhh----HHHHHHHHHH--HhHHHhccccccCcEEeecC-cceeeCc
Confidence            0   000000000 012222222211   1111111    2234444432  35689999999999999755 4889998


Q ss_pred             c-cccCCchhhhhhh
Q 022304          223 A-CYYGHNEAEFGMS  236 (299)
Q Consensus       223 ~-~~~g~~~~Dla~~  236 (299)
                      + ++|||-+||++++
T Consensus       253 EFaFYGPmafDiG~~  267 (408)
T COG4857         253 EFAFYGPMAFDIGML  267 (408)
T ss_pred             cccccCcchhhHHHH
Confidence            6 8999999999986

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.30  E-value=4e-11  Score=98.95  Aligned_cols=155  Identities=18%  Similarity=0.209  Sum_probs=98.9

Q ss_pred             eCCccccceEEEEeCCccEEEEecCCCC-----------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           30 VGGGCINLASRYGTDAGSFFVKTNRSIG-----------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~~g~~vlK~~~~~~-----------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.|..+.+|+....+..+++|......           ...+..|.+++..|... ++++|.++..+   ....+++||
T Consensus         2 ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~i~~p~~~~~~---~~~~~lv~e   77 (199)
T TIGR03724         2 IAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKA-GVNTPVVYDVD---PDNKTIVME   77 (199)
T ss_pred             CCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEE---CCCCEEEEE
Confidence            4667788999998666689999854311           13355799999999875 68999998875   346799999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      +++|.++.       ..+..    ..                          ..      +                   
T Consensus        78 ~~~g~~l~-------~~~~~----~~--------------------------~~------~-------------------   95 (199)
T TIGR03724        78 YIEGKPLK-------DVIEE----GN--------------------------DE------L-------------------   95 (199)
T ss_pred             EECCccHH-------HHHhh----cH--------------------------HH------H-------------------
Confidence            99997441       11100    00                          00      0                   


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh------hc----CCC----h
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW------CA----GFG----G  243 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~------~~----~~~----~  243 (299)
                      +.++...+..+.     ..+++|||++|+|++++ ++.+.+|||+ +..+++..|.+.-.      ..    ...    .
T Consensus        96 ~~~i~~~l~~lH-----~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (199)
T TIGR03724        96 LREIGRLVGKLH-----KAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSDEIEDKAVDLHVLKRSLESTHPDKAEELFE  169 (199)
T ss_pred             HHHHHHHHHHHH-----HCCeecCCCCcceEEEE-CCcEEEEECCCCcCCCcHHhhhchHHHHHHHHhhhCchhHHHHHH
Confidence            001111111111     24789999999999998 5668999996 56888888876421      11    111    3


Q ss_pred             hhHHHhhhhCCCC
Q 022304          244 SFYNSYFEVMPKQ  256 (299)
Q Consensus       244 ~f~~~Y~~~~~l~  256 (299)
                      .|+++|.+..+.+
T Consensus       170 ~fl~~Y~~~~~~~  182 (199)
T TIGR03724       170 AFLEGYREEFGEA  182 (199)
T ss_pred             HHHHHHHhhcccH
Confidence            6778888765443

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.28  E-value=3.8e-11  Score=95.42  Aligned_cols=153  Identities=19%  Similarity=0.173  Sum_probs=97.4

Q ss_pred             eCCccccceEEEEeCCccEEEEecCCC-----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           30 VGGGCINLASRYGTDAGSFFVKTNRSI-----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~~g~~vlK~~~~~-----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +..|..+.+|...--+.+.|+|.-.+.           .+.+...|+.++..+... |+|+|.++.++.   ....++||
T Consensus         4 i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~-GV~~P~v~dvD~---~~~~I~me   79 (204)
T COG3642           4 IKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREA-GVPVPIVYDVDP---DNGLIVME   79 (204)
T ss_pred             hhCCcceeEEeeeccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCeEEEEcC---CCCEEEEE
Confidence            456667777777554447788764331           124457899999999876 899999999984   57899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|..+.+.       +-.-   ..                           +.                      ...
T Consensus        80 ~I~G~~lkd~-------l~~~---~~---------------------------~~----------------------~r~  100 (204)
T COG3642          80 YIEGELLKDA-------LEEA---RP---------------------------DL----------------------LRE  100 (204)
T ss_pred             EeCChhHHHH-------HHhc---ch---------------------------HH----------------------HHH
Confidence            9999743100       0000   00                           00                      001


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhh----hh--hc----C---CChh
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGM----SW--CA----G---FGGS  244 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~----~~--~~----~---~~~~  244 (299)
                      +=+++.+   +     -...+||||+.+.|+++++++ +.+|||. +.+.+-.-|.|+    +.  +.    .   .-++
T Consensus       101 vG~~vg~---l-----H~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s~~~Ed~aVDl~Vleral~sth~~~e~l~~~  171 (204)
T COG3642         101 VGRLVGK---L-----HKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFSDEVEDKAVDLHVLERALESTHEKAEELFAA  171 (204)
T ss_pred             HHHHHHH---H-----HhcCeecCCCccceEEEeCCc-EEEEECCcccccccHHhhhchHHHHHHHHHhccccHHHHHHH
Confidence            1111221   1     146899999999999997665 9999985 556666666664    31  11    1   1258


Q ss_pred             hHHHhhhhCC
Q 022304          245 FYNSYFEVMP  254 (299)
Q Consensus       245 f~~~Y~~~~~  254 (299)
                      |++||.+..+
T Consensus       172 f~~gY~~~~~  181 (204)
T COG3642         172 FLEGYREEFG  181 (204)
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.26  E-value=9e-11  Score=98.12  Aligned_cols=92  Identities=15%  Similarity=0.058  Sum_probs=66.4

Q ss_pred             HHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC---Ccc---------hHHHHHHHHHHHHhcCCCCC
Q 022304           12 REWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI---GPS---------MFEGEALGLGAMYETRTIRA   79 (299)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~---~~~---------~~~~E~~~l~~L~~~~~~~v   79 (299)
                      .+++... +..+..-+..+++|..+.||.++.+.+.+++|..++.   ...         .+++|+..+..|.+. ++++
T Consensus        22 ~~~~~~~-l~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~-GI~~   99 (232)
T PRK10359         22 KEIFDDF-LSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSE-GLAS   99 (232)
T ss_pred             HHHHHHH-hhCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHC-CCCc
Confidence            3445455 4556667778888888999999887679999999752   111         157888888888654 7899


Q ss_pred             ccceeecccC-----CCceEEEEecccCCCC
Q 022304           80 PRPFKVGALP-----TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        80 P~~~~~~~~~-----~~~~~~v~e~l~G~~~  105 (299)
                      |..+......     .+..+++|||++|.++
T Consensus       100 ~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL  130 (232)
T PRK10359        100 LNDFYLLAERKTLRYAHTYIMLIEYIEGVEL  130 (232)
T ss_pred             ceEeeeecccccccccCCeEEEEEEECCccH
Confidence            8877554321     3578999999999744

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.23  E-value=2.3e-10  Score=97.23  Aligned_cols=71  Identities=18%  Similarity=0.123  Sum_probs=53.6

Q ss_pred             CccccceEEEEeCCccEEEEecCCC----------------CcchHHHHHHHHHHHHhcCCCCCccceeecccCC---Cc
Q 022304           32 GGCINLASRYGTDAGSFFVKTNRSI----------------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPT---GG   92 (299)
Q Consensus        32 ~G~~n~~y~v~~~~g~~vlK~~~~~----------------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~---~~   92 (299)
                      .|..|.+|+|++++++++||.+...                ......+|.+.+..|... +++||+++.......   ..
T Consensus        42 ~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~-gi~vP~pl~~~~~~~~~~~~  120 (239)
T PRK01723         42 AKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEA-GLPVPRPIAARVVRHGLFYR  120 (239)
T ss_pred             CCCCccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhC-CCCCceeEeeeeeecCccee
Confidence            5567999999999889999988421                123467799999999876 799999998744322   24


Q ss_pred             eEEEEecccCC
Q 022304           93 SYIIMEFIEFG  103 (299)
Q Consensus        93 ~~~v~e~l~G~  103 (299)
                      .++++++++|.
T Consensus       121 ~~lV~e~l~G~  131 (239)
T PRK01723        121 ADILIERIEGA  131 (239)
T ss_pred             eeEEEEecCCC
Confidence            56999999984

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=99.22  E-value=7.1e-11  Score=99.25  Aligned_cols=136  Identities=21%  Similarity=0.231  Sum_probs=96.4

Q ss_pred             eeeCCccccceEEEEeCCc-cEEEEecCCC-------------------------CcchHHHHHHHHHHHHhcCCCCCcc
Q 022304           28 CPVGGGCINLASRYGTDAG-SFFVKTNRSI-------------------------GPSMFEGEALGLGAMYETRTIRAPR   81 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~-------------------------~~~~~~~E~~~l~~L~~~~~~~vP~   81 (299)
                      .++|-|-.+.+|.+.+.+| ++++|+.+..                         ++...++|+++|+.|... |++||+
T Consensus        97 ~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~-G~~VP~  175 (304)
T COG0478          97 TKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPE-GVKVPK  175 (304)
T ss_pred             cccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhc-CCCCCC
Confidence            5788899999999999766 8999988531                         112346899999999987 799999


Q ss_pred             ceeecccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHH
Q 022304           82 PFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGY  161 (299)
Q Consensus        82 ~~~~~~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  161 (299)
                      |+...     +++++||+++|.++...         ++   ..                       .+         .. 
T Consensus       176 P~~~n-----RHaVvMe~ieG~eL~~~---------r~---~~-----------------------en---------~~-  205 (304)
T COG0478         176 PIAWN-----RHAVVMEYIEGVELYRL---------RL---DV-----------------------EN---------PD-  205 (304)
T ss_pred             ccccc-----cceeeeehcccceeecc---------cC---cc-----------------------cC---------HH-
Confidence            99986     66999999999765210         00   00                       00         00 


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-ccc-cCCchhhhh
Q 022304          162 QLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-ACY-YGHNEAEFG  234 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~~-~g~~~~Dla  234 (299)
                                     +.++.+++.+..+.     ..+++||||..-||++++||.+.+||| .+. .++|..+.-
T Consensus       206 ---------------~il~~il~~~~~~~-----~~GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~hp~a~e~  260 (304)
T COG0478         206 ---------------EILDKILEEVRKAY-----RRGIVHGDLSEFNILVTEDGDIVVIDWPQAVPISHPDAEEL  260 (304)
T ss_pred             ---------------HHHHHHHHHHHHHH-----HcCccccCCchheEEEecCCCEEEEeCcccccCCCCCHHHH
Confidence                           11122222233222     368999999999999999988999997 664 788876543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.22  E-value=1.7e-10  Score=96.09  Aligned_cols=139  Identities=15%  Similarity=0.128  Sum_probs=91.5

Q ss_pred             eeeCCccccceEEEEeCCccEEEEecCCCC-----------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           28 CPVGGGCINLASRYGTDAGSFFVKTNRSIG-----------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-----------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      +.++.|..+.+|+....++.+++|...+..           ......|.+.+..+... ++++|.++..+   ....+++
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~i~~p~~~~~~---~~~~~lv   77 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKA-GVNVPAVYFVD---PENFIIV   77 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCeEEEEe---CCCCEEE
Confidence            467888889999998776789999765321           12356788899888765 68999998765   3577999


Q ss_pred             EecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHH
Q 022304           97 MEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIY  176 (299)
Q Consensus        97 ~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (299)
                      |||++|.++.       ..+..    ..                         + ..   ..+                 
T Consensus        78 ~e~~~G~~L~-------~~~~~----~~-------------------------~-~~---~~i-----------------  100 (211)
T PRK14879         78 MEYIEGEPLK-------DLINS----NG-------------------------M-EE---LEL-----------------  100 (211)
T ss_pred             EEEeCCcCHH-------HHHHh----cc-------------------------H-HH---HHH-----------------
Confidence            9999997541       11110    00                         0 00   001                 


Q ss_pred             HHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhh
Q 022304          177 QRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGM  235 (299)
Q Consensus       177 ~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~  235 (299)
                        +.++...+..+.     ..+++|||++|+|||++ ++.+.+|||+ +..+++..|.+.
T Consensus       101 --~~~i~~~l~~lH-----~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~~~~~~~~~  152 (211)
T PRK14879        101 --SREIGRLVGKLH-----SAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFSKDLEDRAV  152 (211)
T ss_pred             --HHHHHHHHHHHH-----hCCcccCCCCcccEEEE-CCCEEEEECCcccCCCcHHhhhc
Confidence              011111111111     24789999999999998 5568999996 568888888774

>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase

Probab=99.10  E-value=5e-09  Score=97.70  Aligned_cols=252  Identities=15%  Similarity=0.124  Sum_probs=135.7

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC--CC---ceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP--TG---GSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~--~~---~~~~v~e~l  100 (299)
                      ++..+++.++|....+   +.++|+|+++.-... ..=|.++.++|.+.+--.+|.++..-...  +|   .-.++.+|+
T Consensus       169 ~~r~l~~EQSNtSi~~---g~~~ilKlyRrl~~G-~nPe~E~~r~Lte~gf~~vP~llG~v~~~~~~g~~~tla~lq~fV  244 (528)
T TIGR02457       169 EVRLLSAEQSNSSLVV---GDRVVLKLYRKVEPG-INPEIEMGRYLTAAGYANIPPLLGSVERVGGDQAPHTLGLLQGYV  244 (528)
T ss_pred             ceeecCCCcCceEEEE---CCEEEEEEecccCCC-CCcchHHHHHHHhCCCccCCcccEEEEEEcCCCCEEeeehHhhhh
Confidence            3456666677777666   348999999852111 22357778889875434689998764321  23   345677888


Q ss_pred             cCCCCC----------------------------------CcHHHHHHHHHHHHhcCCCCC---CCCCCCCCcccccccC
Q 022304          101 EFGSSR----------------------------------GNQSVFGKKLAEMHKAGKSSK---GFGFDVDNTIGSTPQI  143 (299)
Q Consensus       101 ~G~~~~----------------------------------~~~~~lg~~La~lH~~~~~~~---~~~~~~~~~~g~~~~~  143 (299)
                      ++..-.                                  ..+..+|+.+|.||...+...   .|+.        .|..
T Consensus       245 ~nqgDaW~~tl~~l~r~~e~~~~~~~~~~~~~~~~~~~~~~~a~~LG~rtAemH~aLA~~~~~~aF~p--------ep~~  316 (528)
T TIGR02457       245 QNQGDAWRWTLGHLKRYIEEQLSPCANGALAPTLIGAGYLEFAGLLGRRLAELHLALAAGGEDPAFAP--------EPIS  316 (528)
T ss_pred             CCCccHHHHHHHHHHHHHHhhhccccccccChhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence            875310                                  015679999999999887421   1221        1110


Q ss_pred             CCCCCCHHHHHHHhhhHHHHHHHHhh--cCChHHHH-------HHHHHHHHHhccccCCCCCcce---eccCCCCCCeee
Q 022304          144 NKWTSNWIEFYAEHRLGYQLKLALDQ--YGDSTIYQ-------RGHRLMKNLAPLFEGVNVEPCL---LHGDLWSGNISS  211 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~l---iHgDl~~~Nvl~  211 (299)
                      ......|.+-.. .++...++.+...  ..+....+       .-+++.+++..+...  ...++   ||||+|.||||+
T Consensus       317 ~~~~~~~~~~~~-~~~~~a~~~L~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~--~~~~~k~RiHGD~HLgqvL~  393 (528)
T TIGR02457       317 TLYQRSWYQDMR-AQAERALQLLAQSRDGLPAAARALADRLLAQRKELAAHLRPLVKR--EIDGLKIRIHGDFHLGQVLV  393 (528)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhc--CCCcceEeEecCcchhcEEE
Confidence            001112222211 1222222222111  11222122       222233333333332  23345   999999999999


Q ss_pred             cCCCCeEEEccc--c--------ccCCchhhhhh-h-hh--------cC-----CC------------------hhhHHH
Q 022304          212 DKNGEPVILDPA--C--------YYGHNEAEFGM-S-WC--------AG-----FG------------------GSFYNS  248 (299)
Q Consensus       212 ~~~~~~~iID~~--~--------~~g~~~~Dla~-~-~~--------~~-----~~------------------~~f~~~  248 (299)
                      ++++ ..||||+  +        .--.|..|+|- + +|        ..     .+                  .+|+++
T Consensus       394 t~~d-~~IiDFEGEP~Rpl~ERR~k~sPLRDVAGMLRSf~YAa~~~~~~~~~~~~~~~~~~l~~~a~~W~~~~~~aFL~~  472 (528)
T TIGR02457       394 VQDD-AVLIDFEGEPARPLAERRAKRSPLRDVAGMLRSFDYAAAVALRRAAAAGAPEDRPALEAWAEQFRYRAGQAFLAA  472 (528)
T ss_pred             eCCC-eEEEcCCCCCCCChHHhccCCChHHHHHHHHHHHHHHHHHHhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8766 6699974  2        23678999984 4 21        11     00                  259999


Q ss_pred             hhhhCC------CCC-CHHHHHHHHHHHHHH---HHHHhhCcccHHHHHHHHHHH
Q 022304          249 YFEVMP------KQP-GFEKRRDLYMLYHYL---NHYNLFGSGYRSSALSIIDDY  293 (299)
Q Consensus       249 Y~~~~~------l~~-~~~~r~~~~~l~~~l---~~~~~~~~~~~~~~~~~~~~~  293 (299)
                      |.+...      .++ +....+.+|.+-.++   ..-....++|.....+.+.++
T Consensus       473 Y~~~~~~~~~~p~d~~~~~~LL~~flLeKA~YE~~YE~~nRP~Wv~IPL~gi~~l  527 (528)
T TIGR02457       473 YREAMDASPLVPTEPRDAEALLRLFLLEKAAYELCYELANRPEWLPVPLNGLLRL  527 (528)
T ss_pred             HHHhhcCcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Confidence            998653      121 223344455444433   222334578888777776665

Three pathways for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium may favor trehalose, physiological concentrations of trehalose may be much greater than that of maltose and TreS may act largely in its degradation. This model describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.

>PRK09902 hypothetical protein; Provisional

Probab=99.02  E-value=1e-08  Score=84.28  Aligned_cols=181  Identities=11%  Similarity=0.059  Sum_probs=109.2

Q ss_pred             cchHHHHHHhcCCCcceeeeeeeCC--ccccceEEEEeCCccEEEEecCC---------CCcchHHHHHHHHHHHHhcCC
Q 022304            8 DDPIREWILSEGKATHITKICPVGG--GCINLASRYGTDAGSFFVKTNRS---------IGPSMFEGEALGLGAMYETRT   76 (299)
Q Consensus         8 ~~~i~~~l~~~~~~~~~~~~~~~~~--G~~n~~y~v~~~~g~~vlK~~~~---------~~~~~~~~E~~~l~~L~~~~~   76 (299)
                      .+++..|....     ..-+++...  |..|.|+++..++..|++|....         -.+..+.+|...++.|.+. +
T Consensus         7 ~~~f~~~w~~~-----~~wve~pN~~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~-G   80 (216)
T PRK09902          7 YDEFNHWWATE-----GDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERA-G   80 (216)
T ss_pred             hhhHHHHHhCC-----CceecCCCcCCCCcceEEEEEeCCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHc-C
Confidence            34555666444     123444433  55689999998777899997752         2346688999999999987 7


Q ss_pred             CCCccceeecccCC---CceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHH
Q 022304           77 IRAPRPFKVGALPT---GGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEF  153 (299)
Q Consensus        77 ~~vP~~~~~~~~~~---~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (299)
                      +|||+|++.+....   -..++|.+.++|...      |...+..- ....                     +...    
T Consensus        81 vPVP~pvf~~~~k~~~~~rA~LVTe~L~g~~~------L~~~l~~~-~~~~---------------------~~~~----  128 (216)
T PRK09902         81 VIVPKIVFGEAVKIEGEWRALLVTEDMAGFIS------IADWYAQH-AVSP---------------------YSDE----  128 (216)
T ss_pred             CCCCccceeeeeccCCceEEEEEEEeCCCCcc------HHHHHhcC-CcCC---------------------cchH----
Confidence            99999996654331   257889999988522      22222110 0000                     0000    


Q ss_pred             HHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCC--eEEEcccc------c
Q 022304          154 YAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGE--PVILDPAC------Y  225 (299)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~--~~iID~~~------~  225 (299)
                           ..               ...+.++...+..+.     ..+++|||+.+-||+++.++.  +.+||++.      .
T Consensus       129 -----~k---------------~~il~~va~~ia~LH-----~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~~l~~  183 (216)
T PRK09902        129 -----VR---------------QAMLKAVALAFKKMH-----SVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRR  183 (216)
T ss_pred             -----HH---------------HHHHHHHHHHHHHHH-----HCCCcCCCCCHhheeecCCCCeeEEEEEhhccchhhhh
Confidence                 00               011122222222222     468999999999999985665  78999752      1


Q ss_pred             cCCchhhhhhhh-h-cCCCh----hhHHHhhh
Q 022304          226 YGHNEAEFGMSW-C-AGFGG----SFYNSYFE  251 (299)
Q Consensus       226 ~g~~~~Dla~~~-~-~~~~~----~f~~~Y~~  251 (299)
                      .....-||..+. . .++++    .|+.+|.+
T Consensus       184 ~~~~~~Dl~~l~r~~~~~s~~~~~~~~~~y~~  215 (216)
T PRK09902        184 DKAINHDFRQLEKYLEPIPKADWEQVKAYYYA  215 (216)
T ss_pred             hhhhHhHHHHHHHhccCCCHHHHHHHHHHHhc
Confidence            355577887763 2 34553    46777753

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.01  E-value=3.3e-09  Score=97.84  Aligned_cols=100  Identities=18%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             cccCCcchHHHHHHhcCCCcceee------eeeeCCccccceEEEEeCCc-cEEEEecCCCCcch---------------
Q 022304            3 VAALSDDPIREWILSEGKATHITK------ICPVGGGCINLASRYGTDAG-SFFVKTNRSIGPSM---------------   60 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~~~---------------   60 (299)
                      |..|+.+++.+.|.+. +|..+.+      -+|++.|...+||+.+..+| .++||+-++.-...               
T Consensus        93 v~p~~~~~~~~~l~~e-lg~~~~~~F~~fd~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~  171 (437)
T TIGR01982        93 VPPFDFKVARKVIEAA-LGGPLEELFAEFEEKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIV  171 (437)
T ss_pred             CCCCCHHHHHHHHHHH-hCcCHHHHHhhCCCcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHH
Confidence            5678899999999887 5543332      36799898999999998766 89999987642212               


Q ss_pred             ----------------------------HHHHHHHHHHHHh----cCCCCCccceeecccCCCceEEEEecccCCCCC
Q 022304           61 ----------------------------FEGEALGLGAMYE----TRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR  106 (299)
Q Consensus        61 ----------------------------~~~E~~~l~~L~~----~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~  106 (299)
                                                  +..|++.+..+++    ...+.+|+++...   .+..+++|||++|.++.
T Consensus       172 ~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~---~~~~vLvmE~i~G~~L~  246 (437)
T TIGR01982       172 ERLSPDSRRLRPTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYVPEVYWDR---TSERVLTMEWIDGIPLS  246 (437)
T ss_pred             HHhCccccccCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCEEeCCEehhh---cCCceEEEEeECCcccc
Confidence                                        2234444444432    2357889988644   24679999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.99  E-value=5.9e-09  Score=85.27  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCC
Q 022304           62 EGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        62 ~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      ++|++.|+.|.+. |+|||+|+...     ..+++||++.|..
T Consensus        74 ~kE~r~L~rl~~~-Gv~vP~pi~~~-----~~~lvME~Ig~~~  110 (197)
T cd05146          74 EKEMHNLKRMQKA-GIPCPEVVVLK-----KHVLVMSFIGDDQ  110 (197)
T ss_pred             HHHHHHHHHHHHc-CCCCCeEEEec-----CCEEEEEEcCCCC
Confidence            3899999999987 79999999874     5699999998863

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.98  E-value=1.2e-08  Score=87.96  Aligned_cols=66  Identities=21%  Similarity=0.197  Sum_probs=49.7

Q ss_pred             ceEEEEeCCccEEEEecCCCC------------c--chHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEEEEe
Q 022304           37 LASRYGTDAGSFFVKTNRSIG------------P--SMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYIIME   98 (299)
Q Consensus        37 ~~y~v~~~~g~~vlK~~~~~~------------~--~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~v~e   98 (299)
                      .|++++.++..|+||.+....            .  ....+|...+..|.+. |+|+|+|++++...    ....+++++
T Consensus        37 rvvr~~~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~-GIptP~pVa~~e~~~~~~~~~s~LVte  115 (268)
T PRK15123         37 RTLRFELAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEV-GVDTMTGVAFGERGSNPATRTSFIITE  115 (268)
T ss_pred             eEEEEEECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHc-CCCCCCeeEEEEecCCCccceeEEEEe
Confidence            377888877799999774321            0  1367899999999887 79999998876432    135899999


Q ss_pred             cccCC
Q 022304           99 FIEFG  103 (299)
Q Consensus        99 ~l~G~  103 (299)
                      +++|.
T Consensus       116 ~l~~~  120 (268)
T PRK15123        116 DLAPT  120 (268)
T ss_pred             eCCCC
Confidence            99985

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.97  E-value=3.2e-09  Score=100.83  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=99.8

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCC-----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSI-----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ...++.|..+.||+....+...++|.....           ....+..|.++++.+... ++++|.++..+   ....++
T Consensus       338 ~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~i~~p~~~~~~---~~~~~l  413 (535)
T PRK09605        338 DHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRA-GVPTPVIYDVD---PEEKTI  413 (535)
T ss_pred             cceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhccc-CCCeeEEEEEe---CCCCEE
Confidence            356788888999998766555555543210           013467899999999764 57777766654   346789


Q ss_pred             EEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHH
Q 022304           96 IMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTI  175 (299)
Q Consensus        96 v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (299)
                      +|||++|.++..       .+.     ..                                ..+                
T Consensus       414 v~E~~~g~~L~~-------~l~-----~~--------------------------------~~~----------------  433 (535)
T PRK09605        414 VMEYIGGKDLKD-------VLE-----GN--------------------------------PEL----------------  433 (535)
T ss_pred             EEEecCCCcHHH-------HHH-----HH--------------------------------HHH----------------
Confidence            999999975421       110     00                                000                


Q ss_pred             HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh------hcC---C----
Q 022304          176 YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW------CAG---F----  241 (299)
Q Consensus       176 ~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~------~~~---~----  241 (299)
                         +.++.+.+..+.     ...++|||++|+|||++ ++.+.||||. +..+++..|++..+      +.+   .    
T Consensus       434 ---~~~i~~~L~~lH-----~~giiHrDlkp~NILl~-~~~~~liDFGla~~~~~~~d~a~~l~~~~~~~~~~~~~~~~~  504 (535)
T PRK09605        434 ---VRKVGEIVAKLH-----KAGIVHGDLTTSNFIVR-DDRLYLIDFGLGKYSDLIEDKAVDLHVLKQSLESTHYDFEEL  504 (535)
T ss_pred             ---HHHHHHHHHHHH-----hCCCccCCCChHHEEEE-CCcEEEEeCcccccCCchHhhhhhHHHHHHHhcCCCCCHHHH
Confidence               001111111111     24799999999999995 5568999995 67899999988632      111   1    


Q ss_pred             ChhhHHHhhhhCCCCCCHHH
Q 022304          242 GGSFYNSYFEVMPKQPGFEK  261 (299)
Q Consensus       242 ~~~f~~~Y~~~~~l~~~~~~  261 (299)
                      -+.|+++|... +...++.+
T Consensus       505 ~~~fl~gY~~~-~~~~~~~~  523 (535)
T PRK09605        505 WEAFLEGYRET-EGAEDVLE  523 (535)
T ss_pred             HHHHHHhhccC-ccHHHHHH
Confidence            14789999876 44443333

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.96  E-value=4.2e-09  Score=85.75  Aligned_cols=39  Identities=26%  Similarity=0.431  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc--CCCC
Q 022304           61 FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE--FGSS  105 (299)
Q Consensus        61 ~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~--G~~~  105 (299)
                      .++|++.|..+... |++||+|+...     ..+++|||++  |.++
T Consensus        55 ~~~E~~~L~~l~~~-Gv~vP~p~~~~-----~~~ivME~I~~~G~~~   95 (188)
T PF01163_consen   55 AKKEFRNLKRLYEA-GVPVPKPYDYN-----RNVIVMEYIGEDGVPL   95 (188)
T ss_dssp             HHHHHHHHHHCCCT-T-SS--EEEEE-----TTEEEEE--EETTEEG
T ss_pred             HHHHHHHHHHHHHC-CccCCcEEEEe-----CCEEEEEecCCCccch
Confidence            56899999999876 79999999876     4599999999  6533

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.94  E-value=4.1e-08  Score=78.09  Aligned_cols=165  Identities=20%  Similarity=0.190  Sum_probs=102.7

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCC-C----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRS-I----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~-~----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      +++.+..|....+++....+..+++|.-.+ .          ++.+...|++.|..+... |+++|++++.|.   ....
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~-GI~~P~l~~~D~---~~~~   86 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRAL-GIPAPRLIFIDT---YGGQ   86 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHh-CCCCceEEEEec---CCCe
Confidence            677888888888888776666778875432 1          235567899999988876 899999999984   5889


Q ss_pred             EEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChH
Q 022304           95 IIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDST  174 (299)
Q Consensus        95 ~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (299)
                      +.|||++|...      +-.. -..|.....                      .                       +..
T Consensus        87 i~ME~~~g~~~------vk~~-i~~~~~~~~----------------------~-----------------------d~~  114 (229)
T KOG3087|consen   87 IYMEFIDGAST------VKDF-ILSTMEDES----------------------E-----------------------DEG  114 (229)
T ss_pred             EEEEeccchhH------HHHH-HHHHccCcc----------------------c-----------------------chh
Confidence            99999998522      1111 111111100                      0                       000


Q ss_pred             HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCC---eEEEcccc-c----cCCchhhhhhhh---hc----
Q 022304          175 IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGE---PVILDPAC-Y----YGHNEAEFGMSW---CA----  239 (299)
Q Consensus       175 ~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~---~~iID~~~-~----~g~~~~Dla~~~---~~----  239 (299)
                      ..+...++-+.+..+.     ...+|||||...||++.+++.   +.+|||.. .    --|..+||.++.   ..    
T Consensus       115 ~~~~~~~iG~~igklH-----~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~~~EDKgVDLYVlErA~lsTh~~  189 (229)
T KOG3087|consen  115 LAELARRIGELIGKLH-----DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSRLPEDKGVDLYVLERAVLSTHDK  189 (229)
T ss_pred             HHHHHHHHHHHHHHhh-----hCCeecccccccceEEecCCCcCceEEEeecchhcccCcccccceeeeehHhHhccCcc
Confidence            0111222222222222     358999999999999866543   37899852 2    356778887662   11    


Q ss_pred             --CCChhhHHHhhh
Q 022304          240 --GFGGSFYNSYFE  251 (299)
Q Consensus       240 --~~~~~f~~~Y~~  251 (299)
                        ..-+.|+++|.+
T Consensus       190 ~~~~fe~~~~~Y~~  203 (229)
T KOG3087|consen  190 KALLFEGFLEGYRA  203 (229)
T ss_pred             cHHHHHHHHHHHHh
Confidence              123688999983

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.92  E-value=2.3e-08  Score=81.99  Aligned_cols=71  Identities=23%  Similarity=0.260  Sum_probs=52.8

Q ss_pred             eeeCCccccceEEEEeCCc-cEEEEecCCCCc-----------------------------chHHHHHHHHHHHHhcCCC
Q 022304           28 CPVGGGCINLASRYGTDAG-SFFVKTNRSIGP-----------------------------SMFEGEALGLGAMYETRTI   77 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~-----------------------------~~~~~E~~~l~~L~~~~~~   77 (299)
                      .+++.|..+.||+....+| .+++|+.+....                             ...+.|++.+..+... ++
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~i   81 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEA-GV   81 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            4678888899999987645 899998764210                             1125688888888765 68


Q ss_pred             CCccceeecccCCCceEEEEecccCCC
Q 022304           78 RAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        78 ~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      ++|.++...     ..+++|||++|..
T Consensus        82 ~~p~~~~~~-----~~~lVmE~~~g~~  103 (190)
T cd05145          82 PVPEPILLK-----KNVLVMEFIGDDG  103 (190)
T ss_pred             CCceEEEec-----CCEEEEEEecCCC
Confidence            889988764     2489999999963

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>smart00090 RIO RIO-like kinase

Probab=98.87  E-value=3.3e-08  Score=83.89  Aligned_cols=95  Identities=18%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             ccccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEE--eCCc-cEEEEecCCCCc--------------------
Q 022304            2 TVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYG--TDAG-SFFVKTNRSIGP--------------------   58 (299)
Q Consensus         2 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~--~~~g-~~vlK~~~~~~~--------------------   58 (299)
                      |+.+|+-.++..|++.- ....+.  ++++.|..+.||+..  ..+| .+++|+.+....                    
T Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~i~--~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (237)
T smart00090       11 VLDGRTRLALYSLLNRG-ILSAIG--GCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKI   87 (237)
T ss_pred             ccChHHHHHHHHHHhcC-chHHhC--CeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCC
Confidence            45566666677777543 223333  578889889999997  3344 888998763210                    


Q ss_pred             -------chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           59 -------SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        59 -------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                             ..++.|+..+..|... ++.+|+++...     ..+++||+++|..+
T Consensus        88 ~~~~~~~~~~~~E~~~L~~L~~~-~i~~p~~~~~~-----~~~lV~E~~~g~~L  135 (237)
T smart00090       88 NPRKLVRLWAEKEFRNLQRLYEA-GVPVPKPIAWR-----RNVLVMEFIGGDGL  135 (237)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhc-CCCCCeeeEec-----CceEEEEEecCCcc
Confidence                   1246799999999764 68899998753     34899999999755

>KOG2686 consensus Choline kinase [Cell wall/membrane/envelope biogenesis]

Probab=98.81  E-value=5.2e-08  Score=85.24  Aligned_cols=182  Identities=21%  Similarity=0.108  Sum_probs=113.2

Q ss_pred             eeeeeeeCCccccceEEEEeCCc---------cEEEEecCCCC-cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           24 ITKICPVGGGCINLASRYGTDAG---------SFFVKTNRSIG-PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g---------~~vlK~~~~~~-~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      ..+++.+++|..|.+|.++....         ++.+|+++... ......|...+..|+.+  ---|+++..-+.     
T Consensus        42 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~LlRiyg~~~~~~~~~~Esv~fa~lSer--~lGPkL~G~F~~-----  114 (366)
T KOG2686|consen   42 EQRLEVIPGGGSNLLFVVTSSASTTPIKDEPRKVLLRIYGQGVDFSQRETESVMFAILSER--GLGPKLYGFFSG-----  114 (366)
T ss_pred             hheeeeccCCCcceEEEEecCcccCCcccccceeEEEEecCCccHHHhhhHHHHHHHHhhc--CCCcceeeecCC-----
Confidence            35688889899999999886432         48899998642 23456788888899876  256888876432     


Q ss_pred             EEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHH
Q 022304           94 YIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLA  166 (299)
Q Consensus        94 ~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (299)
                      .-+-+|++.+++.       ..-..+|..++++|....+.   ..        .+     ...|.      ++..++...
T Consensus       115 GR~EefipSRtL~~~~i~~p~~S~~Ia~~~~~~H~~~~p~---~k--------e~-----~~~~~------~~~~wl~~~  172 (366)
T KOG2686|consen  115 GRFEEFIPSRTLTLADIRDPEISKRIAAKLAEYHGIEVPG---PK--------EP-----RSLWE------RYKKWLKGA  172 (366)
T ss_pred             ccHhhhccccccchHhhcchhHHHHHHHHHHHhcCCcCCC---Cc--------cH-----HHHHH------HHHHHHhhh
Confidence            4566788877663       34578999999999988641   10        00     01121      122222211


Q ss_pred             Hhh---------cCCh-HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCC-CeEEEccc-cccCCchhhhh
Q 022304          167 LDQ---------YGDS-TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNG-EPVILDPA-CYYGHNEAEFG  234 (299)
Q Consensus       167 ~~~---------~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~-~~~iID~~-~~~g~~~~Dla  234 (299)
                      .+.         ..+. ...... ...+.++...+..+.+.++||.|+..||||..+.. ...+|||+ +.+.+..||+|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~l~-~e~~~~~~~~e~~~~~vvFcHNDlq~gNiL~~~~t~~Lv~IDfEYasyN~r~fDla  251 (366)
T KOG2686|consen  173 KKIKPTEVSYSCGPDKLEIEDLL-LELSLFRKWSELTKSPVVFCHNDLQYGNILLLNSTKELVLIDFEYASYNPRGFDLA  251 (366)
T ss_pred             hhcCCCccchhcccchhhHHHHH-HHHHHHHHHHhcCCCCeeeecccccccceeeecCCCceeEEeeccccCCchhhhHH
Confidence            111         0110 001111 11122222221113568999999999999997543 47899985 89999999999


Q ss_pred             h
Q 022304          235 M  235 (299)
Q Consensus       235 ~  235 (299)
                      +
T Consensus       252 n  252 (366)
T KOG2686|consen  252 N  252 (366)
T ss_pred             H
Confidence            6

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.81  E-value=3.5e-08  Score=80.89  Aligned_cols=71  Identities=20%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             eeCCccccceEEEEeCCc-cEEEEecCCCC---c---------c-----------------hHHHHHHHHHHHHhcCCCC
Q 022304           29 PVGGGCINLASRYGTDAG-SFFVKTNRSIG---P---------S-----------------MFEGEALGLGAMYETRTIR   78 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~---~---------~-----------------~~~~E~~~l~~L~~~~~~~   78 (299)
                      .++.|..+.||+....+| .+++|+.+...   .         .                 ....|+..+..|... +++
T Consensus         4 ~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~v~   82 (190)
T cd05147           4 CISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTA-GIP   82 (190)
T ss_pred             ccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHC-CCC
Confidence            578888899999987655 88999875321   0         1                 123489999999765 577


Q ss_pred             CccceeecccCCCceEEEEecccCCCC
Q 022304           79 APRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        79 vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +|.++...     ..+++|||++|..+
T Consensus        83 ~p~~~~~~-----~~~iVmE~i~g~~l  104 (190)
T cd05147          83 CPEPILLK-----SHVLVMEFIGDDGW  104 (190)
T ss_pred             CCcEEEec-----CCEEEEEEeCCCCC
Confidence            88777543     33899999999643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=98.81  E-value=1.4e-08  Score=83.75  Aligned_cols=58  Identities=22%  Similarity=0.417  Sum_probs=44.3

Q ss_pred             CCcceeccCCCCCCeeecCCC-----CeEEEccc-cccCCchhhhhhhhhcCCC--------hhhHHHhhhh
Q 022304          195 VEPCLLHGDLWSGNISSDKNG-----EPVILDPA-CYYGHNEAEFGMSWCAGFG--------GSFYNSYFEV  252 (299)
Q Consensus       195 ~~~~liHgDl~~~Nvl~~~~~-----~~~iID~~-~~~g~~~~Dla~~~~~~~~--------~~f~~~Y~~~  252 (299)
                      ...++||||+|++||++..++     .+.+|||+ +.+|+|++|++.+......        +.+++.|.+.
T Consensus       118 ~~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p~~Dl~~~l~~~~~~~~r~~~~~~ll~~Y~~~  189 (196)
T smart00587      118 EFNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAEDLHYFLLTSLSVEIRREHFDELLKFYYET  189 (196)
T ss_pred             CceEEeeCCCCccceeeccCCCCCccceEEEecccCCcCChHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            367999999999999997543     36899995 7899999999976432221        4677777754

subfamily of choline kinases

>PRK14705 glycogen branching enzyme; Provisional

Probab=98.80  E-value=2.7e-07  Score=93.34  Aligned_cols=250  Identities=16%  Similarity=0.063  Sum_probs=137.8

Q ss_pred             eeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc--------CCC-------c
Q 022304           28 CPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--------PTG-------G   92 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--------~~~-------~   92 (299)
                      ..+++-++|....+...+.++|+|+++.-... ..=|+++.++|.+.+--.||.++..-..        ..+       .
T Consensus       150 r~l~~EQSNTSvi~gd~~~~~ilKlfRrl~~G-~NPdvE~~r~Lteag~~~vP~llG~ve~~~~~~~~~~~~~~~~~~~t  228 (1224)
T PRK14705        150 KVLSGEQSNTSVIVDDGDSAAIVKFFRVLSAG-KNPEVELGAALTAAGTSEVPATLGWVTGEWDGPASNAGATARAVTGE  228 (1224)
T ss_pred             cccccccCceEEEECCCCccEEEEEeeecCCC-CCccHHHHHHHhhCCCccCCCccEEEEEeecccccccCCccccCcee
Confidence            44555567776666432238999999852211 1235777888987543469999876322        111       2


Q ss_pred             eEEEEecccCCCCC---------------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHh
Q 022304           93 SYIIMEFIEFGSSR---------------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEH  157 (299)
Q Consensus        93 ~~~v~e~l~G~~~~---------------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (299)
                      -.++.+|+++..-.               ..++.||+.+|.||.+.+..  ++-  +.+.        ....+   .. .
T Consensus       229 La~lq~fv~n~gDgW~~tl~~l~r~~~f~~~a~~LG~rtAemH~aLA~~--~~~--~~f~--------~~~~~---~~-~  292 (1224)
T PRK14705        229 LAVAHEFLAGGLDAWRLAVDAAASGKDFTAEARALGAATATVHRRLAET--LGT--HDGQ--------EQGPD---IA-A  292 (1224)
T ss_pred             HHHHHHhhcCCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcC--CCC--cccc--------cCHHH---HH-H
Confidence            36778999875420               23678999999999988742  111  1000        00000   00 0


Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCC-----CeEEEccc--c------
Q 022304          158 RLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNG-----EPVILDPA--C------  224 (299)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~-----~~~iID~~--~------  224 (299)
                      .+...++..... .++.+...-.++.+++..+.........-||||||.|.||+.++.     ...||||+  +      
T Consensus       293 ~~~~rL~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~RIHGD~HLGQVL~t~~D~~~~~~~~IIDFEGEP~RpL~E  371 (1224)
T PRK14705        293 GVARRVRGSWAE-AGPAVGPYDHALDELLSALDGRNAGQLQRIHGDLHLGQILQVPGAEGQPERWAILDFEGEPLRPIDE  371 (1224)
T ss_pred             HHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHhccCccceEEEecccccccEEEecCCCCccCCEEEEecCCCCCCChhh
Confidence            111112111111 122222222233333333322112356889999999999997432     26899974  2      


Q ss_pred             --ccCCchhhhh-hh-hh--c------C---------C----ChhhHHHhhhhCC-CCCCHHHHHHHHHHHHHH---HHH
Q 022304          225 --YYGHNEAEFG-MS-WC--A------G---------F----GGSFYNSYFEVMP-KQPGFEKRRDLYMLYHYL---NHY  275 (299)
Q Consensus       225 --~~g~~~~Dla-~~-~~--~------~---------~----~~~f~~~Y~~~~~-l~~~~~~r~~~~~l~~~l---~~~  275 (299)
                        .--.|..|+| |+ ++  .      .         |    ..+|+++|.+..+ ..+.....+..|.+-.++   ..-
T Consensus       372 RR~k~sPLRDVAGMLRSFdYAa~~~l~~~~~~~~a~~W~~~~~~aFL~gY~~~~~g~~~~~~~LL~aflLeKAvYEv~YE  451 (1224)
T PRK14705        372 RNSPDVPLRDVTGMLRSFDYAAGAATRENEGAHVPESWVDDCAAAFLAGYSEVTPGTIDRRSPLFVALWLDKALYEVVYE  451 (1224)
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence              2367899998 44 22  0      0         1    1369999998763 223222334455544443   222


Q ss_pred             HhhCcccHHHHHHHHHHHHH
Q 022304          276 NLFGSGYRSSALSIIDDYLR  295 (299)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~  295 (299)
                      ....++|.....+.+.+++.
T Consensus       452 ~~nRP~Wv~IPL~gi~rll~  471 (1224)
T PRK14705        452 LRNRPDWLSIPVNASRRLLD  471 (1224)
T ss_pred             HHcCCcchHhHHHHHHHHHh
Confidence            33468999999999988874

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.80  E-value=8.6e-08  Score=80.04  Aligned_cols=142  Identities=25%  Similarity=0.278  Sum_probs=91.1

Q ss_pred             ceeee-eeeCCccccceEEEEeCCc-cEEEEecCCCC---------------------------cchHHHHHHHHHHHHh
Q 022304           23 HITKI-CPVGGGCINLASRYGTDAG-SFFVKTNRSIG---------------------------PSMFEGEALGLGAMYE   73 (299)
Q Consensus        23 ~~~~~-~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~---------------------------~~~~~~E~~~l~~L~~   73 (299)
                      .+..+ -.++.|-...||...+.++ .+.+|++...+                           ....++|+.-|..+.+
T Consensus        48 ~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~e  127 (268)
T COG1718          48 VITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYE  127 (268)
T ss_pred             ceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44443 4677888889999887655 77889885310                           0234689999998988


Q ss_pred             cCCCCCccceeecccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHH
Q 022304           74 TRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEF  153 (299)
Q Consensus        74 ~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (299)
                      . |++||+|+..-     ...++|||+.....                 ++         |.... .+    . ..    
T Consensus       128 A-GVrvP~Pi~~~-----~nVLvMEfIg~~g~-----------------pA---------P~LkD-v~----~-e~----  165 (268)
T COG1718         128 A-GVRVPEPIAFR-----NNVLVMEFIGDDGL-----------------PA---------PRLKD-VP----L-EL----  165 (268)
T ss_pred             c-CCCCCCceeec-----CCeEEEEeccCCCC-----------------CC---------CCccc-CC----c-Cc----
Confidence            6 79999999886     34999999977521                 11         10000 00    0 00    


Q ss_pred             HHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-ccc-cCCch
Q 022304          154 YAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-ACY-YGHNE  230 (299)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~~-~g~~~  230 (299)
                            +             ......+.+++.+..++.    ...|+||||..-|||+. ++.++|||+ .+. ..+|.
T Consensus       166 ------~-------------e~~~~~~~~v~~~~~l~~----~a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~hp~  220 (268)
T COG1718         166 ------E-------------EAEGLYEDVVEYMRRLYK----EAGLVHGDLSEYNILVH-DGEPYIIDVSQAVTIDHPN  220 (268)
T ss_pred             ------h-------------hHHHHHHHHHHHHHHHHH----hcCcccccchhhheEEE-CCeEEEEECccccccCCCc
Confidence                  0             001122334444444443    47899999999999998 556999997 564 56654

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.77  E-value=2.2e-07  Score=76.71  Aligned_cols=93  Identities=14%  Similarity=0.032  Sum_probs=54.1

Q ss_pred             HHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCc------------chHHHHHHHHHHHHhcCCCC
Q 022304           11 IREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGP------------SMFEGEALGLGAMYETRTIR   78 (299)
Q Consensus        11 i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~------------~~~~~E~~~l~~L~~~~~~~   78 (299)
                      -.+++... ...+..-++-+.+..-|.|.+|+++++.||+|.+++..+            ....++...+..+.+. |+.
T Consensus        21 y~~l~~~i-~~~~~~~~kv~k~~~r~~ValIei~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~-g~~   98 (229)
T PF06176_consen   21 YLELGEKI-LDNNYKIIKVFKNTKRNYVALIEIDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNE-GFT   98 (229)
T ss_pred             HHHHHHHH-HhCCceEEEeecCCCccEEEEEEECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHc-Ccc
Confidence            33444444 333444444555555678999999999999999986321            1223444444455444 565


Q ss_pred             Cccce-eecccC----CCceEEEEecccCCCC
Q 022304           79 APRPF-KVGALP----TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        79 vP~~~-~~~~~~----~~~~~~v~e~l~G~~~  105 (299)
                      .|..+ ....-.    ....+++|||++|.++
T Consensus        99 ~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l  130 (229)
T PF06176_consen   99 EPADPYLAAEKKIFRYTSSYVLLMEYIEGVEL  130 (229)
T ss_pred             ccccceeeeeeeeccceeEEEEEEEEecCeec
Confidence            55442 222111    2345689999999866

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.75  E-value=6.3e-08  Score=80.45  Aligned_cols=119  Identities=20%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             cchHHHHHHHHHHHHhcCCCCCccceeecccCC---CceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 022304           58 PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT---GGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVD  134 (299)
Q Consensus        58 ~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~---~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~  134 (299)
                      .....+|...+..|.+. |+|+|+|++++....   ...++++++++|..      .+...+...+....          
T Consensus        55 ~~ra~~E~~~~~~L~~~-Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~------~L~~~~~~~~~~~~----------  117 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREA-GIPTPEPVAYGERRKGGGYRSYLITEALPGAQ------DLRDLLQQWEQLDP----------  117 (206)
T ss_pred             chHHHHHHHHHHHHHHc-CCCCCcEEEEEEEcCCCceeEEEEEEeCCCcc------cHHHHHHhhcccch----------
Confidence            34578899999999986 899999999876532   24689999999842      23333333322110          


Q ss_pred             CcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC
Q 022304          135 NTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN  214 (299)
Q Consensus       135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~  214 (299)
                                    ...        ..             +...+.+++.+   +.     ..+++|||++++|||++++
T Consensus       118 --------------~~~--------~~-------------ll~~l~~~i~~---lH-----~~gi~H~Dl~~~NILv~~~  154 (206)
T PF06293_consen  118 --------------SQR--------RE-------------LLRALARLIAK---LH-----DAGIYHGDLNPSNILVDPD  154 (206)
T ss_pred             --------------hhH--------HH-------------HHHHHHHHHHH---HH-----HCcCCCCCCCcccEEEeCC
Confidence                          000        00             01112222222   22     4699999999999999877


Q ss_pred             C---CeEEEccc-cccCC-----chhhhhhh
Q 022304          215 G---EPVILDPA-CYYGH-----NEAEFGMS  236 (299)
Q Consensus       215 ~---~~~iID~~-~~~g~-----~~~Dla~~  236 (299)
                      +   ...+||++ +....     ...||+.+
T Consensus       155 ~~~~~~~lIDld~~~~~~~~~~~~~~dL~~L  185 (206)
T PF06293_consen  155 DGQYRFYLIDLDRMRFRPSSRRWRAKDLARL  185 (206)
T ss_pred             CCceeEEEEcchhceeCCCChHHHHHhHHHH
Confidence            5   47899986 33333     35666655

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.72  E-value=1.7e-07  Score=77.37  Aligned_cols=73  Identities=21%  Similarity=0.163  Sum_probs=52.8

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCCC-------------------------cchHHHHHHHHHHHHhcCCCCCc
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSIG-------------------------PSMFEGEALGLGAMYETRTIRAP   80 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~-------------------------~~~~~~E~~~l~~L~~~~~~~vP   80 (299)
                      .++++.|..+.+|+....+| .+.+|+.+...                         ......|...+..+... ++++|
T Consensus        20 ~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~i~v~   98 (198)
T cd05144          20 GNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE-GFPVP   98 (198)
T ss_pred             CCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHc-CCCCC
Confidence            36788888899999987555 88999754211                         01245688888888664 47889


Q ss_pred             cceeecccCCCceEEEEecccCCCC
Q 022304           81 RPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        81 ~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      .++..+     ..+++|||++|.++
T Consensus        99 ~~~~~~-----~~~lv~e~~~g~~L  118 (198)
T cd05144          99 KPIDWN-----RHAVVMEYIDGVEL  118 (198)
T ss_pred             ceeecC-----CceEEEEEeCCcch
Confidence            888643     45999999999654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.70  E-value=5.6e-08  Score=91.24  Aligned_cols=99  Identities=15%  Similarity=0.070  Sum_probs=69.1

Q ss_pred             cccCCcchHHHHHHhcCCCccee------eeeeeCCccccceEEEEeCC-c-cEEEEecCCCCc----------------
Q 022304            3 VAALSDDPIREWILSEGKATHIT------KICPVGGGCINLASRYGTDA-G-SFFVKTNRSIGP----------------   58 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~~----------------   58 (299)
                      |..++.+++.+.+.+. +|.++.      +.+|++.|....||+.+..+ | .++||+-++.-.                
T Consensus        95 vpp~~~~~~~~~ie~e-lG~~~~~~F~~fd~~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~  173 (537)
T PRK04750         95 VPPFDGALARAIIEKA-LGGPVEEWFDDFDIKPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARW  173 (537)
T ss_pred             CCCCCHHHHHHHHHHH-hCCCHHHHHHhcChhhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHH
Confidence            5678888999999877 443222      24789999899999999865 5 899998865310                


Q ss_pred             ---------------------------chHHHHHHHHHHHHh----cCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           59 ---------------------------SMFEGEALGLGAMYE----TRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        59 ---------------------------~~~~~E~~~l~~L~~----~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                                                 -.+..|++.+..+++    ...+.||++|..-   .+..+++|||++|.++
T Consensus       174 l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~---st~~VLvmE~i~G~~l  248 (537)
T PRK04750        174 VERLLPDGRRLKPREVVAEFEKTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDY---CSETVMVMERMYGIPV  248 (537)
T ss_pred             HHHhCcccccCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCCCeecceeeccc---CCCceEEEeeecCccH
Confidence                                       113445555555543    2347899999754   2578999999999865

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=98.69  E-value=2.4e-08  Score=86.21  Aligned_cols=137  Identities=22%  Similarity=0.286  Sum_probs=93.8

Q ss_pred             eeee-eeeCCccccceEEEEeCCc-cEEEEecCCC-------------------------CcchHHHHHHHHHHHHhcCC
Q 022304           24 ITKI-CPVGGGCINLASRYGTDAG-SFFVKTNRSI-------------------------GPSMFEGEALGLGAMYETRT   76 (299)
Q Consensus        24 ~~~~-~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~-------------------------~~~~~~~E~~~l~~L~~~~~   76 (299)
                      +.++ ..+|-|-.+.+|.+...+| .+++|+.+-.                         ++-...+|.++++.|.++ +
T Consensus        93 v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~-g  171 (465)
T KOG2268|consen   93 VESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYER-G  171 (465)
T ss_pred             hhhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHc-C
Confidence            3344 5677888899999988766 8899977421                         112235799999999998 7


Q ss_pred             CCCccceeecccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q 022304           77 IRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE  156 (299)
Q Consensus        77 ~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (299)
                      +|||+|+.++     +++++|+.++|-|+.           ++|.+..+                         .     
T Consensus       172 fpVPkpiD~~-----RH~Vvmelv~g~Pl~-----------~v~~v~d~-------------------------~-----  205 (465)
T KOG2268|consen  172 FPVPKPIDHN-----RHCVVMELVDGYPLR-----------QVRHVEDP-------------------------P-----  205 (465)
T ss_pred             CCCCCccccc-----ceeeHHHhhccccee-----------eeeecCCh-------------------------H-----
Confidence            9999999886     569999999998663           22322211                         0     


Q ss_pred             hhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-cc-ccCCchhh
Q 022304          157 HRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-AC-YYGHNEAE  232 (299)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~-~~g~~~~D  232 (299)
                                       .+.+.+..++-++.        ..++|||||.-=|||+++++.+.+||| .+ ...+|-.+
T Consensus       206 -----------------~ly~~lm~~Iv~la--------~~GlIHgDFNEFNimv~dd~~i~vIDFPQmvS~sh~nA~  258 (465)
T KOG2268|consen  206 -----------------TLYDDLMGLIVRLA--------NHGLIHGDFNEFNIMVKDDDKIVVIDFPQMVSTSHPNAE  258 (465)
T ss_pred             -----------------HHHHHHHHHHHHHH--------HcCceecccchheeEEecCCCEEEeechHhhccCCCccc
Confidence                             01112222222221        369999999999999987777999995 55 35555443

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.68  E-value=2.2e-07  Score=76.51  Aligned_cols=72  Identities=14%  Similarity=0.077  Sum_probs=51.9

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCC-------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIG-------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.++.|..+.||.+..++.+++.|-.....       ...+++|+++|+.|...  ..+|+++...     ..+++|+|
T Consensus         7 ~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~--~~vP~ll~~~-----~~~lvmey   79 (218)
T PRK12274          7 NEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGL--PRTPRLLHWD-----GRHLDRSY   79 (218)
T ss_pred             ceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCC--CCCCEEEEEc-----CEEEEEee
Confidence            4567777889999888766687755443221       12467899999999653  5689998863     46999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        80 I~G~~L   85 (218)
T PRK12274         80 LAGAAM   85 (218)
T ss_pred             ecCccH
Confidence            998743

>TIGR02569 TIGR02569_actnb conserved hypothetical protein TIGR02569, Actinobacterial

Probab=98.66  E-value=1.4e-06  Score=72.77  Aligned_cols=219  Identities=12%  Similarity=0.149  Sum_probs=125.3

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEecccCCC
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEFIEFGS  104 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~l~G~~  104 (299)
                      +-+++++|+ ..-||+    |..|+|......+.  .--..+.+.|.- .++.+.+|+...+.. .-..|-.-+|++|.+
T Consensus        17 ~p~~Lg~~w-~~gwr~----G~vVls~v~~~~~A--aWsAkvre~L~~-~GvRvaRPvrstDGRyVv~GWrA~~fv~G~~   88 (272)
T TIGR02569        17 PPIQLGAAW-DGGWRV----GNVVFSMVADPARS--AWSARVRETLFP-DGVRVVRPVRSTDGRYVVAGWRADTFVAGTP   88 (272)
T ss_pred             CcccCCCCC-CCcEEe----ccEEEeccCCchhh--hhhHHhhhhccC-CCeeEecceecCCCCeEecceeeccccCCCc
Confidence            344576554 566898    78899875432111  122333344443 378889999775432 234577889999984


Q ss_pred             CCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHH-HhhhHHHHHH------HHhhcCChHHHH
Q 022304          105 SRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYA-EHRLGYQLKL------ALDQYGDSTIYQ  177 (299)
Q Consensus       105 ~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~  177 (299)
                       ...+.++..+--+||.....     .+.|.+..      .|..  .+.|. ..+.......      ....-......+
T Consensus        89 -~~R~DEvv~aalrlh~Ala~-----~~~P~fl~------~~~~--~d~fa~ADraAW~e~p~~~~~~~~~~~~~~~~~~  154 (272)
T TIGR02569        89 -EPRVDETVVAALRLHEALGD-----LERPGPAA------PWAE--IDVFVAADRAAWEERPLQSVPPGVPTAPPAADPQ  154 (272)
T ss_pred             -CcchHHHHHHHHHHHHHHhc-----CCCCcccc------ccch--hhHHHHHHHHHhhcccccccccccccccccchhh
Confidence             46778888888899998863     22222211      1211  12221 2222110000      000000001122


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhhhhh----hh-cCCChhhHHHhhhh
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS----WC-AGFGGSFYNSYFEV  252 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla~~----~~-~~~~~~f~~~Y~~~  252 (299)
                      ...+++.++.++......+..++|||+ .+|+||+++..++|||.-..+-+..|=-+..    +. ++.++++++.+...
T Consensus       155 ~~~~l~~~l~~lrrpv~~p~QlvHgDl-~gt~lF~g~~~P~itDi~pywRP~~waaAvvvVDal~wg~ad~~ll~rw~h~  233 (272)
T TIGR02569       155 RSIDLINQIAGLLKPIKSPNQVVHADM-YATTLYAGTQPPGVTDLVPVWRPAGWTAAVAIVDALLWGAVDEGIIERFSHL  233 (272)
T ss_pred             HHHHHHHHHHHHhcccCCCcceeeeec-ccceeecCCCCCceeecccccCcchhhhHHHHHHHHHhcCCCHHHHHHhccC
Confidence            233455555555555457889999999 7899999887789999876777777766653    22 67788999996543


Q ss_pred             CCCCCCHHHHHHHHHH
Q 022304          253 MPKQPGFEKRRDLYML  268 (299)
Q Consensus       253 ~~l~~~~~~r~~~~~l  268 (299)
                       |--+.+..|..+|++
T Consensus       234 -p~~~QlllRAllfRl  248 (272)
T TIGR02569       234 -PEWPQLLLRALMFRL  248 (272)
T ss_pred             -cchHHHHHHHHHHHH
Confidence             322334556666644

This protein family is found, so far, only in Actinobacteria, including as least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica, always in a single copy per genome. The function is unknown.

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.62  E-value=5.6e-07  Score=73.28  Aligned_cols=70  Identities=26%  Similarity=0.325  Sum_probs=50.6

Q ss_pred             eeCCccccceEEEEeCCc-cEEEEecCCCC------cch---------------------HHHHHHHHHHHHhcCCCCCc
Q 022304           29 PVGGGCINLASRYGTDAG-SFFVKTNRSIG------PSM---------------------FEGEALGLGAMYETRTIRAP   80 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~------~~~---------------------~~~E~~~l~~L~~~~~~~vP   80 (299)
                      .++.|..+.+|++...++ .+++|+..+..      ...                     ...|...+..+... ++.+|
T Consensus         4 ~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~-~~~~~   82 (187)
T cd05119           4 PIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEA-GVPVP   82 (187)
T ss_pred             ccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHc-CCCCC
Confidence            577788889999887644 89999865421      011                     14577777777765 68899


Q ss_pred             cceeecccCCCceEEEEecccCCC
Q 022304           81 RPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        81 ~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      +++...     ..+++|+|++|..
T Consensus        83 ~~~~~~-----~~~lv~e~~~g~~  101 (187)
T cd05119          83 KPIDLN-----RHVLVMEFIGGDG  101 (187)
T ss_pred             ceEecC-----CCEEEEEEeCCCC
Confidence            999764     3599999999964

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.61  E-value=1.1e-07  Score=88.66  Aligned_cols=100  Identities=19%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             cccCCcchHHHHHHhcCCCccee----e--eeeeCCccccceEEEEeCCc-cEEEEecCCCCc-----------------
Q 022304            3 VAALSDDPIREWILSEGKATHIT----K--ICPVGGGCINLASRYGTDAG-SFFVKTNRSIGP-----------------   58 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~~~~~~~~----~--~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~-----------------   58 (299)
                      |..+..+++.+.+.+. +|..+.    +  -+|++.+...+||+.+..+| .++||+-+++-+                 
T Consensus       101 vpp~~~~~~~~iie~e-LG~~iee~F~eF~~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~  179 (517)
T COG0661         101 VPPFPFEEAERIIEEE-LGRPIEELFSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLI  179 (517)
T ss_pred             CCCCCHHHHHHHHHHH-hCCCHHHHHHHcCCCchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHH
Confidence            5677888999999888 554443    2  36777777889999999876 899998876300                 


Q ss_pred             --------------------------chHHHHHHHHHHHHhc----CCCCCccceeecccCCCceEEEEecccCCCCC
Q 022304           59 --------------------------SMFEGEALGLGAMYET----RTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR  106 (299)
Q Consensus        59 --------------------------~~~~~E~~~l~~L~~~----~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~  106 (299)
                                                -.+..|+..++.+++.    ..+.||+|+..-   .+...++|||++|.+..
T Consensus       180 ~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~---t~~~VLtmE~i~Gi~i~  254 (517)
T COG0661         180 KRLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEY---TTRRVLTMEWIDGIKIS  254 (517)
T ss_pred             HHcCCccccCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhc---cCCcEEEEEeeCCEecc
Confidence                                      1134666666666542    457899999754   25779999999998663

>COG3570 StrB Streptomycin 6-kinase [Defense mechanisms]

Probab=98.56  E-value=5.5e-07  Score=72.73  Aligned_cols=165  Identities=21%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             cccceEEEEeCCccEEEE----ecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCCC---
Q 022304           34 CINLASRYGTDAGSFFVK----TNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR---  106 (299)
Q Consensus        34 ~~n~~y~v~~~~g~~vlK----~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~---  106 (299)
                      .++.+|.|+..+|+-++|    +....  +. .+=..++.|..   |.-+.+++..+     ...++||+..|+.+.   
T Consensus        24 ~ssrllpv~~~ggsa~~~amlk~~~~~--ee-rrG~~ll~ww~---G~Gaarvla~d-----~~alLlEra~~~rsl~~l   92 (274)
T COG3570          24 HSSRLLPVRRRGGSAIAKAMLKKADLE--EE-RRGADLLAWWD---GIGAARVLAQD-----DNALLLERAGGERSLDVL   92 (274)
T ss_pred             cccceEEEEecCchhHHHHHhhhccch--Hh-hccchhhhhhh---cCCcchhhccC-----ccHHHHHhccccchHHHH
Confidence            457788898877654443    33221  10 12234556665   45567788775     448999999987651   


Q ss_pred             ------Cc-HHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          107 ------GN-QSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       107 ------~~-~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                            +. -+-+.+.++++|+-..+++ .+        ..     +...|.+.+-        .....   +....-..
T Consensus        93 ~~~G~Dd~aTrIac~a~~rlh~Prp~pp-p~--------L~-----pL~~wf~sLf--------~~a~~---d~~i~v~a  147 (274)
T COG3570          93 VRDGNDDAATRIACEALARLHAPRPSPP-PE--------LL-----PLERWFESLF--------RKARQ---DGSIYVEA  147 (274)
T ss_pred             HHhCCchHHHHHHHHHHHHhhCCCCCCC-cc--------cc-----cHHHHHHHHH--------HHHhh---cCCcchhH
Confidence                  12 2456788999998743211 11        11     1123322111        11111   10011111


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhhhhhhh
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWC  238 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla~~~~  238 (299)
                      .++.+   .++.. +...+.+|||+|.+|||=.+.+.-.+||+...+|++.||.+.+.+
T Consensus       148 A~~A~---~LL~~-p~di~pLHGDlHH~Nild~~~rGWlvIDPkgl~Gdrg~D~ANlf~  202 (274)
T COG3570         148 ARAAQ---TLLDT-PRDIRPLHGDLHHGNILDGDRRGWLVIDPKGLIGDRGFDYANLFC  202 (274)
T ss_pred             HHHHH---HHhcC-ccccccCcccccccccccCCcCceEEEccccccCccccchHhhhc
Confidence            12222   23333 467789999999999996554335689999999999999998754

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=98.49  E-value=7.4e-07  Score=81.29  Aligned_cols=133  Identities=20%  Similarity=0.245  Sum_probs=88.5

Q ss_pred             eeeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +.+|.|..+.|++.+..+  ..|.+|+-...      --..+.+|-.+|..|+.+.  -+-+++.+-.+ +..-|+|+++
T Consensus        79 ~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hP--givkLy~TFQD-~~sLYFvLe~  155 (604)
T KOG0592|consen   79 KILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHP--GIVKLYFTFQD-EESLYFVLEY  155 (604)
T ss_pred             heeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCC--CeEEEEEEeec-ccceEEEEEe
Confidence            567899999999987632  37888876431      1245678999999998652  34566654332 5688999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          100 IEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       100 l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                      .+++          +.|.-|++...    |                 .+.|..||..                       
T Consensus       156 A~nG----------dll~~i~K~Gs----f-----------------de~caR~YAA-----------------------  181 (604)
T KOG0592|consen  156 APNG----------DLLDLIKKYGS----F-----------------DETCARFYAA-----------------------  181 (604)
T ss_pred             cCCC----------cHHHHHHHhCc----c-----------------hHHHHHHHHH-----------------------
Confidence            9986          33444555442    1                 1234444432                       


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                       +++..+. ++.    ..++||+|++|+|||+|+|+.+.|-||.
T Consensus       182 -eIldAle-ylH----~~GIIHRDlKPENILLd~dmhikITDFG  219 (604)
T KOG0592|consen  182 -EILDALE-YLH----SNGIIHRDLKPENILLDKDGHIKITDFG  219 (604)
T ss_pred             -HHHHHHH-HHH----hcCceeccCChhheeEcCCCcEEEeecc
Confidence             1222222 222    4699999999999999999988999975

>COG2187 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.49  E-value=4.3e-07  Score=76.75  Aligned_cols=95  Identities=21%  Similarity=0.218  Sum_probs=67.5

Q ss_pred             HHHHHHHhccccCC--CCCcceeccCCCCCCeeecCCCCeEEEc---c-cc-ccCCchhhhhhhhh----cCCC---hhh
Q 022304          180 HRLMKNLAPLFEGV--NVEPCLLHGDLWSGNISSDKNGEPVILD---P-AC-YYGHNEAEFGMSWC----AGFG---GSF  245 (299)
Q Consensus       180 ~~~~~~l~~~l~~~--~~~~~liHgDl~~~Nvl~~~~~~~~iID---~-~~-~~g~~~~Dla~~~~----~~~~---~~f  245 (299)
                      ++..++...++...  ..-.+=||||+|.+||.+- ++++.++|   | +. .+.|..+|+|++..    .+.+   ..|
T Consensus       190 ~~f~e~~~~lf~~R~~~g~IRecHGDLhl~ni~l~-dg~~~LFDCIEFNd~fr~iDv~~D~AFl~MDLe~~gr~dla~~~  268 (337)
T COG2187         190 EEFLERHGPLFDRRIAEGFIRECHGDLHLRNICLW-DGEPALFDCIEFNDPFRFIDVLYDLAFLAMDLEFRGRKDLARRF  268 (337)
T ss_pred             HHHHHhhhHHHHHHHhcCCceecccchhhcceeee-cCcceEEEEeecCCcchHHHHHHHHHHHHhhHhhcCChHHHHHH
Confidence            34444444454432  2345789999999999985 45699999   5 35 49999999998632    3333   589


Q ss_pred             HHHhhhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 022304          246 YNSYFEVMPKQPGFEKRRDLYMLYHYLNHYN  276 (299)
Q Consensus       246 ~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~  276 (299)
                      ++.|.+..+= .+..+-+++|.-+++.+++-
T Consensus       269 ln~Yl~~tgD-~~gl~lLpfyla~rA~VRak  298 (337)
T COG2187         269 LNTYLEETGD-WDGLELLPFYLAYRAYVRAK  298 (337)
T ss_pred             HHHHHHHhCC-ccHHHHhHHHHHHHHHHHHh
Confidence            9999988642 33367899999988888874

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.46  E-value=2.3e-06  Score=69.85  Aligned_cols=71  Identities=17%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             eCCccccceEEEEeC--CccEEEEecCCCCc----chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           30 VGGGCINLASRYGTD--AGSFFVKTNRSIGP----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~--~g~~vlK~~~~~~~----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++.|..+.+|++...  +..+++|+......    ..+.+|...++.+..   ..+++++..... .+..++++++++|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~---~~i~~~~~~~~~-~~~~~~~~e~~~~~   76 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNH---PNIVKLYGVFED-ENHLYLVMEYCEGG   76 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCC---CCeeeEeeeeec-CCeEEEEEecCCCC
Confidence            467778899999986  44899999986432    467888888888754   466777766544 46889999999985


Q ss_pred             C
Q 022304          104 S  104 (299)
Q Consensus       104 ~  104 (299)
                      +
T Consensus        77 ~   77 (215)
T cd00180          77 S   77 (215)
T ss_pred             c
Confidence            3

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=98.42  E-value=2.2e-06  Score=78.06  Aligned_cols=138  Identities=16%  Similarity=0.203  Sum_probs=89.0

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ....+..||.|....||.++-. .| -|.+|+-...      +-..+.+|.++|.. ..  +--|.++|..-.+ ...-|
T Consensus       142 DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~-~d--s~~vVKLyYsFQD-~~~LY  217 (550)
T KOG0605|consen  142 DFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAE-VD--SPWVVKLYYSFQD-KEYLY  217 (550)
T ss_pred             cchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhh-cC--CCcEEEEEEEecC-CCeeE
Confidence            3445788999999999999864 34 4666876542      22446778877755 22  3456667654332 46889


Q ss_pred             EEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChH
Q 022304           95 IIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDST  174 (299)
Q Consensus        95 ~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (299)
                      ++|||++|++       ++..|-+.-                        ...++|..||..+.+.              
T Consensus       218 LiMEylPGGD-------~mTLL~~~~------------------------~L~e~~arfYiaE~vl--------------  252 (550)
T KOG0605|consen  218 LIMEYLPGGD-------MMTLLMRKD------------------------TLTEDWARFYIAETVL--------------  252 (550)
T ss_pred             EEEEecCCcc-------HHHHHHhcC------------------------cCchHHHHHHHHHHHH--------------
Confidence            9999999983       344443321                        1124677777542111              


Q ss_pred             HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcccc
Q 022304          175 IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPAC  224 (299)
Q Consensus       175 ~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~  224 (299)
                         .       +..+.     ..+.||.|++|+|+|+|..|.+-+-||..
T Consensus       253 ---A-------I~~iH-----~~gyIHRDIKPdNlLiD~~GHiKLSDFGL  287 (550)
T KOG0605|consen  253 ---A-------IESIH-----QLGYIHRDIKPDNLLIDAKGHIKLSDFGL  287 (550)
T ss_pred             ---H-------HHHHH-----HcCcccccCChhheeecCCCCEeeccccc
Confidence               1       11111     36899999999999999999888888753

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.30  E-value=5.2e-06  Score=74.65  Aligned_cols=73  Identities=12%  Similarity=0.030  Sum_probs=50.1

Q ss_pred             eeeeeCCccccceEEEEeC--Cc-cEEEEecCCC--------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD--AG-SFFVKTNRSI--------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g-~~vlK~~~~~--------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -...+|.|..+.||+....  ++ .+.+|.....        ....+.+|+++++.|...  -.+|.++..     +..|
T Consensus        22 ~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~--~iv~~l~~~-----~~~~   94 (365)
T PRK09188         22 ETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGI--GVVPQLLAT-----GKDG   94 (365)
T ss_pred             EccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCC--CCCcEEEEc-----CCcE
Confidence            3466888989999998653  34 4467764321        134578999999999753  235666543     3579


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|..+
T Consensus        95 LVmE~~~G~~L  105 (365)
T PRK09188         95 LVRGWTEGVPL  105 (365)
T ss_pred             EEEEccCCCCH
Confidence            99999999644

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=98.19  E-value=2.5e-05  Score=75.11  Aligned_cols=174  Identities=11%  Similarity=0.061  Sum_probs=101.8

Q ss_pred             Ccceeeeee-eCCccccceEEEEeCCc--cEEEEec-CCC--CcchHHHHHHHHHHHHhcCCCCCccceeecc-cC----
Q 022304           21 ATHITKICP-VGGGCINLASRYGTDAG--SFFVKTN-RSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGA-LP----   89 (299)
Q Consensus        21 ~~~~~~~~~-~~~G~~n~~y~v~~~~g--~~vlK~~-~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~-~~----   89 (299)
                      |..-+.|++ |..|....||.+.+..+  +|++|.- ..+  ....+.+|+++++.|+.+     |.++.+.+ ..    
T Consensus        35 g~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh-----~nIV~yidss~~~~~  109 (738)
T KOG1989|consen   35 GSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGH-----KNIVSYIDSSAINRS  109 (738)
T ss_pred             CCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCC-----CceeeEecccccccc
Confidence            444455655 46676789999998654  7888744 333  245678999999999876     55554332 11    


Q ss_pred             -CC---ceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHH
Q 022304           90 -TG---GSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL  165 (299)
Q Consensus        90 -~~---~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                       .+   ...++|||+.|.       .|.+.+.+.=+....                      .        .   +    
T Consensus       110 ~~~~~~EvllLmEyC~gg-------~Lvd~mn~Rlq~~lt----------------------e--------~---e----  145 (738)
T KOG1989|consen  110 SNNGVWEVLLLMEYCKGG-------SLVDFMNTRLQTRLT----------------------E--------D---E----  145 (738)
T ss_pred             CCCceeEEEeehhhccCC-------cHHHHHHHHHhccCC----------------------h--------H---H----
Confidence             12   357899999976       334444432111110                      0        0   0    


Q ss_pred             HHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cc--cCC--chhhhhhhhh--
Q 022304          166 ALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CY--YGH--NEAEFGMSWC--  238 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~--~g~--~~~Dla~~~~--  238 (299)
                               ....+..+.+.+..+.   ..++.|||+||+..|||++.++...++||. ++  +-.  -..++.++..  
T Consensus       146 ---------VLkIf~dv~~AVa~mH---~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI  213 (738)
T KOG1989|consen  146 ---------VLKIFYDVCEAVAAMH---YLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEI  213 (738)
T ss_pred             ---------HHHHHHHHHHHHHHHh---cCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHH
Confidence                     0112222233333222   257899999999999999988888999985 32  222  3444444421  


Q ss_pred             -----cC-CChhhHHHhhhhCCCC
Q 022304          239 -----AG-FGGSFYNSYFEVMPKQ  256 (299)
Q Consensus       239 -----~~-~~~~f~~~Y~~~~~l~  256 (299)
                           .. -..+-++-|.-. |++
T Consensus       214 ~k~TTp~YRsPEMIDlysg~-pI~  236 (738)
T KOG1989|consen  214 EKYTTPQYRSPEMIDLYSGL-PIG  236 (738)
T ss_pred             HhhCCccccChHHHhhhcCC-CCc
Confidence                 11 224677888743 444

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=98.18  E-value=1.5e-05  Score=72.32  Aligned_cols=76  Identities=17%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -++.+|.|..+.||++....  ..|.+|+....      ....+..|.++++.+..   -.+++++..... .+..+++|
T Consensus         5 ~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h---~~iv~~~~~~~~-~~~~~lv~   80 (376)
T cd05598           5 KIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADN---EWVVKLYYSFQD-KDNLYFVM   80 (376)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCC---CCcceEEEEEEc-CCEEEEEE
Confidence            35788999899999998643  37888987531      12346678888877753   234555544332 56889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus        81 E~~~~g~L   88 (376)
T cd05598          81 DYIPGGDM   88 (376)
T ss_pred             eCCCCCcH
Confidence            99998744

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=6.1e-06  Score=76.90  Aligned_cols=161  Identities=17%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             CCcchHHHHHHhc--CC---------CcceeeeeeeCCccccceEEEEeCCc--cEEEEecCCC------CcchHHHHHH
Q 022304            6 LSDDPIREWILSE--GK---------ATHITKICPVGGGCINLASRYGTDAG--SFFVKTNRSI------GPSMFEGEAL   66 (299)
Q Consensus         6 ~~~~~i~~~l~~~--~~---------~~~~~~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~------~~~~~~~E~~   66 (299)
                      ...++.++.|...  .+         -.-.+.|..||-|....|-.+...+.  -|..|.-+..      .-..+++|.+
T Consensus       602 ~~q~qMrkmL~QKESnYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERD  681 (1034)
T KOG0608|consen  602 IMQNQMRKMLQQKESNYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERD  681 (1034)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhh
Confidence            3445566666543  11         23467788999887777666554332  3444543321      1234567777


Q ss_pred             HHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCC
Q 022304           67 GLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKW  146 (299)
Q Consensus        67 ~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~  146 (299)
                      +|..-.   .--|.++|..-.+ ++.-|+||+||+|+       .|...|-+|--       |.                
T Consensus       682 ILAEAD---n~WVVrLyySFQD-kdnLYFVMdYIPGG-------DmMSLLIrmgI-------Fe----------------  727 (1034)
T KOG0608|consen  682 ILAEAD---NEWVVRLYYSFQD-KDNLYFVMDYIPGG-------DMMSLLIRMGI-------FE----------------  727 (1034)
T ss_pred             hHhhcC---CcceEEEEEEecc-CCceEEEEeccCCc-------cHHHHHHHhcc-------CH----------------
Confidence            664332   3468888865433 57889999999998       45566665411       11                


Q ss_pred             CCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcccccc
Q 022304          147 TSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYY  226 (299)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~  226 (299)
                       ++...||..                     .+.=.++.   .     -.-++||+|++|+|||+|.+|.+.+-||..|-
T Consensus       728 -E~LARFYIA---------------------EltcAies---V-----HkmGFIHRDiKPDNILIDrdGHIKLTDFGLCT  777 (1034)
T KOG0608|consen  728 -EDLARFYIA---------------------ELTCAIES---V-----HKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  777 (1034)
T ss_pred             -HHHHHHHHH---------------------HHHHHHHH---H-----HhccceecccCccceEEccCCceeeeeccccc
Confidence             111112211                     11111111   1     14689999999999999999988999987665


Q ss_pred             CCch
Q 022304          227 GHNE  230 (299)
Q Consensus       227 g~~~  230 (299)
                      |-++
T Consensus       778 GfRW  781 (1034)
T KOG0608|consen  778 GFRW  781 (1034)
T ss_pred             ccee
Confidence            5443

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=98.14  E-value=1.7e-05  Score=72.21  Aligned_cols=76  Identities=17%  Similarity=0.099  Sum_probs=51.6

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ..++.+|.|..+.||++... .+ .|.+|+....      ....+..|..+++.+..   -.+++++..... .+..+++
T Consensus         4 ~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h---~~iv~l~~~~~~-~~~~~lv   79 (381)
T cd05626           4 VKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADN---EWVVKLYYSFQD-KDNLYFV   79 (381)
T ss_pred             eEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCC---CCeeeeEEEEec-CCEEEEE
Confidence            45678999999999998763 23 7888987531      12335677777776643   235555554433 5678999


Q ss_pred             EecccCCC
Q 022304           97 MEFIEFGS  104 (299)
Q Consensus        97 ~e~l~G~~  104 (299)
                      |||++|..
T Consensus        80 ~E~~~gg~   87 (381)
T cd05626          80 MDYIPGGD   87 (381)
T ss_pred             EecCCCCc
Confidence            99999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=98.12  E-value=2.2e-05  Score=70.76  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             eeeeeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ..++.+|.|..+.||++...+ + .|.+|+....      ....+..|..++..+..   -.+++++..... .+..+++
T Consensus         4 ~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~iv~~~~~~~~-~~~~~lv   79 (360)
T cd05627           4 ESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADG---AWVVKMFYSFQD-KRNLYLI   79 (360)
T ss_pred             eEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCC---CCEeeEEEEEEc-CCEEEEE
Confidence            346778888889999988743 3 7888976531      12345667777666532   234455543332 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus        80 ~E~~~gg~L   88 (360)
T cd05627          80 MEFLPGGDM   88 (360)
T ss_pred             EeCCCCccH
Confidence            999998743

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=98.12  E-value=2e-05  Score=71.22  Aligned_cols=76  Identities=18%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -++.+|.|..+.||++.... + .|.+|+....      ....+..|..++..+..   ..+++.+..... ....+++|
T Consensus         5 ~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~---~~iv~~~~~~~~-~~~~~lv~   80 (363)
T cd05628           5 SLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADS---LWVVKMFYSFQD-KLNLYLIM   80 (363)
T ss_pred             EeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCC---CCcceEEEEEec-CCeEEEEE
Confidence            45678888889999987642 3 7888987531      12345667777766632   234555544332 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus        81 E~~~gg~L   88 (363)
T cd05628          81 EFLPGGDM   88 (363)
T ss_pred             cCCCCCcH
Confidence            99998643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.11  E-value=2.1e-05  Score=73.47  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=64.1

Q ss_pred             CCcchHHHHHHhcCCCcceee----e--eeeCCccccceEEEEeCCc-cEEEEecCCCCc--------------------
Q 022304            6 LSDDPIREWILSEGKATHITK----I--CPVGGGCINLASRYGTDAG-SFFVKTNRSIGP--------------------   58 (299)
Q Consensus         6 ~~~~~i~~~l~~~~~~~~~~~----~--~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~--------------------   58 (299)
                      -+.+++.+++++. +|..+.+    +  +|++.-....|++.++.+| .++||+-+++-+                    
T Consensus       140 ~~~ee~~~i~e~E-lG~~ie~if~~f~~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~  218 (538)
T KOG1235|consen  140 FPWEEAFKIFEEE-LGAPIEDIFSEFDEEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKF  218 (538)
T ss_pred             CCHHHHHHHHHHH-hCCCHHHHHHhcCcchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHh
Confidence            3568888999888 5554432    3  5565545568999999888 699998776300                    


Q ss_pred             --------------ch------HHHHHHHH----HHHHhcC---CCCCccceeecccCCCceEEEEecccCCCCCC
Q 022304           59 --------------SM------FEGEALGL----GAMYETR---TIRAPRPFKVGALPTGGSYIIMEFIEFGSSRG  107 (299)
Q Consensus        59 --------------~~------~~~E~~~l----~~L~~~~---~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~~  107 (299)
                                    ..      +-.|++-.    +.++...   .+.||++|+.-.   +.-.++|||++|.+..+
T Consensus       219 ~p~~~~~~lvdE~~~~L~~ELDF~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~s---t~RVLtME~~~G~~i~D  291 (538)
T KOG1235|consen  219 FPDFDLVWLVDEIAKSLPQELDFTKEAKNAERFRENFKDFSLLTYVLVPKVYWDLS---TKRVLTMEYVDGIKIND  291 (538)
T ss_pred             CcCCchhhHHHHHHhhhHhhcchHHHHHhHHHHHHHHHhcccccceeCCeehhhcC---cceEEEEEecCCccCCC
Confidence                          01      11233222    2333332   477999998764   47799999999987753

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=98.11  E-value=3.3e-05  Score=65.69  Aligned_cols=73  Identities=22%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             eeCCccccceEEEEeC--CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           29 PVGGGCINLASRYGTD--AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      .++.|..+.+|+++..  ++.+++|......    ...+..|.++++.+..   -.+++++..... ....+++|||++|
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~~~   77 (252)
T cd05084           2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSH---PNIVRLIGVCTQ-KQPIYIVMELVQG   77 (252)
T ss_pred             ccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCC---CCcceEEEEEcC-CCCeEEEEeeccC
Confidence            5777888899998763  3378889765321    2446778888877743   234556655433 4678999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        78 ~~L   80 (252)
T cd05084          78 GDF   80 (252)
T ss_pred             CcH
Confidence            744

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=98.09  E-value=2.2e-05  Score=70.60  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=51.3

Q ss_pred             eeeeeCCccccceEEEEeC-C-ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-A-GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .++.++.|..+.||++... + ..|++|+.....    ...+..|+++++.+..   -.+.+++..... .+..+++|||
T Consensus        78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~  153 (353)
T PLN00034         78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNH---PNVVKCHDMFDH-NGEIQVLLEF  153 (353)
T ss_pred             hhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCC---CCcceeeeEecc-CCeEEEEEec
Confidence            3567888888999998764 3 378999875321    2446778888877753   233444443322 4678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus       154 ~~~~~L  159 (353)
T PLN00034        154 MDGGSL  159 (353)
T ss_pred             CCCCcc
Confidence            998754

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.07  E-value=3.2e-05  Score=68.86  Aligned_cols=76  Identities=11%  Similarity=0.011  Sum_probs=48.8

Q ss_pred             eeeeCCccccceEEEEeC----Cc-cEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           27 ICPVGGGCINLASRYGTD----AG-SFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ++.+|.|..+.||++...    .+ .+.+|+....       ....+..|..+++.+..+  -.+++++..... .+..+
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~--~~i~~~~~~~~~-~~~~~   81 (332)
T cd05614           5 LKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQS--PFLVTLHYAFQT-EAKLH   81 (332)
T ss_pred             EEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCC--CCcccEEEEEec-CCEEE
Confidence            467888888999998752    23 6788876431       113356788888777543  123444433322 46789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|..+
T Consensus        82 lv~e~~~~g~L   92 (332)
T cd05614          82 LILDYVSGGEM   92 (332)
T ss_pred             EEEeCCCCCcH
Confidence            99999998743

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.06  E-value=3.3e-05  Score=68.60  Aligned_cols=76  Identities=12%  Similarity=0.033  Sum_probs=48.0

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +..+|.|..+.||++...+ + .|++|+....      ....+..|...+..+...  -.+++++..... .+..|++||
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~--~~i~~~~~~~~~-~~~~~lv~E   81 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKP--PFLTQLHSCFQT-MDRLYFVME   81 (324)
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCC--CceeeeEEEEEc-CCEEEEEEc
Confidence            4678888889999997643 2 6889987531      122344566666555432  224444443322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 ~~~~g~L   88 (324)
T cd05587          82 YVNGGDL   88 (324)
T ss_pred             CCCCCcH
Confidence            9998743

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=98.06  E-value=1.9e-05  Score=69.77  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=55.0

Q ss_pred             ceeeeee-eCCccccceEEEEeCCc-cEEEEecCCC-------------------------C----cchHHHHHHHHHHH
Q 022304           23 HITKICP-VGGGCINLASRYGTDAG-SFFVKTNRSI-------------------------G----PSMFEGEALGLGAM   71 (299)
Q Consensus        23 ~~~~~~~-~~~G~~n~~y~v~~~~g-~~vlK~~~~~-------------------------~----~~~~~~E~~~l~~L   71 (299)
                      .+..+.. |+.|-...||-++..+| .|.+||+...                         +    +...+.|.+-|..|
T Consensus       144 ~i~~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl  223 (520)
T KOG2270|consen  144 VIVEINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRL  223 (520)
T ss_pred             eeeecccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHH
Confidence            4555533 45666778999998887 7899988421                         0    12346788889999


Q ss_pred             HhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           72 YETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        72 ~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++. |+|+|+|+...     .+.+||+|+.+.
T Consensus       224 ~~a-GIP~PePIlLk-----~hVLVM~FlGrd  249 (520)
T KOG2270|consen  224 NNA-GIPCPEPILLK-----NHVLVMEFLGRD  249 (520)
T ss_pred             Hhc-CCCCCCceeee-----cceEeeeeccCC
Confidence            876 79999999886     459999999753

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=98.06  E-value=1.8e-05  Score=70.67  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=50.7

Q ss_pred             eeeeCCccccceEEEEe------CC-ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGT------DA-GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~------~~-g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.+|.|..+.||++..      .. ..+.+|+.....    ...+..|..++..+..+  -.+.+++.......+..++
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~niv~~~~~~~~~~~~~~l   89 (338)
T cd05102          12 GKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNH--LNVVNLLGACTKPNGPLMV   89 (338)
T ss_pred             eeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccC--cceeeEEeEecCCCCceEE
Confidence            46788898899999863      11 268888875421    23466788888888544  2345555543321346789


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|..+
T Consensus        90 v~ey~~~g~L   99 (338)
T cd05102          90 IVEFCKYGNL   99 (338)
T ss_pred             EEecCCCCcH
Confidence            9999999865

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=98.04  E-value=4.4e-05  Score=69.33  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=51.8

Q ss_pred             eeeeCCccccceEEEEe------CCc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGT------DAG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~------~~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.+|.|..+.||+++.      +.+ .+.+|+....    ....+..|.+++..+..+  -.+.+++..... .+..++
T Consensus        40 ~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~H--pnIv~l~~~~~~-~~~~~l  116 (375)
T cd05104          40 GKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNH--INIVNLLGACTV-GGPTLV  116 (375)
T ss_pred             hheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCC--cceeeeeeeecc-CCccee
Confidence            46788888899999863      122 6788876532    123466799888888544  245556654433 467899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|.++
T Consensus       117 v~E~~~~g~L  126 (375)
T cd05104         117 ITEYCCYGDL  126 (375)
T ss_pred             eehhccCCcH
Confidence            9999999765

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.03  E-value=8.9e-05  Score=66.89  Aligned_cols=142  Identities=20%  Similarity=0.222  Sum_probs=90.4

Q ss_pred             eeeCCccccceEEEEeCCc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCC-ceEEEEecccC
Q 022304           28 CPVGGGCINLASRYGTDAG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG-GSYIIMEFIEF  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~-~~~~v~e~l~G  102 (299)
                      ..+|.|....||+-...+| .+.||......   ...+..|+.++..++ |  -.+-+++.++.. .+ ..++|+||++.
T Consensus        81 ~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~-H--~Nlv~LlGyC~e-~~~~~~LVYEym~n  156 (361)
T KOG1187|consen   81 NLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLR-H--PNLVKLLGYCLE-GGEHRLLVYEYMPN  156 (361)
T ss_pred             cceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCC-C--cCcccEEEEEec-CCceEEEEEEccCC
Confidence            3567777889999999886 68888554421   234888999888887 3  356667887764 34 48999999998


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHH
Q 022304          103 GSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRL  182 (299)
Q Consensus       103 ~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (299)
                      +.+.          ..||.....                     ..+|..     |+.-.+                 .+
T Consensus       157 GsL~----------d~L~~~~~~---------------------~L~W~~-----R~kIa~-----------------g~  183 (361)
T KOG1187|consen  157 GSLE----------DHLHGKKGE---------------------PLDWET-----RLKIAL-----------------GA  183 (361)
T ss_pred             CCHH----------HHhCCCCCC---------------------CCCHHH-----HHHHHH-----------------HH
Confidence            6442          123332210                     125643     222111                 11


Q ss_pred             HHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCC
Q 022304          183 MKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGH  228 (299)
Q Consensus       183 ~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~  228 (299)
                      ...+. +|.. ..++.+||+|+++.|||+|.+.++.|-||. +..++
T Consensus       184 A~gL~-yLH~-~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~  228 (361)
T KOG1187|consen  184 ARGLA-YLHE-GCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGP  228 (361)
T ss_pred             HHHHH-HHcc-CCCCCEecCCCCHHHeeECCCCCEEccCccCcccCC
Confidence            11222 2222 356799999999999999988888898974 44444

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=98.02  E-value=2.7e-05  Score=69.72  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=49.4

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.++.|..+.||++...  +..|++|+....      ....+..|..++..+..   -.+++++..... .+..+++||
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~lv~e   81 (350)
T cd05573           6 IKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADS---PWIVKLYYSFQD-EEHLYLVME   81 (350)
T ss_pred             EEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCC---CCccchhhheec-CCeEEEEEc
Confidence            467888888999999875  347889987531      12345677777776652   234444433222 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|.++
T Consensus        82 ~~~~~~L   88 (350)
T cd05573          82 YMPGGDL   88 (350)
T ss_pred             CCCCCCH
Confidence            9998643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.02  E-value=8.6e-05  Score=63.69  Aligned_cols=75  Identities=20%  Similarity=0.225  Sum_probs=51.2

Q ss_pred             eeeeeCCccccceEEEEeCC-ccEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDA-GSFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      -.+.++.|..+.||++...+ +++.+|+....  ....+..|.++++.+..   ..+.+++....  .+..+++|++++|
T Consensus        10 ~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~---~~i~~~~~~~~--~~~~~lv~e~~~~   84 (262)
T cd05071          10 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH---EKLVQLYAVVS--EEPIYIVTEYMSK   84 (262)
T ss_pred             EeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCC---CCcceEEEEEC--CCCcEEEEEcCCC
Confidence            34568888888999987644 37888988642  23456788888888753   23444444332  4567999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      .++
T Consensus        85 ~~L   87 (262)
T cd05071          85 GSL   87 (262)
T ss_pred             CcH
Confidence            754

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=98.02  E-value=6.6e-05  Score=63.69  Aligned_cols=73  Identities=22%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             eeCCccccceEEEEeCCc-cEEEEecCCCCc----chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           29 PVGGGCINLASRYGTDAG-SFFVKTNRSIGP----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .++.|..+.||+....++ .+++|.......    ..+..|...++.+..   ..+++++..... .+..+++||+++|.
T Consensus         2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~~~~   77 (250)
T cd05085           2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDH---PNIVKLIGVCTQ-RQPIYIVMELVPGG   77 (250)
T ss_pred             ccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCC---CCcCeEEEEEec-CCccEEEEECCCCC
Confidence            467777789999876555 788898764321    235567777777642   235555554433 46789999999987


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      ++
T Consensus        78 ~L   79 (250)
T cd05085          78 DF   79 (250)
T ss_pred             cH
Confidence            43

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.02  E-value=4e-05  Score=67.96  Aligned_cols=73  Identities=15%  Similarity=0.089  Sum_probs=45.4

Q ss_pred             eeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++...+ + .|.+|+....      ....+..|...+..+..+  -.+++++..... .+..+++|||+
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h--~~iv~~~~~~~~-~~~~~iv~Ey~   78 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNH--PFLTQLYCCFQT-PDRLFFVMEFV   78 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCC--CchhceeeEEEc-CCEEEEEEcCC
Confidence            46778888999998643 3 6888876531      112234566655554433  234555544332 46789999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|..
T Consensus        79 ~~g~   82 (320)
T cd05590          79 NGGD   82 (320)
T ss_pred             CCch
Confidence            9863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=98.02  E-value=3.5e-05  Score=68.69  Aligned_cols=75  Identities=13%  Similarity=-0.026  Sum_probs=49.7

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.++.|..+.||++...+  ..+++|+....      ....+..|..++..+..   -.+++++..... .+..+++||
T Consensus         6 ~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h---~~iv~~~~~~~~-~~~~~lv~e   81 (333)
T cd05600           6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKS---EWLVKLLYAFQD-DEYLYLAME   81 (333)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCC---CCCccEEEEEEc-CCEEEEEEe
Confidence            5678888889999998643  37888987531      12234567777766642   234555544332 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 ~~~g~~L   88 (333)
T cd05600          82 YVPGGDF   88 (333)
T ss_pred             CCCCCCH
Confidence            9999744

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=98.02  E-value=5.5e-05  Score=65.92  Aligned_cols=73  Identities=12%  Similarity=0.068  Sum_probs=48.6

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.++.|..+.||+....  +..+.+|.....    ....+..|..+++.|..   -.+.+++..... .+..+++||+
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~-~~~~~lv~e~   84 (288)
T cd07871           9 KLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKH---ANIVTLHDIIHT-ERCLTLVFEY   84 (288)
T ss_pred             EeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCC---CCEeeEEEEEcC-CCeEEEEEeC
Confidence            3567888888999998764  237888876521    12345678888877743   234455544332 4578999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        85 ~~~   87 (288)
T cd07871          85 LDS   87 (288)
T ss_pred             CCc
Confidence            986

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=98.02  E-value=5.4e-05  Score=67.46  Aligned_cols=75  Identities=12%  Similarity=0.048  Sum_probs=49.0

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++...  +..|.+|+....      ....+..|..++..+..   --++.++..... .+..+++||
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~lv~e   81 (331)
T cd05597           6 LKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDR---RWITNLHYAFQD-ENNLYLVMD   81 (331)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCC---CCCCceEEEEec-CCeEEEEEe
Confidence            467888888999998864  337888986421      12335667776666532   234555544332 567899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 ~~~g~~L   88 (331)
T cd05597          82 YYVGGDL   88 (331)
T ss_pred             cCCCCcH
Confidence            9998744

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.01  E-value=9.8e-05  Score=62.94  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      .+.++.|..+.+|+....+..+++|..... ....+..|+..++.+..   ..+.+++.......+..++++|+++|.++
T Consensus        11 ~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~~~~~~~lv~e~~~~~~L   87 (256)
T cd05082          11 LQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRH---SNLVQLLGVIVEEKGGLYIVTEYMAKGSL   87 (256)
T ss_pred             eeeecccCCCeEEEEEEcCCcEEEEEeCCCchHHHHHHHHHHHHhCCC---CCeeeEEEEEEcCCCceEEEEECCCCCcH
Confidence            356777777899999877778999987643 22346678888777743   23444443322214578999999998744

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=98.01  E-value=4.4e-05  Score=69.44  Aligned_cols=77  Identities=18%  Similarity=0.106  Sum_probs=51.4

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ..+..+|.|..+.||++... .+ .|.+|+....      ....+..|..+++.+..   -.+++++..... .+..+++
T Consensus         4 ~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h---~~iv~~~~~~~~-~~~~~lv   79 (382)
T cd05625           4 VKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADN---EWVVRLYYSFQD-KDNLYFV   79 (382)
T ss_pred             EEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCC---CcCCeEEEEEEe-CCEEEEE
Confidence            45678899999999998763 33 6788876531      12345678777776643   235555554332 5678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus        80 ~E~~~gg~L   88 (382)
T cd05625          80 MDYIPGGDM   88 (382)
T ss_pred             EeCCCCCcH
Confidence            999998743

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.01  E-value=8.9e-05  Score=69.65  Aligned_cols=75  Identities=16%  Similarity=-0.010  Sum_probs=49.0

Q ss_pred             eeeeCCccccceEEEEeC---CccEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD---AGSFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~---~g~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+.++.|....+|++...   +..+++|......   ...++.|+.++..+..   -.+++++..... .+..+++|||+
T Consensus        72 ~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~H---pniv~~~~~~~~-~~~~~lv~E~~  147 (478)
T PTZ00267         72 TTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDH---FGIVKHFDDFKS-DDKLLLIMEYG  147 (478)
T ss_pred             EEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCC---CCEeEEEEEEEE-CCEEEEEEECC
Confidence            345677777888988653   2367788654321   2345668877776642   235666655433 57899999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus       148 ~gg~L  152 (478)
T PTZ00267        148 SGGDL  152 (478)
T ss_pred             CCCCH
Confidence            99855

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=98.01  E-value=4.4e-05  Score=67.92  Aligned_cols=75  Identities=20%  Similarity=0.151  Sum_probs=48.1

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.++.|..+.||++... .+ .+++|+....      ....+..|..+++.+..   -.+++++..... ....+++||
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~---~~i~~~~~~~~~-~~~~~lv~e   81 (330)
T cd05601           6 KSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNS---PWIPQLQYAFQD-KDNLYLVME   81 (330)
T ss_pred             EEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCC---CCCcceeeEEec-CCeEEEEEC
Confidence            467888888999998764 33 7888987531      12345667766655432   234555543322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 ~~~~~~L   88 (330)
T cd05601          82 YQPGGDL   88 (330)
T ss_pred             CCCCCCH
Confidence            9998743

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.00  E-value=5.1e-05  Score=67.31  Aligned_cols=74  Identities=11%  Similarity=0.016  Sum_probs=46.7

Q ss_pred             eeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++...+ + .|.+|+....      ....+..|.+++..+..+  -.+++++..... .+..+++||++
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h--p~i~~~~~~~~~-~~~~~lv~E~~   78 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKH--PFLTALHCCFQT-KDRLFFVMEYV   78 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCC--CCccceeeEEEc-CCeEEEEEeCC
Confidence            46778888999998643 3 7888987531      112344566666655443  234555544332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~~~~L   83 (321)
T cd05591          79 NGGDL   83 (321)
T ss_pred             CCCcH
Confidence            98743

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=98.00  E-value=4e-05  Score=69.57  Aligned_cols=75  Identities=17%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++... .+ .|.+|.....      ....+..|..++..+..   --+++++..... .+..|++||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~h---p~iv~~~~~~~~-~~~~~lv~E   81 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDS---PWVVSLYYSFQD-AQYLYLIME   81 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCC---CCcceEEEEEEc-CCeeEEEEe
Confidence            467888888999998763 33 7888876421      12345668877766643   234555554332 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 ~~~gg~L   88 (377)
T cd05629          82 FLPGGDL   88 (377)
T ss_pred             CCCCCcH
Confidence            9998744

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=98.00  E-value=4.4e-05  Score=67.57  Aligned_cols=73  Identities=16%  Similarity=0.102  Sum_probs=47.1

Q ss_pred             eeeCCccccceEEEEeC----Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           28 CPVGGGCINLASRYGTD----AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      +.+|.|..+.||++...    .| .|.+|+....     ....+..|..++..|..   -.+++++..... .+..|++|
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~-~~~~~lv~   77 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNH---PFIVKLHYAFQT-EGKLYLIL   77 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCC---CCcccEEEEEEc-CCEEEEEE
Confidence            45778888899988642    23 6888877531     12334567777777642   234555544333 56889999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      ||++|..
T Consensus        78 e~~~~~~   84 (318)
T cd05582          78 DFLRGGD   84 (318)
T ss_pred             cCCCCCc
Confidence            9999863

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=97.99  E-value=5.7e-05  Score=67.28  Aligned_cols=75  Identities=13%  Similarity=0.033  Sum_probs=50.8

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.++.|..+.||++.... + .+++|+....      ....+..|..+++.+..   -.+.+++..... .+..+++||
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~e   98 (329)
T PTZ00263         23 GETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSH---PFIVNMMCSFQD-ENRVYFLLE   98 (329)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCC---CCCCcEEEEEEc-CCEEEEEEc
Confidence            4678888889999988642 3 7888977531      12346678888877743   234555544332 568899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        99 ~~~~~~L  105 (329)
T PTZ00263         99 FVVGGEL  105 (329)
T ss_pred             CCCCChH
Confidence            9998743

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.99  E-value=5e-05  Score=68.54  Aligned_cols=74  Identities=18%  Similarity=0.140  Sum_probs=50.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++... .+ .+++|+....      ....+..|..++..+..   -.+++++..... .+..+++||
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h---~~iv~~~~~~~~-~~~~~lv~E   81 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADN---PWVVKLYYSFQD-ENYLYLIME   81 (364)
T ss_pred             EEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCC---CCCcceEEEEEc-CCeEEEEEC
Confidence            567888888999998874 23 7888987531      12335678888877752   235556654333 568899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      +++|..
T Consensus        82 ~~~~g~   87 (364)
T cd05599          82 YLPGGD   87 (364)
T ss_pred             CCCCcH
Confidence            998863

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=97.98  E-value=0.00011  Score=62.95  Aligned_cols=76  Identities=21%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             eeeeeCCccccceEEEEeCCc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDAG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      -.+.++.|..+.+|++...++ .+++|......  ...+..|...++.+..   ..+++++..... .+..+++|++++|
T Consensus        10 ~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~~~   85 (261)
T cd05068          10 LLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRH---PKLIQLYAVCTL-EEPIYIVTELMKY   85 (261)
T ss_pred             eEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCC---CCccceeEEEec-CCCeeeeeecccC
Confidence            347788888889999775444 78888876422  2446678888877753   234555554332 4678999999988


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      .++
T Consensus        86 ~~L   88 (261)
T cd05068          86 GSL   88 (261)
T ss_pred             CcH
Confidence            644

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=97.98  E-value=5.2e-05  Score=67.39  Aligned_cols=136  Identities=18%  Similarity=0.127  Sum_probs=88.0

Q ss_pred             eeeeeCCccccceEEEEeCCc--cEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDAG--SFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -+..+|.|....||.++..+.  -|.+|+-....      ..+.+.|.++|..|. +  --.|++|..-++ +...+++|
T Consensus        81 llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lD-H--PFlPTLYa~fet-~~~~cl~m  156 (459)
T KOG0610|consen   81 LLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLD-H--PFLPTLYASFET-DKYSCLVM  156 (459)
T ss_pred             HHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcC-C--Cccchhhheeec-cceeEEEE
Confidence            356789999999999998653  56778765421      244677888888774 3  347999976554 57889999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      ||++|+++.          ...|+.+..  .|                 .++-..||..                     
T Consensus       157 eyCpGGdL~----------~LrqkQp~~--~f-----------------se~~aRFYaA---------------------  186 (459)
T KOG0610|consen  157 EYCPGGDLH----------SLRQKQPGK--RF-----------------SESAARFYAA---------------------  186 (459)
T ss_pred             ecCCCccHH----------HHHhhCCCC--cc-----------------chhhHHHHHH---------------------
Confidence            999997541          112222210  01                 1111223321                     


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                         +++-.+. +|.    -.++|=+||+|.|||+.++|.+.+.||+
T Consensus       187 ---Evl~ALE-YLH----mlGivYRDLKPENILvredGHIMLsDFD  224 (459)
T KOG0610|consen  187 ---EVLLALE-YLH----MLGIVYRDLKPENILVREDGHIMLSDFD  224 (459)
T ss_pred             ---HHHHHHH-HHH----hhceeeccCCcceeEEecCCcEEeeecc
Confidence               1111122 222    2589999999999999999999999976

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.97  E-value=0.00013  Score=72.71  Aligned_cols=75  Identities=16%  Similarity=0.041  Sum_probs=50.6

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC--C----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI--G----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~--~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++.... + .+.+|.....  .    ...+..|..++..+..   -.+++++..... .+..+++|+
T Consensus         7 i~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~H---PNIVkl~~v~~d-~~~lyLVME   82 (932)
T PRK13184          7 IRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIH---PGIVPVYSICSD-GDPVYYTMP   82 (932)
T ss_pred             EEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCC---cCcCeEEEEEee-CCEEEEEEE
Confidence            4678888889999987642 3 7888977532  1    2345678877777753   234555554433 568899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|.++
T Consensus        83 Y~eGGSL   89 (932)
T PRK13184         83 YIEGYTL   89 (932)
T ss_pred             cCCCCCH
Confidence            9999744

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=97.96  E-value=5e-05  Score=67.43  Aligned_cols=73  Identities=18%  Similarity=0.128  Sum_probs=47.2

Q ss_pred             eeeCCccccceEEEEeC----Cc-cEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           28 CPVGGGCINLASRYGTD----AG-SFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      +.+|.|..+.||++...    .+ .+.+|+....       ....+..|..+++.+..   -.+.+++..... .+..++
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~h---p~iv~~~~~~~~-~~~~~l   77 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKH---PFIVDLIYAFQT-GGKLYL   77 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCC---CchhceeeEEec-CCeEEE
Confidence            56788888999998752    22 6888876421       12335578888877753   123444433322 568899


Q ss_pred             EEecccCCC
Q 022304           96 IMEFIEFGS  104 (299)
Q Consensus        96 v~e~l~G~~  104 (299)
                      +|||++|..
T Consensus        78 v~e~~~~~~   86 (323)
T cd05584          78 ILEYLSGGE   86 (323)
T ss_pred             EEeCCCCch
Confidence            999999864

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=97.96  E-value=4.9e-05  Score=67.66  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=47.9

Q ss_pred             eeCCccccceEEEEeCCc--cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDAG--SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g--~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++....+  .+.+|+....      ....+..|..++..+..+  -.+++++..... ....+++||++
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~i~~~~~~~~~-~~~~~lv~e~~   78 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSN--PFLVGLHSCFQT-TSRLFLVIEYV   78 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCC--CCEeeEEEEEEe-CCEEEEEEeCC
Confidence            467888889999986433  6888887631      112355677766666543  234555544332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~~~~L   83 (327)
T cd05617          79 NGGDL   83 (327)
T ss_pred             CCCcH
Confidence            98744

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=97.95  E-value=5.2e-05  Score=67.54  Aligned_cols=74  Identities=9%  Similarity=0.023  Sum_probs=48.7

Q ss_pred             eeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++.... + .|.+|+....      ....+..|..++..+..+  -.+++++..... ....+++|||+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~h--p~Iv~~~~~~~~-~~~~~lv~e~~   78 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNH--PFLVGLHSCFQT-ESRLFFVIEFV   78 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCC--CCCCceEEEEEc-CCEEEEEEeCC
Confidence            46778788999998743 3 7888977531      123356777777777544  234555544332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~~g~L   83 (329)
T cd05588          79 SGGDL   83 (329)
T ss_pred             CCCCH
Confidence            98743

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=97.95  E-value=8.7e-05  Score=63.48  Aligned_cols=74  Identities=22%  Similarity=0.227  Sum_probs=48.8

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.++.|..+.+|++...++ .+++|......  ...+..|..+++.+...   .+.+++....  .+..+++|++++|.
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~---~i~~~~~~~~--~~~~~~v~e~~~~~   85 (260)
T cd05069          11 DVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHD---KLVPLYAVVS--EEPIYIVTEFMGKG   85 (260)
T ss_pred             eeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCC---CeeeEEEEEc--CCCcEEEEEcCCCC
Confidence            35688888889999976544 78889876422  24466788888877532   1222333322  35679999999886


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      ++
T Consensus        86 ~L   87 (260)
T cd05069          86 SL   87 (260)
T ss_pred             CH
Confidence            43

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=97.94  E-value=0.00011  Score=65.55  Aligned_cols=78  Identities=17%  Similarity=0.047  Sum_probs=52.6

Q ss_pred             eeeeeeeCCccccceEEEEeCC-c-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ..-++.++.|..+.||++.... + .+.+|+....    ....+..|.+.++.+..   -.+.+++..... .+..+++|
T Consensus         7 y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~   82 (331)
T cd06649           7 FERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNS---PYIVGFYGAFYS-DGEISICM   82 (331)
T ss_pred             ceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCC---CCCCeEEEEEEE-CCEEEEEe
Confidence            3446778989889999988753 3 6777876532    12446778888877753   234555544332 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus        83 e~~~~~~L   90 (331)
T cd06649          83 EHMDGGSL   90 (331)
T ss_pred             ecCCCCcH
Confidence            99998754

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=97.94  E-value=8.8e-05  Score=65.87  Aligned_cols=78  Identities=12%  Similarity=0.023  Sum_probs=48.7

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +..+|.|..+.||++...  +..|++|+....      ....+..|...+..+.......+.+++..... .+..+++||
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~-~~~~~lv~E   82 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQT-EDHVCFVME   82 (324)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEc-CCEEEEEEc
Confidence            456788888899998764  237888987531      12345566666655543211234445543332 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        83 ~~~~~~L   89 (324)
T cd05589          83 YAAGGDL   89 (324)
T ss_pred             CCCCCcH
Confidence            9998743

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=97.93  E-value=9.2e-05  Score=63.02  Aligned_cols=73  Identities=16%  Similarity=0.051  Sum_probs=51.5

Q ss_pred             eeeeCCccccceEEEEeCCc--cEEEEecCCCCc-----chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDAG--SFFVKTNRSIGP-----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~~~-----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.+|.|..+.||++...+.  .|++|+......     .....|...++.+. +  -.+++++..... ....+++|++
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~-~--~~i~~~~~~~~~-~~~~~~v~~~   79 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLR-H--PNIVQILDVFQD-DNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHT-B--TTBCHEEEEEEE-SSEEEEEEEE
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccc-c--cccccccccccc-cccccccccc
Confidence            46788898899999998644  799999875422     11234788888884 3  235556655433 5678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      ++|.
T Consensus        80 ~~~~   83 (260)
T PF00069_consen   80 CPGG   83 (260)
T ss_dssp             ETTE
T ss_pred             cccc
Confidence            9996

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=97.93  E-value=0.00014  Score=63.80  Aligned_cols=73  Identities=14%  Similarity=0.061  Sum_probs=48.8

Q ss_pred             eeeeeCCccccceEEEEeC-C-ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-A-GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.+|.|..+.||++... + ..+++|+....    .......|+.+++.+...   .+.+++..... ....+++|||
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~-~~~~~lv~e~   84 (303)
T cd07869           9 KLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHA---NIVLLHDIIHT-KETLTLVFEY   84 (303)
T ss_pred             EeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCC---CcCeEEEEEec-CCeEEEEEEC
Confidence            4578888888999999874 3 37888987531    123456788888877532   23444443332 4678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        85 ~~~   87 (303)
T cd07869          85 VHT   87 (303)
T ss_pred             CCc
Confidence            976

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=97.92  E-value=0.00024  Score=60.29  Aligned_cols=74  Identities=19%  Similarity=0.100  Sum_probs=52.0

Q ss_pred             eeeCCccccceEEEEeCC------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           28 CPVGGGCINLASRYGTDA------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      +.++.|..+.+|++...+      ..+++|......    ...+..|...++.+. +  ..+++++..... .+..+++|
T Consensus         5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~-~--~~i~~~~~~~~~-~~~~~~i~   80 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLD-H--PNIVKLLGVCTE-EEPLMIVM   80 (258)
T ss_pred             ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcC-C--CchheEEEEEcC-CCeeEEEE
Confidence            567888888999988754      368889886532    345677888888883 3  245556654433 46889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ++.+|.++
T Consensus        81 e~~~~~~l   88 (258)
T smart00219       81 EYMEGGDL   88 (258)
T ss_pred             eccCCCCH
Confidence            99998644

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=97.92  E-value=0.00014  Score=64.18  Aligned_cols=75  Identities=13%  Similarity=0.010  Sum_probs=51.2

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ...++.|..+.+|++...+  ..|++|......      ...+..|...++.+..   -.+++++..... ....+++||
T Consensus         6 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~e   81 (316)
T cd05574           6 IKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDH---PFLPTLYASFQT-ETYLCLVMD   81 (316)
T ss_pred             eeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCC---CCchhheeeeec-CCEEEEEEE
Confidence            4567888888999998753  388999876421      1235667777777753   245666655433 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      ++.|..+
T Consensus        82 ~~~~~~L   88 (316)
T cd05574          82 YCPGGEL   88 (316)
T ss_pred             ecCCCCH
Confidence            9998743

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=97.92  E-value=0.00025  Score=61.73  Aligned_cols=75  Identities=16%  Similarity=0.109  Sum_probs=49.3

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCCCc---chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSIGP---SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~~---~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +..++.|..+.+|++.... + .+++|.......   ..+..|...++.+..   -.+++++..... ++..+++|+|++
T Consensus        17 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~~   92 (292)
T cd06644          17 IGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNH---PYIVKLLGAFYW-DGKLWIMIEFCP   92 (292)
T ss_pred             hheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCC---CcEeeeEEEEEe-CCeEEEEEecCC
Confidence            4567888888999998754 3 788888764322   234567766666642   234555544332 568999999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        93 ~~~l   96 (292)
T cd06644          93 GGAV   96 (292)
T ss_pred             CCcH
Confidence            8743

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=97.92  E-value=8e-05  Score=66.13  Aligned_cols=76  Identities=12%  Similarity=0.047  Sum_probs=47.7

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ...+|.|..+.||++... ++ .|.+|+....      ....+..|..++..+..+  -.+++++..... .+..+++||
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~--~~i~~~~~~~~~-~~~~~lv~E   81 (323)
T cd05615           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP--PFLTQLHSCFQT-VDRLYFVME   81 (323)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCC--CchhheeeEEec-CCEEEEEEc
Confidence            456788888999998764 33 7888977531      112244566666555432  234555543322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 y~~~g~L   88 (323)
T cd05615          82 YVNGGDL   88 (323)
T ss_pred             CCCCCcH
Confidence            9998743

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=97.92  E-value=0.00022  Score=61.82  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=52.0

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeeccc---C-CCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL---P-TGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~---~-~~~~~~v~e   98 (299)
                      ++.++.|..+.+|++....  ..+.+|+....  ....+..|...++.+.++  ..+++++.....   . .+..+++||
T Consensus        23 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h--~~i~~~~~~~~~~~~~~~~~~~lv~e  100 (286)
T cd06638          23 IETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDH--PNVVKFYGMYYKKDVKNGDQLWLVLE  100 (286)
T ss_pred             eeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcC--CCeeeeeeeeeecccCCCCeEEEEEe
Confidence            4678888888999987632  37888986542  224567788888888654  245555543211   1 346899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus       101 ~~~~~~L  107 (286)
T cd06638         101 LCNGGSV  107 (286)
T ss_pred             ecCCCCH
Confidence            9999754

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=97.92  E-value=6.8e-05  Score=66.80  Aligned_cols=74  Identities=8%  Similarity=0.017  Sum_probs=47.1

Q ss_pred             eeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++.... + .|.+|+....      ....+..|..++..+..+  -.+++++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~h--p~iv~~~~~~~~-~~~~~lv~E~~   78 (329)
T cd05618           2 VIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNH--PFLVGLHSCFQT-ESRLFFVIEYV   78 (329)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCC--CcCCceeeEEEe-CCEEEEEEeCC
Confidence            46778889999988643 3 6888877531      112345676666655443  234455544332 56889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~~~~L   83 (329)
T cd05618          79 NGGDL   83 (329)
T ss_pred             CCCCH
Confidence            98743

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=97.92  E-value=0.00012  Score=64.54  Aligned_cols=74  Identities=12%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .-++.++.|..+.||+.+..  +..+++|.....    .......|...++.+..   -.+.+++..... ++..+++||
T Consensus         9 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e   84 (309)
T cd07872           9 IKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKH---ANIVTLHDIVHT-DKSLTLVFE   84 (309)
T ss_pred             EEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCC---CCcceEEEEEee-CCeEEEEEe
Confidence            34678888888999998763  336888876521    12335578888877743   234455544332 567899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      |+++
T Consensus        85 ~~~~   88 (309)
T cd07872          85 YLDK   88 (309)
T ss_pred             CCCC
Confidence            9875

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=97.91  E-value=0.00016  Score=61.80  Aligned_cols=78  Identities=22%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             eeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           24 ITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..-+++++.|..+.+|+....++ .+++|.....  ....+..|..+++.+..   -.+.+++..... .+..+++++++
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   83 (261)
T cd05072           8 IKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQH---DKLVRLYAVVTK-EEPIYIITEYM   83 (261)
T ss_pred             eEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCC---CCeeeEEEEEcC-CCCcEEEEecC
Confidence            34467888888889999876544 7888876532  23456678888877753   234444443332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus        84 ~~~~L   88 (261)
T cd05072          84 AKGSL   88 (261)
T ss_pred             CCCcH
Confidence            98644

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=97.91  E-value=8.9e-05  Score=65.65  Aligned_cols=74  Identities=15%  Similarity=0.083  Sum_probs=44.7

Q ss_pred             eeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++...+ + .|++|.....      .......|..++..+..+  -.+++++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h--p~i~~~~~~~~~-~~~~~lv~e~~   78 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEH--PFLTHLFCTFQT-KEHLFFVMEYL   78 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCC--CCccceeeEEEc-CCEEEEEEcCC
Confidence            46778889999998643 3 6888876531      112233455544433333  234555544332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~gg~L   83 (316)
T cd05592          79 NGGDL   83 (316)
T ss_pred             CCCcH
Confidence            98743

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=97.90  E-value=0.0001  Score=72.13  Aligned_cols=75  Identities=13%  Similarity=0.125  Sum_probs=49.6

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.++.|..+.||++...  +..|.+|+.....      ...+..|...+..+..   -.+.+++..... .+..+++||
T Consensus         9 ~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~h---p~Iv~~~~~~~~-~~~~~lVmE   84 (669)
T cd05610           9 VKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKS---PFIVHLYYSLQS-ANNVYLVME   84 (669)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCC---CCcCeEEEEEEE-CCEEEEEEe
Confidence            577888888999999875  3378889876421      1345667777766643   123444443332 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        85 y~~g~~L   91 (669)
T cd05610          85 YLIGGDV   91 (669)
T ss_pred             CCCCCCH
Confidence            9998644

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=97.90  E-value=6e-05  Score=65.84  Aligned_cols=75  Identities=17%  Similarity=0.083  Sum_probs=49.0

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.++.|..+.||++...  +..+++|.....      ....+..|..+++.+..   -.+.+++..... ....+++||
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~e   81 (291)
T cd05612           6 IKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSH---PFIIRLFWTEHD-QRFLYMLME   81 (291)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCC---CcHhhhHhhhcc-CCeEEEEEe
Confidence            467888888999999864  337888976421      12345678877777643   123444433322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 ~~~~~~L   88 (291)
T cd05612          82 YVPGGEL   88 (291)
T ss_pred             CCCCCCH
Confidence            9998643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=97.90  E-value=7.9e-05  Score=66.17  Aligned_cols=73  Identities=14%  Similarity=-0.001  Sum_probs=46.0

Q ss_pred             eeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++... +| .|++|+....      ....+..|..+++.+..   -.+++++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~i~~~~~~~~~-~~~~~lv~E~~   77 (323)
T cd05595           2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH---PFLTALKYAFQT-HDRLCFVMEYA   77 (323)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCC---CCCcceeeEEec-CCEEEEEEeCC
Confidence            4677888899998863 33 7888987531      11234467777766643   134444433322 46889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        78 ~~~~L   82 (323)
T cd05595          78 NGGEL   82 (323)
T ss_pred             CCCcH
Confidence            98743

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=97.89  E-value=0.0002  Score=61.03  Aligned_cols=76  Identities=18%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             eeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      -.+.++.|..+.+|+++..++ .+.+|.....  ....+..|+..++.+..   -.+.+++..... .+..+++|+|++|
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~iv~e~~~~   83 (256)
T cd05114           8 FMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSH---PKLVQLYGVCTQ-QKPLYIVTEFMEN   83 (256)
T ss_pred             EeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCC---CCceeEEEEEcc-CCCEEEEEEcCCC
Confidence            356788888899999887655 7888876542  23456778888888753   223444544332 4678999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        84 ~~L   86 (256)
T cd05114          84 GCL   86 (256)
T ss_pred             CcH
Confidence            744

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=97.89  E-value=8.6e-05  Score=65.87  Aligned_cols=76  Identities=12%  Similarity=0.032  Sum_probs=45.5

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +..+|.|..+.||++...+ + .+.+|+....   .   ......|..++..+..+  -.+++++..... .+..+++||
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~--~~i~~~~~~~~~-~~~~~lv~E   81 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKP--PFLTQLHSCFQT-MDRLYFVME   81 (323)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCC--CeEeeEEEEEec-CCEEEEEEc
Confidence            4568888889999987643 3 7888976531   1   11233455555444322  223444443322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 ~~~~g~L   88 (323)
T cd05616          82 YVNGGDL   88 (323)
T ss_pred             CCCCCCH
Confidence            9998743

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=97.89  E-value=0.00026  Score=62.86  Aligned_cols=72  Identities=13%  Similarity=-0.015  Sum_probs=44.1

Q ss_pred             eeCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++... .+ .+.+|+....   .   ...+..|...+..+..   -.+++++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~h---p~i~~~~~~~~~-~~~~~lv~E~~   77 (325)
T cd05594           2 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRH---PFLTALKYSFQT-HDRLCFVMEYA   77 (325)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCC---CCCCceEEEEEc-CCEEEEEEeCC
Confidence            4677888899998753 33 7888887531   1   1223445555555432   234445443332 46789999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|..
T Consensus        78 ~~~~   81 (325)
T cd05594          78 NGGE   81 (325)
T ss_pred             CCCc
Confidence            9864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=97.89  E-value=0.0001  Score=66.79  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=49.4

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -++.+|.|..+.||++....  ..|++|+....      ....+..|..+++.+..   -.+++++..... ....+++|
T Consensus        47 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h---~~iv~~~~~~~~-~~~~~lv~  122 (370)
T cd05596          47 VIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANS---EWIVQLHYAFQD-DKYLYMVM  122 (370)
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCC---CCcceEEEEEec-CCEEEEEE
Confidence            35678888889999987642  37888976421      12335567777777643   234444443322 45789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus       123 Ey~~gg~L  130 (370)
T cd05596         123 EYMPGGDL  130 (370)
T ss_pred             cCCCCCcH
Confidence            99998744

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>PRK10345 hypothetical protein; Provisional

Probab=97.88  E-value=0.00012  Score=60.84  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=49.8

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCC---CcchHHHHHHHHHHHHhcC--CCCCccceeecccCC--CceE-E
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSI---GPSMFEGEALGLGAMYETR--TIRAPRPFKVGALPT--GGSY-I   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~--~~~vP~~~~~~~~~~--~~~~-~   95 (299)
                      ..+.+.+|.|....||+ ...++..++|+....   ....+.+|+..++.|....  --.+++++.+-.+..  |..+ +
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~   82 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDV   82 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEE
Confidence            34567899999889996 444555678876532   2355789999999996421  124677776655432  3323 6


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      ++++ +|
T Consensus        83 I~e~-~G   88 (210)
T PRK10345         83 IADF-DG   88 (210)
T ss_pred             EecC-CC
Confidence            7888 45

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=97.88  E-value=0.00012  Score=65.31  Aligned_cols=75  Identities=13%  Similarity=0.014  Sum_probs=45.4

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++....  ..|.+|+....      ....+..|..++..+..   --+++++..... .+..|++||
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~l~~~~~~-~~~~~lv~E   81 (331)
T cd05624           6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDC---QWITTLHYAFQD-ENYLYLVMD   81 (331)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCC---CCEeeEEEEEEc-CCEEEEEEe
Confidence            4678888889999988643  36888976431      11223445555443321   123444433322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 y~~gg~L   88 (331)
T cd05624          82 YYVGGDL   88 (331)
T ss_pred             CCCCCcH
Confidence            9999744

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=97.87  E-value=0.00018  Score=60.96  Aligned_cols=73  Identities=25%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             eeCCccccceEEEEeCCc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           29 PVGGGCINLASRYGTDAG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .++.|..+.+|++...++ .+.+|......    ...+..|...++.+..   -.+++++..... ....++++++++|.
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~~v~e~~~~~   77 (251)
T cd05041           2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDH---PNIVKLIGVCVQ-KQPIYIVMELVPGG   77 (251)
T ss_pred             ccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CCeEEEEEEEec-CCCeEEEEEcCCCC
Confidence            567777789999887544 88899876422    2345677777776642   134445544332 46789999999987


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      ++
T Consensus        78 ~l   79 (251)
T cd05041          78 SL   79 (251)
T ss_pred             cH
Confidence            43

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=97.87  E-value=0.00012  Score=64.87  Aligned_cols=74  Identities=18%  Similarity=0.113  Sum_probs=45.6

Q ss_pred             eeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++... .| .+.+|+....      .......|..++..+..+  ..+++++..... .+..+++|||+
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~--~~i~~~~~~~~~-~~~~~lv~E~~   78 (316)
T cd05620           2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWEN--PFLTHLYCTFQT-KEHLFFVMEFL   78 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCC--CCccCeeEEEEe-CCEEEEEECCC
Confidence            4677888899999864 23 7888877531      112234555555444333  234555544332 56889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~~g~L   83 (316)
T cd05620          79 NGGDL   83 (316)
T ss_pred             CCCcH
Confidence            98643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.87  E-value=8e-05  Score=66.07  Aligned_cols=74  Identities=15%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             eeeCCccccceEEEEeCC-c-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +++|.|....||+-...+ + .+.+|.-...     ..+.+..|+.+|+.|..   ..+-+++.+... .+..|+||||+
T Consensus        16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H---~nIV~l~d~~~~-~~~i~lVMEyC   91 (429)
T KOG0595|consen   16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKH---PNIVRLLDCIED-DDFIYLVMEYC   91 (429)
T ss_pred             hhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCC---cceeeEEEEEec-CCeEEEEEEeC
Confidence            458999999999977643 3 6677765432     23556789999988863   234555555444 57899999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|+++
T Consensus        92 ~gGDL   96 (429)
T KOG0595|consen   92 NGGDL   96 (429)
T ss_pred             CCCCH
Confidence            99855

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=97.86  E-value=0.00012  Score=62.40  Aligned_cols=74  Identities=19%  Similarity=0.140  Sum_probs=49.7

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      .+.++.|..+.+|+....+..+++|..... ....+..|...++.+..   -.+.+.+....  ....+++|++++|.++
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~--~~~~~~v~e~~~~~~L   85 (254)
T cd05083          11 GEIIGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHH---KNLVRLLGVIL--HNGLYIVMELMSKGNL   85 (254)
T ss_pred             eeeeccCCCCceEecccCCCceEEEeecCcchHHHHHHHHHHHHhCCC---CCcCeEEEEEc--CCCcEEEEECCCCCCH
Confidence            356777878899988766668999988643 33456778887777753   23344443322  3457999999998744

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=97.86  E-value=8.2e-05  Score=64.23  Aligned_cols=74  Identities=19%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             eeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           28 CPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      +.++.|..+.+|++...+       ..+.+|......    ...+..|++.++.+..   -.+.+++..... .+..+++
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv   86 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQH---ENIVKFYGVCTE-GDPPIMV   86 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCC---CCchheeeEEec-CCCeEEE
Confidence            567777778899886522       368888876422    2456778888887753   234555554433 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |++++|.++
T Consensus        87 ~e~~~~~~L   95 (280)
T cd05049          87 FEYMEHGDL   95 (280)
T ss_pred             EecCCCCCH
Confidence            999999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=97.86  E-value=0.00024  Score=60.46  Aligned_cols=75  Identities=17%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCC
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      .+.++.|..+.||+....+..+++|......  ...+..|...++.+...   .+.+++..... .+..+++||+.+|.+
T Consensus        11 ~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~---~i~~~~~~~~~-~~~~~~v~e~~~~~~   86 (256)
T cd05039          11 GATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHP---NLVQLLGVVLQ-GNPLYIVTEYMAKGS   86 (256)
T ss_pred             eeeeecCCCceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCc---ceeeeEEEEcC-CCCeEEEEEecCCCc
Confidence            4567888888999998877789999887532  23466788877777532   23344443322 467899999998864


Q ss_pred             C
Q 022304          105 S  105 (299)
Q Consensus       105 ~  105 (299)
                      +
T Consensus        87 L   87 (256)
T cd05039          87 L   87 (256)
T ss_pred             H
Confidence            3

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=97.85  E-value=0.00017  Score=65.41  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=48.1

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -+..+|.|..+.||++.... + .+.+|+....      ....+..|..+++.+..   -.+.+++..... ....+++|
T Consensus        47 ~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~h---p~iv~~~~~~~~-~~~~~lv~  122 (370)
T cd05621          47 VVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS---PWVVQLFCAFQD-DKYLYMVM  122 (370)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCC---CCEeeEEEEEEc-CCEEEEEE
Confidence            35678888889999988743 3 6788876421      12235567766665532   233444433222 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus       123 Ey~~gg~L  130 (370)
T cd05621         123 EYMPGGDL  130 (370)
T ss_pred             cCCCCCcH
Confidence            99999744

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=97.85  E-value=6.2e-05  Score=65.93  Aligned_cols=136  Identities=21%  Similarity=0.236  Sum_probs=81.2

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceee-ccc-CCC-ce
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKV-GAL-PTG-GS   93 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~-~~~-~~~-~~   93 (299)
                      ++..+..+|.|....||++... .+ -|.+|.-.-.    .+..+.+|.++++.-      ..|-++.+ +.. .++ ..
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~------~spyIV~~ygaF~~~~~~i  153 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSC------QSPYIVGFYGAFYSNGEEI  153 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhC------CCCCeeeEeEEEEeCCceE
Confidence            3445667889988999999864 33 5666766322    134456677665443      34555532 221 146 48


Q ss_pred             EEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCCh
Q 022304           94 YIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDS  173 (299)
Q Consensus        94 ~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (299)
                      .++|||.+|+.++       ..+.+.    .              ..+      +            ..+          
T Consensus       154 sI~mEYMDgGSLd-------~~~k~~----g--------------~i~------E------------~~L----------  180 (364)
T KOG0581|consen  154 SICMEYMDGGSLD-------DILKRV----G--------------RIP------E------------PVL----------  180 (364)
T ss_pred             EeehhhcCCCCHH-------HHHhhc----C--------------CCC------H------------HHH----------
Confidence            9999999998552       122211    0              000      0            001          


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          174 TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       174 ~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                        .....+++..+..+.    ....+||+|++|.|+|+...|++.|.||.
T Consensus       181 --~~ia~~VL~GL~YLh----~~~~IIHRDIKPsNlLvNskGeVKicDFG  224 (364)
T KOG0581|consen  181 --GKIARAVLRGLSYLH----EERKIIHRDIKPSNLLVNSKGEVKICDFG  224 (364)
T ss_pred             --HHHHHHHHHHHHHHh----hccCeeeccCCHHHeeeccCCCEEecccc
Confidence              011123344444332    24789999999999999888889999985

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=97.85  E-value=0.0001  Score=65.65  Aligned_cols=73  Identities=12%  Similarity=0.004  Sum_probs=45.3

Q ss_pred             eeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++... .+ .|++|+....      ....+..|..+++.+..   -.+++++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~Ey~   77 (328)
T cd05593           2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRH---PFLTSLKYSFQT-KDRLCFVMEYV   77 (328)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCC---CCCcceEEEEEc-CCEEEEEEeCC
Confidence            4677888899998864 33 7888987531      11234456666665532   123444433322 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        78 ~~g~L   82 (328)
T cd05593          78 NGGEL   82 (328)
T ss_pred             CCCCH
Confidence            98643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=97.84  E-value=0.00021  Score=61.00  Aligned_cols=74  Identities=23%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++.++.|..+.+|++...++ .+++|.....  ....+..|..+++.+...   .+++++....  .+..++++++++|.
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~---~i~~~~~~~~--~~~~~~v~e~~~~~   85 (260)
T cd05067          11 VKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHP---RLVRLYAVVT--QEPIYIITEYMENG   85 (260)
T ss_pred             eeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCc---CeeeEEEEEc--cCCcEEEEEcCCCC
Confidence            46788888899999987555 8889977642  234567788888888532   2344443321  45789999999887


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      ++
T Consensus        86 ~L   87 (260)
T cd05067          86 SL   87 (260)
T ss_pred             CH
Confidence            44

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=97.83  E-value=0.00014  Score=64.35  Aligned_cols=74  Identities=14%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             eeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++...+ + .|++|+....      .......|..++..+..+  -.+++++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h--p~iv~~~~~~~~-~~~~~lv~ey~   78 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH--PFLTHLYCTFQT-KENLFFVMEYL   78 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCC--CcCcceEEEEEe-CCEEEEEEeCC
Confidence            46778888999998643 3 6888976531      112234455555444333  234445544333 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~~g~L   83 (316)
T cd05619          79 NGGDL   83 (316)
T ss_pred             CCCcH
Confidence            98744

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=97.83  E-value=0.00014  Score=65.08  Aligned_cols=75  Identities=13%  Similarity=0.021  Sum_probs=49.5

Q ss_pred             eeeeCCccccceEEEEeC-Cc--cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG--SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g--~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ++.+|.|..+.||++... .+  .+.+|....      .....+..|..+++.+..   -.+++++..... .+..+++|
T Consensus        35 ~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~Iv~~~~~~~~-~~~~~lv~  110 (340)
T PTZ00426         35 IRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINH---PFCVNLYGSFKD-ESYLYLVL  110 (340)
T ss_pred             EEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCC---CCCcceEEEEEe-CCEEEEEE
Confidence            577888988999998742 22  688887642      112345678888877753   234455544332 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus       111 Ey~~~g~L  118 (340)
T PTZ00426        111 EFVIGGEF  118 (340)
T ss_pred             eCCCCCcH
Confidence            99998744

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=97.83  E-value=0.00018  Score=61.35  Aligned_cols=75  Identities=20%  Similarity=0.155  Sum_probs=51.6

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.++.|..+.+|+....++ .+++|.....  ....+..|...++.+..   ..+++++..... ....+++|++++|.
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v~e~~~~~   86 (261)
T cd05034          11 ERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRH---DKLVQLYAVCSE-EEPIYIVTEYMSKG   86 (261)
T ss_pred             eeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCC---CCEeeeeeeeec-CCceEEEEeccCCC
Confidence            45678888889999876544 7888877642  23456778888877753   245555554332 46789999999987


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      ++
T Consensus        87 ~L   88 (261)
T cd05034          87 SL   88 (261)
T ss_pred             CH
Confidence            44

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=97.82  E-value=0.00015  Score=64.62  Aligned_cols=75  Identities=13%  Similarity=0.059  Sum_probs=46.2

Q ss_pred             eeeeCCccccceEEEEeCCc--cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDAG--SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++.....  .|.+|+....      ....+..|..++..+..   -.++.++..... .+..+++||
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~lv~e   81 (332)
T cd05623           6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDN---QWITTLHYAFQD-ENNLYLVMD   81 (332)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCC---CCEeeEEEEEec-CCEEEEEEe
Confidence            56788888899999886533  6888886431      11224556655544422   223444433322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        82 y~~~g~L   88 (332)
T cd05623          82 YYVGGDL   88 (332)
T ss_pred             ccCCCcH
Confidence            9998744

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=97.82  E-value=0.00016  Score=61.75  Aligned_cols=76  Identities=14%  Similarity=0.097  Sum_probs=50.3

Q ss_pred             eeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      -.+.++.|..+.+|++....+ .+++|+....  ....+..|...++.+..   --+++++..... .+..+++||+++|
T Consensus         8 ~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~e~~~~   83 (256)
T cd05059           8 FLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSH---PNLVQLYGVCTK-QRPIFIVTEYMAN   83 (256)
T ss_pred             hhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCC---CCEEEEEEEEcC-CCceEEEEecCCC
Confidence            345677888889999876443 7899987642  22345678887777643   234455544332 4678999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        84 ~~L   86 (256)
T cd05059          84 GCL   86 (256)
T ss_pred             CCH
Confidence            744

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=97.81  E-value=0.00023  Score=62.34  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=49.5

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .-++.++.|..+.||++...  +..+++|.....    ....+..|...++.|..   -.+.+++..... .+..++++|
T Consensus         9 ~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~nI~~~~~~~~~-~~~~~lv~e   84 (301)
T cd07873           9 IKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKH---ANIVTLHDIIHT-EKSLTLVFE   84 (301)
T ss_pred             EEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCC---CCcceEEEEEec-CCeEEEEEe
Confidence            34577888888999998764  347888876521    12345678888877753   234555554433 567899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      |++|
T Consensus        85 ~~~~   88 (301)
T cd07873          85 YLDK   88 (301)
T ss_pred             cccc
Confidence            9875

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=97.81  E-value=0.00013  Score=64.46  Aligned_cols=72  Identities=15%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             eCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           30 VGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +|.|..+.||++...+ + .|.+|+....      ....+..|..++..+..  + .+++++..... .+..+++||+++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h--~-~iv~~~~~~~~-~~~~~lv~e~~~   76 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNC--P-FIVPLKFSFQS-PEKLYLVLAFIN   76 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCC--C-cEeceeeEEec-CCeEEEEEcCCC
Confidence            4567778999988643 3 6888876421      11234567777766642  1 23333333222 468899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        77 ~g~L   80 (312)
T cd05585          77 GGEL   80 (312)
T ss_pred             CCcH
Confidence            8743

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=97.81  E-value=0.00014  Score=64.42  Aligned_cols=74  Identities=12%  Similarity=0.024  Sum_probs=48.1

Q ss_pred             eeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++....  ..|.+|+....      ....+..|..++..+..+  -.+++++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h--~~i~~~~~~~~~-~~~~~lv~e~~   78 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKH--PFLTQLHSCFQT-KDRLFFVMEYV   78 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCC--CCccceeeEEEc-CCEEEEEEcCC
Confidence            46777788999988643  37888977531      123345677777666543  245556654332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        79 ~~~~L   83 (318)
T cd05570          79 NGGDL   83 (318)
T ss_pred             CCCCH
Confidence            98744

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=97.81  E-value=0.00031  Score=62.65  Aligned_cols=76  Identities=18%  Similarity=0.037  Sum_probs=51.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.++.|..+.||++... .+ .+++|+....    ....+..|+++++.+..   -.+++++..... .+..+++|||
T Consensus         9 ~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~   84 (333)
T cd06650           9 KISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNS---PYIVGFYGAFYS-DGEISICMEH   84 (333)
T ss_pred             eeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCC---CcccceeEEEEE-CCEEEEEEec
Confidence            3567888888999998875 33 5667765432    12346788888887753   235555554333 5789999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        85 ~~~~~L   90 (333)
T cd06650          85 MDGGSL   90 (333)
T ss_pred             CCCCcH
Confidence            998744

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=97.80  E-value=0.00024  Score=61.66  Aligned_cols=78  Identities=19%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             eeeeeeCCccccceEEEEe-----C-CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCce
Q 022304           25 TKICPVGGGCINLASRYGT-----D-AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGS   93 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~-----~-~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~   93 (299)
                      .-+..++.|..+.+|++..     . +..+++|......    ...+..|+.+++.+...   .+++.+...... ....
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~---~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           7 KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHE---NIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCC---CeeeeeeEEecCCCCce
Confidence            3456788888889998863     1 2368889876421    23466788877777431   233344332221 2467


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++||+++|..+
T Consensus        84 ~lv~e~~~g~~L   95 (284)
T cd05079          84 KLIMEFLPSGSL   95 (284)
T ss_pred             EEEEEccCCCCH
Confidence            899999999754

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=97.80  E-value=0.00018  Score=65.27  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=48.8

Q ss_pred             eeeeeeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++....  ..+.+|+....      ....+..|..+++.+..   -.+++++..... .+..+++
T Consensus        46 ~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~h---p~iv~~~~~~~~-~~~~~lv  121 (371)
T cd05622          46 EVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS---PWVVQLFYAFQD-DRYLYMV  121 (371)
T ss_pred             EEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCC---CCCCeEEEEEEc-CCEEEEE
Confidence            345778888889999998753  37888876421      11234566766665532   223445443322 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+++|..+
T Consensus       122 ~Ey~~gg~L  130 (371)
T cd05622         122 MEYMPGGDL  130 (371)
T ss_pred             EcCCCCCcH
Confidence            999999744

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=97.79  E-value=0.00021  Score=62.26  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=49.1

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.++.|..+.+|++...+  ..+++|.....      ....+..|+..++.+. +  -.+++++..... ....+++||
T Consensus         6 ~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h--~~i~~~~~~~~~-~~~~~~v~e   81 (290)
T cd05580           6 IKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIR-H--PFLVNLYGSFQD-DSNLYLVME   81 (290)
T ss_pred             EEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCC-C--CCccceeeEEEc-CCeEEEEEe
Confidence            4677878888999987643  37888876531      1234566777777775 2  234555544332 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        82 ~~~~~~L   88 (290)
T cd05580          82 YVPGGEL   88 (290)
T ss_pred             cCCCCCH
Confidence            9988643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=97.79  E-value=0.00026  Score=60.58  Aligned_cols=74  Identities=19%  Similarity=0.060  Sum_probs=48.8

Q ss_pred             eeeCCccccceEEEEeCCc-cEEEEecCCCC---------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           28 CPVGGGCINLASRYGTDAG-SFFVKTNRSIG---------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~---------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ..++.|..+.+|+....++ .+++|......         ...+..|.+.++.+..   ..+++.+..... .+..++++
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~   81 (265)
T cd06631           6 EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKH---VNIVQYLGTCLD-DNTISIFM   81 (265)
T ss_pred             ceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCC---CCEeeEeeEeec-CCeEEEEE
Confidence            4577788889999877555 68888654211         1335677777777742   234555544332 46889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|.++
T Consensus        82 e~~~~~~L   89 (265)
T cd06631          82 EFVPGGSI   89 (265)
T ss_pred             ecCCCCcH
Confidence            99999743

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=97.79  E-value=0.00017  Score=61.56  Aligned_cols=74  Identities=22%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      +..++.|..+.+|++...++ .+++|.....  ....+..|..+++.+...   .+.+++....  ....+++|++++|.
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~---~i~~~~~~~~--~~~~~lv~e~~~~~   85 (260)
T cd05070          11 IKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHD---KLVQLYAVVS--EEPIYIVTEYMSKG   85 (260)
T ss_pred             hheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCC---ceEEEEeEEC--CCCcEEEEEecCCC
Confidence            35678888889999986554 7888877642  234567888888887532   2233333221  35679999999886


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      .+
T Consensus        86 ~L   87 (260)
T cd05070          86 SL   87 (260)
T ss_pred             cH
Confidence            43

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=97.79  E-value=0.00041  Score=60.70  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             eeeeeeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           24 ITKICPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -.-++.++.|..+.+|++...  +..+++|.....   ....+..|...++.+..   ..+.+++..... .+..+++|+
T Consensus        21 y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~lv~e   96 (297)
T cd06656          21 YTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKN---PNIVNYLDSYLV-GDELWVVME   96 (297)
T ss_pred             ceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCC---CCEeeEEEEEec-CCEEEEeec
Confidence            344677888888899998752  348888877532   12345567776666532   234445543322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        97 ~~~~~~L  103 (297)
T cd06656          97 YLAGGSL  103 (297)
T ss_pred             ccCCCCH
Confidence            9998743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=97.79  E-value=0.00036  Score=59.38  Aligned_cols=74  Identities=22%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+.++.|..+.+|++...  +..|++|.....    ....+..|...++.+..   -.+++++..... .+..+++++++
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   80 (255)
T cd08219           5 LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKH---PNIVAFKESFEA-DGHLYIVMEYC   80 (255)
T ss_pred             EEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCC---CCcceEEEEEEE-CCEEEEEEeeC
Confidence            467888888899998864  348899976421    12345667777776643   234555544333 56889999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|..
T Consensus        81 ~~~~   84 (255)
T cd08219          81 DGGD   84 (255)
T ss_pred             CCCc
Confidence            9863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=97.79  E-value=0.00034  Score=61.39  Aligned_cols=76  Identities=18%  Similarity=0.052  Sum_probs=48.7

Q ss_pred             eeeeeCCccccceEEEEeCC-----------------c-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccce
Q 022304           26 KICPVGGGCINLASRYGTDA-----------------G-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPF   83 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-----------------g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~   83 (299)
                      -.+.+|.|....||++...+                 + .+.+|+.....    ...+..|+..+..+..   -.+.+++
T Consensus         9 ~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~   85 (304)
T cd05096           9 FKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKD---PNIIRLL   85 (304)
T ss_pred             eeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCC---CCeeEEE
Confidence            34678888889999986421                 1 47888776421    2345678877777642   2344455


Q ss_pred             eecccCCCceEEEEecccCCCC
Q 022304           84 KVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        84 ~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      ..... .+..+++|||++|..+
T Consensus        86 ~~~~~-~~~~~lv~e~~~~~~L  106 (304)
T cd05096          86 GVCVD-EDPLCMITEYMENGDL  106 (304)
T ss_pred             EEEec-CCceEEEEecCCCCcH
Confidence            44332 4678999999988743

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=97.78  E-value=0.00056  Score=57.58  Aligned_cols=75  Identities=16%  Similarity=0.101  Sum_probs=51.4

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ...++.|..+.+|++... ++ .+++|.....   ....+..|.+.++.+..   -.+++++..... ....++++++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~l~~e~~~   80 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKH---PNIVKYYGSYLK-KDELWIVMEFCS   80 (253)
T ss_pred             eeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCC---CCEeEEEEEEec-CCeEEEEEecCC
Confidence            356777878899999875 33 7888988653   22456778877777652   345556654333 467899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |.++
T Consensus        81 ~~~L   84 (253)
T cd05122          81 GGSL   84 (253)
T ss_pred             CCcH
Confidence            8644

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=97.78  E-value=0.00033  Score=59.41  Aligned_cols=73  Identities=19%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             eeCCccccceEEEEeC-----CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           29 PVGGGCINLASRYGTD-----AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~-----~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .++.|....+|++...     ...+.+|+.....    ...+..|++.++.+. +  ..+++++..... .+..+++|++
T Consensus         2 ~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~-~--~~i~~~~~~~~~-~~~~~lv~e~   77 (262)
T cd00192           2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLG-H--PNVVRLLGVCTE-EEPLYLVLEY   77 (262)
T ss_pred             ccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcC-C--CChheeeeeecC-CCceEEEEEe
Confidence            4677777889998875     3378999887532    245667888887775 2  244555554433 5688999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      .+|.++
T Consensus        78 ~~~~~L   83 (262)
T cd00192          78 MEGGDL   83 (262)
T ss_pred             ccCCcH
Confidence            988754

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.78  E-value=0.00039  Score=62.92  Aligned_cols=138  Identities=18%  Similarity=0.126  Sum_probs=84.9

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC--------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI--------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~--------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ...+|.|..+.|+.....  +..+.+|+....        ....+.+|...++.+..+ + -+-+++..-.+ ....+++
T Consensus        22 ~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~H-p-nI~~l~ev~~t-~~~~~iv   98 (370)
T KOG0583|consen   22 GRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSH-P-NIIRLLEVFAT-PTKIYIV   98 (370)
T ss_pred             eeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccC-C-CEeEEEEEEec-CCeEEEE
Confidence            467888888888887652  347888875431        134567899888888755 2 33444444333 4569999


Q ss_pred             EecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHH
Q 022304           97 MEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIY  176 (299)
Q Consensus        97 ~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (299)
                      |||+.|+          +.+-.+.....               ..      +            .   .         ..
T Consensus        99 mEy~~gG----------dL~~~i~~~g~---------------l~------E------------~---~---------ar  123 (370)
T KOG0583|consen   99 MEYCSGG----------DLFDYIVNKGR---------------LK------E------------D---E---------AR  123 (370)
T ss_pred             EEecCCc----------cHHHHHHHcCC---------------CC------h------------H---H---------HH
Confidence            9999884          22333333110               00      0            0   0         01


Q ss_pred             HHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC-CCeEEEccc-cccC
Q 022304          177 QRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN-GEPVILDPA-CYYG  227 (299)
Q Consensus       177 ~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~-~~~~iID~~-~~~g  227 (299)
                      ..+.+++..+....     ..+++|+||++.|+|++.+ +...|+||. +...
T Consensus       124 ~~F~Qlisav~y~H-----~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen  124 KYFRQLISAVAYCH-----SRGIVHRDLKPENILLDGNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             HHHHHHHHHHHHHH-----hCCEeeCCCCHHHEEecCCCCCEEEecccccccc
Confidence            23344444444322     4689999999999999988 778999985 4433

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=97.77  E-value=0.00021  Score=63.52  Aligned_cols=27  Identities=30%  Similarity=0.272  Sum_probs=24.1

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+++|+|++|.|||++.++...|+|+.
T Consensus       115 ~giiHrDlkp~Nili~~~~~~kl~DfG  141 (325)
T cd05602         115 LNIVYRDLKPENILLDSQGHIVLTDFG  141 (325)
T ss_pred             CCeEecCCCHHHeEECCCCCEEEccCC
Confidence            479999999999999988878899974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=97.77  E-value=0.00055  Score=59.51  Aligned_cols=79  Identities=16%  Similarity=0.048  Sum_probs=51.3

Q ss_pred             eeeeeeeCCccccceEEEEeCC--ccEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeeccc-CCCceEEE
Q 022304           24 ITKICPVGGGCINLASRYGTDA--GSFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGAL-PTGGSYII   96 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~-~~~~~~~v   96 (299)
                      ...+++++.|....+|++...+  ..+++|..... .   ...+..|.+.++.+...   .+.+++..... ..+..+++
T Consensus         3 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~~~~~~~~~lv   79 (287)
T cd06621           3 IVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSP---YIVKYYGAFLDESSSSIGIA   79 (287)
T ss_pred             eEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCC---CeeeeeeEEEccCCCeEEEE
Confidence            4567888989888999998743  37888987642 1   23466788777777431   23334432211 13568999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus        80 ~e~~~~~~L   88 (287)
T cd06621          80 MEYCEGGSL   88 (287)
T ss_pred             EEecCCCCH
Confidence            999998744

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=97.77  E-value=0.00025  Score=62.27  Aligned_cols=75  Identities=15%  Similarity=-0.006  Sum_probs=48.5

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.++.|..+.+|+.....  ..+++|......      ...+..|...++.+..   .-+++++..... .+..+++||
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~lv~e   81 (305)
T cd05609           6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAEN---PFVVSMFCSFET-KRHLCMVME   81 (305)
T ss_pred             eeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCC---CCeeeeEEEEec-CCEEEEEEe
Confidence            4677888888899887643  378888765321      2335567776766542   234555544332 457799999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        82 ~~~g~~L   88 (305)
T cd05609          82 YVEGGDC   88 (305)
T ss_pred             cCCCCcH
Confidence            9998643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=97.77  E-value=0.00032  Score=62.26  Aligned_cols=73  Identities=12%  Similarity=-0.013  Sum_probs=45.3

Q ss_pred             eeCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++... +| .|.+|+....   .   ...+..|..+++.+..   -.+.+++..... .+..+++|||+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---p~i~~~~~~~~~-~~~~~lv~e~~   77 (323)
T cd05571           2 LLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRH---PFLTALKYSFQT-HDRLCFVMEYA   77 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCC---CCCCCEEEEEEc-CCEEEEEEeCC
Confidence            4677888899998764 33 7888977531   1   1234456666666642   123444433222 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        78 ~~~~L   82 (323)
T cd05571          78 NGGEL   82 (323)
T ss_pred             CCCcH
Confidence            98643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PHA03212 serine/threonine kinase US3; Provisional

Probab=97.77  E-value=0.00028  Score=64.51  Aligned_cols=70  Identities=11%  Similarity=-0.049  Sum_probs=47.4

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      -++.++.|..+.||++....  ..+++|....   ..+..|+.+++.|..   -.+.+++..... ....+++++++.|
T Consensus        96 ~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~---~~~~~E~~il~~l~H---pnIv~~~~~~~~-~~~~~lv~e~~~~  167 (391)
T PHA03212         96 ILETFTPGAEGFAFACIDNKTCEHVVIKAGQR---GGTATEAHILRAINH---PSIIQLKGTFTY-NKFTCLILPRYKT  167 (391)
T ss_pred             EEEEEcCCCCeEEEEEEECCCCCEEEEechhh---hhhHHHHHHHHhCCC---CCCCCEeEEEEE-CCeeEEEEecCCC
Confidence            35778888889999987643  3778886542   346789999988853   234445543322 4677899998754

>PHA03209 serine/threonine kinase US3; Provisional

Probab=97.76  E-value=0.00027  Score=63.74  Aligned_cols=70  Identities=10%  Similarity=-0.092  Sum_probs=47.8

Q ss_pred             eeeeeCCccccceEEEEeCCc--cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDAG--SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      -+..++.|..+.||++.....  .+++|+....   ....|+.+++.+..   -.+++++..... .+..++++++..|
T Consensus        70 ~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~---~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~~~  141 (357)
T PHA03209         70 VIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG---TTLIEAMLLQNVNH---PSVIRMKDTLVS-GAITCMVLPHYSS  141 (357)
T ss_pred             EEEEecCCCCeEEEEEEECCCCceEEEEeCCcc---ccHHHHHHHHhCCC---CCCcChhheEEe-CCeeEEEEEccCC
Confidence            456788888899999887433  7888986432   23568888887753   235555544332 4578899999865

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=97.76  E-value=0.00035  Score=60.67  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=46.0

Q ss_pred             eeeeCCccccceEEEEeC--Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecc---c-CCCceE
Q 022304           27 ICPVGGGCINLASRYGTD--AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGA---L-PTGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~---~-~~~~~~   94 (299)
                      ++.++.|..+.||++...  ++ .+++|.....     .......|...++.|.....-.+++++....   . ..+..+
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~   85 (290)
T cd07862           6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT   85 (290)
T ss_pred             eeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEE
Confidence            457888888999999752  34 5677866421     1223456888787775321123445554321   1 135689


Q ss_pred             EEEecccC
Q 022304           95 IIMEFIEF  102 (299)
Q Consensus        95 ~v~e~l~G  102 (299)
                      ++||+++|
T Consensus        86 lv~e~~~~   93 (290)
T cd07862          86 LVFEHVDQ   93 (290)
T ss_pred             EEEccCCC
Confidence            99999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=97.76  E-value=0.00044  Score=59.20  Aligned_cols=77  Identities=22%  Similarity=0.142  Sum_probs=49.8

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .-...++.|..+.+|++...  +..+++|......  ...+..|.++++.+..   ..+.+++..... .+..+++|||+
T Consensus         9 ~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   84 (263)
T cd05052           9 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH---PNLVQLLGVCTR-EPPFYIITEFM   84 (263)
T ss_pred             EEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCC---CChhheEEEEcC-CCCcEEEEEeC
Confidence            33466788888889997754  3378889876432  2345678887877743   223444443322 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        85 ~~~~L   89 (263)
T cd05052          85 TYGNL   89 (263)
T ss_pred             CCCcH
Confidence            98744

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=97.76  E-value=0.00032  Score=60.98  Aligned_cols=76  Identities=12%  Similarity=0.034  Sum_probs=48.8

Q ss_pred             eeeeCCccccceEEEEeC----Cc-cEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           27 ICPVGGGCINLASRYGTD----AG-SFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      .+.++.|..+.+|++...    +| .|.+|.....       ....+..|+.+++.+..+  -.++.++..... .+..+
T Consensus         5 ~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~--~~i~~~~~~~~~-~~~~~   81 (290)
T cd05613           5 LKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQS--PFLVTLHYAFQT-DTKLH   81 (290)
T ss_pred             eeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccC--CChhceeeEeec-CCeEE
Confidence            356788888899998752    33 6888877531       123456788888877654  234444433222 45778


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      +++|+++|..+
T Consensus        82 lv~e~~~~~~L   92 (290)
T cd05613          82 LILDYINGGEL   92 (290)
T ss_pred             EEEecCCCCcH
Confidence            99999998643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=97.75  E-value=0.00029  Score=61.12  Aligned_cols=73  Identities=14%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +..++.|..+.+|++.... + .+.+|.....     ....+..|..+++.+...   .+.+++..... .+..+++|||
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---~iv~~~~~~~~-~~~~~lv~e~   81 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE---NIVELKEAFRR-RGKLYLVFEY   81 (287)
T ss_pred             EEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCc---cccchhhhEec-CCEEEEEEec
Confidence            4567888888999998743 3 6888876531     123456788888777532   22333332222 4688999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      ++|.
T Consensus        82 ~~~~   85 (287)
T cd07848          82 VEKN   85 (287)
T ss_pred             CCCC
Confidence            9875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=97.75  E-value=0.00018  Score=63.25  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=48.3

Q ss_pred             eeeCCccccceEEEEeC-Cc-c--EEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTD-AG-S--FFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~--~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +.+|.|..+.+|++... ++ .  +.+|.....    ....+..|...+..+..+  -.+++++..... .+..+++|||
T Consensus        13 ~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h--~~iv~~~~~~~~-~~~~~lv~e~   89 (303)
T cd05088          13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH--PNIINLLGACEH-RGYLYLAIEY   89 (303)
T ss_pred             eeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCC--CCcceEEEEECC-CCCceEEEEe
Confidence            56788888899999753 23 3  344544321    123456788888888544  245666655443 5689999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|.+
T Consensus        90 ~~~~~   94 (303)
T cd05088          90 APHGN   94 (303)
T ss_pred             CCCCc
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>PHA03211 serine/threonine kinase US3; Provisional

Probab=97.75  E-value=0.00038  Score=65.04  Aligned_cols=69  Identities=12%  Similarity=-0.022  Sum_probs=48.0

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ...++.|..+.||+....+  ..+++|....   .....|+++++.|..   -.+.+++..... .+..+++|++..|
T Consensus       174 ~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~---~~~~~E~~iL~~L~H---pnIv~l~~~~~~-~~~~~lv~e~~~~  244 (461)
T PHA03211        174 HRALTPGSEGCVFESSHPDYPQRVVVKAGWY---ASSVHEARLLRRLSH---PAVLALLDVRVV-GGLTCLVLPKYRS  244 (461)
T ss_pred             EEEEccCCCeEEEEEEECCCCCEEEEecccc---cCHHHHHHHHHHCCC---CCCCcEEEEEEE-CCEEEEEEEccCC
Confidence            4567888889999988754  2688886432   235689999988853   245556654433 5678999998865

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=97.74  E-value=0.0003  Score=62.33  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.||+++.++.+.|+|+.
T Consensus       115 ~~ivH~Dlkp~NIll~~~~~~kl~Dfg  141 (321)
T cd05603         115 LNIIYRDLKPENILLDSQGHVVLTDFG  141 (321)
T ss_pred             CCeEeccCCHHHeEECCCCCEEEccCC
Confidence            479999999999999988888999975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=97.73  E-value=0.0002  Score=62.69  Aligned_cols=133  Identities=16%  Similarity=0.252  Sum_probs=84.5

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +.-+|-|....||.|.-.+ + -|-+|.-..      .......+|..+|..+..  ++-|.-.+.+..  .+.-|+|++
T Consensus        30 lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~h--PFiv~l~ysFQt--~~kLylVld  105 (357)
T KOG0598|consen   30 LKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKH--PFIVKLIYSFQT--EEKLYLVLD  105 (357)
T ss_pred             eeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCC--CcEeeeEEeccc--CCeEEEEEe
Confidence            4567888889999998753 3 466665432      123456788888888643  677776666654  478999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |+.|+.+          .  +|-...             |      .+.++-..||..                      
T Consensus       106 ~~~GGeL----------f--~hL~~e-------------g------~F~E~~arfYla----------------------  132 (357)
T KOG0598|consen  106 YLNGGEL----------F--YHLQRE-------------G------RFSEDRARFYLA----------------------  132 (357)
T ss_pred             ccCCccH----------H--HHHHhc-------------C------CcchhHHHHHHH----------------------
Confidence            9999754          1  222211             0      011222223321                      


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                        +++-.+..+.     ...+||+|++|+|||+|.+|...+-|+.
T Consensus       133 --Ei~lAL~~LH-----~~gIiyRDlKPENILLd~~GHi~LtDFg  170 (357)
T KOG0598|consen  133 --EIVLALGYLH-----SKGIIYRDLKPENILLDEQGHIKLTDFG  170 (357)
T ss_pred             --HHHHHHHHHH-----hCCeeeccCCHHHeeecCCCcEEEeccc
Confidence              1122222222     4689999999999999999988999975

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=97.72  E-value=0.00035  Score=62.04  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=24.3

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.|||++.++...|+|+.
T Consensus       115 ~givH~Dlkp~NIll~~~~~~kL~DfG  141 (325)
T cd05604         115 INIVYRDLKPENILLDSQGHVVLTDFG  141 (325)
T ss_pred             CCeeecCCCHHHeEECCCCCEEEeecC
Confidence            479999999999999988888899975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=97.72  E-value=0.00016  Score=62.77  Aligned_cols=72  Identities=13%  Similarity=-0.031  Sum_probs=44.3

Q ss_pred             eCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           30 VGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++.|..+.||++... .+ .|.+|.....   .   ...+..|..+++.+...   .+.++...... .+..+++||+++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~---~i~~~~~~~~~-~~~~~lv~e~~~   76 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSR---FIVSLAYAFQT-KTDLCLVMTIMN   76 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCC---cEeeeeEEEcC-CCeEEEEEeCCC
Confidence            456777899998763 33 7888876531   1   12345677777777431   23333332222 467899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        77 ~g~L   80 (280)
T cd05608          77 GGDL   80 (280)
T ss_pred             CCCH
Confidence            9754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=97.71  E-value=0.00049  Score=58.74  Aligned_cols=75  Identities=17%  Similarity=0.002  Sum_probs=48.1

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCCC--------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSIG--------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~--------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .+.++.|..+.+|++...  +..+.+|..+...        ...+..|...++.+..   -.+.+++..... ....+++
T Consensus         7 ~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~~v   82 (263)
T cd06625           7 GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQH---ERIVQYYGCLRD-DETLSIF   82 (263)
T ss_pred             cceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCC---CCeeeeEEEEcc-CCeEEEE
Confidence            356788888889998753  2378888765311        1235667777777643   123445544333 4688999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      +|+++|..+
T Consensus        83 ~e~~~~~~l   91 (263)
T cd06625          83 MEYMPGGSV   91 (263)
T ss_pred             EEECCCCcH
Confidence            999988743

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=97.71  E-value=0.0006  Score=60.02  Aligned_cols=76  Identities=17%  Similarity=0.011  Sum_probs=50.1

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -.+.++.|..+.||++.... + .+++|......    ...+..|+++++.+..   -.+.+++..... .+..++++||
T Consensus         5 ~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~ey   80 (308)
T cd06615           5 KLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNS---PYIVGFYGAFYS-DGEISICMEH   80 (308)
T ss_pred             EEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCC---CCCCeEEEEEee-CCEEEEEeec
Confidence            45678888888999987643 3 67777765321    2335678888877743   234455544332 5788999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        81 ~~~~~L   86 (308)
T cd06615          81 MDGGSL   86 (308)
T ss_pred             cCCCcH
Confidence            998744

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=97.71  E-value=0.00049  Score=58.73  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=50.1

Q ss_pred             eeeeeCCccccceEEEEeCCc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTDAG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      -.+.++.|..+.+|.....++ .+.+|......  ...+..|...++.+..   -.+++++..... ....+++||++.|
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~~~   83 (256)
T cd05113           8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSH---EKLVQLYGVCTK-QRPIYIVTEYMSN   83 (256)
T ss_pred             EeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCC---CCeeeEEEEEcc-CCCcEEEEEcCCC
Confidence            346788888889999876544 68889765422  2345677777776642   234555554432 4567999999988


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        84 ~~l   86 (256)
T cd05113          84 GCL   86 (256)
T ss_pred             CcH
Confidence            643

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=97.71  E-value=0.00024  Score=60.80  Aligned_cols=75  Identities=12%  Similarity=-0.030  Sum_probs=47.8

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCC-C--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRS-I--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~-~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.++.|..+.+|++...  +..+++|.... .  .   ...+..|..+++.+..   -.+++++..... .+..+++++
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v~e   82 (267)
T cd08228           7 EKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNH---PNVIKYLDSFIE-DNELNIVLE   82 (267)
T ss_pred             eeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCC---cceeeeeeeEEE-CCeEEEEEE
Confidence            356788888899998863  34788886542 1  1   1235568877777743   234445543322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        83 ~~~~~~L   89 (267)
T cd08228          83 LADAGDL   89 (267)
T ss_pred             ecCCCcH
Confidence            9998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=97.70  E-value=0.00044  Score=60.11  Aligned_cols=76  Identities=12%  Similarity=0.054  Sum_probs=48.4

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .++.+|.|..+.||++... ++ .|.+|.....      ....+..|..+++.+...   .+..++..... .+..+++|
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~---~iv~~~~~~~~-~~~~~lv~   79 (285)
T cd05631           4 HYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSR---FVVSLAYAYET-KDALCLVL   79 (285)
T ss_pred             EEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCC---cEEEEEEEEcc-CCeEEEEE
Confidence            4567888888999998763 33 7888876431      112345678777777532   22333332222 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ++++|..+
T Consensus        80 e~~~~g~L   87 (285)
T cd05631          80 TIMNGGDL   87 (285)
T ss_pred             EecCCCcH
Confidence            99998744

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.70  E-value=7.9e-05  Score=68.57  Aligned_cols=71  Identities=13%  Similarity=0.097  Sum_probs=51.8

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEE-ecC----CCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVK-TNR----SIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK-~~~----~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +..+|.|.++.||+|...+. -|++| +.-    .....-+..|+..|..|..+  ..+-++|.+.-+ +|..|||||+=
T Consensus       366 lk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~--~~IIqL~DYEv~-d~~lYmvmE~G  442 (677)
T KOG0596|consen  366 LKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGH--DKIIQLYDYEVT-DGYLYMVMECG  442 (677)
T ss_pred             HHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCC--ceEEEEeeeecc-CceEEEEeecc
Confidence            56788899999999987654 45444 322    12234578899999999875  677888877655 78999999963

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=97.70  E-value=0.00046  Score=58.97  Aligned_cols=78  Identities=21%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.=.+.++.|..+.+|++...++ .+++|......  ...+..|..+++.+...   .+.+++....  ....+++|++
T Consensus         7 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~---~i~~~~~~~~--~~~~~~v~e~   81 (260)
T cd05073           7 SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHD---KLVKLHAVVT--KEPIYIITEF   81 (260)
T ss_pred             ceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCC---CcceEEEEEc--CCCeEEEEEe
Confidence            334456788888899999986544 78888776432  24566788888777532   2222333222  3567999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        82 ~~~~~L   87 (260)
T cd05073          82 MAKGSL   87 (260)
T ss_pred             CCCCcH
Confidence            988643

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=97.70  E-value=0.00019  Score=61.75  Aligned_cols=75  Identities=11%  Similarity=0.038  Sum_probs=49.1

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +.++.|..+.+|++...  +..+++|+....      ....+..|...++.+..+  -.+++++..... .+..+++|++
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~--~~i~~~~~~~~~-~~~~~lv~e~   83 (280)
T cd05581           7 KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGH--PGIIKLYYTFQD-EENLYFVLEY   83 (280)
T ss_pred             eeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccC--CCchhHHHHhcC-CceEEEEEcC
Confidence            56788888899998874  337888987531      123456677777777522  234555544322 4688999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|.++
T Consensus        84 ~~~~~L   89 (280)
T cd05581          84 APNGEL   89 (280)
T ss_pred             CCCCcH
Confidence            988744

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=97.70  E-value=0.00069  Score=58.04  Aligned_cols=77  Identities=13%  Similarity=0.037  Sum_probs=51.1

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~~~v~   97 (299)
                      .+.++.|..+.+|++....  ..+++|+.....  ...+..|..+++.+..+  -.+++++......     ....+++|
T Consensus        11 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h--~~i~~~~~~~~~~~~~~~~~~~~lv~   88 (275)
T cd06608          11 VEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNH--PNIATFYGAFIKKNPPGNDDQLWLVM   88 (275)
T ss_pred             eeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCC--CChheEEEEEEecCCCCcceEEEEEE
Confidence            4667778778899988742  378888876432  24567888888887554  3455565443210     23579999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ++++|..+
T Consensus        89 e~~~~~~L   96 (275)
T cd06608          89 ELCGGGSV   96 (275)
T ss_pred             EcCCCCcH
Confidence            99998743

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=97.70  E-value=0.00068  Score=57.62  Aligned_cols=77  Identities=19%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             eeeeeeCCccccceEEEEeC-CccEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           25 TKICPVGGGCINLASRYGTD-AGSFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      .-.+.++.|..+.+|++... +..+.+|.....  ....+..|.+.++.+..   ..+++++..... .+..++++++++
T Consensus         7 ~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~~v~e~~~   82 (256)
T cd05112           7 TLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSH---PKLVQLYGVCTE-RSPICLVFEFME   82 (256)
T ss_pred             EEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCC---CCeeeEEEEEcc-CCceEEEEEcCC
Confidence            33567888888899998765 347888977642  22456778888887753   234445544332 467899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        83 ~~~L   86 (256)
T cd05112          83 HGCL   86 (256)
T ss_pred             CCcH
Confidence            8743

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=0.00047  Score=61.49  Aligned_cols=72  Identities=18%  Similarity=0.299  Sum_probs=44.6

Q ss_pred             eeeCCccccceEEE-EeCCc-cEEEEecCCC-----C-----cchHHHHHHHHHHHHhcCCCCCccceeecc-cC-CCce
Q 022304           28 CPVGGGCINLASRY-GTDAG-SFFVKTNRSI-----G-----PSMFEGEALGLGAMYETRTIRAPRPFKVGA-LP-TGGS   93 (299)
Q Consensus        28 ~~~~~G~~n~~y~v-~~~~g-~~vlK~~~~~-----~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~-~~-~~~~   93 (299)
                      +.+|.|....|-.. +...| .|.+||....     .     ...+++|.++|+.|+.      |.++..-+ .. ....
T Consensus       178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~H------P~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSH------PNIVRIKDFFEVPDSS  251 (475)
T ss_pred             eeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCC------CCEEEEeeeeecCCce
Confidence            45677765554432 23344 6888887531     1     1225789999988864      56664322 11 4567


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      ||||||++|+.+
T Consensus       252 YmVlE~v~GGeL  263 (475)
T KOG0615|consen  252 YMVLEYVEGGEL  263 (475)
T ss_pred             EEEEEEecCccH
Confidence            999999999743

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=97.69  E-value=0.00036  Score=63.34  Aligned_cols=77  Identities=13%  Similarity=0.063  Sum_probs=51.9

Q ss_pred             eeeeeCCccccceEEEEe---CC----ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGT---DA----GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~---~~----g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -.+.++.|..+.||++..   .+    ..|.+|......    ...+..|.++++.+..+  -.+++++..... .+..+
T Consensus        42 ~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h--~nIv~~~~~~~~-~~~~~  118 (374)
T cd05106          42 FGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQH--KNIVNLLGACTH-GGPVL  118 (374)
T ss_pred             ehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccC--CceeeEeeEecC-CCCeE
Confidence            356788888889998763   11    158888775321    23466788888888544  245566655433 46789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|..+
T Consensus       119 lv~ey~~~g~L  129 (374)
T cd05106         119 VITEYCCYGDL  129 (374)
T ss_pred             EeHhhccCCcH
Confidence            99999999765

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=97.69  E-value=0.0012  Score=57.64  Aligned_cols=94  Identities=14%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             cchHHHHHHhc-CCCc---ceeeeeeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCC
Q 022304            8 DDPIREWILSE-GKAT---HITKICPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIR   78 (299)
Q Consensus         8 ~~~i~~~l~~~-~~~~---~~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~   78 (299)
                      .+++.+-|... ..+.   ...-++.++.|..+.+|++...  +..+.+|.....   ....+..|..+++.+..   ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h---~~   78 (296)
T cd06654           2 DEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN---PN   78 (296)
T ss_pred             hHHHHHHHHhccccCCcccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCC---CC
Confidence            34555555444 2332   3334567888888999998753  337888866532   12345667777766542   23


Q ss_pred             CccceeecccCCCceEEEEecccCCCC
Q 022304           79 APRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        79 vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +.+++..... ....+++++|++|..+
T Consensus        79 v~~~~~~~~~-~~~~~lv~e~~~~~~L  104 (296)
T cd06654          79 IVNYLDSYLV-GDELWVVMEYLAGGSL  104 (296)
T ss_pred             EeeEEEEEEe-CCEEEEeecccCCCCH
Confidence            4444433222 4688999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=97.69  E-value=0.00085  Score=58.35  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=51.3

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~v   96 (299)
                      .-++.++.|..+.+|++... ++ .+++|.....  ....+..|...++.+..+  -.+++++......    .+..+++
T Consensus        25 ~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h--~ni~~~~~~~~~~~~~~~~~~~lv  102 (291)
T cd06639          25 EIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNH--PNVVKFYGMFYKADKLVGGQLWLV  102 (291)
T ss_pred             EEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCC--CCeEEEEEEEEeccccCCCeeEEE
Confidence            34567788888899998874 33 6888887542  224466788877777544  2455555432211    2468999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      +||++|..+
T Consensus       103 ~ey~~~~sL  111 (291)
T cd06639         103 LELCNGGSV  111 (291)
T ss_pred             EEECCCCcH
Confidence            999998743

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=97.68  E-value=0.00065  Score=58.90  Aligned_cols=76  Identities=16%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEE
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~   95 (299)
                      ++.+|.|..+.||++...+ + .+++|.....     .......|...++.|.....-.+.+++......    ....++
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~l   84 (288)
T cd07863           5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTL   84 (288)
T ss_pred             eeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEE
Confidence            3567888889999997643 3 6788876531     122355788888887642112344444432211    245789


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +++++++
T Consensus        85 v~e~~~~   91 (288)
T cd07863          85 VFEHVDQ   91 (288)
T ss_pred             EEccccc
Confidence            9999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=97.67  E-value=0.00052  Score=59.26  Aligned_cols=74  Identities=14%  Similarity=0.025  Sum_probs=49.0

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCCCCc---chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRSIGP---SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~~---~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      +.++.|..+.+|++...  +..+++|.......   ..+..|+.+++.+. +  -.+++++..... .+..+++||+++|
T Consensus        11 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~-h--~~i~~~~~~~~~-~~~~~lv~e~~~~   86 (280)
T cd06611          11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECK-H--PNIVGLYEAYFY-ENKLWILIEFCDG   86 (280)
T ss_pred             HHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCC-C--CceeEEEEEEec-CCeEEEEeeccCC
Confidence            45677878899999864  23788898764321   23556777777775 2  235555554333 5678999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        87 ~~L   89 (280)
T cd06611          87 GAL   89 (280)
T ss_pred             CcH
Confidence            744

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=97.67  E-value=0.00041  Score=60.51  Aligned_cols=149  Identities=20%  Similarity=0.212  Sum_probs=86.9

Q ss_pred             eeeeeeCCccccceEEEEe-CCc-cEEEEecCC--C---CcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCc
Q 022304           25 TKICPVGGGCINLASRYGT-DAG-SFFVKTNRS--I---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGG   92 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~--~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~   92 (299)
                      ..++++|.|....||+... ..| -+++|.-+-  .   .+....+|+.+++.|+...  .+-+++....+.     .+.
T Consensus        14 ~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~--~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   14 EKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHAN--HIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCc--ceEEEEeeeeecccccccce
Confidence            4577899999999999876 334 677775542  1   2344568999999997642  233344332221     246


Q ss_pred             eEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCC
Q 022304           93 SYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGD  172 (299)
Q Consensus        93 ~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (299)
                      -++++|+++-.        +-..+..+-...     .|.+                .       ..+             
T Consensus        92 l~lvfe~~d~D--------L~~ymd~~~~~~-----~g~~----------------~-------~~i-------------  122 (323)
T KOG0594|consen   92 LYLVFEFLDRD--------LKKYMDSLPKKP-----QGLP----------------P-------RLI-------------  122 (323)
T ss_pred             EEEEEEeeccc--------HHHHHHhccccc-----cCCC----------------H-------HHH-------------
Confidence            78899988653        222222211000     0100                0       000             


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-c-ccCCchhh
Q 022304          173 STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-C-YYGHNEAE  232 (299)
Q Consensus       173 ~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~-~~g~~~~D  232 (299)
                         ...+.+++..+.-. .    ..+++|+|++|.|+|++++|...|+||. + .++-|.-.
T Consensus       123 ---k~~m~Qll~gl~~~-H----~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~  176 (323)
T KOG0594|consen  123 ---KSFMRQLLRGLAFL-H----SHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRT  176 (323)
T ss_pred             ---HHHHHHHHHHHHHH-H----hCCeecccCCcceEEECCCCcEeeeccchHHHhcCCccc
Confidence               12223344433322 2    4699999999999999999888999985 3 46645443

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=97.67  E-value=0.00089  Score=56.63  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=48.8

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.++.|..+.+|++...  +..|++|.....     ....+..|.++++.+..   ..+++++..... .+..++++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~~~~~~~~~~~-~~~~~lv~e~   80 (258)
T cd08215           5 IKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNH---PNIIKYYESFEE-KGKLCIVMEY   80 (258)
T ss_pred             EeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCC---CChhheEEEEec-CCEEEEEEEe
Confidence            356777777899998875  348889887642     12345677777777652   223444433222 4688999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        81 ~~~~~L   86 (258)
T cd08215          81 ADGGDL   86 (258)
T ss_pred             cCCCcH
Confidence            998743

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=97.67  E-value=0.00045  Score=58.79  Aligned_cols=71  Identities=13%  Similarity=0.066  Sum_probs=45.0

Q ss_pred             CCccccceEEEEeCC-c-cEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           31 GGGCINLASRYGTDA-G-SFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        31 ~~G~~n~~y~v~~~~-g-~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      +.|..+.+|++...+ | .+++|......      ...+..|...++.+..   ..+++++..... ....++++++++|
T Consensus         2 g~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~lv~e~~~~   77 (265)
T cd05579           2 SKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQS---PYVVKLYYSFQG-KKNLYLVMEYLPG   77 (265)
T ss_pred             CCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCC---cchhHHHHheec-CcEEEEEEecCCC
Confidence            556677899998753 3 89999876421      2345566666666642   234444433222 4578999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      .++
T Consensus        78 ~~L   80 (265)
T cd05579          78 GDL   80 (265)
T ss_pred             CcH
Confidence            644

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.67  E-value=0.00067  Score=58.53  Aligned_cols=77  Identities=25%  Similarity=0.183  Sum_probs=49.5

Q ss_pred             eeeeeCCccccceEEEEeC------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceE
Q 022304           26 KICPVGGGCINLASRYGTD------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~   94 (299)
                      -++.++.|..+.+|++...      +..+++|......    ...+..|...++.+..   ..+++++...... ....+
T Consensus         8 ~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~---~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           8 FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDH---ENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCC---CChheEEeeeecCCCCceE
Confidence            3467888888999998753      2278899876532    2346777777776642   2344555443221 23679


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|..+
T Consensus        85 lv~e~~~~~~l   95 (284)
T cd05038          85 LIMEYLPSGSL   95 (284)
T ss_pred             EEEecCCCCCH
Confidence            99999988744

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>PHA03207 serine/threonine kinase US3; Provisional

Probab=97.67  E-value=0.00042  Score=63.33  Aligned_cols=71  Identities=8%  Similarity=-0.083  Sum_probs=47.3

Q ss_pred             eeeeeCCccccceEEEEeCC----ccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           26 KICPVGGGCINLASRYGTDA----GSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~----g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      -+..++.|....||++...+    ..+++|.....  ....+|..+++.|..   -.+++++..... ....+++|++..
T Consensus        96 i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~--~~~~~E~~il~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~~  169 (392)
T PHA03207         96 ILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG--KTPGREIDILKTISH---RAIINLIHAYRW-KSTVCMVMPKYK  169 (392)
T ss_pred             EEEeecCCCCeEEEEEEEcCCccceeEEEEecccc--ccHHHHHHHHHhcCC---CCccceeeeEee-CCEEEEEehhcC
Confidence            35678889889999986532    26788876542  235689999988853   234455543322 457899999886


Q ss_pred             C
Q 022304          102 F  102 (299)
Q Consensus       102 G  102 (299)
                      +
T Consensus       170 ~  170 (392)
T PHA03207        170 C  170 (392)
T ss_pred             C
Confidence            5

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=97.66  E-value=0.00057  Score=59.29  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=50.8

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      -...++.|....+|++...  +..+++|......  ...+..|.+.++.+..   ..+++++..... ....++++++++
T Consensus        23 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~e~~~   98 (286)
T cd06614          23 NLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKH---PNIVDYYDSYLV-GDELWVVMEYMD   98 (286)
T ss_pred             HhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCC---CCeeEEEEEEEE-CCEEEEEEeccC
Confidence            3466787877889998875  4488999876432  3345678877776643   234445543322 468899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        99 ~~~L  102 (286)
T cd06614          99 GGSL  102 (286)
T ss_pred             CCcH
Confidence            8644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=97.66  E-value=0.00078  Score=60.35  Aligned_cols=80  Identities=18%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             eeeeeeeCCccccceEEEEe------CCc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           24 ITKICPVGGGCINLASRYGT------DAG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~------~~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ..-.+.+|.|..+.||++..      ..+ .+.+|+.....    ...+..|..++..+..+  -.+++++.......+.
T Consensus         9 ~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~niv~~~~~~~~~~~~   86 (343)
T cd05103           9 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH--LNVVNLLGACTKPGGP   86 (343)
T ss_pred             hcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCC--ccHhhhcceeecCCCc
Confidence            33456788898899999862      122 68888875421    12356788888888543  2345555433221346


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++|||++|..+
T Consensus        87 ~~lv~ey~~~g~L   99 (343)
T cd05103          87 LMVIVEFCKFGNL   99 (343)
T ss_pred             eEEEEeccCCCcH
Confidence            7899999999765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=97.65  E-value=0.00046  Score=61.38  Aligned_cols=27  Identities=26%  Similarity=0.193  Sum_probs=24.2

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.|||++.++.+.|+|+.
T Consensus       115 ~~ivHrDlkp~Nili~~~~~~kl~Dfg  141 (330)
T cd05586         115 YDIVYRDLKPENILLDATGHIALCDFG  141 (330)
T ss_pred             CCeEeccCCHHHeEECCCCCEEEecCC
Confidence            479999999999999988888899974

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=97.65  E-value=0.00062  Score=57.91  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             eeeCCccccceEEEEeC-C-ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTD-A-GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~   99 (299)
                      ..++.|..+.+|++... . ..+++|.....     ....+..|...++.+...   .+++++...... ....++++|+
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~i~~~~~~~~~~~~~~~~~~~e~   82 (265)
T cd08217           6 ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHP---NIVRYYDRIIDRSNQTLYIVMEY   82 (265)
T ss_pred             eeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCC---ccceeeeeeecCCCCEEEEEehh
Confidence            46777878899998763 2 36888876431     123355677777666432   234444322211 3467899999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|.++
T Consensus        83 ~~~~~L   88 (265)
T cd08217          83 CEGGDL   88 (265)
T ss_pred             ccCCCH
Confidence            998744

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.65  E-value=0.00058  Score=59.14  Aligned_cols=77  Identities=19%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             eeeeeCCccccceEEEEe-----CCc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEE
Q 022304           26 KICPVGGGCINLASRYGT-----DAG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~-----~~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~   95 (299)
                      -++.++.|..+.+|++..     ..+ .+++|......   ...+..|.++++.+..   -.+++.+...... ....++
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~~~~~~~~l   84 (284)
T cd05081           8 FIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQH---DNIVKYKGVCYSAGRRNLRL   84 (284)
T ss_pred             eeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCC---CCeeEEEEEEccCCCCceEE
Confidence            356788888889999763     123 68888875432   2346678887777742   2344444432211 346789


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      ++||++|.++
T Consensus        85 v~e~~~~~~L   94 (284)
T cd05081          85 VMEYLPYGSL   94 (284)
T ss_pred             EEEecCCCCH
Confidence            9999998754

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=97.64  E-value=0.00038  Score=59.46  Aligned_cols=75  Identities=12%  Similarity=-0.013  Sum_probs=48.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.++.|..+.+|++... +| .+++|....      .....+..|+..++.+..   ..+++++..... .+..+++||
T Consensus         7 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~---~~i~~~~~~~~~-~~~~~lv~e   82 (267)
T cd08224           7 EKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDH---PNVIKYLASFIE-NNELNIVLE   82 (267)
T ss_pred             eeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCC---CCeeeeeeeeec-CCeEEEEEe
Confidence            356788888899998875 33 788886542      113446678877777643   234444443322 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|.++
T Consensus        83 ~~~~~~L   89 (267)
T cd08224          83 LADAGDL   89 (267)
T ss_pred             cCCCCCH
Confidence            9998744

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=97.64  E-value=0.0009  Score=60.29  Aligned_cols=75  Identities=19%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             eeeCCccccceEEEEeCCcc-EEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           28 CPVGGGCINLASRYGTDAGS-FFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g~-~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +.+|.|....||+..-.+.. +.+|+.....     ...+..|+.++..|+.-   .|-+.+.......+...+||||++
T Consensus        47 ~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~Hp---NIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHP---NIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCC---CeeeEEEEEcCCCCceEEEEEeCC
Confidence            34788888999988776665 7888876422     23688899988887541   223344443321235799999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |+.+
T Consensus       124 ~GsL  127 (362)
T KOG0192|consen  124 GGSL  127 (362)
T ss_pred             CCcH
Confidence            9744

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=97.63  E-value=0.00067  Score=58.29  Aligned_cols=75  Identities=16%  Similarity=0.068  Sum_probs=49.1

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC----Cc---------chHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GP---------SMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~---------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      .+.++.|..+.+|+.... ++ .+.+|.....    ..         ..+..|...++.+..   ..+++++..... ..
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~   81 (272)
T cd06629           6 GELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH---LNIVQYLGFETT-EE   81 (272)
T ss_pred             cceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCC---CCcceEEEEecc-CC
Confidence            457888888899998653 34 7888865421    01         235567777777742   235566655443 46


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..++++|+++|.++
T Consensus        82 ~~~lv~e~~~~~~L   95 (272)
T cd06629          82 YLSIFLEYVPGGSI   95 (272)
T ss_pred             ceEEEEecCCCCcH
Confidence            78999999998744

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=97.63  E-value=0.00099  Score=57.91  Aligned_cols=74  Identities=11%  Similarity=-0.008  Sum_probs=49.0

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .-++.++.|..+.||++...  ++.+++|......    ...+..|...++.+..   ..+++++..... .+..++++|
T Consensus         8 ~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h---~ni~~~~~~~~~-~~~~~lv~e   83 (291)
T cd07870           8 LNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKH---ANIVLLHDIIHT-KETLTFVFE   83 (291)
T ss_pred             EEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCC---CCEeEEEEEEec-CCeEEEEEe
Confidence            34567888888899998653  4489999875321    1245678887777743   234455544332 467899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      ++++
T Consensus        84 ~~~~   87 (291)
T cd07870          84 YMHT   87 (291)
T ss_pred             cccC
Confidence            9965

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=97.63  E-value=0.00066  Score=58.52  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.++.|..+.+|++... ++ .+++|......     ...+..|...++.+..   -.+.+++..... ....++++|+
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~~v~e~   79 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNH---PNIIKLLDVFRH-KGDLYLVFEF   79 (283)
T ss_pred             ceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcC---CCcchHHHhhcc-CCCEEEEEec
Confidence            356777878899998764 33 78888765421     2345667777777752   234444433322 4678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      .++
T Consensus        80 ~~~   82 (283)
T cd05118          80 MDT   82 (283)
T ss_pred             cCC
Confidence            876

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=97.62  E-value=0.00057  Score=59.09  Aligned_cols=72  Identities=19%  Similarity=0.121  Sum_probs=47.9

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.++.|..+.+|+++..  +..+++|.....     ....+..|+..++.+..   -.+++++..... .+..+++|+|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v~e~   80 (285)
T cd07861           5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQH---PNIVCLQDVLMQ-ESRLYLIFEF   80 (285)
T ss_pred             eeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCC---CCEeeeEEEEee-CCeEEEEEec
Confidence            467888888899999864  237888876531     12346678887777752   234555544332 4678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        81 ~~~   83 (285)
T cd07861          81 LSM   83 (285)
T ss_pred             CCC
Confidence            975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=97.62  E-value=0.00055  Score=59.73  Aligned_cols=72  Identities=11%  Similarity=-0.031  Sum_probs=45.3

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCCCc--------chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSIGP--------SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~~--------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .+.++.|..+.+|+....  +..+++|.......        ..+..|+..++.+..   ..+.+++..... ....+++
T Consensus         5 ~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~lv   80 (298)
T cd07841           5 GKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKH---PNIIGLLDVFGH-KSNINLV   80 (298)
T ss_pred             eeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCC---CCChhhhheeec-CCEEEEE
Confidence            346788888899998753  33889988764211        123457776766642   234444443332 4678999


Q ss_pred             EecccCC
Q 022304           97 MEFIEFG  103 (299)
Q Consensus        97 ~e~l~G~  103 (299)
                      ||++ +.
T Consensus        81 ~e~~-~~   86 (298)
T cd07841          81 FEFM-ET   86 (298)
T ss_pred             Eccc-CC
Confidence            9999 44

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=97.62  E-value=0.0015  Score=55.14  Aligned_cols=74  Identities=16%  Similarity=0.032  Sum_probs=49.3

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.++.|....+|+.....  ..|++|......     ...+..|.+.+..+..   ..+++++..... .+..++++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~~v~e~   80 (254)
T cd06627           5 GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKH---PNIVKYIGSIET-SDSLYIILEY   80 (254)
T ss_pred             eeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCC---CCccEEEEEEEe-CCEEEEEEec
Confidence            4677888888999987642  378999886532     2345677777777643   234455544332 4678999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|..
T Consensus        81 ~~~~~   85 (254)
T cd06627          81 AENGS   85 (254)
T ss_pred             CCCCc
Confidence            98863

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=97.61  E-value=0.0016  Score=56.58  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=50.7

Q ss_pred             ceeeeeeeCCccccceEEEEeC-C-ccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           23 HITKICPVGGGCINLASRYGTD-A-GSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .......++.|..+.+|+.... + ..+++|.....   ....+..|...++.+..   -.+.+++..... .+..++++
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h---~~vv~~~~~~~~-~~~~~~v~   95 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQH---PNIVEMYSSYLV-GDELWVVM   95 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCC---CChheEEEEEEc-CCeEEEEE
Confidence            4556788999988999998753 3 37888866421   12335567766666642   234445543222 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ++++|..+
T Consensus        96 e~~~~~~L  103 (285)
T cd06648          96 EFLEGGAL  103 (285)
T ss_pred             eccCCCCH
Confidence            99998744

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=97.61  E-value=0.00074  Score=57.57  Aligned_cols=75  Identities=21%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      .+.++.|..+.+|++...++ .+++|......   ...+..|...++.+..   -.+.+++..... ....+++||+.+|
T Consensus        11 ~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~e~~~~   86 (261)
T cd05148          11 ERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRH---KHLISLFAVCSV-GEPVYIITELMEK   86 (261)
T ss_pred             hhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCC---cchhheeeeEec-CCCeEEEEeeccc
Confidence            34567788889999887555 77888876422   3456677777766642   234445544332 4578999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      .++
T Consensus        87 ~~L   89 (261)
T cd05148          87 GSL   89 (261)
T ss_pred             CCH
Confidence            744

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=97.61  E-value=0.00047  Score=61.16  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=24.1

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|+|||++.++.+.|+|+.
T Consensus       115 ~givH~dikp~NIll~~~~~~kl~Dfg  141 (323)
T cd05575         115 LNIIYRDLKPENILLDSQGHVVLTDFG  141 (323)
T ss_pred             CCeEeCCCCHHHeEECCCCcEEEeccC
Confidence            479999999999999988888899975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=97.60  E-value=0.0024  Score=54.29  Aligned_cols=76  Identities=16%  Similarity=0.042  Sum_probs=49.9

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      -.+.++.|..+.+|++...  +..+++|.....   ....+..|..+++.+..   ..+.+++..... .+..+++|+++
T Consensus         7 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~l~~e~~   82 (262)
T cd06613           7 LIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRH---PNIVAYFGSYLR-RDKLWIVMEYC   82 (262)
T ss_pred             EEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCC---CChhceEEEEEe-CCEEEEEEeCC
Confidence            4567888888899998764  337888987642   22446677777776643   223444433222 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        83 ~~~~l   87 (262)
T cd06613          83 GGGSL   87 (262)
T ss_pred             CCCcH
Confidence            98754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=97.60  E-value=0.0011  Score=58.59  Aligned_cols=91  Identities=12%  Similarity=0.043  Sum_probs=54.9

Q ss_pred             cchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC---c---chHHHHHHHHHHHHhcCCCCC
Q 022304            8 DDPIREWILSEGKATHITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG---P---SMFEGEALGLGAMYETRTIRA   79 (299)
Q Consensus         8 ~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~---~---~~~~~E~~~l~~L~~~~~~~v   79 (299)
                      ..++..+......+.-......++.|..+.+|++... .+ .+++|......   .   ..+..|...++.+..   ..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i   83 (313)
T cd06633           7 DPEIADLFYKDDPEEIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKH---PNT   83 (313)
T ss_pred             CHHHHHHhccCCHHHHhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCC---CCC
Confidence            3455555444433333444567888988899998753 33 78888765321   1   234567777776642   234


Q ss_pred             ccceeecccCCCceEEEEecccC
Q 022304           80 PRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        80 P~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ++.+..... ....+++|||+.|
T Consensus        84 v~~~~~~~~-~~~~~lv~e~~~~  105 (313)
T cd06633          84 IEYKGCYLK-EHTAWLVMEYCLG  105 (313)
T ss_pred             ccEEEEEEe-CCEEEEEEecCCC
Confidence            445544332 4578999999976

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=97.60  E-value=0.00088  Score=58.44  Aligned_cols=74  Identities=19%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             eeeCCccccceEEEEeCC-------------c---cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecc
Q 022304           28 CPVGGGCINLASRYGTDA-------------G---SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGA   87 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-------------g---~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~   87 (299)
                      +.++.|..+.||++...+             +   .+.+|..+...    ...+..|+++++.+..   ..+++++....
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h---~~i~~~~~~~~   87 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKN---PNIIRLLGVCV   87 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCC---CCcCeEEEEEc
Confidence            567888888899876432             1   37788876431    2346678888877753   24566665543


Q ss_pred             cCCCceEEEEecccCCCC
Q 022304           88 LPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        88 ~~~~~~~~v~e~l~G~~~  105 (299)
                      . .+..+++|||++|..+
T Consensus        88 ~-~~~~~lv~e~~~~~~L  104 (295)
T cd05097          88 S-DDPLCMITEYMENGDL  104 (295)
T ss_pred             C-CCccEEEEecCCCCcH
Confidence            3 4678999999999754

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=97.60  E-value=0.00046  Score=61.36  Aligned_cols=73  Identities=12%  Similarity=0.098  Sum_probs=44.1

Q ss_pred             eeeeCCccccceEEEEeC-C-ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-A-GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~   95 (299)
                      .+.++.|..+.||++... + ..+++|.....     ....+..|+.+++.|...   .+.+++......    ....++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hp---niv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859           5 QEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHP---DIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCC---CEeeecceEeccCCCCCceEEE
Confidence            356788888899998753 3 37888976421     122356788888877532   222233221110    135799


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +||++++
T Consensus        82 v~e~~~~   88 (338)
T cd07859          82 VFELMES   88 (338)
T ss_pred             EEecCCC
Confidence            9999865

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=97.59  E-value=0.00067  Score=61.11  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=45.0

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCce
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~   93 (299)
                      -++.+|.|..+.||++... .| .+.+|.....     ....+..|..+++.+...   .+.+++......     ....
T Consensus        25 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~  101 (359)
T cd07876          25 QLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHK---NIISLLNVFTPQKSLEEFQDV  101 (359)
T ss_pred             EEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCC---CEeeeeeeeccCCCcccccee
Confidence            3577888988999999763 23 7888876431     123345677777666431   223333221110     1356


Q ss_pred             EEEEecccCC
Q 022304           94 YIIMEFIEFG  103 (299)
Q Consensus        94 ~~v~e~l~G~  103 (299)
                      +++||+++|.
T Consensus       102 ~lv~e~~~~~  111 (359)
T cd07876         102 YLVMELMDAN  111 (359)
T ss_pred             EEEEeCCCcC
Confidence            8999999763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.0018  Score=56.58  Aligned_cols=98  Identities=14%  Similarity=0.167  Sum_probs=61.8

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc--cc--------cCCchhhhhhh--hh--c--------C--------------
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA--CY--------YGHNEAEFGMS--WC--A--------G--------------  240 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~--~~--------~g~~~~Dla~~--~~--~--------~--------------  240 (299)
                      ..-+|||||.+.||+.++ ...+|||+  +.        -..|.-|++-+  ++  .        +              
T Consensus       284 l~RvHGDLHLgQVLvt~g-~~~liDFEGEPsRpl~err~~~sPlrDvAgllRS~DYAa~~~~q~~~~~~e~a~e~~~~~~  362 (438)
T COG3281         284 LQRVHGDLHLGQVLVTPG-RALLIDFEGEPSRPLDERRAPDSPLRDVAGLLRSFDYAAYGPLQALGRTDEAADEQRRGEA  362 (438)
T ss_pred             HHHHhccceehheeeeCC-cEEEEecCCCCCCChhhccCCCCchHHHHHHHHHhHHHHHHhhhcccccchhhHHHHHHHH
Confidence            356899999999999874 48899974  21        36789999854  21  0        0              


Q ss_pred             --C----ChhhHHHhhhhCCCC----CCHHHHHHHHHHHHHH---HHHHhhCcccHHHHHHHHHHHHH
Q 022304          241 --F----GGSFYNSYFEVMPKQ----PGFEKRRDLYMLYHYL---NHYNLFGSGYRSSALSIIDDYLR  295 (299)
Q Consensus       241 --~----~~~f~~~Y~~~~~l~----~~~~~r~~~~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~~  295 (299)
                        |    ...|+++|.......    ++-.+++.+|.+-.+.   +.-.-..+.|.+.....+.+++.
T Consensus       363 ~~w~~as~~~fl~gY~aa~~~~g~~~e~s~~lL~~~lLeKAaYEv~YE~~~Rp~wl~IPl~~larl~e  430 (438)
T COG3281         363 RRWVEASRAAFLDGYAAASSIDGLPGEDSAELLAAYLLEKAAYEVGYEARYRPGWLPIPLAALARLTE  430 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHhhccCCCceeccHHHHHHHHH
Confidence              0    026999999654332    2336677777665543   22233356776665555555543

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=97.59  E-value=0.00066  Score=58.84  Aligned_cols=27  Identities=30%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|+||+++.++...++|+.
T Consensus       116 ~~ivH~dikp~Nil~~~~~~~~l~dfg  142 (279)
T cd05633         116 RFVVYRDLKPANILLDEHGHVRISDLG  142 (279)
T ss_pred             CCcCCCCCCHHHEEECCCCCEEEccCC
Confidence            468999999999999888878899974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=97.59  E-value=0.00069  Score=58.36  Aligned_cols=78  Identities=18%  Similarity=0.101  Sum_probs=49.4

Q ss_pred             eeeeCCccccceEEEEeC-C-ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD-A-GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++.++.|..+.+|+.... + ..+++|.....    ....+..|..+++.+.....-.+.+++..... ....+++||++
T Consensus         6 ~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~-~~~~~lv~e~~   84 (277)
T cd06917           6 LELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK-GPRLWIIMEYA   84 (277)
T ss_pred             hhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee-CCEEEEEEecC
Confidence            356778888899998753 3 37888976532    12346678888888863211223334433222 45789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        85 ~~~~L   89 (277)
T cd06917          85 EGGSV   89 (277)
T ss_pred             CCCcH
Confidence            98743

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=97.58  E-value=0.00038  Score=59.45  Aligned_cols=75  Identities=20%  Similarity=0.053  Sum_probs=47.1

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++.++.|..+.+|++...  +..+++|......    ...+..|...++.+. +  -.+++++..... .+..+++++++
T Consensus         6 ~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~-~--~~i~~~~~~~~~-~~~~~lv~e~~   81 (265)
T cd06605           6 LGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCN-S--PYIVGFYGAFYN-NGDISICMEYM   81 (265)
T ss_pred             HHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCC-C--Cchhhhheeeec-CCEEEEEEEec
Confidence            456777888889999875  3378888765421    233556776666654 2  233444433322 46889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        82 ~~~~L   86 (265)
T cd06605          82 DGGSL   86 (265)
T ss_pred             CCCcH
Confidence            98643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=97.58  E-value=0.0012  Score=56.06  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=47.1

Q ss_pred             eeeCCccccceEEEEeCC--ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTDA--GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..++.|..+.+|+++...  ..+++|.....     ....+..|...++.+..   -.+.+++..... .+..++++||.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   81 (256)
T cd08529           6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDS---SYIIRYYESFLD-KGKLNIVMEYA   81 (256)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCC---CCeehheeeecc-CCEEEEEEEeC
Confidence            557778778899998742  37888876421     12345567776666642   234444444332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus        82 ~~~~L   86 (256)
T cd08529          82 ENGDL   86 (256)
T ss_pred             CCCcH
Confidence            98743

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=97.58  E-value=0.00069  Score=58.86  Aligned_cols=75  Identities=12%  Similarity=0.059  Sum_probs=46.9

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +..++.|..+.||++... ++ .+.+|.....      ....+..|+.+++.|...   .++..+..... ....+++|+
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---~iv~~~~~~~~-~~~~~lv~e   80 (285)
T cd05605           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSR---FVVSLAYAYET-KDALCLVLT   80 (285)
T ss_pred             EEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCC---CEeeeeeeecC-CCeEEEEEe
Confidence            456788888999998864 33 6778876431      112345688888777431   22333333222 457899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        81 ~~~~~~L   87 (285)
T cd05605          81 LMNGGDL   87 (285)
T ss_pred             ccCCCcH
Confidence            9998744

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=97.57  E-value=0.00091  Score=57.87  Aligned_cols=72  Identities=14%  Similarity=0.016  Sum_probs=43.4

Q ss_pred             eCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           30 VGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +|.|..+.||++.... | .|.+|.....      .......|.++++.+..   -.+.+++..... ....+++||+++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~h---p~i~~~~~~~~~-~~~~~lv~e~~~   76 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNS---PFIVNLAYAFES-KTHLCLVMSLMN   76 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCC---CcEEEEEEEEec-CCeEEEEEecCC
Confidence            4567778999988642 3 7888866421      11223457777777742   123333332222 467899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        77 g~~L   80 (277)
T cd05607          77 GGDL   80 (277)
T ss_pred             CCCH
Confidence            8744

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=97.57  E-value=0.00053  Score=59.55  Aligned_cols=76  Identities=12%  Similarity=0.001  Sum_probs=48.4

Q ss_pred             eeeeCCccccceEEEEeC----C-ccEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           27 ICPVGGGCINLASRYGTD----A-GSFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~----~-g~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      .+.++.|..+.+|++...    + ..+.+|.....       ....+..|..++..+..+  -.+++++..... ....+
T Consensus         5 ~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~--~~i~~~~~~~~~-~~~~~   81 (288)
T cd05583           5 LRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRC--PFLVTLHYAFQT-DTKLH   81 (288)
T ss_pred             EEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCC--cchhhhheeeec-CCEEE
Confidence            466888888899998742    2 26888876531       123456788888877654  233444433222 45788


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|..+
T Consensus        82 lv~e~~~~~~L   92 (288)
T cd05583          82 LILDYVNGGEL   92 (288)
T ss_pred             EEEecCCCCcH
Confidence            99999988643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=97.57  E-value=0.00073  Score=58.39  Aligned_cols=73  Identities=16%  Similarity=0.142  Sum_probs=47.6

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..++.|..+.+|++... +| .+++|......     ...+..|..+++.+. +  -.+++++..... ....+++++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~-~--~~i~~~~~~~~~-~~~~~~v~e~~   81 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQ-H--PYVVKLLDVFPH-GSGFVLVMEYM   81 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCC-C--CCCcceeeEEec-CCeeEEEeccc
Confidence            45788888899998863 33 78889875321     234667887777775 2  234555544332 45789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                       |.++
T Consensus        82 -~~~L   85 (286)
T cd07832          82 -PSDL   85 (286)
T ss_pred             -CCCH
Confidence             6533

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=97.57  E-value=0.00091  Score=56.50  Aligned_cols=74  Identities=19%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCC--CceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT--GGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~--~~~~~v~   97 (299)
                      .+.++.|....+|++... ++ .+++|......     ...+..|+..++.+..   ..+.+++..... .  ...++++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~~~lv~   80 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQH---PNIVRYYGSERD-EEKNTLNIFL   80 (260)
T ss_pred             eeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCC---CCEeeEEEEEec-CCCCeEEEEE
Confidence            356777777899998875 33 78888876432     3456778877777752   233444444332 3  5789999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      |+++|..
T Consensus        81 e~~~~~~   87 (260)
T cd06606          81 EYVSGGS   87 (260)
T ss_pred             EecCCCc
Confidence            9998863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=97.56  E-value=0.00072  Score=57.85  Aligned_cols=74  Identities=14%  Similarity=0.034  Sum_probs=47.5

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCCCCc------------chHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRSIGP------------SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~~------------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      ..++.|..+.+|++...  +..+++|.......            ..++.|..+++.+..   -.+++++..... .+..
T Consensus         6 ~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~   81 (267)
T cd06628           6 ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQH---ENIVQYLGSSLD-ADHL   81 (267)
T ss_pred             ceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCC---CCeeeEEEEEEe-CCcc
Confidence            35667778899998763  23788886643210            235667777777743   234555554333 5688


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      ++++|+++|..+
T Consensus        82 ~lv~e~~~~~~L   93 (267)
T cd06628          82 NIFLEYVPGGSV   93 (267)
T ss_pred             EEEEEecCCCCH
Confidence            999999988643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=97.56  E-value=0.00066  Score=59.03  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             eeeeeeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           24 ITKICPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ..-.+.++.|..+.+|+....+       ..+.+|......    ...+..|..++..+..+  ..+.+.+..... .+.
T Consensus        14 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~i~~~~~~~~~-~~~   90 (293)
T cd05053          14 LTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH--KNIINLLGVCTQ-EGP   90 (293)
T ss_pred             eEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCC--CCeeeEEEEEcC-CCC
Confidence            3445778888888999987531       257888876421    12355688777777443  123334443322 567


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++|||+++.++
T Consensus        91 ~~li~e~~~~~~L  103 (293)
T cd05053          91 LYVVVEYAAHGNL  103 (293)
T ss_pred             eEEEEEeCCCCcH
Confidence            8999999998743

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=97.56  E-value=0.00091  Score=61.38  Aligned_cols=76  Identities=14%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             eeeeCCccccceEEEEeC---C----ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTD---A----GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~---~----g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.+|.|..+.||+.+..   .    ..+.+|......    ...+..|+.++..|..+  -.+++++..... .+..++
T Consensus        42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~H--pnIv~l~~~~~~-~~~~~l  118 (400)
T cd05105          42 GRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPH--LNIVNLLGACTK-SGPIYI  118 (400)
T ss_pred             hheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCC--CCeeeEEEEEcc-CCceEE
Confidence            467888888899987631   1    157888775421    23466788888888644  245666655433 568899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|.++
T Consensus       119 v~Ey~~~g~L  128 (400)
T cd05105         119 ITEYCFYGDL  128 (400)
T ss_pred             EEEecCCCcH
Confidence            9999999865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=97.55  E-value=0.0015  Score=56.86  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=47.7

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~   95 (299)
                      ...++.|..+.+|++... ++ .+++|.....     ....+..|..+++.+..+  -.+++++......    ....|+
T Consensus         6 ~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~--~~i~~~~~~~~~~~~~~~~~~~l   83 (295)
T cd07837           6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSES--IYIVRLLDVEHVEEKNGKPSLYL   83 (295)
T ss_pred             eeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCC--CCccceeeeEeecCCCCCceEEE
Confidence            456788888899998864 33 7888976532     123456788888888653  2344555433221    123799


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +|+|++|
T Consensus        84 v~e~~~~   90 (295)
T cd07837          84 VFEYLDS   90 (295)
T ss_pred             EeeccCc
Confidence            9999976

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=97.55  E-value=0.00061  Score=58.20  Aligned_cols=72  Identities=14%  Similarity=0.050  Sum_probs=45.8

Q ss_pred             eCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           30 VGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++.|..+.+|++...  +..+++|.....      ....+..|...++.+..   -.+++++..... ....+++++|.+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~~   76 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNH---PFIVKLYRTFKD-KKYIYMLMEYCL   76 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCC---CCEeeeeeeEEc-CCccEEEEecCC
Confidence            356667789998875  448889987531      12346677777776642   234444443222 457899999998


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        77 ~~~L   80 (262)
T cd05572          77 GGEL   80 (262)
T ss_pred             CCcH
Confidence            8643

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=97.54  E-value=0.0013  Score=57.13  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=48.3

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ....++.|..+.+|++... ++ .+.+|.....      ....+..|.++++.|...   .++........ .+..+++|
T Consensus         4 ~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~---~i~~~~~~~~~-~~~~~lv~   79 (285)
T cd05632           4 QYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQ---FVVNLAYAYET-KDALCLVL   79 (285)
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCc---CceeEEEEEec-CCEEEEEE
Confidence            4466888888999998764 33 6888876431      112345688888887542   23333333222 45789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ++++|..+
T Consensus        80 e~~~~~~L   87 (285)
T cd05632          80 TIMNGGDL   87 (285)
T ss_pred             EeccCccH
Confidence            99998644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=97.54  E-value=0.0012  Score=56.49  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=24.2

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|+++.||+++.++...++|+.
T Consensus       133 ~~i~H~dl~~~nil~~~~~~~~l~dfg  159 (269)
T cd08528         133 KRIVHRDLTPNNIMLGEDDKVTITDFG  159 (269)
T ss_pred             CceeecCCCHHHEEECCCCcEEEeccc
Confidence            479999999999999988878999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=97.54  E-value=0.00077  Score=56.96  Aligned_cols=72  Identities=11%  Similarity=0.018  Sum_probs=45.8

Q ss_pred             eCCccccceEEEEeC--CccEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           30 VGGGCINLASRYGTD--AGSFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~--~g~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +|.|..+.+|++...  +..+++|......      ...+..|...++.+..   ..+++++..... ....+++|++++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v~e~~~   76 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINH---PFIVKLHYAFQT-EEKLYLVLEYAP   76 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCC---CcHHHHHHHeec-CCeeEEEEecCC
Confidence            356777789998864  3378889876421      1245677777776652   234444443322 467899999998


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        77 ~~~L   80 (250)
T cd05123          77 GGEL   80 (250)
T ss_pred             CCcH
Confidence            7643

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=97.54  E-value=0.0014  Score=56.24  Aligned_cols=73  Identities=15%  Similarity=0.145  Sum_probs=44.0

Q ss_pred             eeCCccccceEEEEeCCc----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDAG----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .++.|..+.||+.+..++    .+++|......    ...+..|+..++.+..   -.+.+++..... .+..+++||++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h---~nii~~~~~~~~-~~~~~lv~e~~   77 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNH---PNVLQCLGQCIE-SIPYLLVLEFC   77 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCC---CCcceEEEEECC-CCceEEEEEeC
Confidence            467788888998754322    67888654321    1234456666665532   234445544332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        78 ~~g~L   82 (269)
T cd05042          78 PLGDL   82 (269)
T ss_pred             CCCcH
Confidence            88643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=97.54  E-value=0.0012  Score=56.48  Aligned_cols=76  Identities=24%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             eeeeeCCccccceEEEEeCC-----ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-----GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-----g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      -.+.++.|..+.+|+.....     ..+.+|......    ...+..|..+++.+..   -.+.+++..... .+..+++
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~iv   83 (266)
T cd05033           8 IEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDH---PNIIRLEGVVTK-SRPVMII   83 (266)
T ss_pred             eeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCC---CCcceEeEEEec-CCceEEE
Confidence            45677888888999976531     267888765421    1234567777766642   234445443322 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+.+|..+
T Consensus        84 ~e~~~~~~L   92 (266)
T cd05033          84 TEYMENGSL   92 (266)
T ss_pred             EEcCCCCCH
Confidence            999998744

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=97.54  E-value=0.00077  Score=57.18  Aligned_cols=75  Identities=13%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.++.|....+|++...+  ..+++|..... ....+..|.+.++.+..   ..+++++..... ....++++++++|.
T Consensus         8 ~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~---~~i~~~~~~~~~-~~~~~l~~e~~~~~   83 (256)
T cd06612           8 LEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDS---PYIVKYYGSYFK-NTDLWIVMEYCGAG   83 (256)
T ss_pred             hhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCC---CcEeeeeeeeec-CCcEEEEEecCCCC
Confidence            3457777778899988754  37888987642 23457788888877732   234445544332 46789999999987


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      .+
T Consensus        84 ~L   85 (256)
T cd06612          84 SV   85 (256)
T ss_pred             cH
Confidence            44

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=97.54  E-value=0.0015  Score=56.12  Aligned_cols=78  Identities=17%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+.....++.|..+.+|++... .+ .|++|........  ..|......+..+  -.+++++..... .+..+++|||+
T Consensus        17 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~--~~e~~~~~~~~~h--~~iv~~~~~~~~-~~~~~iv~e~~   91 (267)
T PHA03390         17 EIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN--AIEPMVHQLMKDN--PNFIKLYYSVTT-LKGHVLIMDYI   91 (267)
T ss_pred             ccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc--hhhHHHHHHhhcC--CCEEEEEEEEec-CCeeEEEEEcC
Confidence            4444445788988999998864 23 7888887642211  1233333333333  345555544333 46889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus        92 ~~~~L   96 (267)
T PHA03390         92 KDGDL   96 (267)
T ss_pred             CCCcH
Confidence            98643

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=97.54  E-value=0.00084  Score=57.24  Aligned_cols=75  Identities=13%  Similarity=0.123  Sum_probs=43.6

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCCCC---cc---hHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRSIG---PS---MFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~---~~---~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++++.|..+.+|++...  +..+++|..+...   ..   .+..|...+.....+  ..+++++..... ....++++||
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~i~~~~~~~~~-~~~~~lv~e~   78 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGES--PYVAKLYYSFQS-KDYLYLVMEY   78 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCC--CCeeeeeeeEEc-CCeEEEEEec
Confidence            46778888899998763  3378889875421   11   122233322222222  234555544332 4678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        79 ~~~~~L   84 (260)
T cd05611          79 LNGGDC   84 (260)
T ss_pred             cCCCCH
Confidence            999754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=97.53  E-value=0.00084  Score=58.33  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=49.3

Q ss_pred             eeeeeeCCccccceEEEEeC-C-ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           25 TKICPVGGGCINLASRYGTD-A-GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .-+..++.|..+.+|++... + ..|++|.....    ....+..|..+++.+...   .+.+++..... ....+++||
T Consensus         8 ~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~---~i~~~~~~~~~-~~~~~lv~e   83 (291)
T cd07844           8 KKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHA---NIVTLHDIIHT-KKTLTLVFE   83 (291)
T ss_pred             eEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCc---ceeeEEEEEec-CCeEEEEEe
Confidence            34577888888899998864 3 37889976531    123345688888888532   34455544332 467899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      |++|
T Consensus        84 ~~~~   87 (291)
T cd07844          84 YLDT   87 (291)
T ss_pred             cCCC
Confidence            9975

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=97.53  E-value=0.0016  Score=55.49  Aligned_cols=75  Identities=11%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+.++.|..+.+|++... ++ .+++|.....    ....+..|+..++.+..   ..+++++..... ....+++++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~iv~e~~   81 (267)
T cd06610           6 IEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNH---PNVVKYYTSFVV-GDELWLVMPYL   81 (267)
T ss_pred             eeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCC---CCEEEEEEEEee-CCEEEEEEecc
Confidence            456777888899998863 33 7888887532    12446778877776643   234444433222 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        82 ~~~~l   86 (267)
T cd06610          82 SGGSL   86 (267)
T ss_pred             CCCcH
Confidence            98743

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=97.53  E-value=0.0014  Score=56.73  Aligned_cols=77  Identities=25%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             eeeeeCCccccceEEEEe-----CC-ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceE
Q 022304           26 KICPVGGGCINLASRYGT-----DA-GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~-----~~-g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~   94 (299)
                      .++.++.|..+.||++..     .+ ..+.+|.....    ....+..|+++++.+..   -.+++++...... ....+
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~~~~~~~~   84 (283)
T cd05080           8 KIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYH---ENIVKYKGCCSEQGGKGLQ   84 (283)
T ss_pred             eceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCC---CCEeeEEEEEecCCCceEE
Confidence            456778888888877542     12 36888987642    12345678888877743   2344555443221 24578


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+++|..+
T Consensus        85 lv~e~~~~~~l   95 (283)
T cd05080          85 LIMEYVPLGSL   95 (283)
T ss_pred             EEecCCCCCCH
Confidence            99999988744

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=97.52  E-value=0.00052  Score=58.49  Aligned_cols=75  Identities=11%  Similarity=0.018  Sum_probs=48.8

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ...++.|..+.+|++...  +..+++|.....      ....+..|...++.+..   -.+++++..... ....+++++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e   80 (258)
T cd05578           5 LRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNH---PFLVNLWYSFQD-EENMYLVVD   80 (258)
T ss_pred             EEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCC---CChHHHHHhhcC-CCeEEEEEe
Confidence            457788888899999875  337888977531      12345667777776643   123444433222 457899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        81 ~~~~~~L   87 (258)
T cd05578          81 LLLGGDL   87 (258)
T ss_pred             CCCCCCH
Confidence            9999744

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=97.52  E-value=0.00089  Score=57.87  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=47.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.++.|..+.+|++... +| .+++|.....     ....+..|.+.++.+..   -.+++++..... .+..++++++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~---~~iv~~~~~~~~-~~~~~iv~e~   79 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNH---PNIVRLLDVVHS-ENKLYLVFEF   79 (283)
T ss_pred             heEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCC---CCccCHhheecc-CCeEEEEEec
Confidence            356788888899998753 34 7888977532     12345678888877753   245555554433 4688999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      +++
T Consensus        80 ~~~   82 (283)
T cd07835          80 LDL   82 (283)
T ss_pred             cCc
Confidence            854

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=97.51  E-value=0.00084  Score=57.17  Aligned_cols=75  Identities=15%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+.++.|..+.+|+++..+  ..+++|......    ...+..|...+..+..   ..+++++..... .+..+++++++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~e~~   81 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCES---PYVVKCYGAFYK-EGEISIVLEYM   81 (264)
T ss_pred             eeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCC---CCeeeEEEEEcc-CCeEEEEEEec
Confidence            3567777778899987753  378889876432    2345667776766652   234555544332 46889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus        82 ~~~~L   86 (264)
T cd06623          82 DGGSL   86 (264)
T ss_pred             CCCcH
Confidence            98744

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=97.51  E-value=0.003  Score=53.57  Aligned_cols=75  Identities=21%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             eeeCCccccceEEEEeCC--ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTDA--GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +.++.|..+.+|++....  ..+++|.....     ....+..|..+++.+..   ..+.+++.......+..+++|+++
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~~~~~~~lv~e~~   82 (257)
T cd08223           6 RVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKH---PNIVAYRESWEGEDGLLYIVMGFC   82 (257)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCC---CCeeeeeeeecCCCCEEEEEeccc
Confidence            566778888999988643  37888876431     11235567666666642   123333322211134678999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        83 ~~~~l   87 (257)
T cd08223          83 EGGDL   87 (257)
T ss_pred             CCCcH
Confidence            98643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=97.51  E-value=0.00071  Score=58.48  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             eeeeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -.+.++.|....||++....       ..+.+|......    ...+..|...+..+..   ..+.+++..... .+..+
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h---~~i~~~~~~~~~-~~~~~   84 (283)
T cd05048           9 FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQH---PNIVCLLGVCTK-EQPTC   84 (283)
T ss_pred             hhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCC---cccceEEEEEcC-CCceE
Confidence            35678888888999987522       257888765321    2345678777776643   234445544332 46789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      +++||.+|.++
T Consensus        85 ~~~e~~~~~~L   95 (283)
T cd05048          85 MLFEYLAHGDL   95 (283)
T ss_pred             EEEecCCCCcH
Confidence            99999988643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=97.51  E-value=0.001  Score=57.06  Aligned_cols=75  Identities=19%  Similarity=0.069  Sum_probs=47.1

Q ss_pred             eeeeCCccccceEEEEeC--Cc---cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD--AG---SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g---~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.++.|..+.+|++...  ++   .+.+|......    ...+..|..+++.+..   -.+++.+..... .+..+++|
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~   84 (267)
T cd05066           9 EKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDH---PNIIHLEGVVTK-SKPVMIVT   84 (267)
T ss_pred             eeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCC---CCcceEEEEEec-CCccEEEE
Confidence            456788888899987642  22   57888765321    2345667777766642   234444444332 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        85 e~~~~~~L   92 (267)
T cd05066          85 EYMENGSL   92 (267)
T ss_pred             EcCCCCCH
Confidence            99998744

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=97.50  E-value=0.00086  Score=58.00  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=49.7

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.++.|..+.+|++...+  ..+++|.....     ....+..|.++++.+..   ..+++++..... .+..++++|
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e   80 (286)
T cd07846           5 NLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRH---ENLVNLIEVFRR-KKRLYLVFE   80 (286)
T ss_pred             EeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCC---cchhhHHHhccc-CCeEEEEEe
Confidence            35678888888999988743  37888976431     12345678887777743   234555544332 567899999


Q ss_pred             cccCC
Q 022304           99 FIEFG  103 (299)
Q Consensus        99 ~l~G~  103 (299)
                      |++|.
T Consensus        81 ~~~~~   85 (286)
T cd07846          81 FVDHT   85 (286)
T ss_pred             cCCcc
Confidence            99875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=97.50  E-value=0.0013  Score=56.35  Aligned_cols=75  Identities=24%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             eeeeCCccccceEEEEeC-Cc----cEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG----SFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g----~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.++.|..+.+|+.... ++    .+.+|..... .   ...+..|...++.+..   -.+.+++..... .+..+++|
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h---~ni~~~~~~~~~-~~~~~lv~   84 (269)
T cd05065           9 EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH---PNIIHLEGVVTK-SRPVMIIT   84 (269)
T ss_pred             EeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCC---cCcceEEEEECC-CCceEEEE
Confidence            356788888899998753 22    4889987642 1   2345667777776642   234445444322 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        85 e~~~~~~L   92 (269)
T cd05065          85 EFMENGAL   92 (269)
T ss_pred             ecCCCCcH
Confidence            99988643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=97.49  E-value=0.0013  Score=56.78  Aligned_cols=75  Identities=15%  Similarity=-0.137  Sum_probs=47.7

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++.++.|..+.+|++...  +..+++|......    ...+..|..++..+..   -.+.+++..... ....+++||++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~   81 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDS---PYIIGFYGAFFV-ENRISICTEFM   81 (279)
T ss_pred             eeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCC---CCeeeEEEEEEE-CCEEEEEEecC
Confidence            467888888899998753  3378888875321    1234567776666532   234444543332 46788999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        82 ~~~~l   86 (279)
T cd06619          82 DGGSL   86 (279)
T ss_pred             CCCCh
Confidence            98744

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=97.49  E-value=0.0015  Score=58.98  Aligned_cols=75  Identities=13%  Similarity=0.125  Sum_probs=44.9

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeec---cc-C-CCce
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVG---AL-P-TGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~---~~-~-~~~~   93 (299)
                      -++.+|.|..+.||++...  +..+++|.....     ....+..|..+++.+...   .+.+++...   .. . ....
T Consensus        28 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---~ii~~~~~~~~~~~~~~~~~~  104 (364)
T cd07875          28 NLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK---NIIGLLNVFTPQKSLEEFQDV  104 (364)
T ss_pred             EEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCC---CccccceeecccccccccCeE
Confidence            3567888888899998753  337888876531     123345677777766432   222333221   11 0 2357


Q ss_pred             EEEEecccCC
Q 022304           94 YIIMEFIEFG  103 (299)
Q Consensus        94 ~~v~e~l~G~  103 (299)
                      +++||++++.
T Consensus       105 ~lv~e~~~~~  114 (364)
T cd07875         105 YIVMELMDAN  114 (364)
T ss_pred             EEEEeCCCCC
Confidence            9999999763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=97.49  E-value=0.0025  Score=54.97  Aligned_cols=76  Identities=16%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             eeeeeCCccccceEEEEeC-C-ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-A-GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+..++.|..+.+|++... + ..+.+|+.....    ...+..|...++.+..   ..+.+++..... ....++++||
T Consensus         8 ~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~   83 (277)
T cd06641           8 KLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS---PYVTKYYGSYLK-DTKLWIIMEY   83 (277)
T ss_pred             hheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCC---CCEeEEEEEEEe-CCeEEEEEEe
Confidence            3456788888899998653 3 378889875321    1335566666666542   123344433322 4678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        84 ~~~~~l   89 (277)
T cd06641          84 LGGGSA   89 (277)
T ss_pred             CCCCcH
Confidence            998643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=97.48  E-value=0.0014  Score=55.75  Aligned_cols=76  Identities=16%  Similarity=0.034  Sum_probs=48.5

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .++.++.|..+.+|.+...+  ..+++|.....     ....+..|.++++.+..   -.+.+++..... .+..+++||
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~~~~e   79 (256)
T cd08221           4 PIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQH---PNIIAYYNHFMD-DNTLLIEME   79 (256)
T ss_pred             EeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCC---CCeeEEEeEEec-CCeEEEEEE
Confidence            35677888778778777643  37888865421     12345678888877743   234445544332 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        80 ~~~~~~L   86 (256)
T cd08221          80 YANGGTL   86 (256)
T ss_pred             ecCCCcH
Confidence            9998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=97.48  E-value=0.0017  Score=57.15  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             eeeCCccccceEEEEeCC----ccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeeccc-CCCceEEEEeccc
Q 022304           28 CPVGGGCINLASRYGTDA----GSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL-PTGGSYIIMEFIE  101 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~----g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~-~~~~~~~v~e~l~  101 (299)
                      ..+|.|..+.||++...+    ..+.+|..... ....+.+|..+++.+...   .+.+++..... .....++++++.+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHP---NVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCC---CeeeEEEEEeccCCCeEEEEEeeeC
Confidence            368888889999998543    26888876542 223467788888877532   22333332211 1456789999987


Q ss_pred             C
Q 022304          102 F  102 (299)
Q Consensus       102 G  102 (299)
                      +
T Consensus        84 ~   84 (317)
T cd07867          84 H   84 (317)
T ss_pred             C
Confidence            6

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=97.48  E-value=0.0013  Score=57.82  Aligned_cols=133  Identities=22%  Similarity=0.235  Sum_probs=81.7

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecc---cCCC-ceEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGA---LPTG-GSYII   96 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~---~~~~-~~~~v   96 (299)
                      ..+-+|.|....||.....+ | .+.+|......   ...+++|..+|..|.      .|+++.+.-   ..++ ...++
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~------~p~IV~~~G~~~~~~~~~~~i~   94 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLN------HPNIVQYYGSSSSRENDEYNIF   94 (313)
T ss_pred             hhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCC------CCCEEeeCCccccccCeeeEee
Confidence            34567888888999998764 4 66777765321   234788998887775      366665422   2133 68899


Q ss_pred             EecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHH
Q 022304           97 MEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIY  176 (299)
Q Consensus        97 ~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (299)
                      |||++|+.       +++.+.+.          |       |.+|      ++        .+.                
T Consensus        95 mEy~~~Gs-------L~~~~~~~----------g-------~~l~------E~--------~v~----------------  120 (313)
T KOG0198|consen   95 MEYAPGGS-------LSDLIKRY----------G-------GKLP------EP--------LVR----------------  120 (313)
T ss_pred             eeccCCCc-------HHHHHHHc----------C-------CCCC------HH--------HHH----------------
Confidence            99999983       33444331          1       0010      00        011                


Q ss_pred             HHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecC-CCCeEEEccc
Q 022304          177 QRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDK-NGEPVILDPA  223 (299)
Q Consensus       177 ~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~-~~~~~iID~~  223 (299)
                      .....+++.+..+.     ..+++|+|+++.|||+++ ++...|-||.
T Consensus       121 ~ytr~iL~GL~ylH-----s~g~vH~DiK~~NiLl~~~~~~~KlaDFG  163 (313)
T KOG0198|consen  121 RYTRQILEGLAYLH-----SKGIVHCDIKPANILLDPSNGDVKLADFG  163 (313)
T ss_pred             HHHHHHHHHHHHHH-----hCCEeccCcccceEEEeCCCCeEEeccCc
Confidence            11223344444333     368999999999999998 5667787864

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=97.48  E-value=0.002  Score=56.05  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=44.8

Q ss_pred             eeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           28 CPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      +.++.|..+.+|+.....       ..+.+|......    ...+..|...++.+..   -.+.+++..... .+..+++
T Consensus         6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv   81 (290)
T cd05045           6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNH---PHVIKLYGACSQ-DGPLLLI   81 (290)
T ss_pred             ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCC---CCEeeEEEEEec-CCCcEEE
Confidence            456777778899976421       246677665321    1235667777776642   123344443322 5678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ++|.+|..+
T Consensus        82 ~e~~~~~~L   90 (290)
T cd05045          82 VEYAKYGSL   90 (290)
T ss_pred             EEecCCCCH
Confidence            999998744

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=97.48  E-value=0.0007  Score=59.37  Aligned_cols=77  Identities=17%  Similarity=0.140  Sum_probs=50.6

Q ss_pred             eeeeeCCccccceEEEEeC--------Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           26 KICPVGGGCINLASRYGTD--------AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--------~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      -.++++.|..+.||++...        ++ .+++|.....    ....+..|...++.+..+  -.+.+++..... .+.
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~i~~~~~~~~~-~~~   95 (304)
T cd05101          19 LGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH--KNIINLLGACTQ-DGP   95 (304)
T ss_pred             ecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccC--CCchheeEEEec-CCc
Confidence            3477888888999988631        11 5788877532    123467888888888554  234455554332 467


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++|+|+++..+
T Consensus        96 ~~lv~e~~~~~~L  108 (304)
T cd05101          96 LYVIVEYASKGNL  108 (304)
T ss_pred             eEEEEecCCCCcH
Confidence            8999999998743

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.0011  Score=61.80  Aligned_cols=132  Identities=19%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             eeeCCccccceEEEEe-CCc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGT-DAG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .-+|.|....+|+++. +.| .|.+|+-+.      ..+..+..|+++.+.|+..   .+-+.+.+-++ ....|+++|.
T Consensus        24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~Hp---nIV~f~~~FED-s~nVYivLEL   99 (592)
T KOG0575|consen   24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHP---NIVQFYHFFED-SNNVYIVLEL   99 (592)
T ss_pred             eeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCC---cEEeeeeEeec-CCceEEEEEe
Confidence            3468888899999998 555 788887764      3467788999999888641   23344433222 5688999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          100 IEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       100 l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                      ++-+           .|..+|+...+   +.                 +.                        +.+-.+
T Consensus       100 C~~~-----------sL~el~Krrk~---lt-----------------Ep------------------------Eary~l  124 (592)
T KOG0575|consen  100 CHRG-----------SLMELLKRRKP---LT-----------------EP------------------------EARYFL  124 (592)
T ss_pred             cCCc-----------cHHHHHHhcCC---CC-----------------cH------------------------HHHHHH
Confidence            8765           24455553321   00                 00                        001123


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+++..+..+.     ..++||+|++.||++++++-++-|-||.
T Consensus       125 ~QIv~GlkYLH-----~~~IiHRDLKLGNlfL~~~~~VKIgDFG  163 (592)
T KOG0575|consen  125 RQIVEGLKYLH-----SLGIIHRDLKLGNLFLNENMNVKIGDFG  163 (592)
T ss_pred             HHHHHHHHHHH-----hcCceecccchhheeecCcCcEEecccc
Confidence            34455555433     2469999999999999877667788874

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=97.47  E-value=0.00098  Score=57.63  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.++.|..+.+|++... .| .+++|.....     ....+..|++.++.+...   .+.+++..... .+..++++|+
T Consensus         5 ~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~---~i~~~~~~~~~-~~~~~lv~e~   80 (284)
T cd07839           5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK---NIVRLYDVLHS-DKKLTLVFEY   80 (284)
T ss_pred             EEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCC---CeeeHHHHhcc-CCceEEEEec
Confidence            456788888899998863 34 6788876421     123456788888777431   23334433222 4678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        81 ~~~   83 (284)
T cd07839          81 CDQ   83 (284)
T ss_pred             CCC
Confidence            875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=97.47  E-value=0.0017  Score=56.06  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=50.3

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .++.++.|..+.+|+.+.. +| .+++|.....    ....+..|+.+++.+..   -.+++++..... .+..+++||+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~   79 (284)
T cd07836           4 QLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKH---ENIVRLHDVIHT-ENKLMLVFEY   79 (284)
T ss_pred             EeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcC---CCEeeeeeeEee-CCcEEEEEec
Confidence            4567888888899998864 34 7888876532    12345678888888853   245666655433 4678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        80 ~~~   82 (284)
T cd07836          80 MDK   82 (284)
T ss_pred             CCc
Confidence            986

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=97.47  E-value=0.0014  Score=54.07  Aligned_cols=73  Identities=18%  Similarity=0.105  Sum_probs=51.3

Q ss_pred             eeeCCccccceEEEEeCC--ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           28 CPVGGGCINLASRYGTDA--GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +.++.|....+|++...+  ..+++|.....    ....+..|.+.++.+..   ..+++++..... ....++++++.+
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~---~~i~~~~~~~~~-~~~~~~v~e~~~   80 (225)
T smart00221        5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKH---PNIVKLYGVFED-PEPLYLVMEYCE   80 (225)
T ss_pred             eEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCC---CChhhheeeeec-CCceEEEEeccC
Confidence            567777788999998865  48999998753    23456778887777732   345556654432 467899999998


Q ss_pred             CCC
Q 022304          102 FGS  104 (299)
Q Consensus       102 G~~  104 (299)
                      |.+
T Consensus        81 ~~~   83 (225)
T smart00221       81 GGD   83 (225)
T ss_pred             CCC
Confidence            863

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=97.47  E-value=0.0018  Score=57.08  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=46.0

Q ss_pred             eeeCCccccceEEEEeCC----ccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEeccc
Q 022304           28 CPVGGGCINLASRYGTDA----GSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEFIE  101 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~----g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~l~  101 (299)
                      ..+|.|..+.||++...+    ..+.+|..... ....+.+|+.+++.+...   .+.+++...... ....++++++.+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHP---NVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCC---CCcceeeeEecCCCcEEEEEEeccC
Confidence            468888889999997532    26888877542 233467899988888542   233333322111 346789999987


Q ss_pred             C
Q 022304          102 F  102 (299)
Q Consensus       102 G  102 (299)
                      +
T Consensus        84 ~   84 (317)
T cd07868          84 H   84 (317)
T ss_pred             C
Confidence            6

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=97.46  E-value=0.0013  Score=55.85  Aligned_cols=75  Identities=17%  Similarity=0.153  Sum_probs=48.0

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +..++.|..+.+|++....  ..|++|.....     ....+..|...++.+..   ..+++++..... .+..++++|+
T Consensus         5 ~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~e~   80 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKH---PNIVQYQESFEE-NGNLYIVMDY   80 (256)
T ss_pred             EEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCC---CCeeeeEeeecC-CCeEEEEEec
Confidence            5678888888899987642  37888865421     12345667777766643   124444443322 5688999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        81 ~~~~~l   86 (256)
T cd08218          81 CEGGDL   86 (256)
T ss_pred             CCCCcH
Confidence            998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=97.46  E-value=0.0029  Score=54.36  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             eeeeeeeCCccccceEEEEeC-------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           24 ITKICPVGGGCINLASRYGTD-------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ..-++.+|.|..+.+|++...       ...+.+|......    ...+..|.++++.+..   ..+++++..... .+.
T Consensus         7 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~   82 (275)
T cd05046           7 LQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSH---KNVVRLLGLCRE-AEP   82 (275)
T ss_pred             ceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCC---cceeeeEEEECC-CCc
Confidence            344667888888999998752       2257888776422    1346778888888853   234455554332 467


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+++|..+
T Consensus        83 ~~lv~e~~~~~~L   95 (275)
T cd05046          83 HYMILEYTDLGDL   95 (275)
T ss_pred             ceEEEEecCCCcH
Confidence            8999999988643

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=97.46  E-value=0.00062  Score=58.56  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             eeCCccccceEEEEeCC-c---cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDA-G---SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-g---~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .++.|..+.+|++...+ +   .+.+|.....    ....+..|...+..+..+  -.+.+++..... .+..+++||+.
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~iv~~~~~~~~-~~~~~lv~e~~   78 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH--PNIINLLGACEH-RGYLYLAIEYA   78 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccC--CCeeeEEEEEec-CCCceEEEEeC
Confidence            35677778999987643 2   3466665431    123466788888888654  234455554433 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      ++.++
T Consensus        79 ~~~~L   83 (270)
T cd05047          79 PHGNL   83 (270)
T ss_pred             CCCcH
Confidence            98743

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=97.46  E-value=0.0024  Score=55.37  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             eeeeeCCccccceEEEEeC-------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD-------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -+..++.|..+.+|++...       .+.+.+|......    ...+..|+..++.+..   ..+.+++..... ....+
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h---~~iv~~~~~~~~-~~~~~   84 (288)
T cd05050           9 YVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDH---PNIVKLLGVCAV-GKPMC   84 (288)
T ss_pred             ecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCC---CchheEEEEEcC-CCccE
Confidence            3467788888899998742       3478888876422    2345667777777742   234555554432 45789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      +++|+.+|..+
T Consensus        85 lv~e~~~~~~L   95 (288)
T cd05050          85 LLFEYMAYGDL   95 (288)
T ss_pred             EEEecCCCCCH
Confidence            99999998643

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=97.46  E-value=0.00092  Score=58.73  Aligned_cols=76  Identities=18%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             eeeeCCccccceEEEEeCC---------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           27 ICPVGGGCINLASRYGTDA---------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~---------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      .+.+|.|..+.||++...+         ..+++|+.....    ...+..|...+..+..+  -.+++++..... .+..
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h--~~i~~~~~~~~~-~~~~   99 (307)
T cd05098          23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH--KNIINLLGACTQ-DGPL   99 (307)
T ss_pred             eeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCC--CCEeeEEEEEec-CCce
Confidence            4678888888999986421         158888886421    12355688878777544  234555554333 4678


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++||++++..+
T Consensus       100 ~lv~e~~~~~~L  111 (307)
T cd05098         100 YVIVEYASKGNL  111 (307)
T ss_pred             EEEEecCCCCcH
Confidence            999999988643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=97.45  E-value=0.0016  Score=55.45  Aligned_cols=74  Identities=19%  Similarity=0.132  Sum_probs=49.5

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +.++.|..+.+|++...  +..+++|......     ...+..|...++.+..   ..+.+++..... ....++++||+
T Consensus         6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~---~~i~~~~~~~~~-~~~~~lv~e~~   81 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKH---PNLVKYYGVEVH-REKVYIFMEYC   81 (264)
T ss_pred             eEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCC---CChhheeeeEec-CCEEEEEEecC
Confidence            57788888899998763  3378888875321     2345677777777743   234455544332 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        82 ~~~~L   86 (264)
T cd06626          82 SGGTL   86 (264)
T ss_pred             CCCcH
Confidence            98744

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=97.45  E-value=0.0026  Score=54.90  Aligned_cols=76  Identities=14%  Similarity=0.062  Sum_probs=46.7

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC-C----cchHHHHHHHHHHHHhcCCCCCccceeecccCC----CceEE
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI-G----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT----GGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~----~~~~~   95 (299)
                      +..++.|..+.+|++....  ..|++|..... .    ...+..|...++.+.....-.+.+++.......    ...++
T Consensus         4 ~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l   83 (287)
T cd07838           4 LAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTL   83 (287)
T ss_pred             EEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEE
Confidence            3567777778999998753  38999988631 1    123556777888886421123445554432211    13789


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +|+++.+
T Consensus        84 ~~e~~~~   90 (287)
T cd07838          84 VFEHVDQ   90 (287)
T ss_pred             Eehhccc
Confidence            9998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=97.45  E-value=0.0045  Score=54.12  Aligned_cols=78  Identities=13%  Similarity=0.102  Sum_probs=50.5

Q ss_pred             eeeeeeeCCccccceEEEEe-C-CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           24 ITKICPVGGGCINLASRYGT-D-AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~-~-~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ..-++.++.|..+.+|++.. . +..+++|.....   ....+..|...++.+...   .+++++..... ....+++++
T Consensus        21 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~~-~~~~~lv~e   96 (296)
T cd06655          21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNP---NIVNFLDSFLV-GDELFVVME   96 (296)
T ss_pred             EEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCC---ceeeeeeeEec-CceEEEEEE
Confidence            44567888888889999864 2 348888876532   223456677777777432   23444443222 457899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        97 ~~~~~~L  103 (296)
T cd06655          97 YLAGGSL  103 (296)
T ss_pred             ecCCCcH
Confidence            9998743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=97.44  E-value=0.0027  Score=54.52  Aligned_cols=73  Identities=18%  Similarity=0.171  Sum_probs=46.3

Q ss_pred             eeCCccccceEEEEeCCc----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDAG----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .++.|..+.||+....++    .+++|......    ...+..|...++.+..   ..+++++..... ....+++|||+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~   77 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQH---SNLLQCLGQCTE-VTPYLLVMEFC   77 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCC---CCEeeEEEEEcC-CCCcEEEEECC
Confidence            467787889999875432    57888765421    1235567777777743   234555554332 45679999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        78 ~~g~L   82 (269)
T cd05087          78 PLGDL   82 (269)
T ss_pred             CCCcH
Confidence            88643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=97.43  E-value=0.0011  Score=59.09  Aligned_cols=70  Identities=10%  Similarity=-0.040  Sum_probs=44.3

Q ss_pred             eeCCccccceEEEEeC--CccEEEEecCCCCc-----------------chHHHHHHHHHHHHhcCCCCCccceeecccC
Q 022304           29 PVGGGCINLASRYGTD--AGSFFVKTNRSIGP-----------------SMFEGEALGLGAMYETRTIRAPRPFKVGALP   89 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~~-----------------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~   89 (299)
                      .++.|..+.+|++...  +..+++|.......                 ..+..|..+++.+..   -.+++++..... 
T Consensus        16 ~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-   91 (335)
T PTZ00024         16 HLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKH---ENIMGLVDVYVE-   91 (335)
T ss_pred             cccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCC---cceeeeeEEEec-
Confidence            4677888899998753  33788887753211                 124578887777753   123344443222 


Q ss_pred             CCceEEEEecccC
Q 022304           90 TGGSYIIMEFIEF  102 (299)
Q Consensus        90 ~~~~~~v~e~l~G  102 (299)
                      .+..+++||+++|
T Consensus        92 ~~~~~lv~e~~~~  104 (335)
T PTZ00024         92 GDFINLVMDIMAS  104 (335)
T ss_pred             CCcEEEEEecccc
Confidence            4678999999976

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=97.43  E-value=0.0013  Score=56.84  Aligned_cols=73  Identities=16%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.++.|..+.+|++...+ + .+++|.....     ....+..|.++++.+..   ..+++++..... .+..++++||
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~iv~e~   81 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRH---ENIVNLKEAFRR-KGRLYLVFEY   81 (288)
T ss_pred             EEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCC---CCeeehhheEEE-CCEEEEEEec
Confidence            4567888788899987643 3 7889976531     23457789988888863   234455544332 4678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      +++.
T Consensus        82 ~~~~   85 (288)
T cd07833          82 VERT   85 (288)
T ss_pred             CCCC
Confidence            9874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=97.43  E-value=0.0026  Score=54.41  Aligned_cols=76  Identities=20%  Similarity=0.060  Sum_probs=48.5

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      -+..++.|..+.+|++... ++ .+++|+.....   ...+..|+..++.+..   -.+++++..... .+..++++|++
T Consensus        13 ~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h---~~ii~~~~~~~~-~~~~~iv~e~~   88 (267)
T cd06646          13 LIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKH---CNIVAYFGSYLS-REKLWICMEYC   88 (267)
T ss_pred             hhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCC---CCeeeeeEEEEe-CCEEEEEEeCC
Confidence            3567788888899998853 33 68888875421   2345667777666532   223444443322 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        89 ~~~~L   93 (267)
T cd06646          89 GGGSL   93 (267)
T ss_pred             CCCcH
Confidence            88643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=97.42  E-value=0.0015  Score=55.71  Aligned_cols=72  Identities=14%  Similarity=0.067  Sum_probs=45.9

Q ss_pred             eeCCccccceEEEEe--C-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGT--D-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~--~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .++.|..+.+|+...  . .+ .+.+|+.....    ...+..|..+++.+..   ..+.+++....  ....+++|||+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h---~~ii~~~~~~~--~~~~~lv~e~~   76 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDN---PYIVRMIGVCE--AEALMLVMEMA   76 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCC---CCeEEEEEEEc--CCCeEEEEEeC
Confidence            367787888998653  2 23 57888876432    2346678888887743   23344444332  35779999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus        77 ~~~~L   81 (257)
T cd05115          77 SGGPL   81 (257)
T ss_pred             CCCCH
Confidence            98754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=97.42  E-value=0.0027  Score=54.82  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             ceeeeeeeCCccccceEEEEe-CCc-----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGT-DAG-----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-~~g-----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ...-++.++.|..+.+|+++. .++     .+.+|......    ...+..|...+..+..   -.+++++....  ...
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~--~~~   82 (279)
T cd05109           8 ELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGS---PYVCRLLGICL--TST   82 (279)
T ss_pred             heeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCC---CCCceEEEEEc--CCC
Confidence            344567888898899999874 333     36788875422    1234456655554432   23445554433  345


Q ss_pred             eEEEEecccCCC
Q 022304           93 SYIIMEFIEFGS  104 (299)
Q Consensus        93 ~~~v~e~l~G~~  104 (299)
                      .++++++.+++.
T Consensus        83 ~~l~~~~~~~g~   94 (279)
T cd05109          83 VQLVTQLMPYGC   94 (279)
T ss_pred             cEEEEEcCCCCC
Confidence            689999998864

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=97.41  E-value=0.0023  Score=54.26  Aligned_cols=74  Identities=18%  Similarity=0.081  Sum_probs=47.4

Q ss_pred             eeeCCccccceEEEEeC-C-ccEEEEecCCCC--------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           28 CPVGGGCINLASRYGTD-A-GSFFVKTNRSIG--------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~~--------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      +.++.|..+.+|+.... + ..+++|......        ...+..|...++.+..   ..+++.+..... ....++++
T Consensus         6 ~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~lv~   81 (258)
T cd06632           6 ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQH---PNIVQYLGTERE-EDNLYIFL   81 (258)
T ss_pred             ceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCC---CCchheeeeEec-CCeEEEEE
Confidence            45777777899998764 3 378888764311        1235667777766642   234455544332 46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus        82 e~~~~~~L   89 (258)
T cd06632          82 ELVPGGSL   89 (258)
T ss_pred             EecCCCcH
Confidence            99998643

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=97.41  E-value=0.0025  Score=54.98  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=50.0

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+..++.|..+.+|+....  +..+++|......    ...+..|+.+++.+..   -.+++++..... ....+++|||
T Consensus         8 ~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~   83 (277)
T cd06640           8 KLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS---PYVTKYYGSYLK-GTKLWIIMEY   83 (277)
T ss_pred             hhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEEE-CCEEEEEEec
Confidence            4567888888899998753  3378889875321    1335567776666632   235556654433 4678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        84 ~~~~~L   89 (277)
T cd06640          84 LGGGSA   89 (277)
T ss_pred             CCCCcH
Confidence            999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=97.41  E-value=0.001  Score=60.31  Aligned_cols=73  Identities=12%  Similarity=0.094  Sum_probs=45.1

Q ss_pred             eeeeCCccccceEEEEeC-C-ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-A-GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~   95 (299)
                      .+.+|.|..+.||++... + ..+++|.....     ....+..|..+++.+...   .+.+++......    ....++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~l   81 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHD---NVLSALDILQPPHIDPFEEIYV   81 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCC---CcCCHhheecCCCccccceEEE
Confidence            456888888999998853 3 37889976532     113356788888777532   233333322211    125789


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +++++.+
T Consensus        82 v~e~~~~   88 (372)
T cd07853          82 VTELMQS   88 (372)
T ss_pred             Eeecccc
Confidence            9999865

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=97.41  E-value=0.0019  Score=58.03  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=44.7

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCce
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~   93 (299)
                      -++.+|.|..+.||++...  +..+.+|.....  .   ...+.+|...++.+...   .+.+++......     ....
T Consensus        21 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~   97 (355)
T cd07874          21 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK---NIISLLNVFTPQKSLEEFQDV   97 (355)
T ss_pred             EEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCC---chhceeeeeecccccccccee
Confidence            3567888888999998753  337888876532  1   12345677777777532   223333221110     2356


Q ss_pred             EEEEecccCC
Q 022304           94 YIIMEFIEFG  103 (299)
Q Consensus        94 ~~v~e~l~G~  103 (299)
                      +++||+++|.
T Consensus        98 ~lv~e~~~~~  107 (355)
T cd07874          98 YLVMELMDAN  107 (355)
T ss_pred             EEEhhhhccc
Confidence            8999999763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=97.40  E-value=0.0014  Score=59.61  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             eeeeCCccccceEEEEe--CCccEEEEecCCC-------------C----cchHHHHHHHHHHHHhcCCCCCccceeecc
Q 022304           27 ICPVGGGCINLASRYGT--DAGSFFVKTNRSI-------------G----PSMFEGEALGLGAMYETRTIRAPRPFKVGA   87 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~--~~g~~vlK~~~~~-------------~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~   87 (299)
                      ...+|.|...-|-....  ++.-|.+|+-+..             .    ....++|+++++.|..   ..|.+++..-+
T Consensus       102 ~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H---~nVV~LiEvLD  178 (576)
T KOG0585|consen  102 IKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHH---PNVVKLIEVLD  178 (576)
T ss_pred             hhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCC---cCeeEEEEeec
Confidence            35677777655444332  2336778877531             0    1467899999999964   46777776644


Q ss_pred             cC-CCceEEEEecccCCCC
Q 022304           88 LP-TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        88 ~~-~~~~~~v~e~l~G~~~  105 (299)
                      +. ....|||+||+..++.
T Consensus       179 DP~s~~~YlVley~s~G~v  197 (576)
T KOG0585|consen  179 DPESDKLYLVLEYCSKGEV  197 (576)
T ss_pred             CcccCceEEEEEeccCCcc
Confidence            43 5789999999987643

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=97.40  E-value=0.0029  Score=54.56  Aligned_cols=74  Identities=15%  Similarity=0.063  Sum_probs=42.5

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.++.|..+.||++... +| .+++|......    ...+..|...+.....+  ..+++++..... .+..++++|+
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~iv~~~~~~~~-~~~~~lv~e~   81 (283)
T cd06617           5 VIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDC--PYTVTFYGALFR-EGDVWICMEV   81 (283)
T ss_pred             EEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCC--CCeeeeeEEEec-CCcEEEEhhh
Confidence            4567888888999998764 34 78889775421    11222333322222122  234444444322 4678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        82 ~~~   84 (283)
T cd06617          82 MDT   84 (283)
T ss_pred             hcc
Confidence            876

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=97.40  E-value=0.00055  Score=59.63  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=48.3

Q ss_pred             eeeeCCccccceEEEEeCC------c-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTDA------G-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~------g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ...++.|..+.+|++...+      + .+.+|......   ...+..|+..++.+..   -.+.+++..... .+..+++
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv   85 (291)
T cd05094          10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQH---EHIVKFYGVCGD-GDPLIMV   85 (291)
T ss_pred             eeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCC---CCcceEEEEEcc-CCceEEE
Confidence            3567888888999986421      2 46677765432   2346677777776643   234555554433 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|.++
T Consensus        86 ~e~~~~~~L   94 (291)
T cd05094          86 FEYMKHGDL   94 (291)
T ss_pred             EecCCCCcH
Confidence            999998754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=97.40  E-value=0.0033  Score=55.20  Aligned_cols=90  Identities=11%  Similarity=-0.011  Sum_probs=51.6

Q ss_pred             hHHHHHHhcCCCcceeeeeeeCCccccceEEEEeC--CccEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCcc
Q 022304           10 PIREWILSEGKATHITKICPVGGGCINLASRYGTD--AGSFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPR   81 (299)
Q Consensus        10 ~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~   81 (299)
                      ++++.+....+.........++.|..+.+|++...  +..+++|.....   .   ...+..|..+++.+...   -+.+
T Consensus         3 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~---niv~   79 (307)
T cd06607           3 EIAELFSKDDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHP---NTIE   79 (307)
T ss_pred             hHHHhhcCCCcchhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCC---CEEE
Confidence            34444443322222234567888888899998763  337888876421   1   12355677777776431   2233


Q ss_pred             ceeecccCCCceEEEEecccCC
Q 022304           82 PFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        82 ~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++..... .+..++++|+++|.
T Consensus        80 ~~~~~~~-~~~~~lv~e~~~g~  100 (307)
T cd06607          80 YKGCYLR-EHTAWLVMEYCLGS  100 (307)
T ss_pred             EEEEEEe-CCeEEEEHHhhCCC
Confidence            3333222 46789999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=97.39  E-value=0.0041  Score=54.89  Aligned_cols=75  Identities=12%  Similarity=-0.015  Sum_probs=46.5

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ......++.|..+.+|++... ++ .+++|......      ...+..|.++++.+..   -.+.+.+..... ....++
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~l  102 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKH---PNSIEYKGCYLR-EHTAWL  102 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCC---CCEEEEEEEEee-CCeEEE
Confidence            345677888888899998763 33 78888765321      1235567776666642   123333333222 457899


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +|||+.|
T Consensus       103 v~e~~~g  109 (317)
T cd06635         103 VMEYCLG  109 (317)
T ss_pred             EEeCCCC
Confidence            9999987

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=97.39  E-value=0.0025  Score=55.34  Aligned_cols=75  Identities=12%  Similarity=0.004  Sum_probs=46.6

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.++.|..+.+|.+....  ..|++|......      ...+..|..+++.+...   .+...+..... .+..+++|+
T Consensus         5 ~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~---~i~~~~~~~~~-~~~~~lv~e   80 (285)
T cd05630           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSR---FVVSLAYAYET-KDALCLVLT   80 (285)
T ss_pred             eEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCC---CeeeeeEEEec-CCEEEEEEE
Confidence            4567888888999887642  378888764311      12244677777777432   22223332222 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        81 ~~~g~~L   87 (285)
T cd05630          81 LMNGGDL   87 (285)
T ss_pred             ecCCCcH
Confidence            9998744

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=97.39  E-value=0.0013  Score=56.23  Aligned_cols=74  Identities=14%  Similarity=0.023  Sum_probs=46.6

Q ss_pred             eeeCCccccceEEEEe--CCccEEEEecCC-C-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGT--DAGSFFVKTNRS-I-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~--~~g~~vlK~~~~-~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +.++.|..+.+|++..  ++..+++|.... .     ....+..|...++.+..   -.+++++..... .+..+++|++
T Consensus         8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~~v~e~   83 (267)
T cd08229           8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH---PNVIKYYASFIE-DNELNIVLEL   83 (267)
T ss_pred             hhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccC---CchhhhhheeEe-CCeEEEEEEe
Confidence            4567777788999885  334888886542 1     11335567777776643   234444443322 4688999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        84 ~~~~~L   89 (267)
T cd08229          84 ADAGDL   89 (267)
T ss_pred             cCCCCH
Confidence            998744

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=97.38  E-value=0.0013  Score=59.62  Aligned_cols=184  Identities=16%  Similarity=0.122  Sum_probs=108.3

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeec-ccC-----CCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVG-ALP-----TGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~-~~~-----~~~~~~v~e~l  100 (299)
                      .+-++.|-...||+-...+..+.||+++......+..|.++++..    +..-+.++.+- ..+     .-..++|++|-
T Consensus       215 ~eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp----~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh  290 (534)
T KOG3653|consen  215 LELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLP----GMKHENILQFIGAEKRGTADRMEYWLVTEFH  290 (534)
T ss_pred             HHHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhcc----CccchhHHHhhchhccCCccccceeEEeeec
Confidence            344577888899999998889999999876666778888877654    34445555331 111     12678888887


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHH
Q 022304          101 EFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGH  180 (299)
Q Consensus       101 ~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (299)
                      +-+.+       -+.|.. |.                          -+|.+..   ++..-+            .+-++
T Consensus       291 ~kGsL-------~dyL~~-nt--------------------------isw~~~c---ria~Sm------------arGLa  321 (534)
T KOG3653|consen  291 PKGSL-------CDYLKA-NT--------------------------ISWNSLC---RIAESM------------ARGLA  321 (534)
T ss_pred             cCCcH-------HHHHHh-cc--------------------------ccHHHHH---HHHHHH------------HHHHH
Confidence            66533       222221 00                          1343221   121111            11122


Q ss_pred             HHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cc---cCCchhhhhh-h-hhcCCChhhHHHhhhhCC
Q 022304          181 RLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CY---YGHNEAEFGM-S-WCAGFGGSFYNSYFEVMP  254 (299)
Q Consensus       181 ~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~---~g~~~~Dla~-~-~~~~~~~~f~~~Y~~~~~  254 (299)
                      .+-+.++  ..+ ...+.+.|+|+++.|||+.+|..-.|-||. ++   .|-+.-|... . ....+....+||--....
T Consensus       322 ~LHee~p--~~d-~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d  398 (534)
T KOG3653|consen  322 HLHEELP--RGD-HHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQD  398 (534)
T ss_pred             HhcccCC--cCC-CCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhccccc
Confidence            2222222  112 367899999999999999888766788874 43   4555555542 1 112355677777665432


Q ss_pred             CCCCHHHHHHHHHH
Q 022304          255 KQPGFEKRRDLYML  268 (299)
Q Consensus       255 l~~~~~~r~~~~~l  268 (299)
                        ++...|+.+|.+
T Consensus       399 --~~Afkr~DvYam  410 (534)
T KOG3653|consen  399 --RDAFKRIDVYAM  410 (534)
T ss_pred             --HHHHHHHHHHHH
Confidence              455688999864

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=97.38  E-value=0.0017  Score=57.29  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             ceeeeeeeCCccccceEEEEeC---------CccEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccC
Q 022304           23 HITKICPVGGGCINLASRYGTD---------AGSFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP   89 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~---------~g~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~   89 (299)
                      ...-...++.|..+.+|+++..         ...+.+|..... .   ...+..|...++.+..+  -.+.+++..... 
T Consensus        13 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~iv~~~~~~~~-   89 (314)
T cd05099          13 RLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKH--KNIINLLGVCTQ-   89 (314)
T ss_pred             HeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCC--CCeeeEEEEEcc-
Confidence            3444577888888999998631         125788887642 1   12355788777777543  245555554432 


Q ss_pred             CCceEEEEecccCCCC
Q 022304           90 TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        90 ~~~~~~v~e~l~G~~~  105 (299)
                      .+..+++||+++|..+
T Consensus        90 ~~~~~lv~e~~~~g~L  105 (314)
T cd05099          90 EGPLYVIVEYAAKGNL  105 (314)
T ss_pred             CCceEEEEecCCCCcH
Confidence            4678999999998744

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=97.38  E-value=0.0015  Score=55.46  Aligned_cols=75  Identities=17%  Similarity=0.142  Sum_probs=49.9

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.++.|..+.+|++...+  +.+++|.....     ....+..|+..++.+..   ..+++++..... .+..++++|+
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h---~~i~~~~~~~~~-~~~~~lv~e~   80 (257)
T cd08225           5 IKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKH---PNIVTFFASFQE-NGRLFIVMEY   80 (257)
T ss_pred             EEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCC---CChhhhhheecc-CCeEEEEEec
Confidence            4567778788999988743  37888876431     23456678888877753   234445544332 4688999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        81 ~~~~~L   86 (257)
T cd08225          81 CDGGDL   86 (257)
T ss_pred             CCCCcH
Confidence            988643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=97.38  E-value=0.0019  Score=56.73  Aligned_cols=77  Identities=13%  Similarity=0.067  Sum_probs=50.4

Q ss_pred             eeeeeCCccccceEEEEeC------C-ccEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD------A-GSFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~------~-g~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -.+.++.|..+.+|+.+..      . ..+.+|..... .   ...+..|..+++.+.++  -.+.+++..... .+..+
T Consensus        39 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~iv~~~~~~~~-~~~~~  115 (302)
T cd05055          39 FGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNH--ENIVNLLGACTI-GGPIL  115 (302)
T ss_pred             EcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCC--CCcceEEEEEec-CCceE
Confidence            3466788888889987631      1 25778876532 1   23466788888888544  245555554433 46789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+++|..+
T Consensus       116 lv~e~~~~~~L  126 (302)
T cd05055         116 VITEYCCYGDL  126 (302)
T ss_pred             EEEEcCCCCcH
Confidence            99999998744

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=97.37  E-value=0.0036  Score=54.13  Aligned_cols=74  Identities=14%  Similarity=0.074  Sum_probs=46.0

Q ss_pred             eeeCCccccceEEEEeCC-c-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           28 CPVGGGCINLASRYGTDA-G-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ..++.|..+.+|++.... + .+.+|......   ...+..|...++.+..   -.+++++..... .+..++++||++|
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h---~~ii~~~~~~~~-~~~~~~v~e~~~~   86 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDH---PNIVKLLDAFYY-ENNLWILIEFCAG   86 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCC---CCeeeEEEEEee-CCEEEEEEEecCC
Confidence            346677778899987653 3 56677665322   2335567777777743   234445443322 4678999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        87 ~~l   89 (282)
T cd06643          87 GAV   89 (282)
T ss_pred             CcH
Confidence            743

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=97.37  E-value=0.0013  Score=56.69  Aligned_cols=75  Identities=16%  Similarity=0.067  Sum_probs=47.2

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++.++.|..+.+|+.... .+ .+++|......    ...+..|+..++.+..   -.+++++..... ....++++|++
T Consensus         9 ~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   84 (277)
T cd06642           9 LERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS---PYITRYYGSYLK-GTKLWIIMEYL   84 (277)
T ss_pred             HHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCC---CccHhhhccccc-CCceEEEEEcc
Confidence            345677878899998653 33 78889876321    2345677777766642   234444443322 45789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        85 ~~~~L   89 (277)
T cd06642          85 GGGSA   89 (277)
T ss_pred             CCCcH
Confidence            98643

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.37  E-value=0.0028  Score=53.78  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             eeCCccccceEEEEeCCc------------cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           29 PVGGGCINLASRYGTDAG------------SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g------------~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      .++.|..+.+|+....+.            .+++|......  ...+..|...++.+..   ..+.+++.....  +..+
T Consensus         2 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~--~~~~   76 (259)
T cd05037           2 HLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSH---KHLVKLYGVCVR--DENI   76 (259)
T ss_pred             cccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCC---cchhheeeEEec--CCcE
Confidence            467777788998776432            25667655422  2345567766666632   234444444322  5679


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      +++||++|..+
T Consensus        77 lv~e~~~~~~L   87 (259)
T cd05037          77 MVEEYVKFGPL   87 (259)
T ss_pred             EEEEcCCCCcH
Confidence            99999998743

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=97.36  E-value=0.0024  Score=55.17  Aligned_cols=73  Identities=11%  Similarity=0.066  Sum_probs=46.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +..++.|..+.+|++... ++ .+++|.....     ....+..|+.+++.+..   -.+.+++..... ....+++|||
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~~-~~~~~~v~e~   81 (286)
T cd07847           6 LSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKH---PNLVNLIEVFRR-KRKLHLVFEY   81 (286)
T ss_pred             eeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCC---CCEeeeeeEEee-CCEEEEEEec
Confidence            456788888899998764 23 7888876421     12335578887777743   123444433322 4578999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      ++|.
T Consensus        82 ~~~~   85 (286)
T cd07847          82 CDHT   85 (286)
T ss_pred             cCcc
Confidence            9874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=97.36  E-value=0.0029  Score=55.86  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             ceeeeeeeCCccccceEEEEe-CCc-----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGT-DAG-----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-~~g-----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ....+..+|.|..+.||+... .++     .+.+|......    ...+..|...++.+..   -.+.+++....  .+.
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~~~g~~~--~~~   82 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN---PHVCRLLGICL--TST   82 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CCCCeEEEEEc--CCC
Confidence            344567889898899999864 223     37888875321    2335567777766642   23455555443  346


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++++++++..+
T Consensus        83 ~~~v~e~~~~g~l   95 (316)
T cd05108          83 VQLITQLMPFGCL   95 (316)
T ss_pred             ceeeeecCCCCCH
Confidence            6889999887643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=97.36  E-value=0.0018  Score=55.55  Aligned_cols=77  Identities=14%  Similarity=0.042  Sum_probs=47.9

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~~~v~   97 (299)
                      .+.++.|..+.+|+....+  ..+++|.....  ....+..|...+..+..+  -.+.+.+......     ....+++|
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h--~~i~~~~~~~~~~~~~~~~~~~~iv~   88 (272)
T cd06637          11 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHH--RNIATYYGAFIKKNPPGMDDQLWLVM   88 (272)
T ss_pred             HHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCC--CCeeeEeeEEeecCCCCCCcEEEEEE
Confidence            4567778888999987532  36888887532  234567788888777543  2334444322110     23578999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        89 e~~~~~~L   96 (272)
T cd06637          89 EFCGAGSV   96 (272)
T ss_pred             EcCCCCcH
Confidence            99988643

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=97.36  E-value=0.0036  Score=54.11  Aligned_cols=74  Identities=14%  Similarity=0.073  Sum_probs=48.1

Q ss_pred             eeeCCccccceEEEEe---C--C-ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           28 CPVGGGCINLASRYGT---D--A-GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~---~--~-g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      +.++.|..+.+|+...   +  . ..+.+|......    ...+..|..+++.+..   -.+++++..... ....+++|
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~-~~~~~lv~   86 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHH---PNIVCLLGVVTQ-EQPVCMLF   86 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCC---CCeeeEEEEEec-CCceEEEE
Confidence            6678888889999763   1  2 267788775321    1346678888877743   234555554332 45789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||+++.++
T Consensus        87 e~~~~~~L   94 (283)
T cd05090          87 EYLNQGDL   94 (283)
T ss_pred             EcCCCCcH
Confidence            99998644

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.36  E-value=0.00018  Score=59.37  Aligned_cols=75  Identities=13%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             eeeeCCccccceEEEE--eCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYG--TDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~--~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~l~G~  103 (299)
                      +.++|.|-.+.||.-.  +++.+.|+|+-.+.-...+.+|+.+|+.|+.  +-.+-+++...... ...+.+++|++...
T Consensus        43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~g--g~NIi~L~DiV~Dp~SktpaLiFE~v~n~  120 (338)
T KOG0668|consen   43 VRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRG--GPNIIKLLDIVKDPESKTPSLIFEYVNNT  120 (338)
T ss_pred             HHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccC--CCCeeehhhhhcCccccCchhHhhhhccc
Confidence            4678999899999855  4556899999877656779999999999974  33344444332221 23566666666554

>PTZ00036 glycogen synthase kinase; Provisional

Probab=97.35  E-value=0.0034  Score=58.40  Aligned_cols=75  Identities=13%  Similarity=0.007  Sum_probs=46.1

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCcccee---ecccC----CCceE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFK---VGALP----TGGSY   94 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~---~~~~~----~~~~~   94 (299)
                      ..-.+.+|.|..+.||++... .+ .+.+|..... .....+|+.+++.|...   .+.+++.   .....    ....+
T Consensus        68 y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~-~~~~~~Ei~il~~l~h~---niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         68 YKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD-PQYKNRELLIMKNLNHI---NIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             EEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC-cchHHHHHHHHHhcCCC---CCcceeeeEeecccccCCCceEEE
Confidence            344577888888999998763 33 7888876542 23346789888888532   2333322   11111    12356


Q ss_pred             EEEecccC
Q 022304           95 IIMEFIEF  102 (299)
Q Consensus        95 ~v~e~l~G  102 (299)
                      ++|||++|
T Consensus       144 lvmE~~~~  151 (440)
T PTZ00036        144 VVMEFIPQ  151 (440)
T ss_pred             EEEecCCc
Confidence            89999986

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=97.35  E-value=0.0041  Score=53.56  Aligned_cols=75  Identities=17%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             eeeeCCccccceEEEEeC-------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ...++.|..+.+|+....       ...+.+|......    ...+..|...++.+..   -.+++++..... .+..++
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~---~~iv~~~~~~~~-~~~~~l   86 (277)
T cd05062          11 SRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNC---HHVVRLLGVVSQ-GQPTLV   86 (277)
T ss_pred             eeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CCeeeEEEEEcC-CCCeEE
Confidence            456788877889976532       1268888764321    1224566766666532   234445544322 467899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +||+++|.++
T Consensus        87 v~e~~~~~~L   96 (277)
T cd05062          87 IMELMTRGDL   96 (277)
T ss_pred             EEecCCCCCH
Confidence            9999998743

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=97.35  E-value=0.0022  Score=55.40  Aligned_cols=77  Identities=14%  Similarity=0.031  Sum_probs=48.2

Q ss_pred             eeeeCCccccceEEEEeC-C-ccEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeeccc-----CCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD-A-GSFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL-----PTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~-----~~~~~~~v~   97 (299)
                      ++.++.|..+.+|++... . ..+.+|+....  ....+..|...++.+..+  -.+.+.+.....     .....+++|
T Consensus        21 ~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h--~~i~~~~~~~~~~~~~~~~~~~~iv~   98 (282)
T cd06636          21 VEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHH--RNIATYYGAFIKKSPPGHDDQLWLVM   98 (282)
T ss_pred             heeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCC--CcEEEEeeehhcccccCCCCEEEEEE
Confidence            467888888899998763 2 37888887542  223466777777777543  123334333211     024679999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        99 e~~~~~~L  106 (282)
T cd06636          99 EFCGAGSV  106 (282)
T ss_pred             EeCCCCcH
Confidence            99988644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=97.35  E-value=0.0017  Score=56.06  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e   98 (299)
                      +..++.|..+.+|++...+ + .+++|......     ...+..|+.+++.+..   -.+.+++...... .+..+++++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRH---PNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccC---CCeeeheeeEecCCCCcEEEEec
Confidence            4567888889999998653 3 78888876421     2235678888877753   1233344333221 267899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      ++++
T Consensus        81 ~~~~   84 (287)
T cd07840          81 YMDH   84 (287)
T ss_pred             cccc
Confidence            9975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=97.35  E-value=0.0021  Score=55.93  Aligned_cols=75  Identities=21%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             eeeeCCccccceEEEEeCCc------------------cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCcccee
Q 022304           27 ICPVGGGCINLASRYGTDAG------------------SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFK   84 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g------------------~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~   84 (299)
                      ++.+|.|..+.+|+++..+.                  .+++|......    ...+..|+++++.+..   -.+.+++.
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~   86 (296)
T cd05051          10 VEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSD---PNIARLLG   86 (296)
T ss_pred             cccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCC---CCEeEEEE
Confidence            46778888888998765321                  36778765421    2345678888887753   23444554


Q ss_pred             ecccCCCceEEEEecccCCCC
Q 022304           85 VGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        85 ~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      .... ++..++++++++|..+
T Consensus        87 ~~~~-~~~~~lv~e~~~~~~L  106 (296)
T cd05051          87 VCTV-DPPLCMIMEYMENGDL  106 (296)
T ss_pred             EEec-CCCcEEEEecCCCCCH
Confidence            4332 4688999999998643

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=97.34  E-value=0.0021  Score=56.40  Aligned_cols=74  Identities=18%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~   97 (299)
                      -+..++.|..+.+|++...  +..+++|.....     .......|..+++.+...   .+.+++..-... .+..+++|
T Consensus        11 ~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---~i~~~~~~~~~~~~~~~~lv~   87 (309)
T cd07845          11 KLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHP---NIVELKEVVVGKHLDSIFLVM   87 (309)
T ss_pred             EeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCC---CCcceEEEEecCCCCeEEEEE
Confidence            4556788888899998863  237888876521     122345788888887542   233444332111 24679999


Q ss_pred             ecccC
Q 022304           98 EFIEF  102 (299)
Q Consensus        98 e~l~G  102 (299)
                      |+.++
T Consensus        88 e~~~~   92 (309)
T cd07845          88 EYCEQ   92 (309)
T ss_pred             ecCCC
Confidence            99876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=97.34  E-value=0.0029  Score=54.20  Aligned_cols=78  Identities=26%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      +...+.++.|....+|++... .+    .+.+|......    ...+..|...++.+..   ..+.+++..... .+..+
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~   82 (268)
T cd05063           7 ITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSH---HNIIRLEGVVTK-FKPAM   82 (268)
T ss_pred             ceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCC---CCeeEEEEEEcc-CCCcE
Confidence            344567888888899998753 22    57788765421    2335567766666532   234555544332 46789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+++|..+
T Consensus        83 lv~e~~~~~~L   93 (268)
T cd05063          83 IITEYMENGAL   93 (268)
T ss_pred             EEEEcCCCCCH
Confidence            99999988744

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=97.33  E-value=0.0028  Score=53.90  Aligned_cols=72  Identities=18%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             eeCCccccceEEEEe--CC---ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           29 PVGGGCINLASRYGT--DA---GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~--~~---g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+|.|..+.+|+...  .+   ..+++|......    ...+..|...++.+..   ..+.+++....  ....+++|++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~--~~~~~~v~e~   76 (257)
T cd05060           2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDH---PCIVRLIGVCK--GEPLMLVMEL   76 (257)
T ss_pred             ccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCC---CCeeeEEEEEc--CCceEEEEEe
Confidence            467777788888643  22   368889876432    1235567777766642   23444554432  3467999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|.++
T Consensus        77 ~~~~~L   82 (257)
T cd05060          77 APLGPL   82 (257)
T ss_pred             CCCCcH
Confidence            988643

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=97.33  E-value=0.0039  Score=53.30  Aligned_cols=76  Identities=20%  Similarity=0.069  Sum_probs=46.1

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-----C---cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEE
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~   95 (299)
                      .+.++.|..+.+|+....+ + .+.+|.....     .   ...+..|+..++.+..   -.+++.+...... ....++
T Consensus         7 ~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~~~~~~~~~   83 (265)
T cd06652           7 GKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLH---ERIVQYYGCLRDPMERTLSI   83 (265)
T ss_pred             eeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCC---CCeeeEEeEeccCCCceEEE
Confidence            4567777778899987533 3 7888865321     1   1245668888877743   2344444432221 245778


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      ++++++|..+
T Consensus        84 v~e~~~~~~L   93 (265)
T cd06652          84 FMEHMPGGSI   93 (265)
T ss_pred             EEEecCCCcH
Confidence            9999988743

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=97.33  E-value=0.0018  Score=55.85  Aligned_cols=72  Identities=14%  Similarity=0.060  Sum_probs=43.2

Q ss_pred             eCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           30 VGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++.|..+.||++... .| .|.+|.....      ....+..|..+++.++.   -.+++.+..... .+..++++++++
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~lv~e~~~   76 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSS---RFIVSLAYAFET-KDDLCLVMTLMN   76 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCC---CCEeeeeeEEec-CCeEEEEEecCC
Confidence            356667889998753 34 7888876531      12233467777776642   122333322222 467899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        77 ~~~L   80 (277)
T cd05577          77 GGDL   80 (277)
T ss_pred             CCcH
Confidence            8644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=97.33  E-value=0.003  Score=53.76  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=44.1

Q ss_pred             eeCCccccceEEEEe----CCccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           29 PVGGGCINLASRYGT----DAGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~----~~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .++.|..+.||+...    .+..+.+|+.....     ...+..|...++.+..   ..+.+++....  ....+++|++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~--~~~~~lv~e~   76 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDN---PYIVRMIGICE--AESWMLVMEL   76 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCC---CCcceEEEEEc--CCCcEEEEec
Confidence            467787889998642    22378889875321     1335566766666632   23444554432  3466899999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      .++.++
T Consensus        77 ~~~~~L   82 (257)
T cd05116          77 AELGPL   82 (257)
T ss_pred             CCCCcH
Confidence            987644

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=97.33  E-value=0.0044  Score=55.15  Aligned_cols=76  Identities=16%  Similarity=0.134  Sum_probs=49.2

Q ss_pred             eeeeCCccccceEEEEeCC---------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           27 ICPVGGGCINLASRYGTDA---------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~---------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      ...++.|..+.+|++...+         ..+.+|......    ...+..|..+++.+..+  -.+.+++..... .+..
T Consensus        17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~iv~~~~~~~~-~~~~   93 (334)
T cd05100          17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKH--KNIINLLGACTQ-DGPL   93 (334)
T ss_pred             cceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCC--CCeeeeeEEEcc-CCce
Confidence            4678888889999986311         157888775321    23466788888877544  134445544332 4678


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++++|++|..+
T Consensus        94 ~lv~e~~~~g~L  105 (334)
T cd05100          94 YVLVEYASKGNL  105 (334)
T ss_pred             EEEEecCCCCcH
Confidence            999999988643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=97.33  E-value=0.0023  Score=55.55  Aligned_cols=75  Identities=17%  Similarity=0.162  Sum_probs=47.1

Q ss_pred             eeeeCCccccceEEEEeC-------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.++.|..+.||+....       ...+.+|......    ...+..|..+++.+..   -.+++++..... .+..++
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~l   86 (288)
T cd05061          11 LRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTC---HHVVRLLGVVSK-GQPTLV   86 (288)
T ss_pred             eeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCC---CCeeeEEEEEcC-CCCcEE
Confidence            467888888999987532       1268888765321    1223456666665532   245666654332 457899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|.++
T Consensus        87 v~e~~~~g~L   96 (288)
T cd05061          87 VMELMAHGDL   96 (288)
T ss_pred             EEeCCCCCCH
Confidence            9999998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.33  E-value=0.00018  Score=71.35  Aligned_cols=131  Identities=17%  Similarity=0.220  Sum_probs=77.4

Q ss_pred             eeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccce-eecccCCCceEEEEe
Q 022304           28 CPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPF-KVGALPTGGSYIIME   98 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~-~~~~~~~~~~~~v~e   98 (299)
                      .-||.|..+.|..|.-.. + -|..|+-..      ..-+.+..|.+++.+-..   --+..+. ++.+  +..-|+||+
T Consensus        81 KvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns---~Wiv~LhyAFQD--~~~LYlVMd  155 (1317)
T KOG0612|consen   81 KVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNS---EWIVQLHYAFQD--ERYLYLVMD  155 (1317)
T ss_pred             HHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCc---HHHHHHHHHhcC--ccceEEEEe
Confidence            346788888888887632 2 455565433      122556777777633211   1122222 2222  467899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |.+|+++       ...|.+          |+ +       .      .++|..||... +                   
T Consensus       156 Y~pGGDl-------ltLlSk----------~~-~-------~------pE~~ArFY~aE-i-------------------  184 (1317)
T KOG0612|consen  156 YMPGGDL-------LTLLSK----------FD-R-------L------PEDWARFYTAE-I-------------------  184 (1317)
T ss_pred             cccCchH-------HHHHhh----------cC-C-------C------hHHHHHHHHHH-H-------------------
Confidence            9999733       222222          22 0       1      14777777532 1                   


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                          +-.+..+.     ..++||+|++|+|||+|..|.+-+=||.
T Consensus       185 ----VlAldslH-----~mgyVHRDiKPDNvLld~~GHikLADFG  220 (1317)
T KOG0612|consen  185 ----VLALDSLH-----SMGYVHRDIKPDNVLLDKSGHIKLADFG  220 (1317)
T ss_pred             ----HHHHHHHH-----hccceeccCCcceeEecccCcEeeccch
Confidence                11111121     3689999999999999999988888875

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=97.33  E-value=0.0029  Score=54.74  Aligned_cols=27  Identities=30%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|+.|.||+++.++...|+|+.
T Consensus       116 ~~i~H~di~p~nili~~~~~~kl~dfg  142 (278)
T cd05606         116 RFVVYRDLKPANILLDEHGHVRISDLG  142 (278)
T ss_pred             CCEEcCCCCHHHEEECCCCCEEEccCc
Confidence            469999999999999988878899974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=97.32  E-value=0.0015  Score=59.93  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             eeeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.+|.|..+.||++...+       ..+.+|......    ...+..|..++..|..+  -.+++++..... .+..++
T Consensus        42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H--~niv~~~~~~~~-~~~~~i  118 (401)
T cd05107          42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPH--LNIVNLLGACTK-GGPIYI  118 (401)
T ss_pred             hhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCC--CCeEEEEEEEcc-CCCcEE
Confidence            4678999999999987421       268888876421    12456788888777533  234555554433 467899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|.++
T Consensus       119 v~E~~~~g~L  128 (401)
T cd05107         119 ITEYCRYGDL  128 (401)
T ss_pred             EEeccCCCcH
Confidence            9999999765

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=97.32  E-value=0.0025  Score=56.52  Aligned_cols=73  Identities=12%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             eeCCc--cccceEEEEeC-Cc-cEEEEecCCC-C----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           29 PVGGG--CINLASRYGTD-AG-SFFVKTNRSI-G----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        29 ~~~~G--~~n~~y~v~~~-~g-~~vlK~~~~~-~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+|.|  ....+|++... +| .+.+|..... .    ...+..|..+++.+..   -.+.+++..... ++..++++|+
T Consensus         5 ~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h---pniv~~~~~~~~-~~~~~lv~e~   80 (327)
T cd08227           5 VIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNH---PNIVPYRATFIA-DNELWVVTSF   80 (327)
T ss_pred             hccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCC---CCeeeEEEEEEE-CCEEEEEEec
Confidence            35555  34578887663 34 6778876532 1    1346678877777743   234445544332 5678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        81 ~~~~~l   86 (327)
T cd08227          81 MAYGSA   86 (327)
T ss_pred             cCCCcH
Confidence            998743

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=97.32  E-value=0.0015  Score=61.25  Aligned_cols=73  Identities=11%  Similarity=0.012  Sum_probs=45.3

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC--CcchHHHHHHHHHHHHhcCC---CCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI--GPSMFEGEALGLGAMYETRT---IRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~---~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+-+|.|....|.+.....  ..+.+|+-...  ....-..|+.+|+.|.++.+   --+-+.+.+--. .+..++|.|-
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~f-r~HlciVfEL  269 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYF-RNHLCIVFEL  269 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccc-ccceeeeehh
Confidence            5778999889999987643  36788998753  22344679999999985421   223333333222 3455666654


Q ss_pred             c
Q 022304          100 I  100 (299)
Q Consensus       100 l  100 (299)
                      +
T Consensus       270 L  270 (586)
T KOG0667|consen  270 L  270 (586)
T ss_pred             h
Confidence            4

>PTZ00284 protein kinase; Provisional

Probab=97.32  E-value=0.0026  Score=59.58  Aligned_cols=77  Identities=13%  Similarity=-0.038  Sum_probs=47.5

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCC--CcchHHHHHHHHHHHHhcCCC---CCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSI--GPSMFEGEALGLGAMYETRTI---RAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~---~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -+..+|.|..+.||++....  ..+.+|+....  .......|..+++.+......   .+++++.+.....+..+++|+
T Consensus       133 i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~  212 (467)
T PTZ00284        133 ILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMP  212 (467)
T ss_pred             EEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEe
Confidence            34678889889999987632  36888987532  122356788888887653212   244444433221356788888


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      +..+
T Consensus       213 ~~g~  216 (467)
T PTZ00284        213 KYGP  216 (467)
T ss_pred             ccCC
Confidence            7743

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=97.31  E-value=0.002  Score=55.36  Aligned_cols=74  Identities=15%  Similarity=0.014  Sum_probs=47.2

Q ss_pred             eeeCCccccceEEEEeC-C-ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           28 CPVGGGCINLASRYGTD-A-GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ..++.|..+.+|+.... + ..+++|......    ...+..|..+++.+..   ..+.+++..... ....++++|+++
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v~e~~~   82 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRS---PYITKYYGSFLK-GSKLWIIMEYCG   82 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCC---CCeeeeeEEEEE-CCeEEEEEEeeC
Confidence            45667777899998764 2 378899876421    1345678887777753   123334433222 457899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        83 ~~~L   86 (274)
T cd06609          83 GGSC   86 (274)
T ss_pred             CCcH
Confidence            8644

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=97.31  E-value=0.0011  Score=57.97  Aligned_cols=75  Identities=15%  Similarity=0.178  Sum_probs=48.4

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ...++.|..+.+|+.... ++ .+++|.....   ....+..|...++.+..   ..+++++..... ....+++||+++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~~  100 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQH---ENVVEMYNSYLV-GDELWVVMEFLE  100 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCC---cchhheeeEEEe-CCEEEEEEecCC
Confidence            456888888899998763 34 7888876431   12345667777777653   234445443222 467899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus       101 ~~~L  104 (292)
T cd06657         101 GGAL  104 (292)
T ss_pred             CCcH
Confidence            9744

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=97.31  E-value=0.0028  Score=54.58  Aligned_cols=74  Identities=14%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC--Cc--chHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI--GP--SMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~--~~--~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~   99 (299)
                      +..++.|..+.+|++...  +..+.+|.....  ..  .....|...+..+..+  -.+++++...... .+..++++||
T Consensus         4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h--~~i~~~~~~~~~~~~~~~~lv~e~   81 (282)
T cd07831           4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPH--PNILRLIEVLFDRKTGRLALVFEL   81 (282)
T ss_pred             EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCC--CCccceEEEEecCCCCcEEEEEec
Confidence            456787888899999863  237888876542  11  1123566666666543  2355566544331 2678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      .+|
T Consensus        82 ~~~   84 (282)
T cd07831          82 MDM   84 (282)
T ss_pred             CCc
Confidence            975

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=97.31  E-value=0.0021  Score=56.08  Aligned_cols=75  Identities=19%  Similarity=0.186  Sum_probs=45.9

Q ss_pred             eeeCCccccceEEEEeC-Cc---cEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTD-AG---SFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g---~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +.++.|..+.+|++... ++   .+.+|..... .   ...+..|...+..+..+  -.+.+++..... .+..++++++
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~h--p~iv~~~~~~~~-~~~~~lv~e~   84 (297)
T cd05089           8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHH--PNIINLLGACEN-RGYLYIAIEY   84 (297)
T ss_pred             eeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCC--CchhheEEEEcc-CCcceEEEEe
Confidence            45777888899998753 23   2455655431 1   13356788878777543  123445544332 4678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      .++.++
T Consensus        85 ~~~~~L   90 (297)
T cd05089          85 APYGNL   90 (297)
T ss_pred             cCCCcH
Confidence            987633

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=97.30  E-value=0.0031  Score=54.99  Aligned_cols=76  Identities=17%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             eeeeeCCccccceEEEEeCC-----------------c-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccce
Q 022304           26 KICPVGGGCINLASRYGTDA-----------------G-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPF   83 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-----------------g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~   83 (299)
                      -.+.++.|..+.+|++...+                 + .+.+|......    ...+..|+..++.+..   ..+++++
T Consensus         9 ~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~---~~i~~~~   85 (296)
T cd05095           9 FKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKD---PNIIRLL   85 (296)
T ss_pred             eeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CCcceEE
Confidence            35678889889999875321                 1 46778776421    2346678888887753   3455666


Q ss_pred             eecccCCCceEEEEecccCCCC
Q 022304           84 KVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        84 ~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      ..... .+..+++||+.+|..+
T Consensus        86 ~~~~~-~~~~~lv~e~~~~~~L  106 (296)
T cd05095          86 AVCIT-SDPLCMITEYMENGDL  106 (296)
T ss_pred             EEEec-CCccEEEEEeCCCCcH
Confidence            55433 4678999999988644

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=97.30  E-value=0.0033  Score=53.24  Aligned_cols=76  Identities=16%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.++.|..+.+|++...  +..+++|.....     ....+..|+..++.+..   -.+++++..... .+..++++|
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~lv~e   79 (256)
T cd08220           4 KIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSH---PNIIEYYENFLE-DKALMIVME   79 (256)
T ss_pred             EEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCC---CchhheeeeEec-CCEEEEEEe
Confidence            3567788888889987763  347888876532     12346678877777743   123444433222 467899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      +++|..+
T Consensus        80 ~~~~~~L   86 (256)
T cd08220          80 YAPGGTL   86 (256)
T ss_pred             cCCCCCH
Confidence            9999744

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=97.30  E-value=0.0025  Score=54.00  Aligned_cols=75  Identities=13%  Similarity=-0.002  Sum_probs=47.6

Q ss_pred             eeeeCCccccceEEEEeC-C-ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-A-GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.++.|..+.+|++... + ..|++|.....     ....+..|...++.+..   ..+++++..... ....++++++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~~~~v~e~   80 (256)
T cd08530           5 LKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNH---PNIISYKEAFLD-GNKLCIVMEY   80 (256)
T ss_pred             eeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCC---CCchhhhhhhcc-CCEEEEEehh
Confidence            456777877889998763 3 37888876531     11234456666666642   245555544332 4688999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      .+|.++
T Consensus        81 ~~~~~L   86 (256)
T cd08530          81 APFGDL   86 (256)
T ss_pred             cCCCCH
Confidence            988744

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=97.30  E-value=0.0011  Score=57.49  Aligned_cols=75  Identities=16%  Similarity=0.027  Sum_probs=49.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++.++.|..+.+|++... ++ .|++|+....    ....+..|.++++.+..   -.+++++..... .+..++++||+
T Consensus        10 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   85 (284)
T cd06620          10 ISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRS---PYIVSFYGAFLN-ENNICMCMEFM   85 (284)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCC---CCcceEeeeEec-CCEEEEEEecC
Confidence            456788888999998864 33 6777765432    12446678887777742   234555544332 46889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        86 ~~~~L   90 (284)
T cd06620          86 DCGSL   90 (284)
T ss_pred             CCCCH
Confidence            98744

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=97.29  E-value=0.0027  Score=54.85  Aligned_cols=73  Identities=18%  Similarity=0.161  Sum_probs=47.9

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.+++.|..+.+|++...  +..+++|.....     ....+..|++.++.+..   ..+.+++..... .+..+++||
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v~e   79 (284)
T cd07860           4 KVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH---PNIVKLLDVIHT-ENKLYLVFE   79 (284)
T ss_pred             eeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCC---CCCcchhhhccc-CCcEEEEee
Confidence            3567888888899998763  337888876531     12346778888888853   234444443322 467899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      ++.+
T Consensus        80 ~~~~   83 (284)
T cd07860          80 FLHQ   83 (284)
T ss_pred             cccc
Confidence            9864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=97.29  E-value=0.0035  Score=53.83  Aligned_cols=73  Identities=11%  Similarity=0.067  Sum_probs=42.6

Q ss_pred             eeCCccccceEEEEeCCc----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTDAG----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~g----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .++.|..+.+|+....++    ..++|......    ...+..|...++.+..   -.+++.+..... ....+++|||+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~   77 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQH---PNILQCLGQCVE-AIPYLLVFEYC   77 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCC---cchhheEEEecC-CCccEEEEecC
Confidence            467787888998754222    45667654321    2335556655555532   234445544332 45779999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus        78 ~~~~L   82 (268)
T cd05086          78 ELGDL   82 (268)
T ss_pred             CCCcH
Confidence            88643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=97.28  E-value=0.0022  Score=55.31  Aligned_cols=72  Identities=15%  Similarity=0.070  Sum_probs=44.2

Q ss_pred             eeeCCccccceEEEEeCC--ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           28 CPVGGGCINLASRYGTDA--GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +.++.|..+.+|+....+  ..+++|......    ......|...+..+.++  ..+++++..... .+..+++||++.
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h--~~i~~~~~~~~~-~~~~~lv~e~~~   81 (283)
T cd07830           5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEH--PNIVKLKEVFRE-NDELYFVFEYME   81 (283)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCC--CCchhHHHHhhc-CCcEEEEEecCC
Confidence            457778778999988743  368888765321    12233566666666433  234445544332 568899999994


Q ss_pred             C
Q 022304          102 F  102 (299)
Q Consensus       102 G  102 (299)
                      |
T Consensus        82 ~   82 (283)
T cd07830          82 G   82 (283)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=97.27  E-value=0.00087  Score=63.56  Aligned_cols=80  Identities=19%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             ceeeeeeeCCccccceEEEE-eCCc-cEEEEecCC----CCcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CC
Q 022304           23 HITKICPVGGGCINLASRYG-TDAG-SFFVKTNRS----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~-~~~g-~~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~   91 (299)
                      ..-.-+.+|.|..+.||+-. +..| .+.+|..+.    ..++..-+|+++++.|. +  -.+.+.++..++.     ..
T Consensus        14 ~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLn-h--~NIVk~f~iee~~~~~~~~~   90 (732)
T KOG4250|consen   14 LWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLN-H--PNIVKLFDIEETKFLGLVTR   90 (732)
T ss_pred             ceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcC-c--hhhhhhcccCCccccCcccc
Confidence            44455778889899999987 4555 677787764    23455678999999987 3  1222233322221     23


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      .+.++|||+.|+.+
T Consensus        91 ~~vlvmEyC~gGsL  104 (732)
T KOG4250|consen   91 LPVLVMEYCSGGSL  104 (732)
T ss_pred             cceEEEeecCCCcH
Confidence            67999999999854

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=97.26  E-value=0.0048  Score=53.20  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      +..-.+.++.|..+.+|+.... .|     .+.+|......    ...+..|+..+..+..   ..+.+++....  .+.
T Consensus         8 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~--~~~   82 (279)
T cd05057           8 ELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDH---PHVVRLLGICL--SSQ   82 (279)
T ss_pred             HcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCC---CCcceEEEEEe--cCc
Confidence            3444578888888999998752 22     47788765432    1345567777776632   23455555443  267


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .++++++.+|..+
T Consensus        83 ~~~v~e~~~~g~L   95 (279)
T cd05057          83 VQLITQLMPLGCL   95 (279)
T ss_pred             eEEEEecCCCCcH
Confidence            8999999988644

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.0018  Score=59.23  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=81.6

Q ss_pred             eeeeeeCCccccceEEEEe-CCc-cEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGT-DAG-SFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ..++.||.|..+.||+... ..| -|.+|--+-     ...-...+|+.+|+.|.....+..-.++-.. . .+..|+|+
T Consensus       120 eki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~-~-~~siYlVF  197 (560)
T KOG0600|consen  120 EKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSK-L-SGSIYLVF  197 (560)
T ss_pred             HHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEec-C-CceEEEEE
Confidence            3578899999999999875 344 355665442     2234467899999999653222222222221 1 47899999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      ||.+-. +       .-.   ++. +.    ..               ...        .++..                
T Consensus       198 eYMdhD-L-------~GL---l~~-p~----vk---------------ft~--------~qIKc----------------  222 (560)
T KOG0600|consen  198 EYMDHD-L-------SGL---LSS-PG----VK---------------FTE--------PQIKC----------------  222 (560)
T ss_pred             ecccch-h-------hhh---hcC-CC----cc---------------cCh--------HHHHH----------------
Confidence            999753 1       111   111 10    00               000        11221                


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+.++++.+....     ...++|+|++..|||+|++|..-|=||.
T Consensus       223 ~mkQLl~Gl~~cH-----~~gvlHRDIK~SNiLidn~G~LKiaDFG  263 (560)
T KOG0600|consen  223 YMKQLLEGLEYCH-----SRGVLHRDIKGSNILIDNNGVLKIADFG  263 (560)
T ss_pred             HHHHHHHHHHHHh-----hcCeeeccccccceEEcCCCCEEecccc
Confidence            2234444444322     4689999999999999999988898874

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=97.25  E-value=0.0036  Score=53.59  Aligned_cols=76  Identities=17%  Similarity=0.009  Sum_probs=46.5

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCCC--------cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEE
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSIG--------PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~--------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~   95 (299)
                      .+.++.|..+.+|++...  +..+++|......        ...+..|+.+++.|...   .+.+.+...... ....++
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~i~~~~~~~~~~~~~~~~l   83 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHE---RIVQYYGCLRDRAEKTLTI   83 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCC---CeeeEEEEEEcCCCCEEEE
Confidence            356778888899998763  3378888764210        12356788777777531   233333322211 356789


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      ++++++|..+
T Consensus        84 ~~e~~~~~~L   93 (266)
T cd06651          84 FMEYMPGGSV   93 (266)
T ss_pred             EEeCCCCCcH
Confidence            9999988644

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=97.25  E-value=0.0024  Score=54.68  Aligned_cols=73  Identities=25%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             eeCCccccceEEEEeCC--------ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           29 PVGGGCINLASRYGTDA--------GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~--------g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .++.|..+.||+++..+        ..+.+|.....    ....+..|+..++.+..   ..+.+++..... .+..+++
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v   77 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNH---PNIVKLLGVCLL-NEPQYII   77 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCC---CCeeeEeeeecC-CCCeEEE
Confidence            35677778899877532        25777876432    12345567777766642   223344443322 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |++++|.++
T Consensus        78 ~e~~~~~~L   86 (269)
T cd05044          78 MELMEGGDL   86 (269)
T ss_pred             EeccCCCcH
Confidence            999998643

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=97.24  E-value=0.003  Score=54.75  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=46.4

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ..+.++.|..+.||++....  ..+.+|.....    ....+..|...+..+..+  -.+++++..... ++..+++|++
T Consensus         8 ~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~--~~iv~~~~~~~~-~~~~~~~~e~   84 (288)
T cd06616           8 DLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDC--PYIVKFYGALFR-EGDCWICMEL   84 (288)
T ss_pred             HHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCC--CCEeeeeeEEec-CCcEEEEEec
Confidence            34567788888999987642  37888876532    123355677666666433  235555554332 5678899999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      +.+
T Consensus        85 ~~~   87 (288)
T cd06616          85 MDI   87 (288)
T ss_pred             ccC
Confidence            765

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=97.24  E-value=0.0039  Score=62.83  Aligned_cols=77  Identities=18%  Similarity=0.060  Sum_probs=49.7

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~   97 (299)
                      -+..|+.|..+.||++.... + .+++|+....     ....+..|+.++..|..   ..+.+++...... ....|++|
T Consensus        17 Il~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~H---PNIVrl~d~f~de~~~~lyIVM   93 (1021)
T PTZ00266         17 VIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKH---KNIVRYIDRFLNKANQKLYILM   93 (1021)
T ss_pred             EEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCC---CCcCeEEEEEEecCCCEEEEEE
Confidence            35778888889999998643 3 5677765421     12446678888888753   2344444322111 35689999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus        94 EY~~gGSL  101 (1021)
T PTZ00266         94 EFCDAGDL  101 (1021)
T ss_pred             eCCCCCcH
Confidence            99998744

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=97.23  E-value=0.0029  Score=54.74  Aligned_cols=75  Identities=16%  Similarity=0.069  Sum_probs=47.8

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++.++.|..+.+|++...  +..+++|..... .   ...+..|...++.+..   -.+++.+..... .+..+++||++
T Consensus         6 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~lv~e~~   81 (286)
T cd06622           6 LDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVS---PYIVDFYGAFFI-EGAVYMCMEYM   81 (286)
T ss_pred             hhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCC---CcHHhhhhheec-CCeEEEEEeec
Confidence            356778888899998874  337888866431 1   1335567777766632   233444443322 56889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        82 ~~~~l   86 (286)
T cd06622          82 DAGSL   86 (286)
T ss_pred             CCCCH
Confidence            99744

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=97.21  E-value=0.0036  Score=53.44  Aligned_cols=74  Identities=12%  Similarity=0.087  Sum_probs=47.9

Q ss_pred             eeeCCccccceEEEEe--CCccEEEEecCCCC---------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           28 CPVGGGCINLASRYGT--DAGSFFVKTNRSIG---------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~--~~g~~vlK~~~~~~---------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      +.++.|..+.+|++..  ++..+++|......         ...+..|+..++.+...   .+++++..... .+..+++
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~~-~~~~~~v   81 (268)
T cd06630           6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHP---HIIRMLGATCE-DSHFNLF   81 (268)
T ss_pred             ceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCC---ceehhhceecc-CCeEEEE
Confidence            4577888889999875  23378888775311         13456788888777532   33444443322 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      +++.+|..+
T Consensus        82 ~e~~~~~~L   90 (268)
T cd06630          82 VEWMAGGSV   90 (268)
T ss_pred             EeccCCCcH
Confidence            999998744

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=97.20  E-value=0.003  Score=55.12  Aligned_cols=75  Identities=12%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             eeeeeeCCccccceEEEEeCC--ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           25 TKICPVGGGCINLASRYGTDA--GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .-.+.++.|..+.+|++...+  ..+++|......    ...+..|...+..+..+  -.+++.+..... ....+++|+
T Consensus        18 ~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~i~~~~~~~~~-~~~~~~v~e   94 (296)
T cd06618          18 ENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDC--PYIVKCYGYFIT-DSDVFICME   94 (296)
T ss_pred             eeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCC--CchHhhheeeec-CCeEEEEee
Confidence            345788888888999998763  378888875321    11223344444333322  234555544332 467899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      ++.+
T Consensus        95 ~~~~   98 (296)
T cd06618          95 LMST   98 (296)
T ss_pred             ccCc
Confidence            8754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=97.18  E-value=0.0042  Score=55.80  Aligned_cols=75  Identities=12%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCc
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGG   92 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~   92 (299)
                      ..++.++.|..+.||++...  +..+++|.....     ....+..|..+++.+..   ..+.+++......     ...
T Consensus        19 ~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~~   95 (353)
T cd07850          19 QNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNH---KNIIGLLNVFTPQKSLEEFQD   95 (353)
T ss_pred             EEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCC---CCCcceeeeeccCCCccccCc
Confidence            34678888888999998763  337899986531     11234567777776643   2233444321110     135


Q ss_pred             eEEEEecccC
Q 022304           93 SYIIMEFIEF  102 (299)
Q Consensus        93 ~~~v~e~l~G  102 (299)
                      .+++||+++|
T Consensus        96 ~~lv~e~~~~  105 (353)
T cd07850          96 VYLVMELMDA  105 (353)
T ss_pred             EEEEEeccCC
Confidence            6999999976

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=97.18  E-value=0.0045  Score=54.15  Aligned_cols=76  Identities=13%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ....++.|..+.+|++...  +..+++|.....   ....+..|...++.+..   -.+++++..... .+..++++|++
T Consensus        25 ~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h---p~i~~~~~~~~~-~~~~~iv~e~~  100 (297)
T cd06659          25 NYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH---QNVVEMYKSYLV-GEELWVLMEFL  100 (297)
T ss_pred             hhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCC---Cchhhhhhheee-CCeEEEEEecC
Confidence            3457888888899998763  337888886431   22345567766665532   234444443222 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       101 ~~~~L  105 (297)
T cd06659         101 QGGAL  105 (297)
T ss_pred             CCCCH
Confidence            88643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=97.17  E-value=0.0041  Score=53.42  Aligned_cols=131  Identities=19%  Similarity=0.210  Sum_probs=75.3

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccce---eecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPF---KVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~---~~~~~~~~~~~   94 (299)
                      .+..+|.|....|-.|+.. .| -|.+|+-....      -.....|..+|+.+.      .|-++   .+..+ .+.-|
T Consensus        48 ~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~------~PFlv~l~~t~~d-~~~ly  120 (355)
T KOG0616|consen   48 RLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVS------HPFLVKLYGTFKD-NSNLY  120 (355)
T ss_pred             heeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhcc------CceeEEEEEeecc-CCeEE
Confidence            3566788888888888764 33 56667765321      122234554544442      23333   22222 56889


Q ss_pred             EEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChH
Q 022304           95 IIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDST  174 (299)
Q Consensus        95 ~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (299)
                      |+|++++|+.       +=..|++.++.+.                        .-..||+.+                 
T Consensus       121 mvmeyv~GGE-------lFS~Lrk~~rF~e------------------------~~arFYAAe-----------------  152 (355)
T KOG0616|consen  121 MVMEYVPGGE-------LFSYLRKSGRFSE------------------------PHARFYAAE-----------------  152 (355)
T ss_pred             EEEeccCCcc-------HHHHHHhcCCCCc------------------------hhHHHHHHH-----------------
Confidence            9999999973       3333333322221                        112344321                 


Q ss_pred             HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          175 IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       175 ~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                             ++-.+. ++.    ...++.+|++|.|+|+|.+|-.-|+||.
T Consensus       153 -------ivlAle-ylH----~~~iiYRDLKPENiLlD~~G~iKitDFG  189 (355)
T KOG0616|consen  153 -------IVLALE-YLH----SLDIIYRDLKPENLLLDQNGHIKITDFG  189 (355)
T ss_pred             -------HHHHHH-HHH----hcCeeeccCChHHeeeccCCcEEEEecc
Confidence                   111112 222    3589999999999999999988999974

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=97.17  E-value=0.0067  Score=52.75  Aligned_cols=73  Identities=19%  Similarity=0.185  Sum_probs=49.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -...++.|..+.+|++... ++ .+++|.....     ....+..|+..++.+..   -.+++++..... ....+++||
T Consensus         6 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e   81 (294)
T PLN00009          6 KVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH---GNIVRLQDVVHS-EKRLYLVFE   81 (294)
T ss_pred             EEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccC---CCEeeEEEEEec-CCeEEEEEe
Confidence            3467788888899998764 33 7899977531     12346678888887743   245556655433 468899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      |+++
T Consensus        82 ~~~~   85 (294)
T PLN00009         82 YLDL   85 (294)
T ss_pred             cccc
Confidence            9864

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=97.16  E-value=0.0071  Score=51.78  Aligned_cols=73  Identities=15%  Similarity=0.074  Sum_probs=42.6

Q ss_pred             eeCCccccceEEEEeCC-------------c-cEEEEecCCCCc---chHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           29 PVGGGCINLASRYGTDA-------------G-SFFVKTNRSIGP---SMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~~-------------g-~~vlK~~~~~~~---~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      .+|.|..+.+|+.+...             . .+++|.......   ..+..|...+..+..   -.+++++..... ..
T Consensus         2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~h---p~iv~~~~~~~~-~~   77 (262)
T cd05077           2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSH---KHIVLLYGVCVR-DV   77 (262)
T ss_pred             ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCC---CCEeeEEEEEec-CC
Confidence            56777778888876321             1 467787654222   234445555554432   234555544332 45


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++||++++..+
T Consensus        78 ~~~lv~e~~~~~~l   91 (262)
T cd05077          78 ENIMVEEFVEFGPL   91 (262)
T ss_pred             CCEEEEecccCCCH
Confidence            78999999998743

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=97.16  E-value=0.0029  Score=54.16  Aligned_cols=76  Identities=18%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC--------CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEE
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI--------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~--------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~   95 (299)
                      .+.++.|..+.+|+..... + .+.+|.....        ....+..|+.+++.+...   .+.+++...... .+..++
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~---~i~~~~~~~~~~~~~~~~~   83 (264)
T cd06653           7 GKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHD---RIVQYYGCLRDPEEKKLSI   83 (264)
T ss_pred             eeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCC---CcceEEEEEEcCCCCEEEE
Confidence            3567778788999987532 3 7888875321        113456788888877532   234445432221 346789


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      ++|+.+|..+
T Consensus        84 v~e~~~~~~L   93 (264)
T cd06653          84 FVEYMPGGSI   93 (264)
T ss_pred             EEEeCCCCcH
Confidence            9999988643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=97.16  E-value=0.011  Score=50.63  Aligned_cols=74  Identities=14%  Similarity=-0.004  Sum_probs=48.2

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ..++.|..+.+|+.... ++ .+.+|......   ...+..|+..++.+..   ..+.+++..... .+..++++|+++|
T Consensus        14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~~~   89 (268)
T cd06624          14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKH---RNIVQYLGSDSE-NGFFKIFMEQVPG   89 (268)
T ss_pred             EEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCC---CCeeeeeeeecc-CCEEEEEEecCCC
Confidence            46777878899999754 33 68888765321   2346678777776643   233445544332 4678999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        90 ~~L   92 (268)
T cd06624          90 GSL   92 (268)
T ss_pred             CCH
Confidence            744

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=97.15  E-value=0.0029  Score=56.37  Aligned_cols=73  Identities=12%  Similarity=0.050  Sum_probs=44.6

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceee---cccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKV---GALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~---~~~~~~~~~~v   96 (299)
                      .+.++.|..+.+|++...  +..|++|.....     ....+..|...++.+...   .+++++..   ........+++
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~~~~~~~~~~~lv   86 (334)
T cd07855          10 IENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHD---NIIAIRDILRPPGADFKDVYVV   86 (334)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCC---CccCHHHhccccCCCCceEEEE
Confidence            456787877889998764  338888876531     123355688888877632   23333322   11113467999


Q ss_pred             EecccC
Q 022304           97 MEFIEF  102 (299)
Q Consensus        97 ~e~l~G  102 (299)
                      ++|+.|
T Consensus        87 ~e~~~~   92 (334)
T cd07855          87 MDLMES   92 (334)
T ss_pred             Eehhhh
Confidence            999865

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=97.15  E-value=0.0068  Score=53.18  Aligned_cols=73  Identities=11%  Similarity=0.038  Sum_probs=47.2

Q ss_pred             eeeeCCccccceEEEEeCC----ccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEE
Q 022304           27 ICPVGGGCINLASRYGTDA----GSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~----g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~   95 (299)
                      +..++.|..+.+|++....    ..|++|.....      ....+..|+.++..+..   ..+.+++...... ....++
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           5 EGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH---ENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             EEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCC---CCccceEEEEeCCCCceEEE
Confidence            3458888888999998743    37999987641      12345678877777753   2334444433221 257899


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +||++++
T Consensus        82 v~e~~~~   88 (316)
T cd07842          82 LFDYAEH   88 (316)
T ss_pred             EEeCCCc
Confidence            9999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=97.15  E-value=0.0062  Score=53.21  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=85.3

Q ss_pred             eeeeCCccccceEEEEeCCc--cEEEEecC-C----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDAG--SFFVKTNR-S----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g--~~vlK~~~-~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +.+|+.|.+.-|||......  -+.+|.-. .    ..+-.--+|+.+|........+.|=+++--..  -+..|+||+|
T Consensus        81 lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~--~d~iy~VMe~  158 (419)
T KOG0663|consen   81 LNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSN--MDKIYIVMEY  158 (419)
T ss_pred             HhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccc--cceeeeeHHH
Confidence            56788999999999986432  34555443 2    12222357888776665322223333332221  3578999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          100 IEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       100 l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                      ++-.        +...   ||..+.+   |..                 .        ..                .-..
T Consensus       159 ~EhD--------Lksl---~d~m~q~---F~~-----------------~--------ev----------------K~L~  183 (419)
T KOG0663|consen  159 VEHD--------LKSL---METMKQP---FLP-----------------G--------EV----------------KTLM  183 (419)
T ss_pred             HHhh--------HHHH---HHhccCC---Cch-----------------H--------HH----------------HHHH
Confidence            9752        2222   3333321   210                 0        00                1122


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-c-ccCCchhhhh
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-C-YYGHNEAEFG  234 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~-~~g~~~~Dla  234 (299)
                      .+++..++.+.     ..-++|+||++.|+|..+.|..-|-||. + .||.|.--++
T Consensus       184 ~QlL~glk~lH-----~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T  235 (419)
T KOG0663|consen  184 LQLLRGLKHLH-----DNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYT  235 (419)
T ss_pred             HHHHHHHHHHh-----hceeEecccchhheeeccCCcEEecccchhhhhcCCcccCc
Confidence            33444444332     3579999999999999988888999985 5 5999944433

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.15  E-value=0.0042  Score=58.70  Aligned_cols=27  Identities=30%  Similarity=0.246  Sum_probs=24.2

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.|||++.++.+.|+|+.
T Consensus       162 ~~IiHrDLKP~NILl~~~~~vkL~DFG  188 (496)
T PTZ00283        162 KHMIHRDIKSANILLCSNGLVKLGDFG  188 (496)
T ss_pred             CCEecCCCCHHHEEEeCCCCEEEEecc
Confidence            479999999999999988888899974

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=97.14  E-value=0.0038  Score=54.20  Aligned_cols=76  Identities=16%  Similarity=0.093  Sum_probs=49.2

Q ss_pred             eeeeeCCccccceEEEEeCC------c-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           26 KICPVGGGCINLASRYGTDA------G-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~------g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      -...++.|..+.+|++...+      + .+.+|......   ...+..|.+.++.+..   -.+++++..... .+..++
T Consensus         9 ~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~l   84 (288)
T cd05093           9 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQH---EHIVKFYGVCVE-GDPLIM   84 (288)
T ss_pred             eccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCC---CCcceEEEEEec-CCccEE
Confidence            34567888888999987521      2 46778765422   2346678888877743   234555554433 467899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      ++|+.+|..+
T Consensus        85 v~e~~~~~~L   94 (288)
T cd05093          85 VFEYMKHGDL   94 (288)
T ss_pred             EEEcCCCCCH
Confidence            9999998744

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=97.14  E-value=0.011  Score=50.54  Aligned_cols=74  Identities=18%  Similarity=0.071  Sum_probs=46.9

Q ss_pred             eeeeCCccccceEEEEeCC-----ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTDA-----GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-----g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.++.|..+.+|+....+     ..+++|......    ...+..|...++.+..   ..+.+.+....  ....+++|
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h---~~i~~~~~~~~--~~~~~lv~   85 (270)
T cd05056          11 GRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDH---PHIVKLIGVIT--ENPVWIVM   85 (270)
T ss_pred             eeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCC---CchhceeEEEc--CCCcEEEE
Confidence            4677888888999976422     257888876432    2345667777777642   23444444332  35678999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |++++..+
T Consensus        86 e~~~~~~L   93 (270)
T cd05056          86 ELAPLGEL   93 (270)
T ss_pred             EcCCCCcH
Confidence            99987643

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=97.14  E-value=0.004  Score=55.68  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=48.7

Q ss_pred             eeeeCCccccceEEEEeC---C----ccEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTD---A----GSFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~---~----g~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.+|.|..+.||++...   +    ..+.+|+.... .   ...+..|...+..+..+  -.+.+++..........++
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h--~niv~~~~~~~~~~~~~~~   89 (337)
T cd05054          12 GKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHH--LNVVNLLGACTKPGGPLMV   89 (337)
T ss_pred             hcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccC--cchhheeeeEecCCCCEEE
Confidence            467788888899987531   1    26888987532 1   12345688888777443  2345555443322456789


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +++|++|.++
T Consensus        90 v~ey~~~~~L   99 (337)
T cd05054          90 IVEYCKFGNL   99 (337)
T ss_pred             EEecCCCCCH
Confidence            9999999755

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=97.13  E-value=0.0032  Score=55.79  Aligned_cols=73  Identities=15%  Similarity=0.191  Sum_probs=45.2

Q ss_pred             eeeeCCccccceEEEEeCC--ccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEE
Q 022304           27 ICPVGGGCINLASRYGTDA--GSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~   95 (299)
                      .+.++.|..+.+|++...+  ..+++|.....     ....+..|...++.+...   .+.+++......    ....++
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~i~~~~~~~~~~~~~~~~~~~l   81 (330)
T cd07834           5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHE---NIIGLLDILRPPSPEDFNDVYI   81 (330)
T ss_pred             eeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCc---chhhhhhhhcccCcccccceEE
Confidence            3567888888999998643  47888876532     123467788888877532   233333322110    136789


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +|+++++
T Consensus        82 v~e~~~~   88 (330)
T cd07834          82 VTELMET   88 (330)
T ss_pred             Eecchhh
Confidence            9998764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.12  E-value=0.016  Score=48.53  Aligned_cols=77  Identities=12%  Similarity=0.103  Sum_probs=57.5

Q ss_pred             CcceeeeeeeCCccccceEEEEe-CCc-cEEEEecCCCC-cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           21 ATHITKICPVGGGCINLASRYGT-DAG-SFFVKTNRSIG-PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        21 ~~~~~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~~-~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      +....=+.++|.|...+.|.-.. .+| ++.+|..++.. -..+-.|..+++.|+.  ++-.|.+..++.. .....+||
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~--g~GiP~i~~y~~e-~~ynvlVM   90 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQG--GVGIPHIRHYGTE-KDYNVLVM   90 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhcc--CCCCchhhhhccc-cccceeee
Confidence            33556688999998899998553 455 89999987632 3457789999999975  5778888877653 45778899


Q ss_pred             ecc
Q 022304           98 EFI  100 (299)
Q Consensus        98 e~l  100 (299)
                      +-+
T Consensus        91 dLL   93 (341)
T KOG1163|consen   91 DLL   93 (341)
T ss_pred             ecc
Confidence            866

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=97.12  E-value=0.0045  Score=54.93  Aligned_cols=67  Identities=10%  Similarity=0.037  Sum_probs=41.8

Q ss_pred             cccceEEEEeC--CccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCC
Q 022304           34 CINLASRYGTD--AGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        34 ~~n~~y~v~~~--~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      ..+.+|++...  +..+.+|+.....     ...+..|..+++.+..   -.+.+++..... .+..+++++++.|..
T Consensus        12 ~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h---~niv~~~~~~~~-~~~~~~v~e~~~~~~   85 (328)
T cd08226          12 NLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRH---PNIMTSWTVFTT-GSWLWVISPFMAYGS   85 (328)
T ss_pred             CceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CCcceEeeeEec-CCceEEEEecccCCC
Confidence            55679998763  3478889875321     1345667766665643   234445544332 467899999998863

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=97.12  E-value=0.0091  Score=51.06  Aligned_cols=75  Identities=16%  Similarity=0.041  Sum_probs=45.6

Q ss_pred             eeeCCccccceEEEEeCC-----ccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCc
Q 022304           28 CPVGGGCINLASRYGTDA-----GSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGG   92 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-----g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~   92 (299)
                      +.++.|..+.+|+.....     ..+.+|......     ...+..|...++.+..   ..+.+++......     ...
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~~   81 (273)
T cd05035           5 KILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH---PNVMKLIGVCFEASSLQKIPK   81 (273)
T ss_pred             cccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCC---CCeeeEEeeeccCCccccCcc
Confidence            456788888999987532     258888765321     1235567777666642   2344555433221     124


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++++|.++.++
T Consensus        82 ~~~v~e~~~~~~l   94 (273)
T cd05035          82 PMVILPFMKHGDL   94 (273)
T ss_pred             cEEEEeccCCCCH
Confidence            7899999988744

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=97.11  E-value=0.0035  Score=54.49  Aligned_cols=73  Identities=16%  Similarity=0.099  Sum_probs=44.9

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e   98 (299)
                      ...++.|..+.+|++.... + .+++|......     ...+..|...+..+. +  -.+++++...... .+..++++|
T Consensus        10 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~-h--~ni~~~~~~~~~~~~~~~~lv~e   86 (293)
T cd07843          10 LNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQ-H--PNIVTVKEVVVGSNLDKIYMVME   86 (293)
T ss_pred             hhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcC-C--CCEEEEEEEEEecCCCcEEEEeh
Confidence            3567778788999988753 3 67888765311     122456777777775 2  2344444332221 268899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      ++++
T Consensus        87 ~~~~   90 (293)
T cd07843          87 YVEH   90 (293)
T ss_pred             hcCc
Confidence            9975

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.11  E-value=0.0017  Score=60.05  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=59.8

Q ss_pred             CCcchHHHHHHhcC----CCcceeeeeeeCCccccceEEEEeC-Cc-cEEEEecC-C--CCcchHHHHHHHHHHHHhcCC
Q 022304            6 LSDDPIREWILSEG----KATHITKICPVGGGCINLASRYGTD-AG-SFFVKTNR-S--IGPSMFEGEALGLGAMYETRT   76 (299)
Q Consensus         6 ~~~~~i~~~l~~~~----~~~~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~-~--~~~~~~~~E~~~l~~L~~~~~   76 (299)
                      |+.+++..-|+...    +-......+++|.|.+..||...-. .+ .+.+|... .  ..+..+-.|..+++-+..   
T Consensus       253 ~~~~~~~~~l~~v~~~~dP~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H---  329 (550)
T KOG0578|consen  253 VSKEEILAKLKRVVSQGDPRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHH---  329 (550)
T ss_pred             chHHHHHHHhheeccCCChhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccc---
Confidence            34457777777662    2223456789999999999886643 22 45555443 1  234667788888876643   


Q ss_pred             CCCccceeecc-cC-CCceEEEEecccCCCCC
Q 022304           77 IRAPRPFKVGA-LP-TGGSYIIMEFIEFGSSR  106 (299)
Q Consensus        77 ~~vP~~~~~~~-~~-~~~~~~v~e~l~G~~~~  106 (299)
                         |.++-+-+ .. .+.-|.+|||++|..++
T Consensus       330 ---~NiVnfl~Sylv~deLWVVMEym~ggsLT  358 (550)
T KOG0578|consen  330 ---PNIVNFLDSYLVGDELWVVMEYMEGGSLT  358 (550)
T ss_pred             ---hHHHHHHHHhcccceeEEEEeecCCCchh
Confidence               44443321 11 35789999999998664

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=97.10  E-value=0.01  Score=51.09  Aligned_cols=78  Identities=22%  Similarity=0.100  Sum_probs=48.8

Q ss_pred             eeeeeeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           24 ITKICPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ..-...++.|..+.+|++...+       ..+.+|......    ...+..|..+++.+..   ..+.+++..... .+.
T Consensus         8 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~-~~~   83 (277)
T cd05036           8 ITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNH---QNIVRLIGVSFE-RLP   83 (277)
T ss_pred             cEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEcc-CCC
Confidence            3345678888888999987743       257778765321    1234556666666642   234445544332 457


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+.+|.++
T Consensus        84 ~~lv~e~~~g~~L   96 (277)
T cd05036          84 RFILLELMAGGDL   96 (277)
T ss_pred             cEEEEecCCCCCH
Confidence            7999999998744

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=97.10  E-value=0.011  Score=50.73  Aligned_cols=75  Identities=21%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             eeeeCCccccceEEEEeC----Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD----AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.++.|....||+....    .+ .+.+|......    ...+..|...+..+. +  -.+++++..... .+..+++|
T Consensus        10 ~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h--~~iv~~~~~~~~-~~~~~lv~   85 (266)
T cd05064          10 ERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFD-H--SNIVRLEGVITR-GNTMMIVT   85 (266)
T ss_pred             eeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCC-C--CCcCeEEEEEec-CCCcEEEE
Confidence            356788888899987542    12 56778765421    123456776666553 2  235555554332 56789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        86 e~~~~~~L   93 (266)
T cd05064          86 EYMSNGAL   93 (266)
T ss_pred             EeCCCCcH
Confidence            99999744

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=97.09  E-value=0.0037  Score=54.56  Aligned_cols=76  Identities=13%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ....++.|..+.+|++...  +..+++|.....   ....+..|...++.+..   ..+.+++..... .+..+++||++
T Consensus        26 ~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h---~~ii~~~~~~~~-~~~~~lv~e~~  101 (292)
T cd06658          26 SFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHH---ENVVDMYNSYLV-GDELWVVMEFL  101 (292)
T ss_pred             hhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCC---CcHHHHHHheec-CCeEEEEEeCC
Confidence            3567888888899998763  337888876432   12345567776666642   123333332221 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       102 ~~~~L  106 (292)
T cd06658         102 EGGAL  106 (292)
T ss_pred             CCCcH
Confidence            98643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.07  E-value=0.00067  Score=63.27  Aligned_cols=160  Identities=18%  Similarity=0.181  Sum_probs=94.1

Q ss_pred             cchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCc--cEEE-EecCCC--C--c-chHHHHHHHHHHHHhcCCCCC
Q 022304            8 DDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAG--SFFV-KTNRSI--G--P-SMFEGEALGLGAMYETRTIRA   79 (299)
Q Consensus         8 ~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g--~~vl-K~~~~~--~--~-~~~~~E~~~l~~L~~~~~~~v   79 (299)
                      .-+|+++.....+.--...+..||.|....||..+....  .+.+ |++.+.  .  . ..+-.|+.+|+.|..      
T Consensus        12 DPeiA~LF~k~DPEklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~H------   85 (948)
T KOG0577|consen   12 DPEIADLFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRH------   85 (948)
T ss_pred             CchHHHHHccCCHHHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccC------
Confidence            345666665554444456688999999999999887544  3333 454432  1  1 336678888877753      


Q ss_pred             ccceeec--ccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHh
Q 022304           80 PRPFKVG--ALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEH  157 (299)
Q Consensus        80 P~~~~~~--~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (299)
                      |..+.+.  -..+...|+||||+-|...     .    |-..|+-+..                      .        .
T Consensus        86 PntieYkgCyLre~TaWLVMEYClGSAs-----D----lleVhkKplq----------------------E--------v  126 (948)
T KOG0577|consen   86 PNTIEYKGCYLREHTAWLVMEYCLGSAS-----D----LLEVHKKPLQ----------------------E--------V  126 (948)
T ss_pred             CCcccccceeeccchHHHHHHHHhccHH-----H----HHHHHhccch----------------------H--------H
Confidence            6666442  1224578999999988521     2    2334553320                      0        0


Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhh
Q 022304          158 RLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEF  233 (299)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dl  233 (299)
                      .+.                +.....+..+. ++.    ....||.|++.||||+++.|.+.+-||. +.+..|+--+
T Consensus       127 EIA----------------Ai~~gaL~gLa-YLH----S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsF  182 (948)
T KOG0577|consen  127 EIA----------------AITHGALQGLA-YLH----SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSF  182 (948)
T ss_pred             HHH----------------HHHHHHHHHHH-HHH----HhhHHhhhccccceEecCCCeeeeccccchhhcCchhcc
Confidence            011                11122233333 222    3578999999999999988877777764 4455555444

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=97.07  E-value=0.0058  Score=54.57  Aligned_cols=27  Identities=30%  Similarity=0.424  Sum_probs=24.1

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.||++++++.+.|+|+.
T Consensus       137 ~~ivHrdikp~Nil~~~~~~~kl~Dfg  163 (343)
T cd07878         137 AGIIHRDLKPSNVAVNEDCELRILDFG  163 (343)
T ss_pred             CCeecccCChhhEEECCCCCEEEcCCc
Confidence            479999999999999988888899974

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=97.06  E-value=0.0097  Score=51.90  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .-++.++.|..+.+|++...  +..+++|.....   ....+..|...++.+..   -.+++++..... ....++++||
T Consensus        22 ~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h---p~i~~~~~~~~~-~~~~~lv~e~   97 (293)
T cd06647          22 TRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKH---PNIVNYLDSYLV-GDELWVVMEY   97 (293)
T ss_pred             eeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCC---CCeeehhheeee-CCcEEEEEec
Confidence            34577888888899998753  347888886532   12335566666665532   123333332221 4578999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        98 ~~~~~L  103 (293)
T cd06647          98 LAGGSL  103 (293)
T ss_pred             CCCCcH
Confidence            998743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=97.04  E-value=0.0063  Score=52.14  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             eeeCCccccceEEEEeCCc----cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeeccc--C---CCce
Q 022304           28 CPVGGGCINLASRYGTDAG----SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P---TGGS   93 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g----~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~---~~~~   93 (299)
                      +.++.|..+.||+....+.    .+.+|.....     ....+..|..+++.+..   -.+.+++.....  .   ....
T Consensus         5 ~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDH---PNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             cccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCC---CCcceEEEEEccCCcccCCCCc
Confidence            4567788889999876432    4777876432     12345667777777742   234555543211  0   1356


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++++|+++.++
T Consensus        82 ~~v~e~~~~~~l   93 (272)
T cd05075          82 VVILPFMKHGDL   93 (272)
T ss_pred             EEEEEeCCCCcH
Confidence            899999998644

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=97.03  E-value=0.008  Score=52.52  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeeccc-------CCC
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL-------PTG   91 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~-------~~~   91 (299)
                      -+..++.|..+.+|++...  +..+++|.....     .......|+..++.+...   .+.+++.....       ..+
T Consensus        16 ~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~~~~~~~~~~~~   92 (310)
T cd07865          16 KLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHE---NVVNLIEICRTKATPYNRYKG   92 (310)
T ss_pred             EEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCC---CccceEEEEecccccccCCCc
Confidence            3567888888899999864  237888876421     112345688888777542   12223322111       024


Q ss_pred             ceEEEEecccC
Q 022304           92 GSYIIMEFIEF  102 (299)
Q Consensus        92 ~~~~v~e~l~G  102 (299)
                      ..+++||+..+
T Consensus        93 ~~~lv~e~~~~  103 (310)
T cd07865          93 SFYLVFEFCEH  103 (310)
T ss_pred             eEEEEEcCCCc
Confidence            56999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=97.03  E-value=0.0078  Score=51.43  Aligned_cols=75  Identities=16%  Similarity=0.043  Sum_probs=46.1

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      .+.++.|..+.+|++...  +..+++|......   ...+..|...++.+..   -.+.+.+..... .+..++++|+++
T Consensus        14 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h---~~ii~~~~~~~~-~~~~~lv~e~~~   89 (267)
T cd06645          14 IQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKH---SNIVAYFGSYLR-RDKLWICMEFCG   89 (267)
T ss_pred             HHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCC---CCeeeEEEEEEe-CCEEEEEEeccC
Confidence            356777888899998753  2378888765321   1234567766666632   123333333222 468899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus        90 ~~~L   93 (267)
T cd06645          90 GGSL   93 (267)
T ss_pred             CCcH
Confidence            8744

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=97.03  E-value=0.0053  Score=53.06  Aligned_cols=78  Identities=17%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             eeeeeeeCCccccceEEEEeC------Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           24 ITKICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      +.-.+.++.|..+.+|++...      ++ .+.+|......   ...+..|..+++.+..   ..+.+++..... .+..
T Consensus         7 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~   82 (280)
T cd05092           7 IVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQH---QHIVRFYGVCTE-GRPL   82 (280)
T ss_pred             ceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCC---CCCceEEEEEec-CCce
Confidence            445677888888899998632      12 56667655321   2456778888877743   234555554433 4678


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      ++++|+++|..+
T Consensus        83 ~lv~e~~~~~~L   94 (280)
T cd05092          83 LMVFEYMRHGDL   94 (280)
T ss_pred             EEEEecCCCCCH
Confidence            999999998754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=97.02  E-value=0.015  Score=50.26  Aligned_cols=27  Identities=22%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.||++++++.+.++|+.
T Consensus       128 ~~iiH~dlkp~nili~~~~~~kl~Dfg  154 (279)
T cd05111         128 HRMVHRNLAARNILLKSDSIVQIADFG  154 (279)
T ss_pred             CCEeccccCcceEEEcCCCcEEEcCCc
Confidence            459999999999999888778899974

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=97.01  E-value=0.0074  Score=52.07  Aligned_cols=55  Identities=16%  Similarity=0.109  Sum_probs=31.5

Q ss_pred             cEEEEecCCCCc---chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           47 SFFVKTNRSIGP---SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        47 ~~vlK~~~~~~~---~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      ++++|+......   ..+..|+.+++.+..   ..+++++..... .+..+++|||++|..+
T Consensus        46 ~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h---~niv~~~~~~~~-~~~~~lv~ey~~~g~L  103 (274)
T cd05076          46 RVVLKVLDPSHRDIALAFFETASLMSQVSH---IHLAFVHGVCVR-GSENIMVEEFVEHGPL  103 (274)
T ss_pred             eEEEEecChHHHHHHHHHHHHHHHHhcCCC---CCeeeEEEEEEe-CCceEEEEecCCCCcH
Confidence            467777653211   123345555544432   345566655433 4678999999999743

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=97.00  E-value=0.0095  Score=53.05  Aligned_cols=74  Identities=12%  Similarity=0.068  Sum_probs=44.0

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeeccc---C-CCceEE
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGAL---P-TGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~---~-~~~~~~   95 (299)
                      -.+.++.|..+.+|++...  +..+++|......    ...+..|..+++.+...   .+.+++.....   . ....++
T Consensus         9 i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~l   85 (336)
T cd07849           9 NLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHE---NIIGILDIIRPPSFESFNDVYI   85 (336)
T ss_pred             EEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCC---CcCchhheeecccccccceEEE
Confidence            3567888888899998653  3378899765311    12345677777777532   22333322111   0 235689


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +++++++
T Consensus        86 v~e~~~~   92 (336)
T cd07849          86 VQELMET   92 (336)
T ss_pred             Eehhccc
Confidence            9998865

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=97.00  E-value=0.012  Score=49.82  Aligned_cols=72  Identities=22%  Similarity=0.194  Sum_probs=46.2

Q ss_pred             eeCCccccceEEEEeC--Cc---cEEEEecCCCCc----chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           29 PVGGGCINLASRYGTD--AG---SFFVKTNRSIGP----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~--~g---~~vlK~~~~~~~----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .++.|..+.+|++...  ++   .+++|..+....    ..+..|...++.+...   .+.+++....  ....++++|+
T Consensus         2 ~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~--~~~~~~v~e~   76 (257)
T cd05040           2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHE---NLIRLYGVVL--THPLMMVTEL   76 (257)
T ss_pred             cCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCC---CccceeEEEc--CCeEEEEEEe
Confidence            4677888899998753  23   478898875322    3456677777777531   2344444332  2577999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      .+|.++
T Consensus        77 ~~~~~L   82 (257)
T cd05040          77 APLGSL   82 (257)
T ss_pred             cCCCcH
Confidence            988744

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=96.96  E-value=0.0041  Score=53.76  Aligned_cols=74  Identities=11%  Similarity=0.024  Sum_probs=44.9

Q ss_pred             eeeeCCccccceEEEEeCC-------ccEEEEecCCCCc----chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTDA-------GSFFVKTNRSIGP----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~~----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ++.+|.|..+.||+....+       ..+.+|.......    ..+..|..++..+..   -.+.+++..... .+..++
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h---~~iv~~~~~~~~-~~~~~~   85 (283)
T cd05091          10 MEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQH---PNIVCLLGVVTK-EQPLSM   85 (283)
T ss_pred             HHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCC---CCcCeEEEEEcC-CCceEE
Confidence            3456777778899876421       2688888764321    335566666655532   234445544332 456789


Q ss_pred             EEecccCCC
Q 022304           96 IMEFIEFGS  104 (299)
Q Consensus        96 v~e~l~G~~  104 (299)
                      ++++.++..
T Consensus        86 ~~e~~~~~~   94 (283)
T cd05091          86 IFSYCSHSD   94 (283)
T ss_pred             EEEcCCCCc
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=96.96  E-value=0.0077  Score=51.78  Aligned_cols=71  Identities=15%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             eeeCCccccceEEEEeCC--ccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTDA--GSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..++.|..+.+|+....+  ..|++|......     ...+..|+.+++.+..   -.+++++..... .+..++++++.
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~~v~e~~   80 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKH---PNIVKLLDVIHT-ERKLYLVFEYC   80 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCC---CCHHHHHhhhhc-CCceEEEecCc
Confidence            456777778999988753  488889876421     1334567777776642   223444433322 46889999998


Q ss_pred             cC
Q 022304          101 EF  102 (299)
Q Consensus       101 ~G  102 (299)
                      ++
T Consensus        81 ~~   82 (282)
T cd07829          81 DM   82 (282)
T ss_pred             Cc
Confidence            75

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=96.95  E-value=0.012  Score=52.70  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=45.5

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCC--Cce
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT--GGS   93 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~--~~~   93 (299)
                      .-..+..+|.|..+.||++... ++ .+++|.....  .   ...+..|...++.+....-+....++..+....  ...
T Consensus        16 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   95 (343)
T cd07880          16 RYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDF   95 (343)
T ss_pred             ceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceE
Confidence            3445678898988999998753 34 7888976431  1   123567888888885421112222222211101  245


Q ss_pred             EEEEecc
Q 022304           94 YIIMEFI  100 (299)
Q Consensus        94 ~~v~e~l  100 (299)
                      +++|+++
T Consensus        96 ~lv~e~~  102 (343)
T cd07880          96 YLVMPFM  102 (343)
T ss_pred             EEEEecC
Confidence            8999988

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=96.93  E-value=0.0084  Score=52.41  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=44.8

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeeccc------C-CC
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL------P-TG   91 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~------~-~~   91 (299)
                      -.+.++.|..+.+|++...  +..+++|.....     ......+|...++.+...   .+.+++.....      . ..
T Consensus        12 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~i~~~~~~~~~~~~~~~~~~~   88 (311)
T cd07866          12 ILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHP---NVVPLIDMAVERPDKSKRKRG   88 (311)
T ss_pred             EEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCC---CccchhhheecccccccccCc
Confidence            3466888888899998763  337888876421     122356788888888542   22333322111      0 23


Q ss_pred             ceEEEEecccC
Q 022304           92 GSYIIMEFIEF  102 (299)
Q Consensus        92 ~~~~v~e~l~G  102 (299)
                      ..+++++|.++
T Consensus        89 ~~~lv~~~~~~   99 (311)
T cd07866          89 SVYMVTPYMDH   99 (311)
T ss_pred             eEEEEEecCCc
Confidence            46889998765

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=96.93  E-value=0.0077  Score=52.91  Aligned_cols=27  Identities=15%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|+||+++.++...+.|+.
T Consensus       120 ~~ivH~dlk~~Nili~~~~~~kl~d~~  146 (314)
T cd08216         120 KGFIHRSVKASHILLSGDGKVVLSGLR  146 (314)
T ss_pred             CCeecCCCCcceEEEecCCceEEecCc
Confidence            469999999999999887777788863

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=96.92  E-value=0.0034  Score=56.75  Aligned_cols=73  Identities=14%  Similarity=0.046  Sum_probs=40.6

Q ss_pred             eCCccccceEEE-EeCCccEE-EEecCC--CCc--------chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           30 VGGGCINLASRY-GTDAGSFF-VKTNRS--IGP--------SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        30 ~~~G~~n~~y~v-~~~~g~~v-lK~~~~--~~~--------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      +|.|..+.||+. ...+.+|| +||..-  .-+        ...-+|+++.+.|..   ..+.++|.+-..+.+..+.|+
T Consensus       471 LGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDH---pRIVKlYDyfslDtdsFCTVL  547 (775)
T KOG1151|consen  471 LGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDH---PRIVKLYDYFSLDTDSFCTVL  547 (775)
T ss_pred             hccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCc---ceeeeeeeeeeeccccceeee
Confidence            456667888884 44566765 588752  111        112345555554431   223333433222246789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|-++
T Consensus       548 EYceGNDL  555 (775)
T KOG1151|consen  548 EYCEGNDL  555 (775)
T ss_pred             eecCCCch
Confidence            99999755

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=96.92  E-value=0.0086  Score=50.42  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.||+++.++...++|+.
T Consensus       104 ~~i~H~dlkp~Nil~~~~~~~~l~df~  130 (237)
T cd05576         104 EGIVCRDLNPNNILLDDRGHIQLTYFS  130 (237)
T ss_pred             CCeeccCCCHHHEEEcCCCCEEEeccc
Confidence            479999999999999988878889964

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=96.91  E-value=0.019  Score=56.15  Aligned_cols=74  Identities=15%  Similarity=0.022  Sum_probs=52.8

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCC--CCcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRS--IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~--~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~v~e~   99 (299)
                      +-++.|....||++..- .+ -..+||-..  +....++.|+.++..+..+  --|++-|.+....    .+.-|+||||
T Consensus        25 evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~h--pnv~~fyg~~~k~~~~~~DqLWLVMEf  102 (953)
T KOG0587|consen   25 EVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHH--PNVATFYGAFIKKDPGNGDQLWLVMEF  102 (953)
T ss_pred             EEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCC--CCcceEEEEEEEecCCCCCeEEEEeec
Confidence            45566777788888753 33 567788765  3456789999999999876  3567666543221    4688999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      +.|+
T Consensus       103 C~gG  106 (953)
T KOG0587|consen  103 CGGG  106 (953)
T ss_pred             cCCc
Confidence            9997

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=96.91  E-value=0.0076  Score=52.95  Aligned_cols=76  Identities=9%  Similarity=-0.031  Sum_probs=45.9

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ...+..++.|..+.+|++... ++ .+++|.....   .   ...+..|...++.+...   .+.+++..... ....++
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~i~~~~~~~~~-~~~~~l   92 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHP---NTIQYRGCYLR-EHTAWL   92 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCC---CcccEEEEEEc-CCeeEE
Confidence            334567888888899998763 33 6778876421   1   12344677777777432   23333333222 467899


Q ss_pred             EEecccCC
Q 022304           96 IMEFIEFG  103 (299)
Q Consensus        96 v~e~l~G~  103 (299)
                      +++++.|.
T Consensus        93 v~e~~~~~  100 (308)
T cd06634          93 VMEYCLGS  100 (308)
T ss_pred             EEEccCCC
Confidence            99999763

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>PHA02988 hypothetical protein; Provisional

Probab=96.88  E-value=0.011  Score=51.37  Aligned_cols=75  Identities=11%  Similarity=0.007  Sum_probs=50.0

Q ss_pred             eeeCCccccceEEEEeCCccEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeeccc--C-CCceEEEEe
Q 022304           28 CPVGGGCINLASRYGTDAGSFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P-TGGSYIIME   98 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~-~~~~~~v~e   98 (299)
                      ..++.|....+|+...++..+++|......      ...+..|+..+..+..  + .+.+++.....  . ....+++||
T Consensus        26 ~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~-nIv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         26 VLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDS--N-NILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             eEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCC--C-CEEEEeeeEEecccCCCceEEEEE
Confidence            456667777899988876789999876421      1345688888888753  2 45555543221  1 246789999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus       103 y~~~g~L  109 (283)
T PHA02988        103 YCTRGYL  109 (283)
T ss_pred             eCCCCcH
Confidence            9999754

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=96.84  E-value=0.0091  Score=52.03  Aligned_cols=73  Identities=16%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC---------C
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP---------T   90 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---------~   90 (299)
                      ...++.|..+.+|++.... + .+++|.....     ....+..|...++.+...   .+.+++......         .
T Consensus        12 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~---~i~~~~~~~~~~~~~~~~~~~~   88 (302)
T cd07864          12 IGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHR---NIVNLKEIVTDKQDALDFKKDK   88 (302)
T ss_pred             eeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCC---CeeeeeheecCcchhhhccccC
Confidence            3567778788999988743 3 6777876531     123456688777777431   223333221110         2


Q ss_pred             CceEEEEecccC
Q 022304           91 GGSYIIMEFIEF  102 (299)
Q Consensus        91 ~~~~~v~e~l~G  102 (299)
                      +..++++++++|
T Consensus        89 ~~~~lv~e~~~~  100 (302)
T cd07864          89 GAFYLVFEYMDH  100 (302)
T ss_pred             CcEEEEEcccCc
Confidence            367899999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>PHA03210 serine/threonine kinase US3; Provisional

Probab=96.83  E-value=0.0045  Score=58.54  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=24.2

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|+|||++.++.+.|+||.
T Consensus       286 ~gIiHrDLKP~NILl~~~~~vkL~DFG  312 (501)
T PHA03210        286 KKLIHRDIKLENIFLNCDGKIVLGDFG  312 (501)
T ss_pred             CCeecCCCCHHHEEECCCCCEEEEeCC
Confidence            479999999999999988888899974

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=96.80  E-value=0.016  Score=50.76  Aligned_cols=76  Identities=16%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-----cEEEEecCCCCc----chHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-----SFFVKTNRSIGP----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-----~~vlK~~~~~~~----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      ...++.++.|..+.+|++... .+     .+++|.......    ..+..|..+++.+..   -.+.+++....  ....
T Consensus         9 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h---~niv~~~~~~~--~~~~   83 (303)
T cd05110           9 LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDH---PHLVRLLGVCL--SPTI   83 (303)
T ss_pred             ceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CCcccEEEEEc--CCCc
Confidence            445677888888999998752 23     367787654321    134566666666532   22344444332  2456


Q ss_pred             EEEEecccCCC
Q 022304           94 YIIMEFIEFGS  104 (299)
Q Consensus        94 ~~v~e~l~G~~  104 (299)
                      ++++++.+++.
T Consensus        84 ~~v~e~~~~g~   94 (303)
T cd05110          84 QLVTQLMPHGC   94 (303)
T ss_pred             eeeehhcCCCC
Confidence            78888888754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=96.80  E-value=0.019  Score=49.23  Aligned_cols=76  Identities=17%  Similarity=0.125  Sum_probs=46.3

Q ss_pred             eeeeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -...++.|..+.||+....+       ..+.+|......    ...+..|...+..+..   -.+.+++..... .+..+
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~---~~i~~~~~~~~~-~~~~~   85 (277)
T cd05032          10 LIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNC---HHVVRLLGVVST-GQPTL   85 (277)
T ss_pred             EEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCC---CceeEEEEEEcC-CCCcE
Confidence            34678888888999877532       368889876432    1224456655555432   123444444332 46789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+.++.++
T Consensus        86 ~v~e~~~~~~L   96 (277)
T cd05032          86 VVMELMAKGDL   96 (277)
T ss_pred             EEEecCCCCCH
Confidence            99999987643

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=96.80  E-value=0.016  Score=51.52  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -+..++.|..+.+|++... .+ .+++|.....     ....+..|.++++.+...   .+.+++..........+++++
T Consensus        14 ~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hp---niv~~~~~~~~~~~~~~lv~e   90 (328)
T cd07856          14 DLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHE---NIISLSDIFISPLEDIYFVTE   90 (328)
T ss_pred             EEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCC---CeeeEeeeEecCCCcEEEEee
Confidence            4567888888899998754 33 7888865321     123456788888777531   223333322211346789999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      +..+
T Consensus        91 ~~~~   94 (328)
T cd07856          91 LLGT   94 (328)
T ss_pred             hhcc
Confidence            8743

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=96.79  E-value=0.0045  Score=53.77  Aligned_cols=64  Identities=14%  Similarity=0.025  Sum_probs=43.7

Q ss_pred             cEEEEecCC---CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcC
Q 022304           47 SFFVKTNRS---IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAG  123 (299)
Q Consensus        47 ~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~  123 (299)
                      .|.|||-..   ..+.++-+|++.+.+-..+  ..+-+++.+-+. +...|+|+|.+.|+++          |.+||+..
T Consensus       105 EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh--~nilqLiefFEd-d~~FYLVfEKm~GGpl----------LshI~~~~  171 (463)
T KOG0607|consen  105 EYAVKIIDKQPGHSRSRVFREVETFYQCQGH--KNILQLIEFFED-DTRFYLVFEKMRGGPL----------LSHIQKRK  171 (463)
T ss_pred             hhhhhhhhcCCchHHHHHHHHHHHHHHhcCC--ccHHHHHHHhcc-cceEEEEEecccCchH----------HHHHHHhh
Confidence            788887653   3467778899877766554  345555544322 5689999999999754          66777655

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=96.78  E-value=0.013  Score=52.22  Aligned_cols=73  Identities=12%  Similarity=0.083  Sum_probs=44.1

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~   99 (299)
                      +.++.|..+.+|++...  +..+++|....     .....+..|...+..+..+  -.+.+++...... ....++++|+
T Consensus        13 ~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h--~ni~~~~~~~~~~~~~~~~lv~e~   90 (337)
T cd07852          13 QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDH--PNIVKLLNVIKAENDKDIYLVFEY   90 (337)
T ss_pred             HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCC--CCccceeeeeccCCCceEEEEecc
Confidence            45677777789998754  23788885532     1123356788888888443  2234444432221 2357999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      +++
T Consensus        91 ~~~   93 (337)
T cd07852          91 MET   93 (337)
T ss_pred             ccc
Confidence            975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.75  E-value=0.0009  Score=57.01  Aligned_cols=71  Identities=17%  Similarity=0.096  Sum_probs=45.9

Q ss_pred             eeeCCccccceEEEEe-CCc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecc--c-CCC-ceEEE
Q 022304           28 CPVGGGCINLASRYGT-DAG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGA--L-PTG-GSYII   96 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~--~-~~~-~~~~v   96 (299)
                      +.+|.|..+.+|++.. .+| .+.+|--.-+     .+..+..|..+|+.|..      |.++.+..  . .+. ..+++
T Consensus        25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~H------pNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNH------PNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCC------chHHHHHHHhhhccchhhHHH
Confidence            5678899999999987 345 4555533221     24556789988888853      55654322  1 123 37899


Q ss_pred             EecccCCC
Q 022304           97 MEFIEFGS  104 (299)
Q Consensus        97 ~e~l~G~~  104 (299)
                      ||+.++++
T Consensus        99 mE~c~~GD  106 (375)
T KOG0591|consen   99 MELCDAGD  106 (375)
T ss_pred             HHhhcccC
Confidence            99998873

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=96.74  E-value=0.014  Score=51.80  Aligned_cols=73  Identities=11%  Similarity=0.071  Sum_probs=44.1

Q ss_pred             eeeCCccccceEEEEeCC---c-cEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEE
Q 022304           28 CPVGGGCINLASRYGTDA---G-SFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYI   95 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~---g-~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~   95 (299)
                      +.++.|..+.+|++....   + .|++|.....  .   ...+..|...++.+.++  -.+++.+......   ....++
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~iv~~~~~~~~~~~~~~~~~~   83 (332)
T cd07857           6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGH--KNITCLYDMDIVFPGNFNELYL   83 (332)
T ss_pred             EEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCC--CChheeeeeeeeccccCCcEEE
Confidence            457778788999998642   3 6888876531  1   12345688888887654  2344555432110   234677


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      ++++..+
T Consensus        84 ~~e~~~~   90 (332)
T cd07857          84 YEELMEA   90 (332)
T ss_pred             EEecccC
Confidence            8887754

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=96.74  E-value=0.015  Score=49.76  Aligned_cols=75  Identities=17%  Similarity=0.148  Sum_probs=48.8

Q ss_pred             eeeeCCccccceEEEEeC------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTD------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ...+|.|..+.||+.+..      ...++||......    ...+..|...++.+ ++  -.+.+++..... .+..+++
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l-~h--~ni~~~~g~~~~-~~~~~lv   79 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKL-RH--PNIVKLYGFCIE-NEPLFLV   79 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTH-SB--TTBE-EEEEEES-SSSEEEE
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccc-cc--cccccccccccc-ccccccc
Confidence            467888988899998876      2278889885421    24566777777777 33  245666655442 4568999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      +|+.++.++
T Consensus        80 ~e~~~~g~L   88 (259)
T PF07714_consen   80 MEYCPGGSL   88 (259)
T ss_dssp             EE--TTEBH
T ss_pred             ccccccccc
Confidence            999987633

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=96.74  E-value=0.0096  Score=49.50  Aligned_cols=66  Identities=14%  Similarity=0.028  Sum_probs=43.5

Q ss_pred             cceEEEEeCC--ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           36 NLASRYGTDA--GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        36 n~~y~v~~~~--g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +.+|++...+  ..+++|+.....    ...+..|...++.+..   .-+++++..... ....+++++++++..+
T Consensus         3 g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~---~~i~~~~~~~~~-~~~~~l~~e~~~~~~L   74 (244)
T smart00220        3 GKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKH---PNIVRLYDVFED-EDKLYLVMEYCDGGDL   74 (244)
T ss_pred             eEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCC---CcHHHHHhheee-CCEEEEEEeCCCCCCH
Confidence            4678887754  478999987532    3456778887777732   234555544332 4678999999988633

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=96.73  E-value=0.015  Score=52.80  Aligned_cols=75  Identities=15%  Similarity=0.065  Sum_probs=51.0

Q ss_pred             eeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +.+|.|....||++.... | .|-+|+-...      ....+..|+.+|+.|..+  -.+-+++..-++ ....+++||.
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~h--pniv~l~~~~e~-~~~~~lvmEL  117 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGH--PNIVQLKDAFED-PDSVYLVMEL  117 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCC--CCEEEEEEEEEc-CCeEEEEEEe
Confidence            678999999999998754 4 6777766431      125688999999999754  122222222222 4578999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      +.|+.+
T Consensus       118 ~~GGeL  123 (382)
T KOG0032|consen  118 CEGGEL  123 (382)
T ss_pred             cCCchH
Confidence            998743

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=96.72  E-value=0.0085  Score=55.02  Aligned_cols=143  Identities=22%  Similarity=0.230  Sum_probs=89.5

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      +..+|.|....||.-.-+.. ++-+|.-...  ....+.+|+.++..|+.   -.+-++++.+.. ++..++||||++-+
T Consensus       211 ~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H---~~lV~l~gV~~~-~~piyIVtE~m~~G  286 (468)
T KOG0197|consen  211 IRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRH---EKLVKLYGVCTK-QEPIYIVTEYMPKG  286 (468)
T ss_pred             HHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcc---cCeEEEEEEEec-CCceEEEEEecccC
Confidence            56788999899998877655 6667655432  23556799999999975   345667777653 34689999999876


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHH
Q 022304          104 SSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLM  183 (299)
Q Consensus       104 ~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (299)
                      .       |-..|.. |.-..                       .+         ...             +.....++.
T Consensus       287 s-------Ll~yLr~-~~~~~-----------------------l~---------~~~-------------Ll~~a~qIa  313 (468)
T KOG0197|consen  287 S-------LLDYLRT-REGGL-----------------------LN---------LPQ-------------LLDFAAQIA  313 (468)
T ss_pred             c-------HHHHhhh-cCCCc-----------------------cc---------hHH-------------HHHHHHHHH
Confidence            3       3334443 11000                       00         000             112223333


Q ss_pred             HHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-c-ccCCchh
Q 022304          184 KNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-C-YYGHNEA  231 (299)
Q Consensus       184 ~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~-~~g~~~~  231 (299)
                      +.+. +|+    ...+||+||...||||+++....|=||. + ..++-+|
T Consensus       314 eGM~-YLe----s~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y  358 (468)
T KOG0197|consen  314 EGMA-YLE----SKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEY  358 (468)
T ss_pred             HHHH-HHH----hCCccchhhhhhheeeccCceEEEcccccccccCCCce
Confidence            4333 343    4689999999999999988767788874 4 3444444

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.71  E-value=0.0033  Score=50.30  Aligned_cols=72  Identities=19%  Similarity=0.118  Sum_probs=58.7

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      ...++-|+.+.||...-.++..++|+.+.+ .+..++.|+.+|+-++..  ...|++|.++..     ++.|+|++|.++
T Consensus        27 ~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~--~~~p~vy~yg~~-----~i~me~i~G~~L   99 (201)
T COG2112          27 EKELAKGTTSVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILAGE--GVTPEVYFYGED-----FIRMEYIDGRPL   99 (201)
T ss_pred             hhhhhcccccEEEEeeccCceEEEEEecCCcchhhHHHHHHHHHHhhhc--CCCceEEEechh-----hhhhhhhcCcch
Confidence            455778888899999888888999998764 456789999999999764  468999999754     777999999865

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=96.69  E-value=0.014  Score=52.10  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=44.1

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceE
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~   94 (299)
                      -...++.|..+.+|++...  +..+++|.....     ....+..|..+++.+...   .+.+++......    ....+
T Consensus         9 ~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---ni~~~~~~~~~~~~~~~~~~~   85 (337)
T cd07858           9 PIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHE---NVIAIKDIMPPPHREAFNDVY   85 (337)
T ss_pred             EEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCC---CccchHHheecccccccCcEE
Confidence            3557888888899998763  237888876431     122345677777777432   233333221110    13479


Q ss_pred             EEEecccC
Q 022304           95 IIMEFIEF  102 (299)
Q Consensus        95 ~v~e~l~G  102 (299)
                      ++++++.+
T Consensus        86 lv~e~~~~   93 (337)
T cd07858          86 IVYELMDT   93 (337)
T ss_pred             EEEeCCCC
Confidence            99999865

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=96.68  E-value=0.032  Score=47.44  Aligned_cols=27  Identities=22%  Similarity=0.139  Sum_probs=23.5

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.||++++++...++|+.
T Consensus       117 ~~i~H~dlk~~nili~~~~~~kl~dfg  143 (262)
T cd05058         117 KKFVHRDLAARNCMLDESFTVKVADFG  143 (262)
T ss_pred             CCccccccCcceEEEcCCCcEEECCcc
Confidence            479999999999999988777888964

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.64  E-value=0.026  Score=50.16  Aligned_cols=75  Identities=15%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             eeeeeCCccccceEEEEeCCc---cEEEEecCCC---CcchHHHHHHHHHHHHh-cCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDAG---SFFVKTNRSI---GPSMFEGEALGLGAMYE-TRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g---~~vlK~~~~~---~~~~~~~E~~~l~~L~~-~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -...+|.|..+.+|.+.....   .+++|.....   ....+..|..++..+.. .....+|+++..+....+..|+||+
T Consensus        22 i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~  101 (322)
T KOG1164|consen   22 LGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMS  101 (322)
T ss_pred             EeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEe
Confidence            346788898999999987543   5888887642   12268899999999985 2245789999888421567899988


Q ss_pred             cc
Q 022304           99 FI  100 (299)
Q Consensus        99 ~l  100 (299)
                      -+
T Consensus       102 l~  103 (322)
T KOG1164|consen  102 LL  103 (322)
T ss_pred             cc
Confidence            65

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=96.60  E-value=0.0091  Score=50.86  Aligned_cols=74  Identities=16%  Similarity=0.167  Sum_probs=44.0

Q ss_pred             eeeCCccccceEEEEeCC-c--------cEEEEecCCCCc---chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           28 CPVGGGCINLASRYGTDA-G--------SFFVKTNRSIGP---SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~-g--------~~vlK~~~~~~~---~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      +.+|.|..+.||++.... +        ++++|.......   ..+..|...++.+..   -.+.+++..... ....++
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h---~~iv~~~~~~~~-~~~~~l   76 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSH---KHLVLNYGVCVC-GDESIM   76 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCC---CChhheeeEEEe-CCCcEE
Confidence            357778788999987532 1        366676643221   234556666655532   234445544332 457899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|..+
T Consensus        77 v~e~~~~g~L   86 (258)
T cd05078          77 VQEYVKFGSL   86 (258)
T ss_pred             EEecCCCCcH
Confidence            9999998744

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=96.59  E-value=0.037  Score=47.63  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=47.2

Q ss_pred             eeeeCCccccceEEEEeCC------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTDA------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .+.++.|....||+....+      ..+++|......    ...+..|...++.|. +  ..+.+++..........+++
T Consensus        11 ~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~-h--~ni~~~~~~~~~~~~~~~~~   87 (280)
T cd05043          11 SDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLS-H--QNILPILHVCIEDGEPPFVL   87 (280)
T ss_pred             eeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCC-C--CCCCeEEEEEecCCCCCEEE
Confidence            3567788888999987643      367888765421    233556777777663 2  33455555433213577899


Q ss_pred             EecccCCC
Q 022304           97 MEFIEFGS  104 (299)
Q Consensus        97 ~e~l~G~~  104 (299)
                      +++.++..
T Consensus        88 ~~~~~~~~   95 (280)
T cd05043          88 YPYMNWGN   95 (280)
T ss_pred             EEcCCCCc
Confidence            99988763

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=96.52  E-value=0.021  Score=52.93  Aligned_cols=69  Identities=16%  Similarity=0.114  Sum_probs=47.4

Q ss_pred             eeeCCccccceEEEEe-CCc-cEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCcccee---ecccCCCceEEEE
Q 022304           28 CPVGGGCINLASRYGT-DAG-SFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFK---VGALPTGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~---~~~~~~~~~~~v~   97 (299)
                      +-+|.|+...||--.- ..| .+.+|+-.+     .....++.|+++|+.+..      |.++-   ..++ ..+.|.||
T Consensus       570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~H------PGiV~le~M~ET-~ervFVVM  642 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHH------PGIVNLECMFET-PERVFVVM  642 (888)
T ss_pred             hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCC------CCeeEEEEeecC-CceEEEEe
Confidence            4578888888887443 334 677776542     234678999999998864      33332   2223 57899999


Q ss_pred             ecccCC
Q 022304           98 EFIEFG  103 (299)
Q Consensus        98 e~l~G~  103 (299)
                      |.+.|.
T Consensus       643 EKl~GD  648 (888)
T KOG4236|consen  643 EKLHGD  648 (888)
T ss_pred             hhhcch
Confidence            999995

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.47  E-value=0.022  Score=58.29  Aligned_cols=73  Identities=19%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      ..++.|....||+.... ++ .+++|...... .....|++.++.+. |  --+.+++.+... .+..+++|||++|..+
T Consensus       696 ~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~l~~l~-H--pnIv~~~~~~~~-~~~~~lv~Ey~~~g~L  770 (968)
T PLN00113        696 NVISRGKKGASYKGKSIKNGMQFVVKEINDVN-SIPSSEIADMGKLQ-H--PNIVKLIGLCRS-EKGAYLIHEYIEGKNL  770 (968)
T ss_pred             cEEccCCCeeEEEEEECCCCcEEEEEEccCCc-cccHHHHHHHhhCC-C--CCcceEEEEEEc-CCCCEEEEeCCCCCcH
Confidence            45788888899999863 34 78888765321 22245666666553 2  245666665543 4678999999998744

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.47  E-value=0.014  Score=55.32  Aligned_cols=73  Identities=15%  Similarity=0.141  Sum_probs=46.8

Q ss_pred             eeCCccccceEEEEe--CCccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGT--DAGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~--~~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|.++.|=..+.  ++....+|+-+..      ....+++|+-+++.|..   -.|-++|..... ...-|+++||+
T Consensus        19 TLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~H---pnVl~LydVwe~-~~~lylvlEyv   94 (786)
T KOG0588|consen   19 TLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEH---PNVLRLYDVWEN-KQHLYLVLEYV   94 (786)
T ss_pred             cccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcC---CCeeeeeeeecc-CceEEEEEEec
Confidence            355565554333222  1236677877542      25678999999999964   255666655443 45789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|+.+
T Consensus        95 ~gGEL   99 (786)
T KOG0588|consen   95 PGGEL   99 (786)
T ss_pred             CCchh
Confidence            99743

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=96.44  E-value=0.016  Score=51.87  Aligned_cols=78  Identities=13%  Similarity=0.037  Sum_probs=49.3

Q ss_pred             ceeeeeeeCCccccceEEEEeC----Cc-cEEEEe-cCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           23 HITKICPVGGGCINLASRYGTD----AG-SFFVKT-NRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~----~g-~~vlK~-~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ...-+.++|.|..+.||.-+.-    .+ .+-+|- .....+..+..|.+.|..+..+  --+-.+...-.- .+...++
T Consensus        37 ~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~--~ni~~~~~~~rn-nd~v~iv  113 (418)
T KOG1167|consen   37 AYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGS--DNIIKLNGCFRN-NDQVAIV  113 (418)
T ss_pred             hhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccc--hhhhcchhhhcc-CCeeEEE
Confidence            3445788999988888885542    22 444554 4445567789999988888653  223323322221 5788999


Q ss_pred             EecccCC
Q 022304           97 MEFIEFG  103 (299)
Q Consensus        97 ~e~l~G~  103 (299)
                      ++|++-.
T Consensus       114 lp~~~H~  120 (418)
T KOG1167|consen  114 LPYFEHD  120 (418)
T ss_pred             ecccCcc
Confidence            9998654

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.44  E-value=0.038  Score=50.17  Aligned_cols=70  Identities=11%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             eeeCCccccceEEEEe-CCc-cEEEEecC-C---CCcchHHHHHHHHHHHHhcCCCCCccceeecc-cC-CCceEEEEec
Q 022304           28 CPVGGGCINLASRYGT-DAG-SFFVKTNR-S---IGPSMFEGEALGLGAMYETRTIRAPRPFKVGA-LP-TGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~-~~g-~~vlK~~~-~---~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~-~~-~~~~~~v~e~   99 (299)
                      +.+|.|.+..||+... ..+ .+-+|+.. .   .....+++|...++.+..      |.++.+.. +. +..-|+||.+
T Consensus        32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~H------PNIv~~~~sFvv~~~LWvVmpf  105 (516)
T KOG0582|consen   32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDH------PNIVTYHCSFVVDSELWVVMPF  105 (516)
T ss_pred             EEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCC------CCcceEEEEEEecceeEEeehh
Confidence            6788898888999776 333 55667664 1   223567888887766642      66664322 11 4678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      +.|+
T Consensus       106 Ma~G  109 (516)
T KOG0582|consen  106 MAGG  109 (516)
T ss_pred             hcCC
Confidence            9987

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=96.44  E-value=0.052  Score=51.27  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=23.9

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.|||++.++...|+|+.
T Consensus       328 ~~ivHrDLKp~NILl~~~~~~kL~DFG  354 (507)
T PLN03224        328 IGIVHRDIKPENLLVTVDGQVKIIDFG  354 (507)
T ss_pred             CCeecCCCchHhEEECCCCcEEEEeCc
Confidence            469999999999999888878899974

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=96.41  E-value=0.029  Score=52.63  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=44.3

Q ss_pred             eeeCCccccceEEEEe--CCccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGT--DAGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~--~~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..++.|....|...+.  ..+.+.+|+.....     +..+.+|.+++..|..   -.+-+++..-.+ ....|+||||.
T Consensus        62 ~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~H---PnIvkl~~v~~t-~~~lylV~eya  137 (596)
T KOG0586|consen   62 KTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNH---PNIVKLFSVIET-EATLYLVMEYA  137 (596)
T ss_pred             eeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCC---cceeeeeeeeee-cceeEEEEEec
Confidence            3456665555555554  24488899886532     2335678888877753   123344444333 56789999999


Q ss_pred             cCC
Q 022304          101 EFG  103 (299)
Q Consensus       101 ~G~  103 (299)
                      .|+
T Consensus       138 ~~g  140 (596)
T KOG0586|consen  138 SGG  140 (596)
T ss_pred             cCc
Confidence            886

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=96.39  E-value=0.033  Score=47.28  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=29.7

Q ss_pred             CcceeccCCCCCCeeecCCCCeEEEccc-c-ccCCchhh
Q 022304          196 EPCLLHGDLWSGNISSDKNGEPVILDPA-C-YYGHNEAE  232 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~~~iID~~-~-~~g~~~~D  232 (299)
                      ..-++|+|++|+|+|++.+|+..|=||. + .+|.|-.-
T Consensus       119 ~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen  119 SKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             hhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcc
Confidence            3578999999999999999988999984 4 57755433

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=96.32  E-value=0.0092  Score=55.85  Aligned_cols=86  Identities=15%  Similarity=0.086  Sum_probs=61.1

Q ss_pred             HHhcCCCcceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccC
Q 022304           15 ILSEGKATHITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP   89 (299)
Q Consensus        15 l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~   89 (299)
                      |+++ +-...+=.+++|.|....+-.+++..+ .+.+|+-++.    .+..+.+|+.+|..|+.   -.+.+++..+.. 
T Consensus       532 l~Ef-PRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkh---PNIveLvGVC~~-  606 (807)
T KOG1094|consen  532 LVEF-PRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKH---PNIVELLGVCVQ-  606 (807)
T ss_pred             hhhc-chhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCC---CCeeEEEeeeec-
Confidence            3444 444555678999999999999998876 7778887753    34667889988888842   345666666543 


Q ss_pred             CCceEEEEecccCCCC
Q 022304           90 TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        90 ~~~~~~v~e~l~G~~~  105 (299)
                      +...++++||.+.+.+
T Consensus       607 DePicmI~EYmEnGDL  622 (807)
T KOG1094|consen  607 DDPLCMITEYMENGDL  622 (807)
T ss_pred             CCchHHHHHHHhcCcH
Confidence            4567899999987543

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=96.32  E-value=0.058  Score=48.16  Aligned_cols=75  Identities=15%  Similarity=0.059  Sum_probs=44.3

Q ss_pred             eeeeeeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CC
Q 022304           24 ITKICPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TG   91 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~   91 (299)
                      ......++.|..+.+|++...  +..+++|.....     ....+..|..+++.+...   .+.+++......     ..
T Consensus        17 y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          17 YTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHE---NVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             eEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCC---CccchhheecccccCCCCc
Confidence            334677888888899998753  337888876431     112356788888777532   233333322110     12


Q ss_pred             ceEEEEeccc
Q 022304           92 GSYIIMEFIE  101 (299)
Q Consensus        92 ~~~~v~e~l~  101 (299)
                      ..+++++++.
T Consensus        94 ~~~lv~e~~~  103 (342)
T cd07879          94 DFYLVMPYMQ  103 (342)
T ss_pred             eEEEEecccc
Confidence            4588888874

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=96.25  E-value=0.046  Score=48.83  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=48.1

Q ss_pred             CcceeeeeeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccC------
Q 022304           21 ATHITKICPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP------   89 (299)
Q Consensus        21 ~~~~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~------   89 (299)
                      +....-+++++.|..+.+|++...  +..+++|.....   ....+..|++.++.+..   ..+.+++......      
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h---~~i~~~~~~~~~~~~~~~~   80 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDH---DNIVKVYEVLGPSGSDLTE   80 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCC---CcchhhHhhhccccccccc
Confidence            345556788998888999998763  237888876432   22345678888877743   1233333221110      


Q ss_pred             -------CCceEEEEecccC
Q 022304           90 -------TGGSYIIMEFIEF  102 (299)
Q Consensus        90 -------~~~~~~v~e~l~G  102 (299)
                             ....++++||+++
T Consensus        81 ~~~~~~~~~~~~lv~e~~~~  100 (342)
T cd07854          81 DVGSLTELNSVYIVQEYMET  100 (342)
T ss_pred             ccccccccceEEEEeecccc
Confidence                   1346889998865

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=96.24  E-value=0.037  Score=49.47  Aligned_cols=27  Identities=33%  Similarity=0.438  Sum_probs=23.9

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+++|+|++|.||++++++.+.|+|+.
T Consensus       137 ~gi~H~dlkp~Nill~~~~~~kL~dfg  163 (343)
T cd07851         137 AGIIHRDLKPSNIAVNEDCELKILDFG  163 (343)
T ss_pred             CCeecCCCCHHHeEECCCCCEEEcccc
Confidence            469999999999999988888899974

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.21  E-value=0.014  Score=58.37  Aligned_cols=81  Identities=14%  Similarity=0.142  Sum_probs=44.3

Q ss_pred             cceeeeee-eCCccccceEEEEeCCc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC--CCceEEEE
Q 022304           22 THITKICP-VGGGCINLASRYGTDAG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP--TGGSYIIM   97 (299)
Q Consensus        22 ~~~~~~~~-~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~--~~~~~~v~   97 (299)
                      ..-..|.. +|.|....||+.+..+| .++||+..+.....+..=.+++..|..   --.|-+..+....  .....+++
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~---~~~~~~~~~~~a~~~~~~S~lv~  773 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKP---QMLPSIMHISSAHVFQNASVLVS  773 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhch---hhhcchHHHHHHHccCCcceeee
Confidence            34445644 68888899999998877 788899876433222111222233320   0112222221111  35678899


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      +|.+-+.+
T Consensus       774 ey~~~Gtl  781 (974)
T KOG1166|consen  774 EYSPYGTL  781 (974)
T ss_pred             eccccccH
Confidence            98876543

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=96.13  E-value=0.062  Score=50.50  Aligned_cols=140  Identities=16%  Similarity=0.129  Sum_probs=82.0

Q ss_pred             eeeeeeeCCccccceEEEEeCCc--cEEEEecCCC-----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCC
Q 022304           24 ITKICPVGGGCINLASRYGTDAG--SFFVKTNRSI-----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPT   90 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~-----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~   90 (299)
                      -+.++++|.|....|+...-.+.  .+|+|+-.+.           -...+-.|+++|..|.++.--.+-+++.+-+. +
T Consensus       563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd-d  641 (772)
T KOG1152|consen  563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED-D  641 (772)
T ss_pred             ceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec-C
Confidence            45688999999999888776544  6788876431           11335689999999987644344555543221 3


Q ss_pred             CceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhc
Q 022304           91 GGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQY  170 (299)
Q Consensus        91 ~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (299)
                      +..|+++| ..|...+  .                   |.+     +...|                ++.+..       
T Consensus       642 d~yyl~te-~hg~gID--L-------------------Fd~-----IE~kp----------------~m~E~e-------  671 (772)
T KOG1152|consen  642 DYYYLETE-VHGEGID--L-------------------FDF-----IEFKP----------------RMDEPE-------  671 (772)
T ss_pred             CeeEEEec-CCCCCcc--h-------------------hhh-----hhccC----------------ccchHH-------
Confidence            45555555 4444321  0                   110     00000                010000       


Q ss_pred             CChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          171 GDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                          ....+.++.+.++.+     -...++|+|++-.||+++.+|-..+|||.
T Consensus       672 ----Ak~IFkQV~agi~hl-----h~~~ivhrdikdenvivd~~g~~klidfg  715 (772)
T KOG1152|consen  672 ----AKLIFKQVVAGIKHL-----HDQGIVHRDIKDENVIVDSNGFVKLIDFG  715 (772)
T ss_pred             ----HHHHHHHHHhccccc-----cccCceecccccccEEEecCCeEEEeecc
Confidence                011223333333332     25689999999999999988878899984

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.12  E-value=0.14  Score=46.68  Aligned_cols=77  Identities=14%  Similarity=0.085  Sum_probs=50.4

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccce---eecccCC---CceEEE
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPF---KVGALPT---GGSYII   96 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~---~~~~~~~---~~~~~v   96 (299)
                      +|+=++.+|.|-...|||-.-.++.+.||++.......-.+|.++++..=    +.-+.++   +.|..+.   .+-|++
T Consensus       212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvm----LRHENILgFIaaD~~~~gs~TQLwLv  287 (513)
T KOG2052|consen  212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVM----LRHENILGFIAADNKDNGSWTQLWLV  287 (513)
T ss_pred             eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHH----hccchhhhhhhccccCCCceEEEEEe
Confidence            45557889999999999988888899999998744334457777776542    2223344   3333222   355777


Q ss_pred             EecccCC
Q 022304           97 MEFIEFG  103 (299)
Q Consensus        97 ~e~l~G~  103 (299)
                      .+|=+-+
T Consensus       288 TdYHe~G  294 (513)
T KOG2052|consen  288 TDYHEHG  294 (513)
T ss_pred             eecccCC
Confidence            7776544

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=96.09  E-value=0.038  Score=51.97  Aligned_cols=136  Identities=18%  Similarity=0.121  Sum_probs=83.0

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ++.-.++||.|....|||-.-. |.+.||+..-+     ....++.|+.+|+.=+..     =-+++.+..-.....++.
T Consensus       393 ev~l~~rIGsGsFGtV~Rg~wh-GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~-----NIlLFMG~~~~p~~AIiT  466 (678)
T KOG0193|consen  393 EVLLGERIGSGSFGTVYRGRWH-GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHE-----NILLFMGACMNPPLAIIT  466 (678)
T ss_pred             Hhhccceeccccccceeecccc-cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchh-----hheeeehhhcCCceeeee
Confidence            4445678999999999997654 67888877532     235577788877655432     224444433234448999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      .|++|..+-          ..+|.....                           |-+.    ..             .+
T Consensus       467 qwCeGsSLY----------~hlHv~etk---------------------------fdm~----~~-------------id  492 (678)
T KOG0193|consen  467 QWCEGSSLY----------THLHVQETK---------------------------FDMN----TT-------------ID  492 (678)
T ss_pred             hhccCchhh----------hhccchhhh---------------------------hhHH----HH-------------HH
Confidence            999997552          233433311                           1011    00             11


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..+++.+.+. +|.    ...+||.||+..||++.+++.+.|-||.
T Consensus       493 IAqQiaqGM~-YLH----AK~IIHrDLKSnNIFl~~~~kVkIgDFG  533 (678)
T KOG0193|consen  493 IAQQIAQGMD-YLH----AKNIIHRDLKSNNIFLHEDLKVKIGDFG  533 (678)
T ss_pred             HHHHHHHhhh-hhh----hhhhhhhhccccceEEccCCcEEEeccc
Confidence            2233333333 333    3589999999999999887778888874

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=96.07  E-value=0.12  Score=46.18  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=23.9

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+++|+|++|.||++++++...|+|+.
T Consensus       139 ~~ivH~dlkp~NIll~~~~~~kl~dfg  165 (345)
T cd07877         139 ADIIHRDLKPSNLAVNEDCELKILDFG  165 (345)
T ss_pred             CCeeecCCChHHEEEcCCCCEEEeccc
Confidence            469999999999999988878899974

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=96.02  E-value=0.054  Score=52.09  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=22.8

Q ss_pred             cceeccCCCCCCeeecC-CCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDK-NGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~-~~~~~iID~~  223 (299)
                      ..++|+|++|.|||++. ++...|+||.
T Consensus       274 ~gIiHRDLKP~NILl~~~~~~~KL~DFG  301 (566)
T PLN03225        274 TGIVHRDVKPQNIIFSEGSGSFKIIDLG  301 (566)
T ss_pred             CCEEeCcCCHHHEEEeCCCCcEEEEeCC
Confidence            47999999999999985 3567899974

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=95.98  E-value=0.012  Score=49.51  Aligned_cols=141  Identities=17%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             eeeeCCccccceEEEEe--CCccEEEEecCC---CCcchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceEEEE
Q 022304           27 ICPVGGGCINLASRYGT--DAGSFFVKTNRS---IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~--~~g~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~~v~   97 (299)
                      .+.++.|..+.+|.|+.  +++.|.+|.--.   ...+...+|++..+.+..   -.|-+++.+.-.+    ....|+++
T Consensus        26 ~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s---~~vl~l~dh~l~~~~D~~~~~yll~  102 (302)
T KOG2345|consen   26 QRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNS---PNVLRLVDHQLREEKDGKHEAYLLL  102 (302)
T ss_pred             eeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCC---cchHHHHHHHHHhhccCceeEEEEe
Confidence            35678888899999984  445788875432   233455677777766643   1222233221111    23467777


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      .|-.-+       .+.+.+.++   ...            |.             ++.+.+                ...
T Consensus       103 Pyy~~G-------sl~d~i~~~---k~k------------g~-------------~~sE~~----------------iL~  131 (302)
T KOG2345|consen  103 PYYKRG-------SLLDEIERL---KIK------------GN-------------FVSEAQ----------------ILW  131 (302)
T ss_pred             ehhccc-------cHHHHHHHH---hhc------------CC-------------ccCHHH----------------HHH
Confidence            765332       122222222   110            00             000001                122


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPAC  224 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~  224 (299)
                      .+..+.+.++.+..   ..+...|+|++|+|||+++.+.+.++|+..
T Consensus       132 if~gic~gL~~lH~---~~~~yAH~DiKP~NILls~~~~~vl~D~GS  175 (302)
T KOG2345|consen  132 IFLGICRGLEALHE---KEPPYAHRDIKPANILLSDSGLPVLMDLGS  175 (302)
T ss_pred             HHHHHHHHHHHHhc---cCCcccccCCCcceeEecCCCceEEEeccC
Confidence            33445555555443   456899999999999999878899999853

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=95.92  E-value=0.17  Score=41.62  Aligned_cols=76  Identities=13%  Similarity=0.002  Sum_probs=50.1

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCCC-------------------cchHHHHHHHHHHHH-hcC--CCCCccce
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSIG-------------------PSMFEGEALGLGAMY-ETR--TIRAPRPF   83 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-------------------~~~~~~E~~~l~~L~-~~~--~~~vP~~~   83 (299)
                      ...+++.|..-.+|.-- .+...++|+..+..                   .....+|..-+..|. ...  ..++|+.+
T Consensus         5 ~~~~i~~G~~R~cy~HP-~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    5 ESDLIAQGGERDCYQHP-DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             CCcccccCCCceEEECC-CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            44567777655566542 23467888876543                   345677888888887 432  34688888


Q ss_pred             eecccCCCceEEEEecccCC
Q 022304           84 KVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        84 ~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ....+ +-+..+++|.+...
T Consensus        84 G~veT-~~G~Glv~e~I~d~  102 (199)
T PF10707_consen   84 GFVET-NLGLGLVVELIRDA  102 (199)
T ss_pred             EEEec-CCceEEEEEEEECC
Confidence            88776 55678888888654

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=95.78  E-value=0.051  Score=46.13  Aligned_cols=74  Identities=14%  Similarity=-0.042  Sum_probs=41.8

Q ss_pred             eeeCCccccceEEEEeCCc--cEEEEecCC----C----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           28 CPVGGGCINLASRYGTDAG--SFFVKTNRS----I----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g--~~vlK~~~~----~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      +.++.|..+.+|++.....  .+.+|+...    .    .......|..+++.+..   -.+++++..... ....++++
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~   81 (260)
T cd08222           6 QRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDH---PAIVKFHASFLE-RDAFCIIT   81 (260)
T ss_pred             eeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCC---CcHHHHHHHHhc-CCceEEEE
Confidence            5678888889999876432  344444321    1    11123456666655532   123444433222 45789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        82 e~~~~~~l   89 (260)
T cd08222          82 EYCEGRDL   89 (260)
T ss_pred             EeCCCCCH
Confidence            99998743

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=95.66  E-value=0.064  Score=46.54  Aligned_cols=146  Identities=17%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-C-c---chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-G-P---SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-~-~---~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      +..+|.|.+..||++...+ | -+.+|.+... . +   ...-+|+..|+.|....   ...++..-.- ....++|+||
T Consensus         7 LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~N---LVnLiEVFrr-krklhLVFE~   82 (396)
T KOG0593|consen    7 LGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHEN---LVNLIEVFRR-KRKLHLVFEY   82 (396)
T ss_pred             hhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccch---HHHHHHHHHh-cceeEEEeee
Confidence            3478899999999998743 4 3455766532 1 1   22347888888886521   1222222211 5788999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          100 IEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       100 l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                      ++-.           .|..|...+.     |.+               .        ..+..                .+
T Consensus        83 ~dhT-----------vL~eLe~~p~-----G~~---------------~--------~~vk~----------------~l  107 (396)
T KOG0593|consen   83 CDHT-----------VLHELERYPN-----GVP---------------S--------ELVKK----------------YL  107 (396)
T ss_pred             cchH-----------HHHHHHhccC-----CCC---------------H--------HHHHH----------------HH
Confidence            9764           2222222221     110               0        01111                11


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-c-c---cCCchhhhhhh
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-C-Y---YGHNEAEFGMS  236 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~-~---~g~~~~Dla~~  236 (299)
                      -+++..+. +.    ...-.||+|++|.|||++.++++-+.||. + .   -|+...|...+
T Consensus       108 ~Q~l~ai~-~c----Hk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVAT  164 (396)
T KOG0593|consen  108 YQLLKAIH-FC----HKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVAT  164 (396)
T ss_pred             HHHHHHhh-hh----hhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhh
Confidence            12222221 11    13459999999999999999988999963 3 2   46777777644

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.01  E-value=0.17  Score=48.45  Aligned_cols=133  Identities=17%  Similarity=0.189  Sum_probs=79.3

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +.-+|-|....|+..+..  +.-|.+|.-.++      .-.....|.+++.....+ ++ .-.++..-.+ ....|+|||
T Consensus       373 l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~H-PF-L~~L~~~fQT-~~~l~fvme  449 (694)
T KOG0694|consen  373 LAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRH-PF-LVNLFSCFQT-KEHLFFVME  449 (694)
T ss_pred             EEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccC-Ce-Eeeccccccc-CCeEEEEEE
Confidence            345677877888888763  336778876542      223456788888777654 21 2223333333 678999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |+.|++.             +|-...  ..|.                 ..-..||.+                      
T Consensus       450 y~~Ggdm-------------~~~~~~--~~F~-----------------e~rarfyaA----------------------  475 (694)
T KOG0694|consen  450 YVAGGDL-------------MHHIHT--DVFS-----------------EPRARFYAA----------------------  475 (694)
T ss_pred             ecCCCcE-------------EEEEec--cccc-----------------HHHHHHHHH----------------------
Confidence            9999742             111111  0011                 000112211                      


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                        +++-.+. +|.    ...+|++|++.+|||+|.+|...|.|+.
T Consensus       476 --ev~l~L~-fLH----~~~IIYRDlKLdNiLLD~eGh~kiADFG  513 (694)
T KOG0694|consen  476 --EVVLGLQ-FLH----ENGIIYRDLKLDNLLLDTEGHVKIADFG  513 (694)
T ss_pred             --HHHHHHH-HHH----hcCceeeecchhheEEcccCcEEecccc
Confidence              1111122 332    4689999999999999999988999985

>KOG2269 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.00  E-value=0.057  Score=47.61  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           62 EGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        62 ~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++|..-|.....+ |+|||.|+...     ...+||+||...
T Consensus       333 EkEmhNL~RMq~~-GlpcP~vV~lk-----khvLVMsFiGd~  368 (531)
T KOG2269|consen  333 EKEMHNLSRMQKH-GLPCPQVVKLK-----KHVLVMSFIGDQ  368 (531)
T ss_pred             HHHHHHHHHHHhc-CCCCCceeeee-----cceEEEEeecCC
Confidence            4566666666666 79999999886     559999999654

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=94.99  E-value=0.11  Score=48.71  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=45.6

Q ss_pred             eeeCCccccceEEEEeCCc--cEEEEecCCCCcch-----HHHHHHHHHHHHhcCCCCCccceee-cccC-CCceEEEEe
Q 022304           28 CPVGGGCINLASRYGTDAG--SFFVKTNRSIGPSM-----FEGEALGLGAMYETRTIRAPRPFKV-GALP-TGGSYIIME   98 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~~~~~-----~~~E~~~l~~L~~~~~~~vP~~~~~-~~~~-~~~~~~v~e   98 (299)
                      +-+|.|....||+-+..+.  -+.+|...+..+..     +++|.++++.|+.      |.++.+ +... ....|+|.|
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkH------pniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKH------PNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCC------cchhhHHHhhcccceEEEEeh
Confidence            5678888889999876543  34456665433333     7889988887754      555533 2221 457899999


Q ss_pred             cccC
Q 022304           99 FIEF  102 (299)
Q Consensus        99 ~l~G  102 (299)
                      |..|
T Consensus        82 ~a~g   85 (808)
T KOG0597|consen   82 YAVG   85 (808)
T ss_pred             hhhh
Confidence            9887

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=94.95  E-value=0.015  Score=47.71  Aligned_cols=28  Identities=25%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             CcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          196 EPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ...+||+|++|+|||++.+|++.|.||.
T Consensus       167 kL~vIHRDvKPsNiLIn~~GqVKiCDFG  194 (282)
T KOG0984|consen  167 KLSVIHRDVKPSNILINYDGQVKICDFG  194 (282)
T ss_pred             HhhhhhccCCcceEEEccCCcEEEcccc
Confidence            4689999999999999999999999985

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=94.95  E-value=0.047  Score=49.16  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=44.7

Q ss_pred             eeeCCccccceEEEEe-CCc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecc-cC-CCceEEEE
Q 022304           28 CPVGGGCINLASRYGT-DAG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGA-LP-TGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~-~~-~~~~~~v~   97 (299)
                      +.+|.|.+..|-+.+- ..| .+.+|.-+.+      ....+++|++++..|..      |.++..-+ +. .+...++|
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNH------PhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNH------PHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCC------CceeehhhhhcCCceEEEEE
Confidence            4567777666555543 234 4455654431      23457899999988864      55554322 11 46889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||..|+.+
T Consensus       133 EYaS~GeL  140 (668)
T KOG0611|consen  133 EYASGGEL  140 (668)
T ss_pred             EecCCccH
Confidence            99998744

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=94.93  E-value=0.021  Score=50.36  Aligned_cols=48  Identities=8%  Similarity=0.004  Sum_probs=33.2

Q ss_pred             eeeeeeeCCccccceEEEEe--CCccEEEEecCCCCcchHHHHHHHHHHHH
Q 022304           24 ITKICPVGGGCINLASRYGT--DAGSFFVKTNRSIGPSMFEGEALGLGAMY   72 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~--~~g~~vlK~~~~~~~~~~~~E~~~l~~L~   72 (299)
                      +....-+|.|..+.||+...  +++.+.+|-.-++.+ .-.+|..+++.+.
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r-~knrEl~im~~l~   75 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR-YKNRELQIMRKLD   75 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC-cCcHHHHHHHhcC
Confidence            34566678898899999765  345888887655433 2357999998553

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=94.82  E-value=0.29  Score=43.18  Aligned_cols=52  Identities=12%  Similarity=0.161  Sum_probs=38.4

Q ss_pred             CccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC-ceEEEEecc
Q 022304           45 AGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG-GSYIIMEFI  100 (299)
Q Consensus        45 ~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~-~~~~v~e~l  100 (299)
                      +..+.+|+.+.. ....+.-|++.++.|..  ..-+|.+|.++..  | ...+|++-+
T Consensus        53 ne~VAIKfEPrkS~APQLrdEYr~YKlL~g--~~GIP~vYYFGqe--G~~NiLVidLL  106 (449)
T KOG1165|consen   53 NEPVAIKFEPRKSEAPQLRDEYRTYKLLGG--TEGIPQVYYFGQE--GKYNILVIDLL  106 (449)
T ss_pred             CceEEEEeccccCCcchHHHHHHHHHHHcC--CCCCCceeeeccc--cchhhhhhhhh
Confidence            347788988743 34678999999999985  3568999999873  4 456676654

>PHA02882 putative serine/threonine kinase; Provisional

Probab=94.78  E-value=0.032  Score=48.69  Aligned_cols=27  Identities=33%  Similarity=0.416  Sum_probs=24.0

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.|||+++++.+.|+||.
T Consensus       145 ~~iiHrDiKp~Nill~~~~~~~l~DFG  171 (294)
T PHA02882        145 HGISHGDIKPENIMVDGNNRGYIIDYG  171 (294)
T ss_pred             CCeecCCCCHHHEEEcCCCcEEEEEcC
Confidence            479999999999999887778899985

>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function

Probab=94.66  E-value=0.037  Score=50.37  Aligned_cols=58  Identities=22%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             CCCcceeccCCCCCCeeec--CCCCeEEEc---c-ccccCCchhhhhhh--hh------cCCC--------hhhHHHhhh
Q 022304          194 NVEPCLLHGDLWSGNISSD--KNGEPVILD---P-ACYYGHNEAEFGMS--WC------AGFG--------GSFYNSYFE  251 (299)
Q Consensus       194 ~~~~~liHgDl~~~Nvl~~--~~~~~~iID---~-~~~~g~~~~Dla~~--~~------~~~~--------~~f~~~Y~~  251 (299)
                      ..+.++|+||+|.+|+=.-  +++ ..++|   | +++.|+++||+-.+  ++      .+++        ..|+++|.+
T Consensus        40 ~~~~v~icGD~Hl~NFG~~~~~~~-~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~~~~~~~~Y~~  118 (385)
T PF10009_consen   40 SGPPVWICGDAHLENFGAFASPEG-RVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKAVRAFLEGYRE  118 (385)
T ss_pred             CCCceEEeccchhhccCcccCCCC-CEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3688999999999998653  334 45666   6 48999999999865  11      2444        368888887


Q ss_pred             h
Q 022304          252 V  252 (299)
Q Consensus       252 ~  252 (299)
                      .
T Consensus       119 ~  119 (385)
T PF10009_consen  119 A  119 (385)
T ss_pred             H
Confidence            5

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=94.43  E-value=0.18  Score=47.70  Aligned_cols=43  Identities=33%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC-CCeEEEc
Q 022304          176 YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN-GEPVILD  221 (299)
Q Consensus       176 ~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~-~~~~iID  221 (299)
                      ..|..+++..|..+..   ..|.+||+|++++||+++++ |.+.|=|
T Consensus       146 k~W~RQILkGL~yLHs---~~PPIIHRDLKCDNIFinG~~G~VKIGD  189 (632)
T KOG0584|consen  146 KSWCRQILKGLVYLHS---QDPPIIHRDLKCDNIFVNGNLGEVKIGD  189 (632)
T ss_pred             HHHHHHHHHHhhhhhc---CCCCccccccccceEEEcCCcCceeecc
Confidence            3455566666654433   46789999999999999765 4455655

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=94.37  E-value=0.047  Score=51.50  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             cceeccCCCCCCeeec-CCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSD-KNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~-~~~~~~iID~~  223 (299)
                      .+++|+||+|+|||++ ..+..-|+||.
T Consensus       434 ~gvvhRDLkp~NIL~~~~~g~lrltyFG  461 (612)
T KOG0603|consen  434 QGVVHRDLKPGNILLDGSAGHLRLTYFG  461 (612)
T ss_pred             cCeeecCCChhheeecCCCCcEEEEEec
Confidence            6999999999999994 55667899963

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=94.10  E-value=0.25  Score=45.29  Aligned_cols=73  Identities=21%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             eeeeCCccccceEEEEe--CCccEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeecccC--CCc-eEEE
Q 022304           27 ICPVGGGCINLASRYGT--DAGSFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP--TGG-SYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~--~~g~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~--~~~-~~~v   96 (299)
                      ++.+|.|....++.+..  ++..||+|.-.-     ..+.....|..++..+      .-|-++.+-+.-  ++. -+++
T Consensus         9 ~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~------~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    9 LRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKL------LHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             hhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhc------cCCCeeeeccchhcCCceEEEE
Confidence            45677777666666654  333899986642     1223334566555443      347777664432  455 8999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |+|++|+++
T Consensus        83 m~Y~eGg~l   91 (426)
T KOG0589|consen   83 MEYCEGGDL   91 (426)
T ss_pred             EeecCCCCH
Confidence            999999843

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=93.44  E-value=0.056  Score=46.25  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=24.2

Q ss_pred             CCcceeccCCCCCCeeecCCCCeEEEcc
Q 022304          195 VEPCLLHGDLWSGNISSDKNGEPVILDP  222 (299)
Q Consensus       195 ~~~~liHgDl~~~Nvl~~~~~~~~iID~  222 (299)
                      ...++||+|++|.|||+|..|++.+.||
T Consensus       209 eKH~viHRDvKPSNILlDe~GniKlCDF  236 (391)
T KOG0983|consen  209 EKHGVIHRDVKPSNILLDERGNIKLCDF  236 (391)
T ss_pred             HhcceeecccCccceEEccCCCEEeecc
Confidence            4679999999999999998887777775

>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain

Probab=93.27  E-value=0.34  Score=40.52  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=47.4

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecc---c---------------
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGA---L---------------   88 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~---~---------------   88 (299)
                      +...++|..-.+..+.+++|.+|+|..+.     +..|.-. ..|+...++|+|+.--...   .               
T Consensus         4 ~i~~s~s~~~~~~F~~s~~~a~ViK~s~t-----i~~E~~~-~~La~~LgVpiPq~rvi~~~~~E~~e~~~~L~~a~~~~   77 (238)
T cd05124           4 AIDLSDSGVFGALFVESESGAIVVKSSPN-----IASEYFL-SKLAKILGLPIPQMRVLEWNSSEFTEMSENLLKASSED   77 (238)
T ss_pred             EEEecCCceEEEEEEcCCCcEEEEEcCcc-----HHHHHHH-HHHHHHhCCCCCceeeeecCCHHHHHHHHHHHHHHhcc
Confidence            34456665556677777788999999854     2444433 3556666888887553221   1               


Q ss_pred             C----------CCceEEEEecccCCCC
Q 022304           89 P----------TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        89 ~----------~~~~~~v~e~l~G~~~  105 (299)
                      .          .-..+++|||++|.++
T Consensus        78 ~~~~~~i~~el~~~~flimeYv~G~~l  104 (238)
T cd05124          78 ECLERRITLELEKAYLLIMEYVPGITL  104 (238)
T ss_pred             hhHHHHHHHHHhhhheeeeeecCCccc
Confidence            0          1237899999999876

The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=93.05  E-value=0.2  Score=47.22  Aligned_cols=71  Identities=20%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeec-c-cCCCceEEEEecc
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVG-A-LPTGGSYIIMEFI  100 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~-~-~~~~~~~~v~e~l  100 (299)
                      +|..++=+|.|....||+=+..+..+.||-.+.    +-+.++   ++|+.   +.-|.++.+. . +...-.+++|||+
T Consensus       125 ~IsELeWlGSGaQGAVF~Grl~netVAVKKV~e----lkETdI---KHLRk---LkH~NII~FkGVCtqsPcyCIiMEfC  194 (904)
T KOG4721|consen  125 EISELEWLGSGAQGAVFLGRLHNETVAVKKVRE----LKETDI---KHLRK---LKHPNIITFKGVCTQSPCYCIIMEFC  194 (904)
T ss_pred             HhhhhhhhccCcccceeeeeccCceehhHHHhh----hhhhhH---HHHHh---ccCcceeeEeeeecCCceeEEeeecc
Confidence            566677788888888999888877887876532    223444   45543   3447777652 1 1134568999999


Q ss_pred             cCC
Q 022304          101 EFG  103 (299)
Q Consensus       101 ~G~  103 (299)
                      .-+
T Consensus       195 a~G  197 (904)
T KOG4721|consen  195 AQG  197 (904)
T ss_pred             ccc
Confidence            765

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=92.80  E-value=0.15  Score=42.71  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=43.4

Q ss_pred             eeeCCccccceEEEEeCCccEEE--EecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           28 CPVGGGCINLASRYGTDAGSFFV--KTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g~~vl--K~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .++|.|-...||........|++  |+....      ....+++|.++-.+|..-   .+-+.|..--+ +...|+++||
T Consensus        28 r~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hp---nilrlY~~fhd-~~riyLilEy  103 (281)
T KOG0580|consen   28 RPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHP---NILRLYGYFHD-SKRIYLILEY  103 (281)
T ss_pred             ccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCc---cHHhhhhheec-cceeEEEEEe
Confidence            46777877899998877665554  654321      234556666666666431   12233322111 4688999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      ..+.
T Consensus       104 a~~g  107 (281)
T KOG0580|consen  104 APRG  107 (281)
T ss_pred             cCCc
Confidence            8775

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=92.00  E-value=0.15  Score=51.82  Aligned_cols=50  Identities=14%  Similarity=0.110  Sum_probs=34.2

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecC-CC---CcchHHHHHHHHHHHHh
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNR-SI---GPSMFEGEALGLGAMYE   73 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~-~~---~~~~~~~E~~~l~~L~~   73 (299)
                      ...++.+|.|....||+|+.. || .|.+|.-+ ..   ....+.+|+.++..|..
T Consensus       481 FEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnH  536 (1351)
T KOG1035|consen  481 FEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNH  536 (1351)
T ss_pred             hHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCC
Confidence            335667888888999999974 45 77776443 31   12446789988877753

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=91.98  E-value=0.15  Score=43.75  Aligned_cols=53  Identities=26%  Similarity=0.240  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc--cc--cCCchhhhhh
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA--CY--YGHNEAEFGM  235 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~--~~--~g~~~~Dla~  235 (299)
                      .+.++++.+..+.     ...++|.|++|.|||++++-...|-||.  |.  -|....|+.-
T Consensus       128 iMrqlfegVeylH-----a~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekLrelCG  184 (411)
T KOG0599|consen  128 IMRQLFEGVEYLH-----ARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRELCG  184 (411)
T ss_pred             HHHHHHHHHHHHH-----HhhhhhcccChhheeeccccceEEeccceeeccCCchhHHHhcC
Confidence            3444555544332     2579999999999999988778899963  32  5777777764

>PHA00451 protein kinase

Probab=91.92  E-value=0.12  Score=43.77  Aligned_cols=37  Identities=38%  Similarity=0.541  Sum_probs=28.2

Q ss_pred             ceeccCCCCCCeeecCCCCeEEEccccccCCchhhhh
Q 022304          198 CLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFG  234 (299)
Q Consensus       198 ~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla  234 (299)
                      ++--=|.|+||||+++++.++|-|+-++..|...+=+
T Consensus       189 GIASFDmHSGNiMf~~~g~p~ITDPVSFS~dr~re~G  225 (362)
T PHA00451        189 GIASFDMHSGNIMFDQDGVPYITDPVSFSHDREREPG  225 (362)
T ss_pred             hhhcccccCCceeeCCCCCeEecCCccccCccccCCC
Confidence            3445599999999999999999998666655555443

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=91.59  E-value=0.12  Score=43.12  Aligned_cols=30  Identities=40%  Similarity=0.583  Sum_probs=26.5

Q ss_pred             CCcceeccCCCCCCeeecCCCCeEEEcccc
Q 022304          195 VEPCLLHGDLWSGNISSDKNGEPVILDPAC  224 (299)
Q Consensus       195 ~~~~liHgDl~~~Nvl~~~~~~~~iID~~~  224 (299)
                      .....+|||..|+|||.|+.|-..++|+.+
T Consensus       160 ~~~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  160 ENQHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             cCCCeecCCCChhheeecCCCCEEecChhh
Confidence            467899999999999999999889999754

The function of this family is unknown.

>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes

Probab=91.44  E-value=1  Score=38.81  Aligned_cols=77  Identities=12%  Similarity=0.138  Sum_probs=39.1

Q ss_pred             ceeeeeeeCCc-cccceEEEEeCCc----cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccce--eeccc-------
Q 022304           23 HITKICPVGGG-CINLASRYGTDAG----SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPF--KVGAL-------   88 (299)
Q Consensus        23 ~~~~~~~~~~G-~~n~~y~v~~~~g----~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~--~~~~~-------   88 (299)
                      .+.++.....| .++.||.|.+.++    .+|+|..+.     ++.|.-. ..|+...++|+|+.-  .....       
T Consensus        26 ~l~sv~~s~~g~ns~gv~fv~~f~~~~~~avViK~s~t-----~~~E~~~-s~La~~Lgv~~P~~Rii~~~~~E~~e~~~   99 (275)
T PF09192_consen   26 SLSSVHHSEHGVNSGGVFFVATFSGSKEEAVVIKFSST-----IQQEVFA-SELARWLGVPTPQMRIIESSSSEFQEMSE   99 (275)
T ss_dssp             -CCCEEEEEE-STTS-EEEEEETTE----EEEEE--TT-----HHHHHHH-HHHHHHCT-----EEEEESSSHHHHHHHH
T ss_pred             HhhhHHhhccccCCCCEEEEEEcCCCceEEEEEecCCc-----hHHHHHH-HHHHHHhCCCCCceeeeecCCHHHHHHHH
Confidence            45567776666 2456777777666    789999854     5555543 356666788888754  32221       


Q ss_pred             ---------C----------CCceEEEEecccCCCC
Q 022304           89 ---------P----------TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        89 ---------~----------~~~~~~v~e~l~G~~~  105 (299)
                               +          ....+++|||++|.++
T Consensus       100 ~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~~L  135 (275)
T PF09192_consen  100 ALLFATSNDDELGDFICSELDKAFFLIMEYVPGKPL  135 (275)
T ss_dssp             HHH----HH-SSS-HHHHHCT-SEEEEEE---EEES
T ss_pred             HHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence                     0          2345889999999876

It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=91.36  E-value=0.12  Score=44.14  Aligned_cols=28  Identities=29%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             CcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          196 EPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..-+||+|++|.|||++..|.+.+.||.
T Consensus       186 ~lkiIHRDvKPSNILldr~G~vKLCDFG  213 (361)
T KOG1006|consen  186 ELKIIHRDVKPSNILLDRHGDVKLCDFG  213 (361)
T ss_pred             HhhhhhccCChhheEEecCCCEeeeccc
Confidence            4568999999999999988878888875

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=91.05  E-value=1.2  Score=42.72  Aligned_cols=149  Identities=19%  Similarity=0.150  Sum_probs=85.6

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc--cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           23 HITKICPVGGGCINLASRYGTDAG--SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +|+=--++|||++..||.=.-..-  .+.||.-..++  -..+-+|+++++.+..   -...+++..+.. +.-.|++.|
T Consensus       268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikH---pNLVqLLGVCT~-EpPFYIiTE  343 (1157)
T KOG4278|consen  268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH---PNLVQLLGVCTH-EPPFYIITE  343 (1157)
T ss_pred             heeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcC---ccHHHHhhhhcc-CCCeEEEEe
Confidence            344446789999999998544322  44555544432  2456788998888864   123455666543 567789999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |..-+       .|-+.|++-.+...+                       ...-.++.                      
T Consensus       344 fM~yG-------NLLdYLRecnr~ev~-----------------------avvLlyMA----------------------  371 (1157)
T KOG4278|consen  344 FMCYG-------NLLDYLRECNRSEVP-----------------------AVVLLYMA----------------------  371 (1157)
T ss_pred             cccCc-------cHHHHHHHhchhhcc-----------------------hhHHHHHH----------------------
Confidence            98765       334455443222210                       00001111                      


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc---cccCCchhhh
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA---CYYGHNEAEF  233 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~---~~~g~~~~Dl  233 (299)
                       .++... .++|+    ..-+||+||-..|+|+.++..+.|-||.   .+-||-..--
T Consensus       372 -tQIsSa-MeYLE----kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAH  423 (1157)
T KOG4278|consen  372 -TQISSA-MEYLE----KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAH  423 (1157)
T ss_pred             -HHHHHH-HHHHH----HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecc
Confidence             111111 12332    3578999999999999888767788874   2456654433

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=90.26  E-value=0.34  Score=41.33  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=23.3

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|.||++++++...++|+.
T Consensus       132 ~~i~H~dikp~nili~~~~~~kl~dfg  158 (273)
T cd05074         132 KNFIHRDLAARNCMLNENMTVCVADFG  158 (273)
T ss_pred             CCEeecccchhhEEEcCCCCEEECccc
Confidence            469999999999999877777888964

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>PLN00181 protein SPA1-RELATED; Provisional

Probab=90.25  E-value=0.38  Score=48.34  Aligned_cols=26  Identities=0%  Similarity=0.021  Sum_probs=21.9

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEcc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDP  222 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~  222 (299)
                      ..++|+|++|.|||+++.+...++|+
T Consensus        99 ~gIvHrDlKP~NiLl~~~~~~k~~d~  124 (793)
T PLN00181         99 QGIVVHNVRPSCFVMSSFNHVSFIES  124 (793)
T ss_pred             CCeeeccCCchhEEEcccCcEEEeec
Confidence            57999999999999987666677775

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=90.03  E-value=0.42  Score=44.65  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=25.4

Q ss_pred             CcceeccCCCCCCeeecCCCC-eEEEccc-cc-cCC
Q 022304          196 EPCLLHGDLWSGNISSDKNGE-PVILDPA-CY-YGH  228 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~-~~iID~~-~~-~g~  228 (299)
                      .+.++|+|++|+|||+..+.. .-|+||. ++ .+.
T Consensus       554 ~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~e  589 (752)
T KOG0670|consen  554 KCGVLHADIKPDNILVNESKNILKLCDFGSASFASE  589 (752)
T ss_pred             hcCeeecccCccceEeccCcceeeeccCcccccccc
Confidence            578999999999999976553 4689985 43 444

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=89.38  E-value=0.36  Score=43.63  Aligned_cols=35  Identities=31%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             CcceeccCCCCCCeee--cCCCCe--EEEccccccCCch
Q 022304          196 EPCLLHGDLWSGNISS--DKNGEP--VILDPACYYGHNE  230 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~--~~~~~~--~iID~~~~~g~~~  230 (299)
                      ..++-|.|++++|||+  |+|+.+  .|-||.||..|-.
T Consensus       359 ~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~  397 (598)
T KOG4158|consen  359 KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDN  397 (598)
T ss_pred             HccchhhcccccceEEEecCCCCcEEEEcccceeeeccc
Confidence            4689999999999997  455544  4667877665543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.16  E-value=0.45  Score=40.81  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=24.2

Q ss_pred             CcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          196 EPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ...++|+|++|||+|+..|-...|.||.
T Consensus       174 sA~ILHRDIKPGNLLVNSNCvLKICDFG  201 (449)
T KOG0664|consen  174 TANILHRDIKPGNLLVNSNCILKICDFG  201 (449)
T ss_pred             hcchhhccCCCccEEeccCceEEecccc
Confidence            4689999999999999877667899985

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=88.72  E-value=0.32  Score=42.52  Aligned_cols=28  Identities=29%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          196 EPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..+++|+||+|.|+++..+...-|.|+.
T Consensus       136 s~~IihRdLkPsnivv~~~~~lKi~dfg  163 (369)
T KOG0665|consen  136 SAGIIHRDLKPSNIVVNSDCTLKILDFG  163 (369)
T ss_pred             hcceeecccCcccceecchhheeeccch
Confidence            4689999999999999766667788874

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=88.45  E-value=0.5  Score=41.82  Aligned_cols=32  Identities=22%  Similarity=0.246  Sum_probs=26.7

Q ss_pred             CcceeccCCCCCCeeecCCCCeEEEccc-cccC
Q 022304          196 EPCLLHGDLWSGNISSDKNGEPVILDPA-CYYG  227 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g  227 (299)
                      ...++|+|++|+|++++.+-...|.||. +...
T Consensus       143 SAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~  175 (359)
T KOG0660|consen  143 SANVIHRDLKPSNLLLNADCDLKICDFGLARYL  175 (359)
T ss_pred             cccccccccchhheeeccCCCEEeccccceeec
Confidence            4689999999999999888778999985 5443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=88.03  E-value=0.3  Score=42.52  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             CcceeccCCCCCCeeecCCCCeEEEcccc--ccCCchh
Q 022304          196 EPCLLHGDLWSGNISSDKNGEPVILDPAC--YYGHNEA  231 (299)
Q Consensus       196 ~~~liHgDl~~~Nvl~~~~~~~~iID~~~--~~g~~~~  231 (299)
                      ..+++|||+.+.|++++++|...+=|+..  ..|....
T Consensus       163 ~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~  200 (288)
T PF14531_consen  163 SYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYR  200 (288)
T ss_dssp             HTTEEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEE
T ss_pred             hcceEecccceeeEEEcCCCCEEEcChHHHeecCceee
Confidence            36899999999999999999777878753  2555544

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=87.91  E-value=5.1  Score=37.52  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=82.3

Q ss_pred             eeeCCccccceEEEEe--CCc----cEEEEecCC-C--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           28 CPVGGGCINLASRYGT--DAG----SFFVKTNRS-I--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~--~~g----~~vlK~~~~-~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ..+|.|....||+-+.  .++    .+.+|.... .  .   ...+-.|+++++.|..   ..|-+.|..... ....++
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H---~NVVr~yGVa~~-~~Pl~i  238 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNH---PNVVRFYGVAVL-EEPLML  238 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCC---CCEEEEEEEEcC-CCccEE
Confidence            6789999888888544  322    245565543 1  1   2345679999988753   356667765433 456789


Q ss_pred             EEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHH
Q 022304           96 IMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTI  175 (299)
Q Consensus        96 v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (299)
                      +||.+.|+.       |-..|.+-...-                         ...     .++..              
T Consensus       239 vmEl~~gGs-------L~~~L~k~~~~v-------------------------~~~-----ek~~~--------------  267 (474)
T KOG0194|consen  239 VMELCNGGS-------LDDYLKKNKKSL-------------------------PTL-----EKLRF--------------  267 (474)
T ss_pred             EEEecCCCc-------HHHHHHhCCCCC-------------------------CHH-----HHHHH--------------
Confidence            999999983       334444422100                         000     11111              


Q ss_pred             HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCC
Q 022304          176 YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGH  228 (299)
Q Consensus       176 ~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~  228 (299)
                         .-.+...+.. +.    ...+||+|+-..|+|++.++.+-|=||. +..|+
T Consensus       268 ---~~~AA~Gl~Y-Lh----~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~  313 (474)
T KOG0194|consen  268 ---CYDAARGLEY-LH----SKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGS  313 (474)
T ss_pred             ---HHHHHhHHHH-HH----HCCCcchhHhHHHheecCCCeEEeCccccccCCc
Confidence               1112222332 22    3589999999999999987766888875 45665

>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.63  E-value=1.3  Score=38.72  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=42.0

Q ss_pred             CCCcceeccCCCCCCeee--cCCCCe--EEEcc-ccccCCchhhhhhhh--h------cCCC--------hhhHHHhhhh
Q 022304          194 NVEPCLLHGDLWSGNISS--DKNGEP--VILDP-ACYYGHNEAEFGMSW--C------AGFG--------GSFYNSYFEV  252 (299)
Q Consensus       194 ~~~~~liHgDl~~~Nvl~--~~~~~~--~iID~-~~~~g~~~~Dla~~~--~------~~~~--------~~f~~~Y~~~  252 (299)
                      +.|.+|+-||+|.+|.=-  +.+|.+  -|=|| ++..|++.+|+..+.  +      .+.+        +.|+.+|...
T Consensus        55 ~~p~tw~cGD~HLgN~ga~~~~~G~V~f~i~DFDe~~~g~~~~DlvRl~~Sl~~a~Rs~~L~d~d~~~~~~~~v~~Y~~A  134 (410)
T COG4320          55 KTPFTWLCGDAHLGNFGAARNSKGNVVFKIADFDEGHLGQYIWDLVRLAVSLVLAGRSNGLNDADIEKAIKIMVQAYKMA  134 (410)
T ss_pred             CCCceEEecccccccchhhccCCCceEEEecccchhhccchHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHh
Confidence            368899999999999853  223433  35567 478999999999752  1      2232        3689999655


Q ss_pred             CC
Q 022304          253 MP  254 (299)
Q Consensus       253 ~~  254 (299)
                      .+
T Consensus       135 a~  136 (410)
T COG4320         135 AF  136 (410)
T ss_pred             hc
Confidence            44

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=87.32  E-value=0.85  Score=39.76  Aligned_cols=75  Identities=17%  Similarity=0.031  Sum_probs=41.2

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceee-cccCCCc--eEEEEec
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKV-GALPTGG--SYIIMEF   99 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~-~~~~~~~--~~~v~e~   99 (299)
                      ++.+-+|-|-...|-.+...  +.+|.||+-....+  .++|++. .|+... .-.+..++.. ..+-.+.  -.+|||.
T Consensus        65 is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~K--ARrEVeL-Hw~~s~-h~~iV~IidVyeNs~~~rkcLLiVmE~  140 (400)
T KOG0604|consen   65 ISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPK--ARREVEL-HWMASG-HPHIVSIIDVYENSYQGRKCLLIVMEC  140 (400)
T ss_pred             ehhhhhccccCCceEEEEeccchhhhHHHHHhcCHH--HHhHhhh-hhhhcC-CCceEEeehhhhhhccCceeeEeeeec
Confidence            34577787876666665542  34888888765333  4567763 355432 1122333321 1111343  4578999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      ++|+
T Consensus       141 meGG  144 (400)
T KOG0604|consen  141 MEGG  144 (400)
T ss_pred             ccch
Confidence            9995

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=86.31  E-value=0.79  Score=44.50  Aligned_cols=138  Identities=21%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             ceeeeeeeCCccccceEEEEe--CCc---cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           23 HITKICPVGGGCINLASRYGT--DAG---SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~--~~g---~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      .|.-.+.+|.|....|+|-+-  .+|   .+.||+-+.+.    ...+.+|+..+-.|...   -+-++|....+  -..
T Consensus       111 ~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~---hliRLyGvVl~--qp~  185 (1039)
T KOG0199|consen  111 QIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHP---HLIRLYGVVLD--QPA  185 (1039)
T ss_pred             HHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCc---ceeEEeeeecc--chh
Confidence            444567888888888888654  334   57889887542    34567888877666431   23344443211  112


Q ss_pred             EEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCCh
Q 022304           94 YIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDS  173 (299)
Q Consensus        94 ~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (299)
                      -||+|          ...+|..|.+||+....  .|                        +.     ..+.         
T Consensus       186 mMV~E----------LaplGSLldrLrka~~~--~l------------------------lv-----~~Lc---------  215 (1039)
T KOG0199|consen  186 MMVFE----------LAPLGSLLDRLRKAKKA--IL------------------------LV-----SRLC---------  215 (1039)
T ss_pred             hHHhh----------hcccchHHHHHhhcccc--ce------------------------eH-----HHHH---------
Confidence            23333          33568889999994421  01                        00     0011         


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          174 TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       174 ~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                         ....++...+ .+|+    -..+||+|+-..|+|+...+.+.|.||.
T Consensus       216 ---dya~QiA~aM-~YLe----skrlvHRDLAARNlllasprtVKI~DFG  257 (1039)
T KOG0199|consen  216 ---DYAMQIAKAM-QYLE----SKRLVHRDLAARNLLLASPRTVKICDFG  257 (1039)
T ss_pred             ---HHHHHHHHHH-HHHh----hhhhhhhhhhhhhheecccceeeeeccc
Confidence               1111222221 2333    3689999999999999765667899975

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=84.53  E-value=7.6  Score=36.27  Aligned_cols=48  Identities=15%  Similarity=-0.027  Sum_probs=32.8

Q ss_pred             eeeeCCccccceEEEEeCCc-cE-EEEecCCC--CcchHHHHHHHHHHHHhc
Q 022304           27 ICPVGGGCINLASRYGTDAG-SF-FVKTNRSI--GPSMFEGEALGLGAMYET   74 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~-vlK~~~~~--~~~~~~~E~~~l~~L~~~   74 (299)
                      +.++|=|..++||......+ +| .+|+..+.  .....-.|+.+|+.++..
T Consensus        83 ~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~  134 (590)
T KOG1290|consen   83 QRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREG  134 (590)
T ss_pred             EEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhc
Confidence            56788788899999876544 44 45887652  122234688889888864

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.51  E-value=3.4  Score=40.71  Aligned_cols=78  Identities=17%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-------cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-------SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-------~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      .+.-++.+|.|....||.-+..+.       -+.||.-...    .+..+++|++.+..|..   --|.+++..+.. +.
T Consensus       487 ~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H---~nIVrLlGVC~~-~~  562 (774)
T KOG1026|consen  487 DIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQH---PNIVRLLGVCRE-GD  562 (774)
T ss_pred             heeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccC---CCeEEEEEEEcc-CC
Confidence            455567888898888888776422       2445654432    34668999999888864   346777777653 45


Q ss_pred             ceEEEEecccCCC
Q 022304           92 GSYIIMEFIEFGS  104 (299)
Q Consensus        92 ~~~~v~e~l~G~~  104 (299)
                      -.+||+||.+-++
T Consensus       563 P~~MvFEYm~~GD  575 (774)
T KOG1026|consen  563 PLCMVFEYMDHGD  575 (774)
T ss_pred             eeEEEEEeccccc
Confidence            6799999997653

>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT)

Probab=84.47  E-value=5  Score=27.52  Aligned_cols=52  Identities=17%  Similarity=0.162  Sum_probs=30.6

Q ss_pred             cEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           47 SFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        47 ~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++|+|..... .......|+..++..+. .|++||..-....  .+..+++.++.+
T Consensus        28 ~~IvK~~~~~~~~~~~~nE~~~~~lA~~-~Gi~v~~~~l~~~--~~~~~l~v~RFD   80 (81)
T PF07805_consen   28 THIVKFPSSRDDPDLVENEYACMRLARA-AGIPVPETRLIRF--GDRPALAVERFD   80 (81)
T ss_dssp             SEEEE-S-CEEETTHHHHHHHHHHHHHH-TT-----EEEEEE--TTEEEEEEE-TT
T ss_pred             eEEEeCCCcccccchHHHHHHHHHHHHH-cCCCcCceEEEEE--CCeEEEEEeCCC
Confidence            8999998865 55667889988876554 5899998776443  346777776643

This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=83.55  E-value=9.2  Score=39.22  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             ceeeeeeeCCccccceEEEEeC--Ccc-----EEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD--AGS-----FFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~--~g~-----~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      .+.....+|.|....||+-+..  +|+     +-+|--...    ....+-.|+.+++.+..   -.|-+++..+-. .+
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~H---pNiv~liGv~l~-~~  768 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDH---PNIVSLIGVCLD-SG  768 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCC---cceeeEEEeecC-CC
Confidence            4445677899999999997653  342     333332221    11334456655555542   234555565544 67


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      .+++++||++|+++
T Consensus       769 ~~~i~leyM~gGDL  782 (1025)
T KOG1095|consen  769 PPLILLEYMEGGDL  782 (1025)
T ss_pred             CcEEEehhcccCcH
Confidence            89999999999854

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=81.74  E-value=2  Score=39.70  Aligned_cols=56  Identities=20%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-c---ccCCchhhhhhh
Q 022304          176 YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-C---YYGHNEAEFGMS  236 (299)
Q Consensus       176 ~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~---~~g~~~~Dla~~  236 (299)
                      ...+.++++.+..+.     ..++-|+|++|.|||+.+...+-|=||. |   ..-+|..|...+
T Consensus       113 rnim~QilqGL~hiH-----k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVST  172 (538)
T KOG0661|consen  113 RNIMYQILQGLAHIH-----KHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVST  172 (538)
T ss_pred             HHHHHHHHHHHHHHH-----hcCcccccCChhheEecccceeEecccccccccccCCCcchhhhc
Confidence            445556666665443     4699999999999999865557788974 3   367888888754

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=81.48  E-value=0.73  Score=42.14  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=18.3

Q ss_pred             cceeccCCCCCCeeecCCCC----eEEEc
Q 022304          197 PCLLHGDLWSGNISSDKNGE----PVILD  221 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~----~~iID  221 (299)
                      --++|+|+|||||++..+..    .+++|
T Consensus       364 DNFvHaDlHPGNVlirf~~t~~~~~~~~~  392 (565)
T KOG1236|consen  364 DNFVHADLHPGNVLIRFNKTEDNLRGVHK  392 (565)
T ss_pred             hcceecccCCCcEEEEecCCCcccccccc
Confidence            36899999999999854322    35655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
3jr1_A	312	Crystal Structure Of Putative Fructosamine-3-Kinase		1e-22
3f7w_A	288	Crystal Structure Of Putative Fructosamine-3-Kinase		4e-18

>pdb|3JR1|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase (Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A Resolution Length = 312

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 14/225 (6%)
Query: 44  DAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG 103
           +  + FVK N     S F  EA  L  + +T +I  P  + +G    G S++++E     
Sbjct: 58  EVQTVFVKINERSYRSXFRAEADQLALLAKTNSINVPLVYGIGN-SQGHSFLLLE--ALN 114
Query: 104 SSRGNQS---VFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLG 160
            S+  QS   +F +K+A++H+     K +G D D  +G   Q N W ++W +F++E+R+G
Sbjct: 115 KSKNKQSSFTIFAEKIAQLHQIQGPDK-YGLDFDTWLGPIYQPNDWQTSWAKFFSENRIG 173
Query: 161 YQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGN-ISSDKNGEPVI 219
           +QL++  ++     I+     +++ +A      N +P +LHG+LW  N I  D   +  +
Sbjct: 174 WQLQICKEK---GLIFGNIDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVD--DKIFV 228
Query: 220 LDPACYYGHNEAEFGM-SWCAGFGGSFYNSYFEVMPKQPGFEKRR 263
            +PACY+G  E +    S    F  +FY  Y E+ P + G+ +R+
Sbjct: 229 CNPACYWGDRECDIAFSSLFEPFPTNFYQRYNEIYPLEEGYLERK 273

>pdb|3F7W|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase (Yp_290396.1) From Thermobifida Fusca Yx-Er1 At 1.85 A Resolution Length = 288

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 114/265 (43%), Gaps = 26/265 (9%)
Query: 43  TDAGSFFVKTNRSIGPSM---FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF 99
            D    FVK      P++   F  EALGL   +  R+  +P P   G        +  E+
Sbjct: 37  ADGTPLFVKALPDDAPALDGLFRAEALGLD--WLGRSFGSPVPQVAG---WDDRTLAXEW 91
Query: 100 I-EFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHR 158
           + E   +      FG +LA  H AG  S  FG   D  IG  P  N   S W EFYAE R
Sbjct: 92  VDERPPTPEAAERFGHQLAAXHLAGAES--FGATWDGYIGPLPXDNTPRSTWPEFYAEQR 149
Query: 159 LGYQLKLALDQ----YGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN 214
           +   L+ A D+     GD  + ++    + +LA    G    P  +HGDLW+GN+    +
Sbjct: 150 ILPYLRRAADRGALTPGDVRLVEKVLDALDHLA----GDPEPPARIHGDLWNGNVLWQDD 205
Query: 215 GEPVILDPACYYGHNEAEFGMSWCAGFGGSFY----NSYFEVMPKQPGFEKRRDXXXXXX 270
           G  V++DPA + GH EA+      A FG  +     ++Y EV P   G+  R        
Sbjct: 206 GA-VVIDPAAHGGHREADLAX--LALFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHP 262
Query: 271 XXXXXXXFGSGYRSSALSIIDDYLR 295
                  FG+ YR++ +      LR
Sbjct: 263 LLVHVCLFGAAYRTTLVDTARAALR 287

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	1e-88
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	3e-84
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	2e-17
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	2e-10
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	3e-10
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	3e-07
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	5e-07
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	2e-06
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	3e-06
3mes_A	424	Choline kinase; malaria, structural genomics, stru	8e-05
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	2e-04

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} Length = 312

 Score =  266 bits (680), Expect = 1e-88
 Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 12/294 (4%)

Query: 11  IREWILSE-GKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLG 69
           I + +  + G    I     +  G +N       +  + FVK N     SMF  EA  L 
Sbjct: 24  ISQVLAEQFGAYYFIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYRSMFRAEADQLA 83

Query: 70  AMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS-SRGNQSVFGKKLAEMHKAGKSSKG 128
            + +T +I  P  + +G    G S++++E +      + + ++F +K+A++H+     K 
Sbjct: 84  LLAKTNSINVPLVYGIGNSQ-GHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDK- 141

Query: 129 FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP 188
           +G D D  +G   Q N W ++W +F++E+R+G+QL++  ++      +     +++ +A 
Sbjct: 142 YGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLI---FGNIDLIVQIVAD 198

Query: 189 LFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFG-MSWCAGFGGSFYN 247
                N +P +LHG+LW  N     + +  + +PACY+G  E +    S    F  +FY 
Sbjct: 199 TLSKHNPKPSILHGNLWIENCIQV-DDKIFVCNPACYWGDRECDIAFSSLFEPFPTNFYQ 257

Query: 248 SYFEVMPKQPGFEKRRDLYMLYHYLNHYNLF---GSGYRSSALSIIDDYLRMLK 298
            Y E+ P + G+ +R+ +Y LY+ LN    +      Y S    +I+  L  + 
Sbjct: 258 RYNEIYPLEEGYLERKLIYQLYYLLNFSYRYYNKKQSYVSLTQKLINQILHKID 311

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A* Length = 339

 Score = 80.5 bits (198), Expect = 2e-17
 Identities = 39/298 (13%), Positives = 78/298 (26%), Gaps = 31/298 (10%)

Query: 1   MTVAALSDDPIREWILSE--GKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGP 58
           M    +    + E +             I   G      A +  +++ S+F+K       
Sbjct: 1   MLKQPIQAQQLIELLKVHYGIDIHTAQFI-QGGADTNAFAYQADSESKSYFIKLKYGYHD 59

Query: 59  SMFEGEALGLGAMYETRTIRAPRPFKVGALPT---GGSYIIMEFIEFGSSRGNQSV---- 111
            +       L      + I  P       L         I   FI    +   Q++    
Sbjct: 60  EINLSIIRLL-HDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH-APNGFTQNLTGKQ 117

Query: 112 ---FGKKLAEMHKAGKSSKGFGFD--VDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLA 166
               GK L ++H+                +      +  + +      ++ +L    K  
Sbjct: 118 WKQLGKVLRQIHETSVPISIQQQLRKEIYSPKWREIVRSFYNQIEFDNSDDKLTAAFKSF 177

Query: 167 LDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILD-PACY 225
            +Q        R     + L+   +    +  L H D+ +GN+         I+D     
Sbjct: 178 FNQNSA--AIHRLVDTSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGNEESIYIIDWDEPM 235

Query: 226 YGHNEAEFGMSWCAGFGG--------SFYNSYFEVMPKQ---PGFEKRRDLYMLYHYL 272
               E +                    FY  Y E+   +     +   R +  +  Y 
Sbjct: 236 LAPKERDLMFIGGGVGNVWNKPHEIQYFYEGYGEINVDKTILSYYRHERIVEDIAVYG 293

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis} Length = 346

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 47/305 (15%), Positives = 92/305 (30%), Gaps = 36/305 (11%)

Query: 23  HITKICPVGGGCINLASRYGTDAGSFFVK-TNRSIGPSMFEGEALGLGAMYETRTIRAPR 81
              KI  + G  + L  +  TD+G+  +K  +R    ++F   A         + +  P 
Sbjct: 33  QAEKIDVIQGNQMALVWKVHTDSGAVCLKRIHRPEKKALFSIFAQDY---LAKKGMNVPG 89

Query: 82  P--FKVGALPT---GGSYIIMEFIEFGSSRGNQSV-----FGKKLAEMHKAGKSSKG-FG 130
               K G+L +      +++ ++IE G               K LA+ H A    +   G
Sbjct: 90  ILPNKKGSLYSKHGSFLFVVYDWIE-GRPFELTVKQDLEFIMKGLADFHTASVGYQPPNG 148

Query: 131 FDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDS--TIYQRGHRLMKNL-- 186
             +   +G  P         +E +       +       Y        + G R+   L  
Sbjct: 149 VPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEIDGFIEDGLRIKDRLLQ 208

Query: 187 ---APLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-ACYYGHNEAEFGM------- 235
               P  E +   P L H D  +GN    +N +  ++D     +     +          
Sbjct: 209 STYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSFDLPIRDLRKMIIPLLD 268

Query: 236 ---SWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDD 292
               W         N+Y    P     +K+  +++   +                ++  +
Sbjct: 269 TTGVWDDETFNVMLNAYESRAPLTE-EQKQV-MFIDMLFPYELYDVIREKYVRKSALPKE 326

Query: 293 YLRML 297
            L   
Sbjct: 327 ELESA 331

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana} Length = 420

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 47/310 (15%), Positives = 92/310 (29%), Gaps = 44/310 (14%)

Query: 6   LSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEA 65
           +   P     +   K+     I  VG G +N        +GS  +K        + E   
Sbjct: 18  IKSTPALSSKIGADKSDDDLVIKEVGDGNLNFVFIVVGSSGSLVIKQALPYIRCIGESWP 77

Query: 66  LGLG-AMYETRTIRAPRPFKVGALPT------GGSYIIMEFIE-------FGSSRGNQ-- 109
           +    A +E  T+R         +P         + I M ++E        G   G +  
Sbjct: 78  MTKERAYFEATTLRKHGNLSPDHVPEVYHFDRTMALIGMRYLEPPHIILRKGLIAGIEYP 137

Query: 110 ---SVFGKKLAEMHKAGKSSKGFGFDVDNTIGST---PQINKWTSN--WIEFYAEHRLGY 161
                    +A+             +    +       ++ + T    + + Y       
Sbjct: 138 FLADHMSDYMAKTLFFTSLLYHDTTEHRRAVTEFCGNVELCRLTEQVVFSDPYRVSTFNR 197

Query: 162 QLKLALDQ-----YGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGE 216
                LD        DS +      L                L+HGDL +G++   ++  
Sbjct: 198 WTSPYLDDDAKAVREDSALKLEIAELKSMF------CERAQALIHGDLHTGSVMVTQD-S 250

Query: 217 PVILDPA-CYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDL--YMLYHYLN 273
             ++DP   +YG    + G      + G+   ++F           R++   ++L     
Sbjct: 251 TQVIDPEFSFYGPMGFDIGA-----YLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQ 305

Query: 274 HYNLFGSGYR 283
            +NLF   + 
Sbjct: 306 TWNLFNKRFI 315

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A* Length = 397

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 42/329 (12%), Positives = 94/329 (28%), Gaps = 51/329 (15%)

Query: 5   ALSDDPIREWILSEG--KATHITKICPVGGGCINLASRYGTDAG--SFFVKTNRSIGPSM 60
            L++       +  G   +        +G G +N            +  +K        +
Sbjct: 11  TLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVV 70

Query: 61  FEG----------EALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE------FGS 104
            E           E+  L    E      PR F      T  +  +ME +        G 
Sbjct: 71  GESWPLTIDRARIESSALIRQGEHVPHLVPRVF---YSDTEMAVTVMEDLSHLKIARKGL 127

Query: 105 SRGNQ-----SVFGKKLAEMHKAGKSSKGFGFDVDNTIG--STPQINKWTSNWI--EFYA 155
             G          G+ L +                  +   + P++   T   +  + + 
Sbjct: 128 IEGENYPHLSQHIGEFLGKTLFYSSDYALEPKVKKQLVKQFTNPELCDITERLVFTDPFF 187

Query: 156 EHRLG----YQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISS 211
           +H                + + ++     +L K+             L+HGDL +G+I +
Sbjct: 188 DHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFL------TSAETLIHGDLHTGSIFA 241

Query: 212 DKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYF--EVMPKQPGFEKRRDLYMLY 269
            ++   VI     +YG    + G      F  + + +    +   ++P +E    ++  +
Sbjct: 242 SEHETKVIDPEFAFYGPIGFDVGQ-----FIANLFLNALSRDGADREPLYEHVNQVWETF 296

Query: 270 H--YLNHYNLFGSGYRSSALSIIDDYLRM 296
              +   +        ++    + D L  
Sbjct: 297 EETFSEAWQKDSLDVYANIDGYLTDTLSH 325

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A* Length = 306

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 40/302 (13%), Positives = 82/302 (27%), Gaps = 55/302 (18%)

Query: 24  ITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSM-FEGEALGLGAMYETRTIRAPRP 82
           I  +  +G G  N A     D   +  +  +S   +     E   L  +     +  P+ 
Sbjct: 21  IQSVESLGEGFRNYAILVNGD---WVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQY 77

Query: 83  FKVGALPTGGSYIIMEFIEFGSSRGNQSV--------------FGKKLAEMHKAGKSSKG 128
             +G    G  ++    ++ G   G   +                + + E+         
Sbjct: 78  VYIGKRSDGNPFVGYRKVQ-GQILGEDGMAVLPDDAKDRLALQLAEFMNELSAF------ 130

Query: 129 FGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP 188
               V+  I +   +    +  +          Q+   LD+     +  R    M +   
Sbjct: 131 ---PVETAISAGVPVTNLKNKILLLSEAVED--QVFPLLDESLRDYLTLRFQSYMTHPVY 185

Query: 189 LFEGVNVEPCLLHGDLWSGNISSDKNGEPVIL------------DPACYYGHNEAEFGMS 236
                   P L+HGDL   +  ++ N     L            DP         ++   
Sbjct: 186 T----RYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDY-------DYVYL 234

Query: 237 WCAGFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLRM 296
                G  F          +   +       L+   +  +    G R+     I + L +
Sbjct: 235 L-EDCGELFTRQVMAY-RGEVDLDTHIRKVSLFVTFDQVSYLLEGLRARDQDWISEGLEL 292

Query: 297 LK 298
           L+
Sbjct: 293 LE 294

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 Length = 264

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 30/221 (13%)

Query: 42  GTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE 101
                  FVKT+ S   +  + EA  L  +  T  +       V     G  ++++  + 
Sbjct: 41  AQGRPVLFVKTDLSGALNELQDEAARLSWLATTG-VPCAAVLDVVT-EAGRDWLLLGEVP 98

Query: 102 -------FGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFY 154
                    +     S+    +  +H    ++  F     + I       +      +  
Sbjct: 99  GQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDL 158

Query: 155 AEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN 214
            E   G                    RL   +         +  + HGD    NI  +  
Sbjct: 159 DEEHQGLAPAELFA------------RLKARMPDG-----EDLVVTHGDACLPNIMVENG 201

Query: 215 GEPVILDPA-CYYGHNEAEFGM---SWCAGFGGSFYNSYFE 251
                +D           +  +         GG + + +  
Sbjct: 202 RFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLV 242

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum} Length = 424

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 34/271 (12%), Positives = 70/271 (25%), Gaps = 22/271 (8%)

Query: 26  KICPVGGGCIN--LASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPF 83
           ++  +  G  N         ++ S  +K  R +     +       +  E    R     
Sbjct: 74  EVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNI 133

Query: 84  KVGA--LPTGGSYIIMEFIEFG-------SSRGNQSVFGKKLAEMHKAGKSSKGFGFDVD 134
            +    +       I EFI+                   K +  +H        F    D
Sbjct: 134 NIAPNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFD 193

Query: 135 NTIGSTPQINKWTSNWIEFYAEHRLGYQLKL------ALDQYGDSTIYQRGHRLMKNLAP 188
                  +I  W        +++      +L       +DQ  +  +      + + L  
Sbjct: 194 KEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKILEEIDQLEELIMGGEKFSMERALEL 253

Query: 189 LFEGVNVEPCLLHGDLWSGNISSDKNGEPVI---LDPACYYGHNEAEFGMSWCAGFGGSF 245
                       H DL   N+   +N   +I        + G + A +   +   +    
Sbjct: 254 KLYSPAFSLVFAHNDLQENNLLQTQNNIRMIDYEYSAINFAGADIANYFCEYIYDYCSEK 313

Query: 246 YNSYFEVMPKQPGFEKRRDLYMLYHYLNHYN 276
              +       P  E R+    +  YL+   
Sbjct: 314 QPYFKFKYEDYPCEELRKL--FISVYLSQTL 342

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* Length = 263

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 22/227 (9%), Positives = 54/227 (23%), Gaps = 40/227 (17%)

Query: 29  PVGGGCINLAS-RYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYE-----TRTIRAPRP 82
               G       +   +  + ++K    +  S ++G    +    +        +  P+ 
Sbjct: 20  KDTEGMSPAKVYKLVGENENLYLK----MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKV 75

Query: 83  FKVGALPTGGSYIIMEFIEF----------GSSRGNQSVFGKKLAEMHKAGKSSKGFGFD 132
                   G S ++M   +            S      ++ + +   H    S   +   
Sbjct: 76  LHFERHD-GWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNS 134

Query: 133 VDNTIGSTPQINKWTSNWIEFYAEHRLG-YQLKLALDQYGDSTIYQRGHRLMKNLAPLFE 191
           +D+ +             +++   + L     +   +        +    L         
Sbjct: 135 LDSRLA-----------ELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEE-- 181

Query: 192 GVNVEPCLLHGDLWSGNISSDKNGEPVILD-PACYYGHNEAEFGMSW 237
               E    HGDL   NI          +D           +     
Sbjct: 182 ----ELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCV 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	100.0
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	100.0
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	100.0
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	99.97
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	99.96
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	99.96
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.95
3ats_A	357	Putative uncharacterized protein; hypothetical pro	99.95
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	99.95
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	99.94
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	99.94
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	99.94
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	99.94
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	99.92
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.92
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	99.91
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	99.91
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.91
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	99.88
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	99.88
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	99.87
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	99.87
3mes_A	424	Choline kinase; malaria, structural genomics, stru	99.87
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	99.86
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	99.82
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	99.8
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	99.74
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.1
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.8
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	98.79
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.69
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	98.68
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	98.67
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	98.66
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	98.64
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.61
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	98.59
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	98.55
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	98.55
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	98.51
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	98.5
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	98.47
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	98.46
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.45
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.44
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	98.44
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.44
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.44
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.43
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	98.43
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	98.41
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	98.41
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.39
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	98.38
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	98.37
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	98.35
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.33
3niz_A	311	Rhodanese family protein; structural genomics, str	98.33
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	98.32
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	98.32
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	98.32
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	98.31
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	98.31
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	98.31
3uqc_A	286	Probable conserved transmembrane protein; structur	98.31
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	98.3
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.3
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	98.3
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	98.3
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	98.3
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	98.29
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	98.28
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	98.28
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	98.28
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	98.28
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	98.27
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	98.27
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	98.27
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	98.27
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	98.26
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.26
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	98.26
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	98.24
3q4u_A	301	Activin receptor type-1; structural genomics conso	98.24
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	98.24
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	98.24
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	98.24
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	98.24
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	98.23
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	98.23
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	98.23
3o0g_A	292	Cell division protein kinase 5; kinase activator c	98.22
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	98.22
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.22
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	98.22
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	98.22
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	98.22
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	98.22
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	98.21
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.21
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.21
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	98.21
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	98.2
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	98.2
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	98.19
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	98.19
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	98.19
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	98.19
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	98.19
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	98.19
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	98.18
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	98.18
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.18
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	98.17
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.17
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	98.17
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.17
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	98.16
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.15
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	98.15
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	98.15
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	98.15
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	98.15
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	98.15
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	98.15
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	98.14
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	98.14
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	98.14
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	98.13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.13
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	98.13
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.13
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.12
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	98.12
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	98.12
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.12
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	98.12
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	98.11
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	98.11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.11
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	98.1
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	98.1
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	98.1
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	98.1
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	98.1
3an0_A	340	Dual specificity mitogen-activated protein kinase;	98.1
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	98.1
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	98.1
3bhy_A	283	Death-associated protein kinase 3; death associate	98.1
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	98.1
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	98.09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	98.09
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	98.09
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	98.09
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	98.08
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	98.08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	98.08
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	98.08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	98.08
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	98.07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	98.07
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	98.07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	98.07
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	98.06
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	98.06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	98.06
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	98.06
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	98.06
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	98.05
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	98.05
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	98.05
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	98.04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	98.04
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	98.04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	98.04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	98.04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	98.03
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	98.03
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	98.03
3soc_A	322	Activin receptor type-2A; structural genomics cons	98.03
2a19_B	284	Interferon-induced, double-stranded RNA-activated	98.03
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.03
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	98.02
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.02
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.02
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	98.01
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	98.01
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	98.01
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	98.01
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.01
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	98.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	98.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	98.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	98.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	97.99
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	97.99
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	97.99
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	97.99
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	97.99
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	97.99
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	97.99
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	97.98
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	97.98
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	97.98
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	97.98
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	97.98
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	97.97
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	97.97
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	97.96
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	97.95
3ork_A	311	Serine/threonine protein kinase; structural genomi	97.95
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	97.95
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	97.94
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	97.94
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	97.94
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	97.94
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	97.93
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	97.93
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	97.93
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	97.92
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	97.92
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	97.92
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	97.92
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.91
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	97.91
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.9
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	97.89
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	97.88
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	97.88
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	97.88
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	97.88
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	97.87
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	97.86
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	97.85
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	97.85
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	97.84
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	97.83
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.83
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	97.83
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	97.83
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	97.82
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	97.81
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	97.81
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	97.8
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	97.8
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	97.79
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	97.79
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	97.79
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	97.78
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	97.78
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	97.77
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	97.77
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	97.75
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.75
3rp9_A	458	Mitogen-activated protein kinase; structural genom	97.74
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	97.74
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	97.74
3aln_A	327	Dual specificity mitogen-activated protein kinase;	97.71
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	97.7
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	97.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.68
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	97.67
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	97.66
2dyl_A	318	Dual specificity mitogen-activated protein kinase	97.64
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	97.63
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	97.63
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	97.6
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	97.58
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	97.55
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	97.54
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	97.5
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	97.5
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	97.5
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	97.47
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	97.45
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	97.31
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.26
1cja_A	342	Protein (actin-fragmin kinase); transferase; HET:	86.5

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=100.00  E-value=1.8e-47  Score=335.49  Aligned_cols=282  Identities=26%  Similarity=0.481  Sum_probs=240.3

Q ss_pred             cchHHHHHHhc-CCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeec
Q 022304            8 DDPIREWILSE-GKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVG   86 (299)
Q Consensus         8 ~~~i~~~l~~~-~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~   86 (299)
                      .+.|.++|.+. +....+.+++++++|.+|.+|+|++++++||+|+++......++.|++.|++|+...+++||+|+..+
T Consensus        21 ~~~l~~~L~~~lg~~~~i~~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~  100 (312)
T 3jr1_A           21 WKSISQVLAEQFGAYYFIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIG  100 (312)
T ss_dssp             HHHHHHHHHHHHSSCCCCCEEEEECCSSSSEEEEEESSSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEE
T ss_pred             HHHHHHHHHHHhCCCcceeeeEEeCCccceeeeEEEECCCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEe
Confidence            57888999888 43346889999999999999999998889999998765456789999999999987679999999987


Q ss_pred             ccCCCceEEEEecccCCCCC-CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHH
Q 022304           87 ALPTGGSYIIMEFIEFGSSR-GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL  165 (299)
Q Consensus        87 ~~~~~~~~~v~e~l~G~~~~-~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                      .. .+..|++|+|++|.+.. ..+.++|+.||+||++..+ +.||++.++++|..|+.+.|..+|.+|+.+.++.++++.
T Consensus       101 ~~-~g~~~lvme~l~G~~~~~~~~~~lG~~LA~LH~~~~~-~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~  178 (312)
T 3jr1_A          101 NS-QGHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGP-DKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQI  178 (312)
T ss_dssp             EC-SSEEEEEEECCCCCCCCTTHHHHHHHHHHHHHHCCCC-SSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHH
T ss_pred             ec-CCceEEEEEeccCCCCCchhHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence            65 57899999999999764 5689999999999999863 459999999999999999999999999987778888776


Q ss_pred             HHhhcCC-hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhhhhh-hhcCCCh
Q 022304          166 ALDQYGD-STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCAGFGG  243 (299)
Q Consensus       166 ~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla~~-~~~~~~~  243 (299)
                      +.+.+.. +.    ++++++++...+.....+++|||||+|++|+++++++ ++|||+.+++|||++|++++ .++++++
T Consensus       179 a~~~g~~~~~----~~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~~~~g~~~~Dl~~~~~~~~~~~  253 (312)
T 3jr1_A          179 CKEKGLIFGN----IDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPACYWGDRECDIAFSSLFEPFPT  253 (312)
T ss_dssp             HHHHTCCCSC----HHHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCCCEEECTHHHHHHHTTSSCCCH
T ss_pred             HHHcCCChHH----HHHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCccccCChHHHHHHHHHhCCccH
Confidence            6554332 22    3344455554444334678999999999999998887 99999988899999999986 4567889


Q ss_pred             hhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHH
Q 022304          244 SFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGS---GYRSSALSIIDDYLRM  296 (299)
Q Consensus       244 ~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~  296 (299)
                      +|+++|.+..|++++|.+|..+|+++..|+++..||.   +|..+++++|+++++.
T Consensus       254 ~~~~~Y~~~~pl~~~~~~R~~ly~l~~~l~~~~~fG~~~~~Y~~~~~~~~~~~~~~  309 (312)
T 3jr1_A          254 NFYQRYNEIYPLEEGYLERKLIYQLYYLLNFSYRYYNKKQSYVSLTQKLINQILHK  309 (312)
T ss_dssp             HHHHHHHHHSCCCTTHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999   9999999999999853

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=100.00  E-value=9.8e-47  Score=328.79  Aligned_cols=277  Identities=28%  Similarity=0.400  Sum_probs=237.0

Q ss_pred             chHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCcccee
Q 022304            9 DPIREWILSEGKATHITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFK   84 (299)
Q Consensus         9 ~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~   84 (299)
                      +.|..-+.+. .|.++.+++++++|.+|.||+|++++| +||+|+++..   ....+++|++.|+.|++..++|||+++.
T Consensus         3 ~~v~a~~~~l-~G~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~   81 (288)
T 3f7w_A            3 NSVAARVTEL-TGREVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAG   81 (288)
T ss_dssp             HHHHHHHHHH-HCCCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEE
T ss_pred             HHHHHHHHHh-cCCCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEe
Confidence            4567777777 678999999999999999999999887 7999998753   2356899999999998877899999998


Q ss_pred             ecccCCCceEEEEecccCCCCC-CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHH
Q 022304           85 VGALPTGGSYIIMEFIEFGSSR-GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQL  163 (299)
Q Consensus        85 ~~~~~~~~~~~v~e~l~G~~~~-~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  163 (299)
                      .+.     .+++|||+++.... ..++++|+.|+++|....+  .||+...+.+|..++.+.|..+|..++.+.++..+.
T Consensus        82 ~~~-----~~lv~e~l~~~~~~~~~~~~lg~~La~lH~~~~~--~fg~~~~~~~g~~~~~~~~~~~w~~~~~~~rl~~~~  154 (288)
T 3f7w_A           82 WDD-----RTLAMEWVDERPPTPEAAERFGHQLAAMHLAGAE--SFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYL  154 (288)
T ss_dssp             EET-----TEEEEECCCCCCCCHHHHHHHHHHHHHHHHTCCS--SBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHH
T ss_pred             ccC-----ceEEEEeecccCCChHHHHHHHHHHHhhhhcccc--ccccccccccccccccCcccccchhhhHHhhHHHHH
Confidence            864     49999999998764 4578999999999998874  589888889999999999999999999877777776


Q ss_pred             HHHHhhc-CChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccccccCCchhhhhhh-hhc-C
Q 022304          164 KLALDQY-GDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMS-WCA-G  240 (299)
Q Consensus       164 ~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~~~~g~~~~Dla~~-~~~-~  240 (299)
                      +.+.... .+......++++.+.+..++.. ..+++|||||||++||++++++ +.|||+.+++||+++||+++ +++ +
T Consensus       155 ~~~~~~~~~~~~~~~~~e~l~~~L~~~~~~-~~~p~LvHGDlw~gNvl~~~~g-~~~iDp~~~~g~~e~Dla~~~~fg~~  232 (288)
T 3f7w_A          155 RRAADRGALTPGDVRLVEKVLDALDHLAGD-PEPPARIHGDLWNGNVLWQDDG-AVVIDPAAHGGHREADLAMLALFGLP  232 (288)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHTHHHHTCS-CCCCEEECSCCSGGGEEEETTE-EEECSCCCEEECHHHHHHHHHHHCCT
T ss_pred             HHHHhccCcchhhhHHHHHHHHHHHHhccc-CCCCeeeecCCCCCcEEEcCCC-eEEEecccccCCHHHHHHHHHhcCCC
Confidence            6555543 3444556667777777766654 4678999999999999999877 78999989999999999987 454 7


Q ss_pred             CChhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 022304          241 FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGSGYRSSALSIIDDYLR  295 (299)
Q Consensus       241 ~~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  295 (299)
                      ++++|+++|.+..|++++|.+|..+|+|+..|+|+..||.+|..++.++|+++++
T Consensus       233 ~~~~f~~~Y~~~~pl~~~~~~R~~ly~ly~~l~h~~~fg~~y~~~~~~~~~~~l~  287 (288)
T 3f7w_A          233 YLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALR  287 (288)
T ss_dssp             THHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhh
Confidence            8899999999999999999999999999999999999999999999999999985

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=99.96  E-value=4.7e-28  Score=213.67  Aligned_cols=243  Identities=15%  Similarity=0.197  Sum_probs=168.0

Q ss_pred             ccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccc
Q 022304            4 AALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRP   82 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~   82 (299)
                      ..++.+++..+|.+.+.+ ++.+++++++|.+|.+|+|++++|+||+|+++. .....+..|.+++++|+++ +++||++
T Consensus         5 ~~~~~~~l~~~l~~~~~~-~~~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~~~l~~e~~~l~~L~~~-g~~vP~~   82 (322)
T 2ppq_A            5 TDITEDELRNFLTQYDVG-SLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKNDLPFFLGLMQHLAAK-GLSCPLP   82 (322)
T ss_dssp             CCCCHHHHHHHHTTBCCC-CEEEEEEECC---EEEEEEEESSCCEEEEEECC---CCHHHHHHHHHHHHHHT-TCCCCCB
T ss_pred             ccCCHHHHHHHHHhCCCC-cceEeeccCCCcccceEEEEeCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHC-CCCCCcc
Confidence            468999999999877653 788999999999999999999989999999976 3456788999999999987 6999999


Q ss_pred             eeecccC-----CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHH
Q 022304           83 FKVGALP-----TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEF  153 (299)
Q Consensus        83 ~~~~~~~-----~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (299)
                      +......     .|..+++++|++|.+..    ....++|+.|++||+....   |+.+.+...+        ...|...
T Consensus        83 ~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~---~~~~~~~~~~--------~~~w~~~  151 (322)
T 2ppq_A           83 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEG---FEIKRPNALS--------VDGWKVL  151 (322)
T ss_dssp             CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTT---CCCCCBCTTS--------HHHHHHH
T ss_pred             cCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhcc---CCCcccCccC--------hHHHHHH
Confidence            9765321     46789999999998753    3578999999999998752   3322111000        0134332


Q ss_pred             HHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhh
Q 022304          154 YAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAE  232 (299)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~D  232 (299)
                      +...     .... .. ..+.+.+.+.+.++.+...... ..+.++||||+|++|||+++++.++||||+ +++|++.+|
T Consensus       152 ~~~~-----~~~~-~~-~~~~l~~~l~~~~~~l~~~~~~-~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~g~~~~D  223 (322)
T 2ppq_A          152 WDKS-----EERA-DE-VEKGLREEIRPEIDYLAAHWPK-DLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDLLAYD  223 (322)
T ss_dssp             HHHH-----GGGG-GG-TSTTHHHHHHHHHHHHHHHCCC-SSCEEEECSCCCGGGEEEETTEEEEECCCTTCEEEEHHHH
T ss_pred             HHHH-----HHHH-Hh-hhhhhHHHHHHHHHHHHhhCcc-cCCcccCCCCCCccCEEEeCCceEEEecchhccCchhHHH
Confidence            2210     0000 00 1111222344444444433332 357899999999999999877656899995 789999999


Q ss_pred             hhhhh---h----cCCC----hhhHHHhhhhCCCCCCHHHHHHHHH
Q 022304          233 FGMSW---C----AGFG----GSFYNSYFEVMPKQPGFEKRRDLYM  267 (299)
Q Consensus       233 la~~~---~----~~~~----~~f~~~Y~~~~~l~~~~~~r~~~~~  267 (299)
                      ++.+.   +    ..++    ++|+++|.+.+|+++....++..+.
T Consensus       224 la~~l~~~~~~~~~~~~~~~~~~~l~~Y~~~~~l~~~e~~~l~~~~  269 (322)
T 2ppq_A          224 VSICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLSEAELEALPLLS  269 (322)
T ss_dssp             HHHHHHHHSBCTTSCBCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99763   1    1122    4799999999999876656555553

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=99.96  E-value=1.3e-28  Score=216.12  Aligned_cols=268  Identities=13%  Similarity=0.139  Sum_probs=179.3

Q ss_pred             cCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccce
Q 022304            5 ALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPF   83 (299)
Q Consensus         5 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~   83 (299)
                      +++.+.+.+++.++.++..+.+++++++|..|.+|++   +++||+|+++.. ....++.|+++++.|+.+.+++||+++
T Consensus         2 ~~~~~~l~~~l~~~~p~~~~~~v~~l~~G~~n~v~~v---g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~   78 (306)
T 3tdw_A            2 KQNKLHYTTMIMTQFPDISIQSVESLGEGFRNYAILV---NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYV   78 (306)
T ss_dssp             --CHHHHHHHHHHHCTTSCCSCEEEEEECSSEEEEEE---TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEE
T ss_pred             CCCHHHHHHHHHHHCCCCCceeeeecCCCcceeEEEE---CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeE
Confidence            4788899999998867778889999999999999999   479999997642 235688999999999987689999999


Q ss_pred             eecccCCCceEEEEecccCCCCC-------------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCH
Q 022304           84 KVGALPTGGSYIIMEFIEFGSSR-------------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNW  150 (299)
Q Consensus        84 ~~~~~~~~~~~~v~e~l~G~~~~-------------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  150 (299)
                      ..+....|..|++|+|++|.++.             ....++|+.|++||+.+.+.  ++.     .| .|.     ..|
T Consensus        79 ~~~~~~~g~~~~v~e~i~G~~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~--~~~-----~g-~p~-----~~w  145 (306)
T 3tdw_A           79 YIGKRSDGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVET--AIS-----AG-VPV-----TNL  145 (306)
T ss_dssp             EEEECTTSCEEEEEECCCSEECHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHH--HHH-----TT-CCB-----CCH
T ss_pred             eecccCCCceEEEEeccCCeECchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCccc--ccc-----cC-CCh-----HHH
Confidence            88753367889999999998762             12578999999999988531  110     00 111     145


Q ss_pred             HHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhc--cccCCCCCcceeccCCCCCCeeecC---CCC-eEEEccc-
Q 022304          151 IEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAP--LFEGVNVEPCLLHGDLWSGNISSDK---NGE-PVILDPA-  223 (299)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~liHgDl~~~Nvl~~~---~~~-~~iID~~-  223 (299)
                      ...+..  ....++.......+......+.+..+.+..  .+.  +.++++||||+|++|||+++   ++. ++||||+ 
T Consensus       146 ~~~~~~--~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~--~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~  221 (306)
T 3tdw_A          146 KNKILL--LSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYT--RYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGD  221 (306)
T ss_dssp             HHHHHH--HHHHHHHHTGGGSCHHHHHHHHHHHHHHHHCHHHH--CCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTT
T ss_pred             HHHHHH--HHHHHHHhcccccchhhHHHHHHHHHHHHhCcccc--cCCCeeEeCCCCcccEEEecCCCCCceEEEEehhh
Confidence            433321  111111111111111112222222222111  111  25789999999999999987   233 5899995 


Q ss_pred             cccCCchhhhhhhhh-c--CCChhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhh----C-cccHHHHHHHHHHHHH
Q 022304          224 CYYGHNEAEFGMSWC-A--GFGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLF----G-SGYRSSALSIIDDYLR  295 (299)
Q Consensus       224 ~~~g~~~~Dla~~~~-~--~~~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~----~-~~~~~~~~~~~~~~~~  295 (299)
                      +.+|||++|++.++. .  .+.+.|++ |.+..+.+. ..+|+.+|.++..+. +..|    | .++.+.+.++++++..
T Consensus       222 a~~gd~~~Dla~~~~~~~~~~~~~~~~-Y~~~~~~~~-~~~r~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~~  298 (306)
T 3tdw_A          222 AAISDPDYDYVYLLEDCGELFTRQVMA-YRGEVDLDT-HIRKVSLFVTFDQVS-YLLEGLRARDQDWISEGLELLEEDKA  298 (306)
T ss_dssp             CEEECGGGGGHHHHHHTCHHHHHHHHH-HTTCSCHHH-HHHHHHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhcCHHHHHHHHH-hcccccCCC-HHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhh
Confidence            789999999997632 1  23357899 997632222 278999998876543 3333    3 3678888888888754

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.95  E-value=2.9e-26  Score=205.33  Aligned_cols=252  Identities=15%  Similarity=0.198  Sum_probs=170.3

Q ss_pred             ccCCcchHHHHHHhcCCC-cceeeeeeeCCccccceEEEEeCCccEEEEecC--CC----CcchHHHHHHHHHHHHhcCC
Q 022304            4 AALSDDPIREWILSEGKA-THITKICPVGGGCINLASRYGTDAGSFFVKTNR--SI----GPSMFEGEALGLGAMYETRT   76 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~--~~----~~~~~~~E~~~l~~L~~~~~   76 (299)
                      ..++.+.+..||.++..+ ....+++++++|.+|.+|++++.+++||+|+.+  ..    ....+++|+++++.|+.. +
T Consensus        19 ~~ld~~~l~~~l~~~~~~~~~~~~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~-~   97 (359)
T 3dxp_A           19 QRFDTEALEAWMRQHVEGFAGPLSVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGT-D   97 (359)
T ss_dssp             -CCCHHHHHHHHHHHSTTCCCCCEEEECCC-CCSCEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTS-S
T ss_pred             cCCCHHHHHHHHHHhCCCCCCCceEEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcC-C
Confidence            357889999999988433 457789999999999999999988899999987  42    235688999999999885 7


Q ss_pred             CCCccceeecccC--CCceEEEEecccCCCCC-------------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccc
Q 022304           77 IRAPRPFKVGALP--TGGSYIIMEFIEFGSSR-------------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTP  141 (299)
Q Consensus        77 ~~vP~~~~~~~~~--~~~~~~v~e~l~G~~~~-------------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~  141 (299)
                      ++||+++..+...  .|..|++|+|++|..+.             ....++++.|++||++..+.  +++...   +.  
T Consensus        98 vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~--~~~~~~---~~--  170 (359)
T 3dxp_A           98 VPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQA--IGLGDY---GK--  170 (359)
T ss_dssp             SCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTT--TTCTTS---SC--
T ss_pred             CCCCcEEEECCCCCccCCeEEEEEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchh--cccccc---CC--
Confidence            8999999886542  36799999999998762             12678999999999998642  222110   10  


Q ss_pred             cCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCC-CCcceeccCCCCCCeeecCCCC--eE
Q 022304          142 QINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVN-VEPCLLHGDLWSGNISSDKNGE--PV  218 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~liHgDl~~~Nvl~~~~~~--~~  218 (299)
                          . ..+..    .++..+.+.......  .....++++.+.+...+.... .++++||||+|++|||+++++.  .+
T Consensus       171 ----~-~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~  239 (359)
T 3dxp_A          171 ----P-GNYFQ----RQIERWTKQYKLSET--ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLA  239 (359)
T ss_dssp             ----C-SCHHH----HHHHHHHHHHHHHCC--SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEE
T ss_pred             ----C-CCchH----HHHHHHHHHHHhcCC--cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEE
Confidence                0 12211    112222222211111  112345566666665554311 1579999999999999987653  58


Q ss_pred             EEccc-cccCCchhhhhhhh-hc------------------CCC--hhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 022304          219 ILDPA-CYYGHNEAEFGMSW-CA------------------GFG--GSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYN  276 (299)
Q Consensus       219 iID~~-~~~g~~~~Dla~~~-~~------------------~~~--~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~  276 (299)
                      ||||+ +.+|+|.+||+.+. +.                  +++  ++|+++|++..+.+.  ..++.+|..+..+.++.
T Consensus       240 viDwe~a~~g~p~~DLa~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~Y~~~~g~~~--~~~~~~~~~~~~~r~a~  317 (359)
T 3dxp_A          240 VLDWELSTLGHPMGDFGYHCMSWHIAPGQFRGIAGLDHAALGIPDEASYRKLYEQRTGRPI--TGDWNFYLAFSMFRIAG  317 (359)
T ss_dssp             ECCCTTCEEECHHHHHHHHGGGGTSCSSSSCCCTTSCHHHHTCCCHHHHHHHHHHHHSSCC--CSCHHHHHHHHHHHHHH
T ss_pred             EECccccccCCHHHHHHHHHHHhccCccccccccCCCccCCCCCCHHHHHHHHHHHhCCCC--cccchHHHHHHHHHHHH
Confidence            99995 78999999999752 11                  111  579999999877652  14566776666554443

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=99.95  E-value=6.8e-28  Score=215.71  Aligned_cols=255  Identities=15%  Similarity=0.141  Sum_probs=164.7

Q ss_pred             cchHHHHHHhcCCC---cceeeeeee-CCccccceEEEEeC--------CccEEEEecCCCC------cchHHHHHHHHH
Q 022304            8 DDPIREWILSEGKA---THITKICPV-GGGCINLASRYGTD--------AGSFFVKTNRSIG------PSMFEGEALGLG   69 (299)
Q Consensus         8 ~~~i~~~l~~~~~~---~~~~~~~~~-~~G~~n~~y~v~~~--------~g~~vlK~~~~~~------~~~~~~E~~~l~   69 (299)
                      .+.+..||.++..+   .++.+++++ ++|.+|.+|++++.        +++||+|+++...      ...++.|+++++
T Consensus         3 ~~~l~~~l~~~~~~~~~~~v~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~   82 (357)
T 3ats_A            3 PAVISRWLSSVLPGGAAPEVTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIR   82 (357)
T ss_dssp             HHHHHHHHHHHSCTTCCCEEEEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcCCCceEEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHH
Confidence            46789999988433   257788999 99999999999876        4589999987532      356899999999


Q ss_pred             HHHhcCCCCCccceeecccC--CCceEEEEecccCCCCCC---------------------cHHHHHHHHHHHHhcCCCC
Q 022304           70 AMYETRTIRAPRPFKVGALP--TGGSYIIMEFIEFGSSRG---------------------NQSVFGKKLAEMHKAGKSS  126 (299)
Q Consensus        70 ~L~~~~~~~vP~~~~~~~~~--~~~~~~v~e~l~G~~~~~---------------------~~~~lg~~La~lH~~~~~~  126 (299)
                      .|++..+++||+++..+...  .|..|++|+|++|.++..                     ...++|+.|++||+...+.
T Consensus        83 ~L~~~~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~La~LH~~~~~~  162 (357)
T 3ats_A           83 LVGELTDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQRQLQDATVAALATLHSIPNAQ  162 (357)
T ss_dssp             HHHHHCCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCCBTTBGGGSCSTTTTSCHHHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHhhcCCCCCCcEEEEccCCCccCCceEEEEecCCCChhhcCcccccccccCCCCHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99987579999999876542  267899999999976431                     1578999999999987521


Q ss_pred             CCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCC--CCcceeccCC
Q 022304          127 KGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVN--VEPCLLHGDL  204 (299)
Q Consensus       127 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~liHgDl  204 (299)
                        +++..   .+. +.  .. ..+..... .+..............   ...++++.+.+...+....  .++++||||+
T Consensus       163 --~~l~~---~~~-~~--~~-~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~p~~~~~~~~~l~HgDl  229 (357)
T 3ats_A          163 --NTFSF---LTQ-GR--TS-DTTLHRHF-NWVRSWYDFAVEGIGR---SPLLERTFEWLQSHWPDDAAAREPVLLWGDA  229 (357)
T ss_dssp             --HHTGG---GC---------CCHHHHHH-HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHTCCHHHHHSCCEEECSSC
T ss_pred             --CChhh---ccC-CC--CC-CchHHHHH-HHHHHHHHhhccCCCC---ChHHHHHHHHHHHhCCCcccCCCceEEeCCC
Confidence              12110   000 00  00 01100000 0011111111000011   1223333444433322100  2689999999


Q ss_pred             CCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh--------------cCC-----ChhhHHHhhhhCCCCCCHHHHHH
Q 022304          205 WSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC--------------AGF-----GGSFYNSYFEVMPKQPGFEKRRD  264 (299)
Q Consensus       205 ~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~--------------~~~-----~~~f~~~Y~~~~~l~~~~~~r~~  264 (299)
                      |++|||+++++.++||||+ +.+|||.+|++.+..              .++     .++|+++|.+..+++.   +++.
T Consensus       230 ~~~Nil~~~~~~~~vIDwe~a~~g~p~~Dla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~---~~~~  306 (357)
T 3ats_A          230 RVGNVLYRDFQPVAVLDWEMVALGPRELDVAWMIFAHRVFQELAGLATLPGLPEVMREDDVRATYQALTGVEL---GDLH  306 (357)
T ss_dssp             SGGGEEEETTEEEEECCGGGCEEECHHHHHHHHHHHHHHHHHHHHHTTCCCCTTSSCHHHHHHHHHHHHCCCC---CCSH
T ss_pred             CCCeEEEeCCcEEEEEcccccccCCcHHHHHHHHhhcccccccccccCCCCCCCcccHHHHHHHHHHHhCCCc---hhch
Confidence            9999999865457999995 789999999997521              133     3489999999887764   4567


Q ss_pred             HHHHHHHHHHHHhh
Q 022304          265 LYMLYHYLNHYNLF  278 (299)
Q Consensus       265 ~~~l~~~l~~~~~~  278 (299)
                      +|.++..+.++..+
T Consensus       307 ~~~~~~~~r~~~~~  320 (357)
T 3ats_A          307 WFYVYSGVMWACVF  320 (357)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77776666555444

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=99.95  E-value=4.3e-26  Score=202.76  Aligned_cols=272  Identities=16%  Similarity=0.186  Sum_probs=175.0

Q ss_pred             CccccCCcchHHHHHHhcCCCcceeeeeeeCCcc--ccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCC
Q 022304            1 MTVAALSDDPIREWILSEGKATHITKICPVGGGC--INLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIR   78 (299)
Q Consensus         1 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~--~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~   78 (299)
                      ||-..++.+++..++.+. +|..+.+++++.+|.  .|.+|+|++++|+||||+++...   ...|.+++++|++. +++
T Consensus         1 ~~kp~l~~~~l~~~l~~~-ygl~~~~~~~l~~G~g~~N~vy~v~~~~g~~vLK~~~~~~---~~~E~~~l~~L~~~-g~~   75 (339)
T 3i1a_A            1 MLKQPIQAQQLIELLKVH-YGIDIHTAQFIQGGADTNAFAYQADSESKSYFIKLKYGYH---DEINLSIIRLLHDS-GIK   75 (339)
T ss_dssp             --CCSSCTTHHHHHHHHH-HCCCCSEEEEETTTSCSSCEEEEEECSSCEEEEEEEECSS---CCHHHHHHHHHHHT-TCC
T ss_pred             CCCCCCCHHHHHHHHHHH-cCCCcceeEEeeccCccccceEEEEeCCCCEEEEEecCcc---chHHHHHHHHHHhc-CCc
Confidence            566789999999999877 444566777775554  79999999988899999987643   36899999999987 799


Q ss_pred             -CccceeecccC-----CCceEEEEecccCCCCC------CcHHHHHHHHHHHHhcCCCCC-CCCCCCCCcccccccCCC
Q 022304           79 -APRPFKVGALP-----TGGSYIIMEFIEFGSSR------GNQSVFGKKLAEMHKAGKSSK-GFGFDVDNTIGSTPQINK  145 (299)
Q Consensus        79 -vP~~~~~~~~~-----~~~~~~v~e~l~G~~~~------~~~~~lg~~La~lH~~~~~~~-~~~~~~~~~~g~~~~~~~  145 (299)
                       ||+|+......     .+..+++|+|++|....      ..+.++|+.||+||+...+.. .++.+.          ..
T Consensus        76 ~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~~lg~~La~LH~~~~~~~~~~~~~~----------~~  145 (339)
T 3i1a_A           76 EIIFPIHTLEAKLFQQLKHFKIIAYPFIHAPNGFTQNLTGKQWKQLGKVLRQIHETSVPISIQQQLRK----------EI  145 (339)
T ss_dssp             SSCCCCCCTTSCSSEECSSEEEEEEECCCCCBTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTSEE----------CC
T ss_pred             ccccceecCCCCEEEEECCEEEEEEeccCCCcCcccCCCHHHHHHHHHHHHHHhCcCCCCCCccCccc----------cc
Confidence             99999864321     46789999999998652      347899999999999986311 011111          01


Q ss_pred             CCCCHHHHHHH--hhhH---------HHHHHHHhhcCChHHHHHHHHHHH---HHhccccCCCCCcceeccCCCCCCeee
Q 022304          146 WTSNWIEFYAE--HRLG---------YQLKLALDQYGDSTIYQRGHRLMK---NLAPLFEGVNVEPCLLHGDLWSGNISS  211 (299)
Q Consensus       146 ~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~liHgDl~~~Nvl~  211 (299)
                      +...|...+..  ..+.         .........  .   ...+..+++   ++...+...+.+.++||||+|++||++
T Consensus       146 ~~~~w~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~--~---~~~l~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~N~l~  220 (339)
T 3i1a_A          146 YSPKWREIVRSFYNQIEFDNSDDKLTAAFKSFFNQ--N---SAAIHRLVDTSEKLSKKIQPDLDKYVLCHSDIHAGNVLV  220 (339)
T ss_dssp             CCCHHHHHHHHHGGGGSCCTTCCHHHHHHHHHHHH--T---HHHHHHHHHHHHHHHHHCCCCGGGCEEECSCCCGGGEEE
T ss_pred             cCcchHHHHHHHHHhhhccccCCcHHHHHHHHHHH--h---HHHHHHHHHHHHHHHHHHhhCCCCceeEeCCCCcCCEEE
Confidence            11123221111  0000         000000000  0   111122222   222223322357899999999999999


Q ss_pred             cCCCCeEEEccc-cccCCchhhhhhhhh--cCCC------hhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhhCc--
Q 022304          212 DKNGEPVILDPA-CYYGHNEAEFGMSWC--AGFG------GSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLFGS--  280 (299)
Q Consensus       212 ~~~~~~~iID~~-~~~g~~~~Dla~~~~--~~~~------~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~~~--  280 (299)
                      ++++.++||||+ +.+|+|++|++++..  ....      +.|+++|.+. ..  + .+++.+|++++.+..+..|+.  
T Consensus       221 ~~~~~~~~iD~e~~~~~~~~~Dla~~~~~~~~~~~~~~~~~~fl~~Y~~~-~~--d-~~~l~~y~~~r~l~~~~~~~~~~  296 (339)
T 3i1a_A          221 GNEESIYIIDWDEPMLAPKERDLMFIGGGVGNVWNKPHEIQYFYEGYGEI-NV--D-KTILSYYRHERIVEDIAVYGQDL  296 (339)
T ss_dssp             CGGGCEEECCCSSCEEECTHHHHTTTTCCTTSCSCCHHHHHHHHHHHCCC-CC--C-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCeEEEEECCCCeeCCHHHHHHHHHhhhhhccCCHHHHHHHHHHhCCC-CC--C-HHHhHHHHHHHHHHHHHHHHHHH
Confidence            876678999995 789999999998642  1111      3699999976 22  2 367999999999877764431  


Q ss_pred             ----ccHHHHHHHHHHHHHH
Q 022304          281 ----GYRSSALSIIDDYLRM  296 (299)
Q Consensus       281 ----~~~~~~~~~~~~~~~~  296 (299)
                          .-.++...+++.+...
T Consensus       297 ~~~~~~~~~~~~~~~~l~~~  316 (339)
T 3i1a_A          297 LSRNQNNQSRLESFKYFKEM  316 (339)
T ss_dssp             HSCSSCHHHHHHHHHHHHHT
T ss_pred             hccCCCcHHHHHHHHHHHHH
Confidence                2344444555544443

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=99.94  E-value=3.9e-26  Score=200.00  Aligned_cols=263  Identities=17%  Similarity=0.163  Sum_probs=179.0

Q ss_pred             ccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccc
Q 022304            4 AALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRP   82 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~   82 (299)
                      .+++.+.+.++|.+..++..+.+++++++|.+|.+|+++   ++||+|+++.. ....+++|+++++.|+...+++||++
T Consensus         2 ~~~~~~~l~~~l~~~~p~~~~~~i~~~~~G~~n~v~~v~---~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~   78 (304)
T 3sg8_A            2 RTYTFDQVEKAIEQLYPDFTINTIEISGEGNDCIAYEIN---RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEV   78 (304)
T ss_dssp             CCCCHHHHHHHHHHHCTTCCCCCCCEEEECSSEEEEEST---TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCE
T ss_pred             CcCCHHHHHHHHHHhCCCccceeeEecCCCCcceEEEEC---CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCce
Confidence            478999999999988667777889999999999999985   68999998753 23568899999999977778999999


Q ss_pred             eeecccC--CCceEEEEecccCCCCC-------------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCC
Q 022304           83 FKVGALP--TGGSYIIMEFIEFGSSR-------------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWT  147 (299)
Q Consensus        83 ~~~~~~~--~~~~~~v~e~l~G~~~~-------------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~  147 (299)
                      +..+...  .+..|++|+|++|.++.             ..+.++|+.|++||+.+.+    +++..          .+.
T Consensus        79 ~~~~~~~~~~~~~~~vm~~i~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~----~~~~~----------~~~  144 (304)
T 3sg8_A           79 VFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINIS----GFKSN----------LVL  144 (304)
T ss_dssp             EEECCCCSSCSCSCEEEECCCCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCT----TSCGG----------GBC
T ss_pred             EeecCCCCCCCcceEEEcccCCeECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCC----CCCcc----------chh
Confidence            9876542  24679999999998763             1257899999999998863    21110          112


Q ss_pred             CCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHH-HhccccCCCCCcceeccCCCCCCeeecC--CCCeEEEccc-
Q 022304          148 SNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKN-LAPLFEGVNVEPCLLHGDLWSGNISSDK--NGEPVILDPA-  223 (299)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~liHgDl~~~Nvl~~~--~~~~~iID~~-  223 (299)
                      ..|..+....   ..++.......+....+.+.++.++ +...... ..++++||||++++||++++  ++..+||||+ 
T Consensus       145 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~  220 (304)
T 3sg8_A          145 DFREKINEDN---KKIKKLLSRELKGPQMKKVDDFYRDILENEIYF-KYYPCLIHNDFSSDHILFDTEKNTICGIIDFGD  220 (304)
T ss_dssp             CHHHHHHHHH---HHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGT-CCCCEEECSCCCGGGEEEETTTTEEEEECCCTT
T ss_pred             hHHHHHHHHH---HHHHHHhcccCCcccHHHHHHHHHHHHhccccc-cCCceeEeCCCCcccEEEeCCCCCEEEEEeCCC
Confidence            3444433211   1122222211222223444445444 3322222 46789999999999999987  4446899995 


Q ss_pred             cccCCchhhhhhhhh--cCCC----hhhHHHhhhhCCCC-CCHHHHHHHHHHHHHHHHHHhh----C-cccHHHHHHHHH
Q 022304          224 CYYGHNEAEFGMSWC--AGFG----GSFYNSYFEVMPKQ-PGFEKRRDLYMLYHYLNHYNLF----G-SGYRSSALSIID  291 (299)
Q Consensus       224 ~~~g~~~~Dla~~~~--~~~~----~~f~~~Y~~~~~l~-~~~~~r~~~~~l~~~l~~~~~~----~-~~~~~~~~~~~~  291 (299)
                      +.+|||++|++.+..  ..++    +.|+++|..   .+ +++..|..+|..+..+. ...+    | ..|.......++
T Consensus       221 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~---~~~~~~~~r~~~~~~~~~l~-~~~~~~~~g~~~~~~~g~~~~~  296 (304)
T 3sg8_A          221 AAISDPDNDFISLMEDDEEYGMEFVSKILNHYKH---KDIPTVLEKYRMKEKYWSFE-KIIYGKEYGYMDWYEEGLNEIR  296 (304)
T ss_dssp             CEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTC---SCHHHHHHHHHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CccCChHHHHHHHHhhccccCHHHHHHHHHHcCC---CCcHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence            689999999998642  2244    467888843   23 46788998887766553 3333    2 356665555543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=99.94  E-value=1.5e-26  Score=205.41  Aligned_cols=253  Identities=16%  Similarity=0.156  Sum_probs=160.8

Q ss_pred             CCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceee
Q 022304            6 LSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKV   85 (299)
Q Consensus         6 ~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~   85 (299)
                      ++.+++.+++.+. ++..+.+++++++|..|.+|++++++|+||+|+.+.. ...+..|.+++++|++. +++||+++..
T Consensus        17 ~~~~~l~~~l~~~-~~~~~~~~~~l~gG~~n~~~~v~~~~~~~vlk~~~~~-~~~~~~e~~~l~~L~~~-g~~vp~~~~~   93 (346)
T 2q83_A           17 KKLTELAENVLQG-WDVQAEKIDVIQGNQMALVWKVHTDSGAVCLKRIHRP-EKKALFSIFAQDYLAKK-GMNVPGILPN   93 (346)
T ss_dssp             HHHHHHHHHHGGG-SCCCCCEEEECC----CEEEEEEETTEEEEEEEECSC-HHHHHHHHHHHHHHHHH-TCSSCCBCCC
T ss_pred             hHHHHHHHHHHHH-cCCceEEeeeccccccCcEEEEEeCCCCEEEEecCCC-HHHHHHHHHHHHHHHHc-CCCCCceeec
Confidence            3445677777666 5667889999988889999999999889999999763 34566789999999987 6899999985


Q ss_pred             cccC-----CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q 022304           86 GALP-----TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE  156 (299)
Q Consensus        86 ~~~~-----~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (299)
                      ....     .+..+++++|++|.++.    ..+.++|+.|++||+....   +..+..     .+. ......|.+.+..
T Consensus        94 ~~g~~~~~~~~~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~---~~~~~~-----~~~-~~~~~~~~~~~~~  164 (346)
T 2q83_A           94 KKGSLYSKHGSFLFVVYDWIEGRPFELTVKQDLEFIMKGLADFHTASVG---YQPPNG-----VPI-FTKLGRWPNHYTK  164 (346)
T ss_dssp             TTSCSCEEETTEEEEEEECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTT---CCCCTT-----CCC-CBCTTCHHHHHHH
T ss_pred             CCCCEEEEECCEEEEEEEeecCccCCCCCHHHHHHHHHHHHHHHHhCCC---CCCCcc-----chh-cccccchHHHHHH
Confidence            3221     46789999999998653    3578999999999998753   211110     000 0112356554432


Q ss_pred             h--hhHHHHHHHHhhcCCh---H-------HHHHHHHHHHHHhc-----cccCCCCCcceeccCCCCCCeeecCCCCeEE
Q 022304          157 H--RLGYQLKLALDQYGDS---T-------IYQRGHRLMKNLAP-----LFEGVNVEPCLLHGDLWSGNISSDKNGEPVI  219 (299)
Q Consensus       157 ~--~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~l~~-----~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~i  219 (299)
                      .  .+..............   .       ..+.+.+.++.+..     +......+.++||||+|++|||+++++.++|
T Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~l  244 (346)
T 2q83_A          165 RCKQMETWKLMAEAEKEDPFSQLYLQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWV  244 (346)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEE
T ss_pred             HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEE
Confidence            1  1111111000000000   0       01112222222221     1000013689999999999999976667899


Q ss_pred             Eccc-cccCCchhhhhhhhh------cCCC----hhhHHHhhhhCCCCCCHHHHHHHHHHHH
Q 022304          220 LDPA-CYYGHNEAEFGMSWC------AGFG----GSFYNSYFEVMPKQPGFEKRRDLYMLYH  270 (299)
Q Consensus       220 ID~~-~~~g~~~~Dla~~~~------~~~~----~~f~~~Y~~~~~l~~~~~~r~~~~~l~~  270 (299)
                      |||+ +++|+|++|++.+..      ..++    +.|+++|.+..|+++....++..+.+++
T Consensus       245 IDfe~a~~g~~~~Dla~~l~~~~~~~~~~~~~~~~~~l~~Y~~~~~l~~~e~~~l~~~~~~~  306 (346)
T 2q83_A          245 IDLDTVSFDLPIRDLRKMIIPLLDTTGVWDDETFNVMLNAYESRAPLTEEQKQVMFIDMLFP  306 (346)
T ss_dssp             CCCTTCEECCTHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHSC
T ss_pred             EehhhcccCChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHCH
Confidence            9996 679999999997631      2233    4799999999999876656666555543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=99.94  E-value=6.2e-26  Score=200.57  Aligned_cols=247  Identities=15%  Similarity=0.150  Sum_probs=169.9

Q ss_pred             cccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCC
Q 022304            3 VAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRA   79 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~v   79 (299)
                      ...++.+.|.++|...+.... .++++++ |.+|.+|+|++++| +||+|++++.  ....+..|.+++++|++. +++|
T Consensus         8 ~~~l~~~~i~~~l~~~g~~~~-~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~-g~~v   84 (328)
T 1zyl_A            8 FQTLHPDTIMDALFEHGIRVD-SGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVND-EVPV   84 (328)
T ss_dssp             CCCCCHHHHHHHHHHTTCCCC-SCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHT-TCSB
T ss_pred             CCCCCHHHHHHHHHHcCCCCC-ceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHc-CCee
Confidence            457889999999976644321 3677887 88999999998777 7999998742  346688899999999987 6999


Q ss_pred             ccceee-cccC---CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHH
Q 022304           80 PRPFKV-GALP---TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWI  151 (299)
Q Consensus        80 P~~~~~-~~~~---~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  151 (299)
                      |+|+.. +..-   .|..+++++|++|.++.    ...+++|+.|++||+....   +....         ...|  ++.
T Consensus        85 p~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~---~~~~~---------~~~~--~~~  150 (328)
T 1zyl_A           85 AAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRK---QLFIH---------RPTI--GLN  150 (328)
T ss_dssp             CCCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTS---SCCSS---------SCBC--SHH
T ss_pred             cceeecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhcc---CCCcc---------CCCC--CHH
Confidence            999986 2111   46778999999997653    3578999999999998863   11110         0112  333


Q ss_pred             HHHHHhhhHHHHHHHHhhcCCh----HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-cccc
Q 022304          152 EFYAEHRLGYQLKLALDQYGDS----TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-ACYY  226 (299)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~~~  226 (299)
                      .+...  ....++.  ....+.    ...+.++++++.+...+.. ..+.++||||+|++|||++ + .++|||| .+++
T Consensus       151 ~~~~~--~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          151 EYLIE--PRKLFED--ATLIPSGLKAAFLKATDELIAAVTAHWRE-DFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             HHTHH--HHHHHHT--CSSSCTTTHHHHHHHHHHHHHHHHHHCCS-CSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             HHHhh--HHHHHhh--cCcCCHHHHHHHHHHHHHHHHHHHHHhhh-cCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            33211  1111110  001111    1233445555555555543 2578999999999999998 4 6899999 5789


Q ss_pred             CCchhhhhhhhhcC------CChhhHHHhhhhCCCCCCHHHHHHHHHHHHHHH
Q 022304          227 GHNEAEFGMSWCAG------FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLN  273 (299)
Q Consensus       227 g~~~~Dla~~~~~~------~~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~  273 (299)
                      |++.+|++++..+.      ..+.|+++|.+..++++....++..+...+.+.
T Consensus       224 g~~~~Dla~~l~~~~~~~~~~~~~~l~~Y~~~~~l~~~e~~~l~~~~~~r~l~  276 (328)
T 1zyl_A          224 GPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY  276 (328)
T ss_dssp             ECTTHHHHTTCCSSHHHHHHHHHHHHHHHTTTSCCCGGGGGGHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999874322      124799999999998876666666665555543

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=99.94  E-value=6.3e-27  Score=201.46  Aligned_cols=220  Identities=12%  Similarity=0.109  Sum_probs=144.3

Q ss_pred             eeeeeCCcccc-ceEEEEeCCc--cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           26 KICPVGGGCIN-LASRYGTDAG--SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n-~~y~v~~~~g--~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      +++++.+|.+| .+||++...+  +||||+.+......+.+|+++|++|+.  ++|||+|+..+.. .+..|++|++++|
T Consensus        28 ~~~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~--~vPVP~v~~~~~~-~~~~~lvme~l~G  104 (272)
T 4gkh_A           28 RWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTA--FMPLPTIKHFIRT-PDDAWLLTTAIPG  104 (272)
T ss_dssp             EEEEEECSSSSCEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTT--TSCCCCEEEEEEE-TTEEEEEEECCCS
T ss_pred             eEEEccCCCcCCeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhcc--CCCcCeEEEEEEE-CCeEEEEEEeeCC
Confidence            57788888887 5899987543  899999886555668899999999976  5899999988765 5789999999999


Q ss_pred             CCCC-----------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcC
Q 022304          103 GSSR-----------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYG  171 (299)
Q Consensus       103 ~~~~-----------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (299)
                      .++.           ....++++.|++||+.+.+.  +++..            ....+...... +........ ....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~L~~Lh~~~~~~--~~~~~------------~~~~~~~~~~~-~~~~~~~~~-~~~~  168 (272)
T 4gkh_A          105 KTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCN--CPFNS------------DRVFRLAQAQS-RMNNGLVDA-SDFD  168 (272)
T ss_dssp             EEHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCGGG--CCBBC------------CHHHHHHHHHH-HHHTTCCCG-GGCC
T ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHhcCCCccc--CCcCc------------ccccchhhHHH-HHHHhhhhh-hhcc
Confidence            7641           23578999999999987532  22110            00000000000 000000000 0000


Q ss_pred             ChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh--hcCC----Chh
Q 022304          172 DSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW--CAGF----GGS  244 (299)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~--~~~~----~~~  244 (299)
                      .........++.+.+...... ..++++||||+|++|||+++++.++||||+ +.+|||++||++++  +..+    .+.
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~~-~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~gdp~~Dla~~~~~~~~~~~~~~~~  247 (272)
T 4gkh_A          169 DERNGWPVEQVWKEMHKLLPF-SPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKR  247 (272)
T ss_dssp             GGGTTCCHHHHHHHHHTTCCC-CCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEEETHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcccc-cCCcEEEcCCCCCCeEEEECCeEEEEEECcccccCCHHHHHHHHHHHhhhcCHHHHHH
Confidence            001111223344444443333 467899999999999999987767899985 68999999999863  2333    357


Q ss_pred             hHHHhhhhCCCCCCHHHHHHHHHHH
Q 022304          245 FYNSYFEVMPKQPGFEKRRDLYMLY  269 (299)
Q Consensus       245 f~~~Y~~~~~l~~~~~~r~~~~~l~  269 (299)
                      |+++|....+   + .+|+.+|+++
T Consensus       248 fl~~Yg~~~~---d-~~rl~~Y~lL  268 (272)
T 4gkh_A          248 LFQKYGIDNP---D-MNKLQFHLML  268 (272)
T ss_dssp             HHHHHTCSSC---C-HHHHHHHHHH
T ss_pred             HHHHcCCCCC---C-HHHHHHHHHH
Confidence            8899974332   2 5789999764

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=99.92  E-value=2.2e-24  Score=191.11  Aligned_cols=238  Identities=11%  Similarity=0.046  Sum_probs=147.7

Q ss_pred             cchHHHHHHhcCCCcceeeeeeeCCccccc-eEEEEeC-CccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceee
Q 022304            8 DDPIREWILSEGKATHITKICPVGGGCINL-ASRYGTD-AGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKV   85 (299)
Q Consensus         8 ~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~-~y~v~~~-~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~   85 (299)
                      .+.+..||.+++  ..+.+++++++|.+|. +|+++++ +++||+|..++.....+..|++++++|++. +++||+++..
T Consensus         6 ~~~l~~~l~~~~--~~~~~~~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~~~~~~e~~~l~~L~~~-g~~vP~v~~~   82 (333)
T 3csv_A            6 EDEIRDFLATHG--YADWNRTPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEGGDTQPFVDLAQYLRNL-DISAPEIYAE   82 (333)
T ss_dssp             HHHHHHHHHHTT--CTTCEECC--------CCEEEECTTCCEEEEEECCTTTTCCSHHHHHHHHHHHHT-TCBCCCEEEE
T ss_pred             HHHHHHHHHhcC--CCCceeeECCCCCCCceEEEEEcCCCCeEEEEECCCCCCccccHHHHHHHHHHhC-CCCCCceeee
Confidence            467889998873  4567899999998887 7799875 569999988764325578999999999987 7999999998


Q ss_pred             cccCCCceEEEEecccCCCC-------C----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHH
Q 022304           86 GALPTGGSYIIMEFIEFGSS-------R----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFY  154 (299)
Q Consensus        86 ~~~~~~~~~~v~e~l~G~~~-------~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (299)
                      +..   ..+++||++.|..+       +    ....++|+.|++||+.+.+    +++.... ...   ......|.+++
T Consensus        83 d~~---~g~ll~e~l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~----~~~~~~~-~~~---~~~~~~~~~~~  151 (333)
T 3csv_A           83 EHA---RGLLLIEDLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTP----ELARLDP-ETL---SEMTRLAFSEY  151 (333)
T ss_dssp             ETT---TTEEEECCCCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCC----CCCBCCH-HHH---HHTTTHHHHTH
T ss_pred             cCC---CCEEEEeeCCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCc----cCCccCH-HHH---HHHHHHHHHHH
Confidence            542   23899999988543       1    2357899999999998863    1110000 000   00001122222


Q ss_pred             HHhhhHHHHHHHHhhcCC-hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC----CCeEEEccc-cccCC
Q 022304          155 AEHRLGYQLKLALDQYGD-STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN----GEPVILDPA-CYYGH  228 (299)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~----~~~~iID~~-~~~g~  228 (299)
                      ....+          ... ......+.+.++.+...+.  ..+.++||||+|++|||++++    +.++||||+ +++|+
T Consensus       152 ~~~~l----------~~~~~~~~~~l~~~~~~l~~~~~--~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~  219 (333)
T 3csv_A          152 RYAIL----------GDAAEDNRKRFEHRFAQILSAQL--EGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH  219 (333)
T ss_dssp             HHHHH----------SSCCHHHHHHHHHHHHHHHHHHC--CSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred             HHHhc----------CCCcHHHHHHHHHHHHHHHHhcc--cCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence            11000          000 1112333444444433333  246799999999999999864    458999985 78999


Q ss_pred             chhhhhhhhh---cCCC----hhhHHHhhhhCCCCC-CHHHHHHHHHHHHH
Q 022304          229 NEAEFGMSWC---AGFG----GSFYNSYFEVMPKQP-GFEKRRDLYMLYHY  271 (299)
Q Consensus       229 ~~~Dla~~~~---~~~~----~~f~~~Y~~~~~l~~-~~~~r~~~~~l~~~  271 (299)
                      |.+|++.+..   ..++    ++|+++|.+..+++. ++.....++.+.+.
T Consensus       220 ~~~DLa~ll~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~R~  270 (333)
T 3csv_A          220 RAYDLVSLLQDARRDVPAQVEAQMIDHYIQATGVDESHFRSAYAVIAVQRN  270 (333)
T ss_dssp             TTHHHHHHHSCTTSCCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhcccccCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            9999998643   1232    579999999988763 33334444443333

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.92  E-value=5.5e-25  Score=187.73  Aligned_cols=216  Identities=15%  Similarity=0.148  Sum_probs=145.5

Q ss_pred             eeeeeC-CccccceEEEEeCCc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           26 KICPVG-GGCINLASRYGTDAG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        26 ~~~~~~-~G~~n~~y~v~~~~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++++++ +|..|.+|++++.+| +||+|+.+......+..|+++++.|+.+ +++||+++..+.. .+..+++|+|++|.
T Consensus        23 ~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~-~~~vP~~~~~~~~-~~~~~~v~e~i~G~  100 (264)
T 1nd4_A           23 DWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATT-GVPCAAVLDVVTE-AGRDWLLLGEVPGQ  100 (264)
T ss_dssp             EEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTT-TCCBCCEEEEEEC-SSCEEEEEECCSSE
T ss_pred             ceEecccCCCCceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhC-CCCCCeEEEeccC-CCCCEEEEEecCCc
Confidence            456775 666799999988766 7999998765446688999999999887 7999999988764 46789999999998


Q ss_pred             CCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChH--
Q 022304          104 SSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDST--  174 (299)
Q Consensus       104 ~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  174 (299)
                      ++.       ....++|+.|++||+.+.+.  +.+                ..|...... .....+   .....+..  
T Consensus       101 ~l~~~~~~~~~~~~~l~~~l~~lh~~~~~~--~~~----------------~~~~~~~~~-~~~~~~---~~~~~~~~~~  158 (264)
T 1nd4_A          101 DLLSSHLAPAEKVSIMADAMRRLHTLDPAT--CPF----------------DHQAKHRIE-RARTRM---EAGLVDQDDL  158 (264)
T ss_dssp             ETTTSCCCHHHHHHHHHHHHHHHTTSCGGG--CCC----------------BCCHHHHHH-HHHHHH---HTTCCCTTSC
T ss_pred             ccCcCcCCHhHHHHHHHHHHHHHhCCCCCC--CCC----------------chHHHHHHH-HHHHHH---hcCCccchhh
Confidence            763       34688999999999977421  111                011111111 111111   11111110  


Q ss_pred             ----HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh--c-CC----C
Q 022304          175 ----IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC--A-GF----G  242 (299)
Q Consensus       175 ----~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~--~-~~----~  242 (299)
                          ....+.++.+.+...+.. ..+.++||||+|++|||+++++.++||||+ +.+|+|.+|++.+..  . .+    -
T Consensus       159 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g~~~~Dla~~~~~~~~~~~~~~~  237 (264)
T 1nd4_A          159 DEEHQGLAPAELFARLKARMPD-GEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWA  237 (264)
T ss_dssp             CGGGTTCCHHHHHHHHHHTCCS-SCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEEETHHHHHHHHHHHHHHHCHHHH
T ss_pred             hhhccCccHHHHHHHHHHhcCC-CCCeEEECCCCCCCcEEEECCcEEEEEcchhcccCChHHHHHHHHhhhhhhcCcHHH
Confidence                001233444444444333 357899999999999999876656799996 689999999997631  1 22    2


Q ss_pred             hhhHHHhhhhCCCCCCHHHHHHHHHHHH
Q 022304          243 GSFYNSYFEVMPKQPGFEKRRDLYMLYH  270 (299)
Q Consensus       243 ~~f~~~Y~~~~~l~~~~~~r~~~~~l~~  270 (299)
                      ++|+++|. ..+.+   .+|+.+|+++.
T Consensus       238 ~~fl~~Y~-~~~~~---~~r~~~y~~l~  261 (264)
T 1nd4_A          238 DRFLVLYG-IAAPD---SQRIAFYRLLD  261 (264)
T ss_dssp             HHHHHHHT-CSSCC---HHHHHHHHHHG
T ss_pred             HHHHHHhc-CcCCC---HHHHHHHHHHH
Confidence            57999997 33333   68889987653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=99.91  E-value=4.4e-23  Score=180.31  Aligned_cols=255  Identities=16%  Similarity=0.162  Sum_probs=162.7

Q ss_pred             CCcchHHHHHHhcCCC-cceeeeeeeCCccccceEEEEeCCccEEEEecCCCCc--chHHHHHHHHHHHHhcCCCCCccc
Q 022304            6 LSDDPIREWILSEGKA-THITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGP--SMFEGEALGLGAMYETRTIRAPRP   82 (299)
Q Consensus         6 ~~~~~i~~~l~~~~~~-~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~--~~~~~E~~~l~~L~~~~~~~vP~~   82 (299)
                      |+. .+...+... +. .....++++++|.+|.+|++    ++||+|+++....  ...+.|+.+++.|++. +++ |++
T Consensus         3 ~~~-~~~~~i~~~-p~l~~~~~i~~l~gG~tN~~~~~----~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~-g~~-P~~   74 (301)
T 3dxq_A            3 MTD-EARAKLAAI-PMLAGYTGPLERLGGLTNLVFRA----GDLCLRIPGKGTEEYINRANEAVAAREAAKA-GVS-PEV   74 (301)
T ss_dssp             HHH-HHHHHTTTC-TTTTTCCSCEEEESCSSEEEEEE----TTEEEEEECC----CCCHHHHHHHHHHHHHT-TSS-CCE
T ss_pred             CCh-HHHHHHHhC-CccccccceeEcCCcccccccee----eeEEEECCCCCccceeCHHHHHHHHHHHHHc-CCC-Cce
Confidence            444 455555555 22 13456899999999999999    7999999986422  2347899999999987 677 999


Q ss_pred             eeecccCCCceEEEEecc-cCCCCC--------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHH
Q 022304           83 FKVGALPTGGSYIIMEFI-EFGSSR--------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEF  153 (299)
Q Consensus        83 ~~~~~~~~~~~~~v~e~l-~G~~~~--------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (299)
                      +..+.   ...+++++|+ +|.++.        ....++|+.|++||+...+   ++..             + .-+   
T Consensus        75 ~~~~~---~~~~~v~e~i~~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~---~~~~-------------~-~~~---  131 (301)
T 3dxq_A           75 LHVDP---ATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAV---FPFR-------------F-ELF---  131 (301)
T ss_dssp             EEECT---TTCCEEEECCTTCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCC---CSSB-------------C-CHH---
T ss_pred             EEEEC---CCCEEEEeecCCCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCC---CCCC-------------C-CHH---
Confidence            98763   4568999999 887663        2368899999999997742   2110             0 011   


Q ss_pred             HHHhhhHHHHHHHHhhc-CChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchh
Q 022304          154 YAEHRLGYQLKLALDQY-GDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEA  231 (299)
Q Consensus       154 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~  231 (299)
                         .++..+.+...... ..+...+.+.+.++.+...+...+.+.++||||+|++|||.+ ++.++||||+ +.+|||.+
T Consensus       132 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~HgDl~~~Nil~~-~~~~~lID~e~a~~g~~~~  207 (301)
T 3dxq_A          132 ---AMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACHCDPLCENFLDT-GERMWIVDWEYSGMNDPLW  207 (301)
T ss_dssp             ---HHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCEEECSCCCGGGEEEC-SSCEEECCCTTCEEECTHH
T ss_pred             ---HHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCEEEC-CCCEEEEecccccCCCHHH
Confidence               11222222222211 111122344444444444443324678999999999999964 4558999995 78999999


Q ss_pred             hhhhhhh-cCCC----hhhHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHhh-------Cc---ccHHHHHHHHHHHHHH
Q 022304          232 EFGMSWC-AGFG----GSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHYNLF-------GS---GYRSSALSIIDDYLRM  296 (299)
Q Consensus       232 Dla~~~~-~~~~----~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l~~~~~~-------~~---~~~~~~~~~~~~~~~~  296 (299)
                      |++.+.. ..++    +.|+++|.+..+ ++....++..|.+...+.+. .+       +.   .|..=+..-++++.+.
T Consensus       208 Dla~~~~~~~~~~~~~~~~l~~Y~~~~~-~~~~~~~~~~~~~~~~~~w~-~W~~~q~~~~~~~~d~~~ya~~r~~~~~~~  285 (301)
T 3dxq_A          208 DLGDLSVEGKFNANQDEELMRAYFGGEA-RPAERGRVVIYKAMCDLLWT-LWGLIQLANDNPVDDFRAYADGRFARCKAL  285 (301)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCccHHHHHHHHHHHHHHH
Confidence            9998643 3454    479999998754 33345677777665554322 11       21   4555555555555554


Q ss_pred             h
Q 022304          297 L  297 (299)
Q Consensus       297 ~  297 (299)
                      +
T Consensus       286 ~  286 (301)
T 3dxq_A          286 M  286 (301)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.91  E-value=1.1e-23  Score=180.29  Aligned_cols=214  Identities=14%  Similarity=0.104  Sum_probs=139.8

Q ss_pred             eeee-CCccccceEEEEeCCccEEEEecCC---CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPV-GGGCINLASRYGTDAGSFFVKTNRS---IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~-~~G~~n~~y~v~~~~g~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      +++. ++|..|.||++++++++||+|+.+.   .....+++|++++++|+.  +++||+++..+.. .+..|++|+|++|
T Consensus        18 ~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~--~~~vP~v~~~~~~-~~~~~lv~e~i~G   94 (263)
T 3tm0_A           18 CVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEG--KLPVPKVLHFERH-DGWSNLLMSEADG   94 (263)
T ss_dssp             EEECCSCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTT--TSCCCCEEEEEEE-TTEEEEEEECCSS
T ss_pred             eEeeccCCCCCeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhc--CCCCCeEEEEEec-CCceEEEEEecCC
Confidence            4444 4445688999998878999999874   344568999999999976  5899999988765 6789999999999


Q ss_pred             CCCC----------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHH----h
Q 022304          103 GSSR----------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLAL----D  168 (299)
Q Consensus       103 ~~~~----------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  168 (299)
                      .++.          ....++|+.|++||+.+.+.  ++.                ..|...... ..........    .
T Consensus        95 ~~l~~~~~~~~~~~~~~~~l~~~l~~LH~~~~~~--~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~  155 (263)
T 3tm0_A           95 VLCSEEYEDEQSPEKIIELYAECIRLFHSIDISD--CPY----------------TNSLDSRLA-ELDYLLNNDLADVDC  155 (263)
T ss_dssp             EEHHHHCCTTTCHHHHHHHHHHHHHHHHHSCCTT--CSC----------------BCCHHHHHH-HHHHHHHTTCSCCSG
T ss_pred             eehhhccCCcccHHHHHHHHHHHHHHHhCCCccc--CCC----------------cchHHHHHH-HHHHHHhcccccccc
Confidence            7641          13578999999999977531  111                011111111 0111110000    0


Q ss_pred             -hcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhh--h-cC---
Q 022304          169 -QYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSW--C-AG---  240 (299)
Q Consensus       169 -~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~--~-~~---  240 (299)
                       ...+.......+++.+.+.....  ..++++||||+|++|||+++++.++||||+ +.+|||.+|++.+.  + ..   
T Consensus       156 ~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~gd~~~Dla~~~~~~~~~~~~  233 (263)
T 3tm0_A          156 ENWEEDTPFKDPRELYDFLKTEKP--EEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGE  233 (263)
T ss_dssp             GGGSTTCSSSSHHHHHHHHHHCCC--CCCEEEECSSCCTTSEEEETTEEEEECCCTTCEEEEHHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccCCCHHHHHHHHHhcCC--CCCceEECCCCCcCcEEEECCcEEEEEEchhcccCCHHHHHHHHHHHhhhccCc
Confidence             00000001123334444443333  257899999999999999876656899996 68999999999762  1 11   


Q ss_pred             --CChhhHHHhhhhCCCCCCHHHHHHHHHHH
Q 022304          241 --FGGSFYNSYFEVMPKQPGFEKRRDLYMLY  269 (299)
Q Consensus       241 --~~~~f~~~Y~~~~~l~~~~~~r~~~~~l~  269 (299)
                        +.+.|+++|+.  ..+   .+++.+|+++
T Consensus       234 ~~~~~~~~~~Y~~--~~d---~~~~~~~~~l  259 (263)
T 3tm0_A          234 EQYVELFFDLLGI--KPD---WEKIKYYILL  259 (263)
T ss_dssp             THHHHHHHHHHTS--CCC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCC---HHHHHHHHHH
Confidence              23579999985  222   4788888664

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=99.88  E-value=1.4e-21  Score=178.71  Aligned_cols=203  Identities=16%  Similarity=0.139  Sum_probs=134.8

Q ss_pred             ceeeeeeeCCccccceEEEEeCC---------ccEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGTDA---------GSFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~---------g~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ...+++++++|.+|.+|+|++.+         ++||+|+++. .....+..|..+++.|++. ++ +|+++.....    
T Consensus        74 ~~~~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~~-g~-~P~l~~~~~~----  147 (429)
T 1nw1_A           74 EHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSER-HL-GPKLYGIFSG----  147 (429)
T ss_dssp             GGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHT-TS-SSCEEEEETT----
T ss_pred             cceEEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHhC-CC-CCcEEEEeCC----
Confidence            46789999999999999999753         5899999965 3314556899999999987 45 6999987532    


Q ss_pred             eEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHH
Q 022304           93 SYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKL  165 (299)
Q Consensus        93 ~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                       +++++|++|.++.       ....++|+.|++||+...+   ++.        .  .+ |  .|.      .+..+.+.
T Consensus       148 -g~v~e~l~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~---~~~--------~--~~-~--~~~------~i~~w~~~  204 (429)
T 1nw1_A          148 -GRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVP---IWK--------E--PD-Y--LCE------ALQRWLKQ  204 (429)
T ss_dssp             -EEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCS---SCC--------S--SC-H--HHH------HHHHHHHH
T ss_pred             -CEEEEEeCCcccChhhcCCHHHHHHHHHHHHHHhCCccc---cCC--------C--cc-h--HHH------HHHHHHHH
Confidence             4999999997653       2367999999999997742   110        0  00 0  111      11111111


Q ss_pred             HHhhcCC-------------hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC------------------
Q 022304          166 ALDQYGD-------------STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN------------------  214 (299)
Q Consensus       166 ~~~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~------------------  214 (299)
                      .......             ......+.+.++.+...+.....+.++||||++++|||++++                  
T Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~  284 (429)
T 1nw1_A          205 LTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALG  284 (429)
T ss_dssp             HHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC-------------------
T ss_pred             HHhhcccccccccccccccccccHHHHHHHHHHHHHhccccCCCeEEEeCCCCCCeEEeeCCcccccccccccccccccc
Confidence            1111000             001233444445555444332467899999999999999875                  


Q ss_pred             ----------CCeEEEccc-cccCCchhhhhhhhh-c-----------------CCC-----hhhHHHhhhhCC
Q 022304          215 ----------GEPVILDPA-CYYGHNEAEFGMSWC-A-----------------GFG-----GSFYNSYFEVMP  254 (299)
Q Consensus       215 ----------~~~~iID~~-~~~g~~~~Dla~~~~-~-----------------~~~-----~~f~~~Y~~~~~  254 (299)
                                +.++||||+ +++|+|++|||...+ .                 .++     ..|+++|.+..+
T Consensus       285 ~~~~~~~~~~~~~~lIDfEya~~g~p~~DLA~~~~e~~~~~~~~~~p~~~~~~~~~p~~~~~~~fl~~Y~~~~~  358 (429)
T 1nw1_A          285 NSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQG  358 (429)
T ss_dssp             -----------CCEECCCTTCEEEEHHHHHHHHHHHTTEECCCSSTTSCEECGGGSCCHHHHHHHHHHHHHHHT
T ss_pred             ccccccccCCCeEEEEecccCCcCccHHHHHHHHHHHhcccCCccCCCcccCcccCcCHHHHHHHHHHHHHhcC
Confidence                      557999995 789999999996521 1                 122     379999998765

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=99.88  E-value=2.4e-21  Score=178.03  Aligned_cols=211  Identities=16%  Similarity=0.145  Sum_probs=132.1

Q ss_pred             ceeeeeeeCCccccceEEEEeCC--ccEEEEecCCCCcchH--HHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           23 HITKICPVGGGCINLASRYGTDA--GSFFVKTNRSIGPSMF--EGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~~~~~~--~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ...+++++++|.+|.+|+|++++  ++||+|+++......+  +.|..+++.|+.. ++ +|+++....   +  .++++
T Consensus       109 ~~~~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~-gl-~P~ll~~~~---~--G~v~e  181 (458)
T 2qg7_A          109 DSLEFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNK-NI-AKKIYVFFT---N--GRIEE  181 (458)
T ss_dssp             TTEEEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTS-SS-BCCEEEEET---T--EEEEE
T ss_pred             cCeEEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhc-CC-CCCEEEEeC---C--eEEEE
Confidence            45689999999999999999987  6899999975433223  7899999999986 44 799998763   1  36999


Q ss_pred             cccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCC----CcccccccCCCCCCCHHHHHHHhhhHHHHHHHH
Q 022304           99 FIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVD----NTIGSTPQINKWTSNWIEFYAEHRLGYQLKLAL  167 (299)
Q Consensus        99 ~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (299)
                      |++|.++.       ....++|+.|++||+...+.  +++...    +..+ .+..    ..|..      +..++....
T Consensus       182 ~I~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~--~~~~~l~~~~~~~~-~~~~----~~~~~------i~~w~~~~~  248 (458)
T 2qg7_A          182 FMDGYALSREDIKNPKFQKLIAKNLKLLHDIKLNE--NLYKELQVTQKVPG-TRPS----FLWNT------IWKYFHLLN  248 (458)
T ss_dssp             CCCSEECCTTTTTSHHHHHHHHHHHHHHHTCCCCH--HHHHHHHHHHTCCS-SSCC----SHHHH------HHHHHHHHH
T ss_pred             eeCCccCChhhcCCHHHHHHHHHHHHHHhcCCccc--cchhcccccccccC-CCCc----cHHHH------HHHHHHHHH
Confidence            99997653       23678999999999987531  110000    0000 0001    11211      111111111


Q ss_pred             hhc--C-----ChH-----HHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeec-----------------------
Q 022304          168 DQY--G-----DST-----IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSD-----------------------  212 (299)
Q Consensus       168 ~~~--~-----~~~-----~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~-----------------------  212 (299)
                      ...  .     ...     ....+.+.++.+...+.....+.++||||++++|||++                       
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~~v~cHnDl~~gNIL~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
T 2qg7_A          249 EERKKICSFDAKANILKLIDFDVLRDSIVEVESLCKRENSPIVLCHCDLLSSNIINTVGGGEAGELGEAGETGEGGETGE  328 (458)
T ss_dssp             HHHHSCCCTTSTTHHHHHBCHHHHHHHHHHHHHHHHTTTCCEEEECSCCCGGGEEECCC---------------------
T ss_pred             HhccccccccchhhhcccCCHHHHHHHHHHHHHHhhhccCCeeEEecCCCCCcEEeeccccccccccccccccccccccc
Confidence            000  0     000     01233444444444443324578999999999999998                       


Q ss_pred             --------------CCCCeEEEccc-cccCCchhhhhhhhh--cCC--------C----hhhHHHhhhhC
Q 022304          213 --------------KNGEPVILDPA-CYYGHNEAEFGMSWC--AGF--------G----GSFYNSYFEVM  253 (299)
Q Consensus       213 --------------~~~~~~iID~~-~~~g~~~~Dla~~~~--~~~--------~----~~f~~~Y~~~~  253 (299)
                                    +++.++||||+ +.+|+|++|||.+..  .++        +    ..|+++|.+..
T Consensus       329 ~~~~~~~~~~~~~~~~~~l~lIDfEya~~gdp~~DLA~~~~ew~~~~~d~~~~P~~~~~~~fl~~Y~~~~  398 (458)
T 2qg7_A          329 GGETGEGGETGEGGEGDSISFIDFEYSCPMERAYDIANHFNEYAGFNCDWDLTPSKEEEYHFIMHYLGTD  398 (458)
T ss_dssp             --------------CCCCEEECCCTTCEEEEHHHHHHHHHHGGGTTTTCGGGSCCHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccCCCCCeEEEEeecCCCCCCcHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHhccC
Confidence                          34558999995 789999999997521  212        2    37999999775

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=99.87  E-value=1.5e-21  Score=175.41  Aligned_cols=207  Identities=11%  Similarity=0.038  Sum_probs=129.8

Q ss_pred             cCCcchHHHHHHhc-----CCCcceeeeeeeCCccccceEEEEeCC----------ccEEEEecCCCCcc--hHHHHHHH
Q 022304            5 ALSDDPIREWILSE-----GKATHITKICPVGGGCINLASRYGTDA----------GSFFVKTNRSIGPS--MFEGEALG   67 (299)
Q Consensus         5 ~~~~~~i~~~l~~~-----~~~~~~~~~~~~~~G~~n~~y~v~~~~----------g~~vlK~~~~~~~~--~~~~E~~~   67 (299)
                      .++.+.+..++...     +......+++++++|.+|.+|+|++.+          ++||+|+++.....  ....|.++
T Consensus        11 ~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~   90 (369)
T 3c5i_A           11 LTDPLYIKKICLEKVPEWNHFTEDNLRVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEV   90 (369)
T ss_dssp             CCCHHHHHHHHHHHCGGGTTCCGGGEEEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHCCCCCCCCcCceEEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHH
Confidence            34566777777766     333355789999999999999999875          58999999764322  24789999


Q ss_pred             HHHHHhcCCCCCccceeecccCCCceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 022304           68 LGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGST  140 (299)
Q Consensus        68 l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~  140 (299)
                      ++.|+.. ++ +|+++....     .+++++|++|.++.       ....++|+.|++||+...+.. ++  .  ...  
T Consensus        91 l~~L~~~-g~-~P~~~~~~~-----~~~v~e~i~G~~l~~~~~~~~~~~~~~a~~La~lH~~~~~~~-~~--~--~~~--  156 (369)
T 3c5i_A           91 YKTMSKY-KI-APQLLNTFN-----GGRIEEWLYGDPLRIDDLKNPTILIGIANVLGKFHTLSRKRH-LP--E--HWD--  156 (369)
T ss_dssp             HHHHHHT-TS-SCCEEEEET-----TEEEEECCCSEECCGGGGGCHHHHHHHHHHHHHHHTHHHHSC-CC--T--TSC--
T ss_pred             HHHHHhc-CC-CCceEEecC-----CcEEEEEecCCcCChhhcCChHHHHHHHHHHHHHHcCccccc-Cc--c--cCC--
Confidence            9999987 56 999997652     37999999997652       246899999999999764210 10  0  000  


Q ss_pred             ccCCCCCCCHHHHHHHhhhHHHHHHHHhhc------CC-hHHHHHHHHHHHHHhcc--ccCCCCCcceeccCCCCCCeee
Q 022304          141 PQINKWTSNWIEFYAEHRLGYQLKLALDQY------GD-STIYQRGHRLMKNLAPL--FEGVNVEPCLLHGDLWSGNISS  211 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~l~~~--l~~~~~~~~liHgDl~~~Nvl~  211 (299)
                          .+.    .++.  ++..+.+.+....      .+ ..+.+.++++.+.+...  +.....+.++||||+|++|||+
T Consensus       157 ----~~p----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~HgDl~~~Nil~  226 (369)
T 3c5i_A          157 ----RTP----CIFK--MMEKWKNQLFKYKNIEKYNCDIHKYIKESDKFIKFMKVYSKSDNLANTIVFCHNDLQENNIIN  226 (369)
T ss_dssp             ----CSC----HHHH--HHHHHHHHHTTCSSGGGC-CCHHHHHHHHHHHHHHHHHHTTSSCGGGCEEEECSCCCGGGEEE
T ss_pred             ----CCC----cHHH--HHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEeCCCCcccEEe
Confidence                000    0111  1222222111100      00 11222333333333321  1111357899999999999999


Q ss_pred             cCCCCeEEEccc-cccCCchhhhhhh
Q 022304          212 DKNGEPVILDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       212 ~~~~~~~iID~~-~~~g~~~~Dla~~  236 (299)
                      ++++ ++||||+ +++|+|++||+.+
T Consensus       227 ~~~~-~~lID~e~a~~g~~~~Dla~~  251 (369)
T 3c5i_A          227 TNKC-LRLIDFEYSGFNFLATDIANF  251 (369)
T ss_dssp             CC-C-EEECCCTTCEEEEHHHHHHHH
T ss_pred             cCCc-EEEEEecCCCCCchHHHHHHH
Confidence            7665 8999995 7899999999975

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=99.87  E-value=9e-22  Score=179.84  Aligned_cols=217  Identities=18%  Similarity=0.177  Sum_probs=138.0

Q ss_pred             cccCCcchHHHHHH---hcC---CCc---ceeeeeeeCCccccceEEEEeCCccEEEEecCC-------C---CcchHHH
Q 022304            3 VAALSDDPIREWIL---SEG---KAT---HITKICPVGGGCINLASRYGTDAGSFFVKTNRS-------I---GPSMFEG   63 (299)
Q Consensus         3 ~~~~~~~~i~~~l~---~~~---~~~---~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~-------~---~~~~~~~   63 (299)
                      ...|+.+.+.+++.   +.+   ...   ...+++++++|..|.+|++++++++||||...+       .   .......
T Consensus         6 ~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~l~~G~~n~vyrv~~~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~   85 (420)
T 2pyw_A            6 FTPLNEKSLVDYIKSTPALSSKIGADKSDDDLVIKEVGDGNLNFVFIVVGSSGSLVIKQALPYIRCIGESWPMTKERAYF   85 (420)
T ss_dssp             CCCCCTTHHHHHHHTCHHHHHHHTTTTCCCCCEEEECCCSSSCEEEEEECSSCEEEEEECCSBCTTTCTTSBCCTTHHHH
T ss_pred             cccCChhhHHHHHhchhhhhhhcCCcccccceEEEEccCCCcEEEEEEEcCCceEEEEECchhhcccCcccccchhHHHH
Confidence            45789999999998   321   222   457899999999999999987767999994321       1   1133456


Q ss_pred             HHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc-cCCC-----------CCCcHHHHHHHHHHHHhcCCCC-----
Q 022304           64 EALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI-EFGS-----------SRGNQSVFGKKLAEMHKAGKSS-----  126 (299)
Q Consensus        64 E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l-~G~~-----------~~~~~~~lg~~La~lH~~~~~~-----  126 (299)
                      |.+++..++...+++||+++..+   .+..+++|||+ +|..           .+..++++|+.|+++|..+...     
T Consensus        86 E~e~l~~~~~~~~~~vP~v~~~~---~~~~~lv~e~l~~g~~~l~~~l~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~  162 (420)
T 2pyw_A           86 EATTLRKHGNLSPDHVPEVYHFD---RTMALIGMRYLEPPHIILRKGLIAGIEYPFLADHMSDYMAKTLFFTSLLYHDTT  162 (420)
T ss_dssp             HHHHHHHHHHHSGGGSCCEEEEE---TTTTEEEECCCCTTCEEHHHHHHHTCCCTTHHHHHHHHHHHHHHTTSTTTSCHH
T ss_pred             HHHHHHHHHhhCCCCCCeEEEEC---CCccEEEEeecCCcchhHHHHHhcCCCCHHHHHHHHHHHHHHHHhccccccChh
Confidence            77777777765568999999987   36789999999 8821           1246789999999999887521     


Q ss_pred             ------CCCCCCC------CCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCC
Q 022304          127 ------KGFGFDV------DNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVN  194 (299)
Q Consensus       127 ------~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  194 (299)
                            +.|++..      ....+..+..+.|...|...    .+........   .+..+...+.++.+.+..      
T Consensus       163 ~~~~~~~~fg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~l~---~~~~l~~~~~~l~~~~~~------  229 (420)
T 2pyw_A          163 EHRRAVTEFCGNVELCRLTEQVVFSDPYRVSTFNRWTSP----YLDDDAKAVR---EDSALKLEIAELKSMFCE------  229 (420)
T ss_dssp             HHHHHHHHHGGGHHHHHHHHHHTTTGGGSCCTTCCCSTT----TTHHHHHHHT---TCHHHHHHHHHHHHHHHH------
T ss_pred             hhHHHHHhcCCCHHHHHhhhhhcccccccccccccCCcH----hHHHHHHHhh---cCHHHHHHHHHHHHHHhc------
Confidence                  0122111      00111122223333333200    0111000000   111222233333332221      


Q ss_pred             CCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhh
Q 022304          195 VEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       195 ~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~  236 (299)
                      .+++|||||+|++|||+++++ ++||||+ +.+|+|++|++.+
T Consensus       230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~  271 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAY  271 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHH
T ss_pred             CCCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHH
Confidence            368999999999999998776 8999995 7899999999975

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=99.87  E-value=4.3e-21  Score=174.35  Aligned_cols=208  Identities=13%  Similarity=0.008  Sum_probs=134.3

Q ss_pred             cCCcchHHHHHHhcCCC-----cceeeeeeeCCccccceEEEEeC---------CccEEEEecCCCCc--chHHHHHHHH
Q 022304            5 ALSDDPIREWILSEGKA-----THITKICPVGGGCINLASRYGTD---------AGSFFVKTNRSIGP--SMFEGEALGL   68 (299)
Q Consensus         5 ~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~G~~n~~y~v~~~---------~g~~vlK~~~~~~~--~~~~~E~~~l   68 (299)
                      ..+.+.+..++....++     ....++++++||.+|.+|+|++.         .++||+|+++....  ...++|..++
T Consensus        48 ~~d~~~l~~l~~~~~p~w~~~~~~~~~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l  127 (424)
T 3mes_A           48 ITDTEIIIGICRKNIPGWKEINESYIEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVF  127 (424)
T ss_dssp             --CHHHHHHHHHHHSTTCTTCCGGGEEEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCccccCCCCceEEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHH
Confidence            45778888899887332     24678999999999999999987         46899999976432  2246899999


Q ss_pred             HHHHhcCCCCCccceeecccCCCceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccc
Q 022304           69 GAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTP  141 (299)
Q Consensus        69 ~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~  141 (299)
                      +.|+.. ++ +|+++....     .+++++|++|..+.       ....++++.|++||++.....  +++..  .+..|
T Consensus       128 ~~L~~~-gi-~P~l~~~~~-----~~~I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~--~L~~~--~~~~p  196 (424)
T 3mes_A          128 RYLSNI-NI-APNIIADFP-----EGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRA--DFPSR--FDKEP  196 (424)
T ss_dssp             HHHHHT-TS-SCCEEEEET-----TEEEEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCT--TSCTT--SCCSC
T ss_pred             HHHHhc-CC-CCCEEEEcC-----CCEEEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhc--cCccc--cCCCC
Confidence            999987 55 899997542     38999999998753       236899999999999875211  11110  00111


Q ss_pred             cCCCCCCCHHHHHHHhhhHHHHHHHHhhc-C-----C----hHHHHHHHHHHHHHhcc------------ccCCCCCcce
Q 022304          142 QINKWTSNWIEFYAEHRLGYQLKLALDQY-G-----D----STIYQRGHRLMKNLAPL------------FEGVNVEPCL  199 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~----~~~~~~~~~~~~~l~~~------------l~~~~~~~~l  199 (299)
                            .-|..      +..+.+...... .     .    ..+.+.++.+.+.+...            ......+.++
T Consensus       197 ------~~~~~------i~~w~~~~~~~~~~~~~~~~~~~~~~l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~  264 (424)
T 3mes_A          197 ------ILFKR------IYLWREEAKIQVSKNNFQIDKELYSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVF  264 (424)
T ss_dssp             ------CHHHH------HHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEE
T ss_pred             ------cHHHH------HHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHHhhhcccccccccccccccCCCCceE
Confidence                  11211      111111111100 0     0    01122233333323211            0011357899


Q ss_pred             eccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhh
Q 022304          200 LHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       200 iHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~  236 (299)
                      ||||++++||| ++++..+||||+ +.+|+|.+|||.+
T Consensus       265 ~H~D~~~~N~l-~~~~~~~~IDwe~a~~~~~~~Dla~~  301 (424)
T 3mes_A          265 AHNDLQENNLL-QTQNNIRMIDYEYSAINFAGADIANY  301 (424)
T ss_dssp             ECSCCCGGGEE-ECSSCEEECCCTTCEEEEHHHHHHHH
T ss_pred             ECCCCCcccee-cCCCcEEEEecccCCcCChHHHHHHH
Confidence            99999999999 566678999996 7899999999965

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=99.86  E-value=2.3e-20  Score=167.48  Aligned_cols=185  Identities=19%  Similarity=0.249  Sum_probs=119.6

Q ss_pred             ceeeeeeeCCccccceEEEEeCC---------ccEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTDA---------GSFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~---------g~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...++++++||.+|.+|+|++.+         ++||+|+++..  ....+.+|..+++.|+.. ++ +|+++..+..   
T Consensus        51 ~~l~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~-gv-~P~ll~~~~~---  125 (379)
T 3feg_A           51 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAER-SL-GPQLYGVFPE---  125 (379)
T ss_dssp             GGCCCEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHT-TS-SCCEEEEETT---
T ss_pred             CceEEEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhc-CC-CCeEEEEcCC---
Confidence            44578999999999999999853         48999998653  234567899999999987 56 5999987642   


Q ss_pred             ceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHH
Q 022304           92 GSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLK  164 (299)
Q Consensus        92 ~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (299)
                        .++|+|++|.++.       ....++++.|++||++..+   ++.+               ..|.  +  .++..+++
T Consensus       126 --g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~---~~~~---------------~~~l--~--~~i~~w~~  181 (379)
T 3feg_A          126 --GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMP---FTKE---------------PHWL--F--GTMERYLK  181 (379)
T ss_dssp             --EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCS---SCCS---------------CCHH--H--HHHHHHHH
T ss_pred             --ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCC---CCCC---------------cccH--H--HHHHHHHH
Confidence              3999999998763       1367899999999998753   2210               0110  0  12333333


Q ss_pred             HHHhhcCC-h---H-H-HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCC----CCeEEEccc-cccCCchhhh
Q 022304          165 LALDQYGD-S---T-I-YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN----GEPVILDPA-CYYGHNEAEF  233 (299)
Q Consensus       165 ~~~~~~~~-~---~-~-~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~----~~~~iID~~-~~~g~~~~Dl  233 (299)
                      .......+ .   . + ...+.+.++.+...+...+.+.++||||++++|||++++    +.++||||+ +.+|+|.+||
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~~~~Dl  261 (379)
T 3feg_A          182 QIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDI  261 (379)
T ss_dssp             HHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEEHHHHH
T ss_pred             HHHhccCcccchhhhhhhHHHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCChHHHH
Confidence            22221110 0   0 0 001222333333333332467899999999999999876    468999996 7899999999


Q ss_pred             hhh
Q 022304          234 GMS  236 (299)
Q Consensus       234 a~~  236 (299)
                      +.+
T Consensus       262 a~~  264 (379)
T 3feg_A          262 GNH  264 (379)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            975

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=99.82  E-value=2.2e-19  Score=162.78  Aligned_cols=216  Identities=15%  Similarity=0.196  Sum_probs=131.0

Q ss_pred             ccCCcchHHHHHHhcCC--CcceeeeeeeCCccccceEEEEe--CCccEEEEecCCC----------CcchHHHHHHHHH
Q 022304            4 AALSDDPIREWILSEGK--ATHITKICPVGGGCINLASRYGT--DAGSFFVKTNRSI----------GPSMFEGEALGLG   69 (299)
Q Consensus         4 ~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~G~~n~~y~v~~--~~g~~vlK~~~~~----------~~~~~~~E~~~l~   69 (299)
                      ..|+.+.+.+||.+.+.  +....+++++++|.+|.+|+++.  +++++|+|..++.          ....+..|.++++
T Consensus        10 ~~l~~~~v~~~l~~~~~~~~~~~~~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~   89 (397)
T 2olc_A           10 ETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALI   89 (397)
T ss_dssp             CCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhcCcCCCCCceEEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHH
Confidence            46899999999996532  22346789999999999999964  3458999976531          1244678999999


Q ss_pred             HHHhcCCCCCccceeecccCCCceEEEEecccCCCC-----------CCcHHHHHHHHHHHHhcCCCCCCCCCCCCCc--
Q 022304           70 AMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS-----------RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNT--  136 (299)
Q Consensus        70 ~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~-----------~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~--  136 (299)
                      .++...+.++|+++..+.   +..+++||+++|...           +..+..+|+.||++|....+   ++.+....  
T Consensus        90 ~l~~~~~~~vP~~~~~d~---~~~~lvmE~l~g~~~~~~~l~~~~~~~~~~~~l~~~La~lH~~~~~---~~~~~~~~~~  163 (397)
T 2olc_A           90 RQGEHVPHLVPRVFYSDT---EMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSD---YALEPKVKKQ  163 (397)
T ss_dssp             HHHTTCGGGSCCEEEEET---TTTEEEECCCTTSEEHHHHHHTTCCCTTHHHHHHHHHHHHHHHTST---TTSCHHHHHH
T ss_pred             HhhhhCCCCcCeEEEEcC---CccEEEEEeCCCcchHHHHHhcCCcCHHHHHHHHHHHHHHhhhccc---ccCChHHHHH
Confidence            998765678999998763   457899999988421           23478999999999965432   11110000  


Q ss_pred             -cccc--cc-C-----CCCCCCHHH----HHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccC
Q 022304          137 -IGST--PQ-I-----NKWTSNWIE----FYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGD  203 (299)
Q Consensus       137 -~g~~--~~-~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgD  203 (299)
                       ....  +. .     ..+...|..    .+. ..+........   ....+...+.++    ...+.  ..+++|||||
T Consensus       164 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~l~~~~~~l~---~~~~l~~~~~~l----~~~~~--~~~~~L~HGD  233 (397)
T 2olc_A          164 LVKQFTNPELCDITERLVFTDPFFDHDTNDFE-EELRPFVEKLW---NNDSVKIEAAKL----KKSFL--TSAETLIHGD  233 (397)
T ss_dssp             HHHHTCCHHHHHHHHHHTTTGGGTTCTTCCCC-GGGHHHHHHHH---TCHHHHHHHHHH----HHHHH--HBCCEEECSC
T ss_pred             HHHhcCCHHHHHHHHHHhcccchhhhccccCC-HhHHHHHHHhc---cCHHHHHHHHHH----HHHhc--cCCCceeeCC
Confidence             0000  00 0     000000000    000 00111000000   111112222222    22221  1367999999


Q ss_pred             CCCCCeeecCCCCeEEEccc-cccCCchhhhhhh
Q 022304          204 LWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       204 l~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~  236 (299)
                      +|++|||+++++ ++||||+ +.+|+|++|++++
T Consensus       234 l~~~Nil~~~~~-~~lID~e~a~~G~p~~DLa~~  266 (397)
T 2olc_A          234 LHTGSIFASEHE-TKVIDPEFAFYGPIGFDVGQF  266 (397)
T ss_dssp             CSGGGEEECSSC-EEECCCTTCEEECTHHHHHHH
T ss_pred             CCcCcEEEeCCC-eEEEeCcccccCChHHhHHHH
Confidence            999999998665 8999995 7899999999975

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=99.74  E-value=2.3e-17  Score=149.70  Aligned_cols=192  Identities=15%  Similarity=0.146  Sum_probs=113.7

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc---------cEEEEecCCCCcch---------------------HHHHHHHHHHHH
Q 022304           23 HITKICPVGGGCINLASRYGTDAG---------SFFVKTNRSIGPSM---------------------FEGEALGLGAMY   72 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g---------~~vlK~~~~~~~~~---------------------~~~E~~~l~~L~   72 (299)
                      .-.+|++++||.+|.+|+|++.++         +|+||+++......                     ...|..+...++
T Consensus        53 ~~l~v~~lsGG~SN~~y~v~~~~~~~~~~~~~~~~llRi~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~ls  132 (401)
T 3g15_A           53 DEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILA  132 (401)
T ss_dssp             GGCEEEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCccccceEEEEECCCCcccccCCCeEEEEeCCCCccchhhhhHHHHHHHHHHhccCCCCCcchhHHHHHHH
Confidence            446899999999999999997542         69999987531100                     113555666776


Q ss_pred             hcCCCCCccceeecccCCCceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCC
Q 022304           73 ETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINK  145 (299)
Q Consensus        73 ~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~  145 (299)
                      .. + -.|+++....     ...+++|++|..++       .....+++.|+++|++..+   ++.........   .  
T Consensus       133 ~~-g-~~p~l~~~f~-----~g~i~e~i~g~~l~~~~~~~~~~~~~ia~~La~lH~~~~~---~~~~~~~~~~~---~--  197 (401)
T 3g15_A          133 ER-S-LGPKLYGIFP-----QGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMP---FNKEPKWLFGT---M--  197 (401)
T ss_dssp             HT-T-SSCCEEEEET-----TEEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCS---SCCSCCHHHHH---H--
T ss_pred             hC-C-CCCEEEEEEC-----CcEEEEecCCCcCChhhhcCHHHHHHHHHHHHHHhccccc---cccccchHHHH---H--
Confidence            65 2 4688887753     26889999998763       2357899999999998753   11110000000   0  


Q ss_pred             CCCCHHHHHHHh--hhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecC------CCCe
Q 022304          146 WTSNWIEFYAEH--RLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDK------NGEP  217 (299)
Q Consensus       146 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~------~~~~  217 (299)
                        ..|...+...  ............. ...    +...++.++..+.....+.++||||++++|||+.+      ++.+
T Consensus       198 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----l~~~~~~l~~~l~~~~~~~vfcHnDl~~gNil~~~~~~~~~~~~l  270 (401)
T 3g15_A          198 --EKYLKEVLRIKFTEESRIKKLHKLL-SYN----LPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKL  270 (401)
T ss_dssp             --HHHHHHHHHCCCCSHHHHHHHHHHH-TTC----HHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSCCE
T ss_pred             --HHHHHHHHhhccccHHHHHHHHHhh-hHH----HHHHHHHHHHhhhccCCCeeeEEecCCCCeEEEecCcccCcCCeE
Confidence              0111111100  0000001111000 001    12223334444443346789999999999999943      3457


Q ss_pred             EEEccc-cccCCchhhhhhh
Q 022304          218 VILDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       218 ~iID~~-~~~g~~~~Dla~~  236 (299)
                      .+|||+ +.+|+|.+|||..
T Consensus       271 ~vIDwEya~~n~~~fDlan~  290 (401)
T 3g15_A          271 MLIDFEYSSYNYRGFDIGNH  290 (401)
T ss_dssp             EECCCTTCEEEEHHHHHHHH
T ss_pred             EEechHhccCCCchHhHHHH
Confidence            899996 8899999999964

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.10  E-value=3.1e-10  Score=101.37  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=56.2

Q ss_pred             eeee-eeeCCccccceEEEEeCCc-cEEEEecCCC---------Cc----------------chHHHHHHHHHHHHhcCC
Q 022304           24 ITKI-CPVGGGCINLASRYGTDAG-SFFVKTNRSI---------GP----------------SMFEGEALGLGAMYETRT   76 (299)
Q Consensus        24 ~~~~-~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~---------~~----------------~~~~~E~~~l~~L~~~~~   76 (299)
                      +-++ .+||.|..+.||++...+| .+.||+.+..         .+                .....|+..+..|... +
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~-g  174 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEE-G  174 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            3344 5788898999999988777 7888987531         00                0124688888888775 7


Q ss_pred             CCCccceeecccCCCceEEEEecccCCCC
Q 022304           77 IRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        77 ~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +++|+|+....     .+++|||++|.++
T Consensus       175 v~vp~p~~~~~-----~~LVME~i~G~~L  198 (397)
T 4gyi_A          175 FPVPEPIAQSR-----HTIVMSLVDALPM  198 (397)
T ss_dssp             CSCCCEEEEET-----TEEEEECCSCEEG
T ss_pred             CCCCeeeeccC-----ceEEEEecCCccH
Confidence            99999998753     4899999998654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.80  E-value=2.5e-08  Score=84.60  Aligned_cols=68  Identities=22%  Similarity=0.177  Sum_probs=52.1

Q ss_pred             eeeCCccccceEEEEe-CCc-c--EEEEecCCCC---c------------------------chHHHHHHHHHHHHhcCC
Q 022304           28 CPVGGGCINLASRYGT-DAG-S--FFVKTNRSIG---P------------------------SMFEGEALGLGAMYETRT   76 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~-~~g-~--~vlK~~~~~~---~------------------------~~~~~E~~~l~~L~~~~~   76 (299)
                      ..+|.|..+.||++.. .+| .  +++|+.+...   .                        ..+..|+..+..|... +
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~  131 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEA-G  131 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhC-C
Confidence            5788888899999987 444 7  8999864310   0                        1467899999999875 5


Q ss_pred             CCCccceeecccCCCceEEEEeccc
Q 022304           77 IRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        77 ~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      +++|.++...     ..+++|||+.
T Consensus       132 i~~p~~~~~~-----~~~lVmE~~g  151 (258)
T 1zth_A          132 VSVPQPYTYM-----KNVLLMEFIG  151 (258)
T ss_dssp             CCCCCEEEEE-----TTEEEEECCE
T ss_pred             CCCCeEEEcC-----CCEEEEEecC
Confidence            8999999764     4599999994

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=98.79  E-value=2.1e-08  Score=88.66  Aligned_cols=136  Identities=18%  Similarity=0.171  Sum_probs=81.1

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.||.|..+.||++... .| .|.+|+-...     ....+.+|+.+++.|..   -.+.+++..... .+..|+|||
T Consensus        28 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H---pnIV~~~~~~~~-~~~~yiVmE  103 (350)
T 4b9d_A           28 RLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKH---PNIVQYRESFEE-NGSLYIVMD  103 (350)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEEEEE
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCC---CCCCcEEEEEEE-CCEEEEEEe
Confidence            4578999999999999863 34 7888976432     13457789999988853   234556655443 578999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+++       .+.|   +.....    .               .  ..      ..+                ...
T Consensus       104 y~~gg~L-------~~~i---~~~~~~----~---------------~--~e------~~~----------------~~~  130 (350)
T 4b9d_A          104 YCEGGDL-------FKRI---NAQKGV----L---------------F--QE------DQI----------------LDW  130 (350)
T ss_dssp             CCTTCBH-------HHHH---HHTTTC----C---------------C--CH------HHH----------------HHH
T ss_pred             CCCCCcH-------HHHH---HHcCCC----C---------------C--CH------HHH----------------HHH
Confidence            9999743       2222   222210    0               0  00      001                012


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.     ...+||+|++|+|||++.++.+.|+||.
T Consensus       131 ~~qi~~aL~ylH-----~~~IiHRDlKp~NILl~~~g~vKl~DFG  170 (350)
T 4b9d_A          131 FVQICLALKHVH-----DRKILHRDIKSQNIFLTKDGTVQLGDFG  170 (350)
T ss_dssp             HHHHHHHHHHHH-----HTTCEETTCCGGGEEECTTCCEEECSTT
T ss_pred             HHHHHHHHHHHH-----HCCeeeccCCHHHEEECCCCCEEEcccc
Confidence            223333333332     2479999999999999988888999986

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.69  E-value=9.6e-08  Score=82.07  Aligned_cols=70  Identities=16%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             eeeCCccccceEEEEeCCc-cEEEEecCCCC---------------------cchHHHHHHHHHHHHhcCCCCCccceee
Q 022304           28 CPVGGGCINLASRYGTDAG-SFFVKTNRSIG---------------------PSMFEGEALGLGAMYETRTIRAPRPFKV   85 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~---------------------~~~~~~E~~~l~~L~~~~~~~vP~~~~~   85 (299)
                      ..+|.|..+.||++...+| .+++|+.+...                     ...+..|+.+++.|. +  +++|.++..
T Consensus        96 ~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-~--~~v~~~~~~  172 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-G--LAVPKVYAW  172 (282)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-T--SSSCCEEEE
T ss_pred             CEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-C--CCcCeEEec
Confidence            6788888899999988545 89999885321                     123678999999998 3  788887644


Q ss_pred             cccCCCceEEEEecccCCCC
Q 022304           86 GALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        86 ~~~~~~~~~~v~e~l~G~~~  105 (299)
                           +..+++|||++|.++
T Consensus       173 -----~~~~lvmE~~~g~~L  187 (282)
T 1zar_A          173 -----EGNAVLMELIDAKEL  187 (282)
T ss_dssp             -----ETTEEEEECCCCEEG
T ss_pred             -----cceEEEEEecCCCcH
Confidence                 355999999999755

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=98.68  E-value=1.1e-07  Score=83.95  Aligned_cols=135  Identities=14%  Similarity=0.178  Sum_probs=87.9

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC---CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS---IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ..-+++||.|....||++... .| .|.+|+-..   .....+.+|+.+++.|. +  -.+.+++.+... .+..|+|||
T Consensus        76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~-H--pnIV~l~~~~~~-~~~~~ivmE  151 (346)
T 4fih_A           76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQ-H--ENVVEMYNSYLV-GDELWVVME  151 (346)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCC-C--TTBCCEEEEEEE-TTEEEEEEC
T ss_pred             cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEE-CCEEEEEEe
Confidence            445788999999999999864 34 678887642   33466889999999885 3  245556655433 578999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+.+       ...+.   ...     +.                   +.      .+.                ..
T Consensus       152 y~~gg~L-------~~~l~---~~~-----l~-------------------e~------~~~----------------~~  175 (346)
T 4fih_A          152 FLEGGAL-------TDIVT---HTR-----MN-------------------EE------QIA----------------AV  175 (346)
T ss_dssp             CCTTEEH-------HHHHH---HSC-----CC-------------------HH------HHH----------------HH
T ss_pred             CCCCCcH-------HHHHH---cCC-----CC-------------------HH------HHH----------------HH
Confidence            9999733       22222   111     10                   00      011                11


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.     ...+||+|++|+|||++.++.+.|+||.
T Consensus       176 ~~qi~~aL~ylH-----~~~IiHRDlKp~NILl~~~g~vKl~DFG  215 (346)
T 4fih_A          176 CLAVLQALSVLH-----AQGVIHRDIKSDSILLTHDGRVKLSDFG  215 (346)
T ss_dssp             HHHHHHHHHHHH-----HTTEECCCCSGGGEEECTTCCEEECCCT
T ss_pred             HHHHHHHHHHHH-----HCCcccccCCHHHEEECCCCCEEEecCc
Confidence            223333333332     2479999999999999988888999985

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=98.67  E-value=5.8e-08  Score=84.41  Aligned_cols=133  Identities=14%  Similarity=0.043  Sum_probs=84.9

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.+|.|..+.||++... .| .|.+|+-..      .....+.+|+++++.|. +  -.+.+++....+ .+..|++||
T Consensus        37 ~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~l~~~~~~-~~~~yivmE  112 (311)
T 4aw0_A           37 GKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD-H--PFFVKLYFTFQD-DEKLYFGLS  112 (311)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCC-C--TTBCCEEEEEEC-SSEEEEEEC
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCC-C--CCCCeEEEEEEe-CCEEEEEEe
Confidence            467899999999999863 33 788897642      22355788999888774 2  234556654433 578899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+++       ...+.+   ...    +.                 +.        .+                ...
T Consensus       113 y~~gG~L-------~~~i~~---~~~----l~-----------------e~--------~~----------------~~~  137 (311)
T 4aw0_A          113 YAKNGEL-------LKYIRK---IGS----FD-----------------ET--------CT----------------RFY  137 (311)
T ss_dssp             CCTTEEH-------HHHHHH---HSS----CC-----------------HH--------HH----------------HHH
T ss_pred             cCCCCCH-------HHHHHH---cCC----CC-----------------HH--------HH----------------HHH
Confidence            9999743       222322   111    00                 00        01                011


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.     ...+||+|++|+|||++.++.+.|+||.
T Consensus       138 ~~qi~~al~ylH-----~~~IiHRDlKPeNILl~~~g~vKl~DFG  177 (311)
T 4aw0_A          138 TAEIVSALEYLH-----GKGIIHRDLKPENILLNEDMHIQITDFG  177 (311)
T ss_dssp             HHHHHHHHHHHH-----HTTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             HHHHHHHHHHHH-----HCCCccCCCCHHHeEEcCCCCEEEEEcC
Confidence            223333333332     2479999999999999988888999985

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=98.66  E-value=1.8e-07  Score=84.72  Aligned_cols=135  Identities=15%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC---CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS---IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ..-++.||.|..+.||++... .| .|.+|+-..   .....+.+|+.+++.|..   -.+.+++..... .+..|+|||
T Consensus       153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H---pnIV~l~~~~~~-~~~~~iVmE  228 (423)
T 4fie_A          153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQH---ENVVEMYNSYLV-GDELWVVME  228 (423)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEEEEE
T ss_pred             cEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCC---CCCCceEEEEEE-CCEEEEEEe
Confidence            445788999999999999864 34 677887642   234668899999998853   235556654433 578899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+.+       ...+.   ...     +                   ..      ..+.                ..
T Consensus       229 y~~gG~L-------~~~i~---~~~-----l-------------------~e------~~~~----------------~~  252 (423)
T 4fie_A          229 FLEGGAL-------TDIVT---HTR-----M-------------------NE------EQIA----------------AV  252 (423)
T ss_dssp             CCTTEEH-------HHHHH---HSC-----C-------------------CH------HHHH----------------HH
T ss_pred             CCCCCcH-------HHHHh---ccC-----C-------------------CH------HHHH----------------HH
Confidence            9999743       22221   111     0                   00      0011                11


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+..     ..+||+|++|+|||++.++.+.|+||.
T Consensus       253 ~~qil~aL~ylH~-----~~IiHRDiKp~NILl~~~g~vKl~DFG  292 (423)
T 4fie_A          253 CLAVLQALSVLHA-----QGVIHRDIKSDSILLTHDGRVKLSDFG  292 (423)
T ss_dssp             HHHHHHHHHHHHH-----TTEECCCCSTTTEEECTTCCEEECCCT
T ss_pred             HHHHHHHHHHHHH-----CCeecccCCHHHEEEcCCCCEEEecCc
Confidence            2233333343322     479999999999999988888999985

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=98.64  E-value=1.3e-07  Score=80.81  Aligned_cols=132  Identities=13%  Similarity=0.077  Sum_probs=81.0

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++... .| .|.+|+-...      ....+.+|+.+++.|. +  -.+.+++....+ .+..|++||
T Consensus        18 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~-H--pnIv~~~~~~~~-~~~~~ivmE   93 (275)
T 3hyh_A           18 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLR-H--PHIIKLYDVIKS-KDEIIMVIE   93 (275)
T ss_dssp             EEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCC-C--TTBCCEEEEEEC-SSEEEEEEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCC-C--CCCCeEEEEEEE-CCEEEEEEe
Confidence            467899999999999863 34 7888976421      2345788999998885 3  245566655443 578899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|.        +-..+   .+...    +.                 ..        ..                ...
T Consensus        94 y~~g~--------L~~~l---~~~~~----l~-----------------e~--------~~----------------~~~  117 (275)
T 3hyh_A           94 YAGNE--------LFDYI---VQRDK----MS-----------------EQ--------EA----------------RRF  117 (275)
T ss_dssp             CCCEE--------HHHHH---HHSCS----CC-----------------HH--------HH----------------HHH
T ss_pred             CCCCC--------HHHHH---HHcCC----CC-----------------HH--------HH----------------HHH
Confidence            99652        11222   12110    00                 00        00                112


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+..     ..++|+|++|+|||+++++.+.|+||.
T Consensus       118 ~~qi~~al~ylH~-----~~IiHRDiKP~NILl~~~~~vkl~DFG  157 (275)
T 3hyh_A          118 FQQIISAVEYCHR-----HKIVHRDLKPENLLLDEHLNVKIADFG  157 (275)
T ss_dssp             HHHHHHHHHHHHH-----TTCCCCCCCTTTEEECTTCCEEECCSS
T ss_pred             HHHHHHHHHHHHH-----CCcccccCChHHeEECCCCCEEEeecC
Confidence            2333333443322     479999999999999988888999985

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.61  E-value=4.4e-08  Score=92.41  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 022304           59 SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIG  138 (299)
Q Consensus        59 ~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g  138 (299)
                      ..+.+|+++|+.+..+  ..+|+++.+.+. ++..|+||||++|+++       .+.|.+    ..+   +         
T Consensus       286 ~~~~~E~~~l~~~~~~--~~i~~~~~~~ed-~~~~yLVMEyv~G~~L-------~d~i~~----~~~---l---------  339 (569)
T 4azs_A          286 YELHNEIKFLTQPPAG--FDAPAVLAHGEN-AQSGWLVMEKLPGRLL-------SDMLAA----GEE---I---------  339 (569)
T ss_dssp             HHHHHHHHHHHSCCTT--CCCCCEEEEEEC-SSEEEEEEECCCSEEH-------HHHHHT----TCC---C---------
T ss_pred             HHHHHHHHHHHhcCCC--CCeeEEEEEEEE-CCEEEEEEecCCCCcH-------HHHHHh----CCC---C---------
Confidence            3477899988888653  679999998876 6789999999999843       223321    100   0         


Q ss_pred             ccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeE
Q 022304          139 STPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPV  218 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~  218 (299)
                                +-      .++                   +.++++.+..+.     ..++||+|++|+|||+++++.+.
T Consensus       340 ----------~~------~~I-------------------~~QIl~AL~ylH-----~~GIIHRDIKPeNILL~~dg~vK  379 (569)
T 4azs_A          340 ----------DR------EKI-------------------LGSLLRSLAALE-----KQGFWHDDVRPWNVMVDARQHAR  379 (569)
T ss_dssp             ----------CH------HHH-------------------HHHHHHHHHHHH-----HTTCEESCCCGGGEEECTTSCEE
T ss_pred             ----------CH------HHH-------------------HHHHHHHHHHHH-----HCCceeccCchHhEEECCCCCEE
Confidence                      00      011                   122333333332     25899999999999999998899


Q ss_pred             EEccc
Q 022304          219 ILDPA  223 (299)
Q Consensus       219 iID~~  223 (299)
                      |+||.
T Consensus       380 L~DFG  384 (569)
T 4azs_A          380 LIDFG  384 (569)
T ss_dssp             ECCCT
T ss_pred             Eeecc
Confidence            99986

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=98.59  E-value=1.2e-07  Score=83.45  Aligned_cols=131  Identities=21%  Similarity=0.188  Sum_probs=81.0

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCC
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      .++||.|....||++... .| .|.+|+-....  ...+|+.+++.|. |  -.+.+++..... .+..|++|||++|+.
T Consensus        63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~--~~~~E~~il~~l~-H--pnIV~l~~~~~~-~~~~~ivmEy~~gg~  136 (336)
T 4g3f_A           63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV--FRVEELVACAGLS-S--PRIVPLYGAVRE-GPWVNIFMELLEGGS  136 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTT--CCTHHHHTTTTCC-C--TTBCCEEEEEEE-TTEEEEEECCCTTCB
T ss_pred             CcEeccCCCeEEEEEEECCCCCEEEEEEECHHH--hHHHHHHHHHhCC-C--CCCCcEEEEEEE-CCEEEEEEeccCCCc
Confidence            456899999999999863 34 78889876422  2346887776664 2  234455554433 568899999999974


Q ss_pred             CCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 022304          105 SRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMK  184 (299)
Q Consensus       105 ~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (299)
                      +       ...|.+   ...    +                   .+.      ..                ...+.+++.
T Consensus       137 L-------~~~l~~---~~~----l-------------------~e~------~~----------------~~~~~qi~~  161 (336)
T 4g3f_A          137 L-------GQLIKQ---MGC----L-------------------PED------RA----------------LYYLGQALE  161 (336)
T ss_dssp             H-------HHHHHH---HSS----C-------------------CHH------HH----------------HHHHHHHHH
T ss_pred             H-------HHHHHH---cCC----C-------------------CHH------HH----------------HHHHHHHHH
Confidence            3       233322   111    0                   000      01                112223334


Q ss_pred             HHhccccCCCCCcceeccCCCCCCeeecCCC-CeEEEccc
Q 022304          185 NLAPLFEGVNVEPCLLHGDLWSGNISSDKNG-EPVILDPA  223 (299)
Q Consensus       185 ~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~-~~~iID~~  223 (299)
                      .+..+.     ...+||+|++|+|||++.++ .+.|+||.
T Consensus       162 aL~ylH-----~~~IiHRDlKp~NILl~~~g~~vKl~DFG  196 (336)
T 4g3f_A          162 GLEYLH-----TRRILHGDVKADNVLLSSDGSRAALCDFG  196 (336)
T ss_dssp             HHHHHH-----TTTEECSCCCGGGEEECTTSCCEEECCCT
T ss_pred             HHHHHH-----HCCceecccCHHHEEEeCCCCEEEEeeCC
Confidence            444333     24799999999999998776 47899985

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=98.55  E-value=4.8e-07  Score=80.36  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             eeeeCCccccceEEEE------eCC-ccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYG------TDA-GSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~------~~~-g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.+|.|..+.||++.      ... ..+++|+........+..|...++.|.....-.+.+++..... .+..+++|||
T Consensus        70 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~-~~~~~lv~e~  148 (365)
T 3e7e_A           70 HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF-QNGSVLVGEL  148 (365)
T ss_dssp             EEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC-SSCEEEEECC
T ss_pred             EEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeec-CCCcEEEEec
Confidence            3568888889999993      333 3789999876555667788888888864211234444444332 5678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus       149 ~~~g~L  154 (365)
T 3e7e_A          149 YSYGTL  154 (365)
T ss_dssp             CCSCBH
T ss_pred             cCCCcH
Confidence            998743

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=98.55  E-value=5e-07  Score=80.37  Aligned_cols=76  Identities=13%  Similarity=0.101  Sum_probs=53.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      .+.++.|..+.||++... +| .++||+.....           ...+..|..+++.+..+  -.+++++..... .+..
T Consensus        99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h--p~iv~~~~~~~~-~~~~  175 (365)
T 2y7j_A           99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGH--PHIITLIDSYES-SSFM  175 (365)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTC--TTBCCEEEEEEB-SSEE
T ss_pred             ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCC--CCEeEEEEEEee-CCEE
Confidence            367888888999999874 34 89999875421           23456788888888554  245556655433 5688


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++|||++|.++
T Consensus       176 ~lv~e~~~g~~L  187 (365)
T 2y7j_A          176 FLVFDLMRKGEL  187 (365)
T ss_dssp             EEEECCCTTCBH
T ss_pred             EEEEEeCCCCcH
Confidence            999999999743

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=98.51  E-value=8.8e-07  Score=74.86  Aligned_cols=78  Identities=19%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-++.+|.|..+.||++...++ .+++|+....  ....+..|+..+..|..   -.+++++..... .+..+++||+
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~   84 (268)
T 3sxs_A            9 EITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSH---PKLVKFYGVCSK-EYPIYIVTEY   84 (268)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCC---TTBCCEEEEECS-SSSEEEEEEC
T ss_pred             heeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCC---CCEeeEEEEEcc-CCceEEEEEc
Confidence            344567888898899999987766 7889987643  23557789988888852   345666665543 5678999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|..
T Consensus        85 ~~~~~   89 (268)
T 3sxs_A           85 ISNGC   89 (268)
T ss_dssp             CTTCB
T ss_pred             cCCCc
Confidence            99863

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=98.50  E-value=2.8e-07  Score=82.02  Aligned_cols=93  Identities=12%  Similarity=-0.033  Sum_probs=58.1

Q ss_pred             chHHHHHHhc-CCCcceeeeeeeCCccccceEEEEeC----Cc-cEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCcc
Q 022304            9 DPIREWILSE-GKATHITKICPVGGGCINLASRYGTD----AG-SFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPR   81 (299)
Q Consensus         9 ~~i~~~l~~~-~~~~~~~~~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~   81 (299)
                      +++.+..... .....-.=.+.+|.|..+.||+++..    .+ .+.+|.-.. .....+.+|..+++.+..+  -.+.+
T Consensus         7 ~~i~~l~~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h--~nIv~   84 (361)
T 4f9c_A            7 KDIEKLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQ--DNVMG   84 (361)
T ss_dssp             HHHHHHHHHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSB--TTBCC
T ss_pred             HHHHHHHHhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCC--CCCce
Confidence            4555555443 11111122467899999999998642    23 678886543 3345577899888887554  23445


Q ss_pred             ceeecccCCCceEEEEecccCCC
Q 022304           82 PFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        82 ~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      ++..-.. .+..|++|||++|..
T Consensus        85 l~~~~~~-~~~~~lvmE~~~g~~  106 (361)
T 4f9c_A           85 VKYCFRK-NDHVVIAMPYLEHES  106 (361)
T ss_dssp             CSEEEEE-TTEEEEEEECCCCCC
T ss_pred             EEEEEEE-CCEEEEEEeCCCccc
Confidence            5544332 578899999999864

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=98.47  E-value=8.4e-08  Score=83.23  Aligned_cols=134  Identities=18%  Similarity=0.091  Sum_probs=77.1

Q ss_pred             eeeeeCCccccceEEEEeC----Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           26 KICPVGGGCINLASRYGTD----AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      =++.+|.|..+.||++...    .+ .|.+|+-...     ....+..|+++++.|. +  -.+.+++....+ .+..|+
T Consensus        28 i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~l~~~~~~-~~~~~i  103 (304)
T 3ubd_A           28 LLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVN-H--PFIVKLHYAFQT-EGKLYL  103 (304)
T ss_dssp             EEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCC-C--TTEECEEEEEEE-TTEEEE
T ss_pred             EEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCC-C--CCCCeEEEEEEE-CCEEEE
Confidence            3577899999999998742    22 5788876431     1234667877666553 2  134444544333 578999


Q ss_pred             EEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHH
Q 022304           96 IMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTI  175 (299)
Q Consensus        96 v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (299)
                      +|||++|+++.       ..+.   +...    +.                 .        ..+.               
T Consensus       104 vmEy~~gg~L~-------~~l~---~~~~----l~-----------------e--------~~~~---------------  129 (304)
T 3ubd_A          104 ILDFLRGGDLF-------TRLS---KEVM----FT-----------------E--------EDVK---------------  129 (304)
T ss_dssp             EECCCTTCEEH-------HHHH---HHCC----CC-----------------H--------HHHH---------------
T ss_pred             EEEcCCCCCHH-------HHHH---hcCC----CC-----------------H--------HHHH---------------
Confidence            99999998552       1222   1111    00                 0        0010               


Q ss_pred             HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          176 YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       176 ~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                       ..+.+++..+..+.     ...+||+|++|+|||++.++.+.|+||.
T Consensus       130 -~~~~qi~~aL~ylH-----~~~IiHRDlKp~NILl~~~g~vKl~DFG  171 (304)
T 3ubd_A          130 -FYLAELALALDHLH-----SLGIIYRDLKPENILLDEEGHIKLTDFG  171 (304)
T ss_dssp             -HHHHHHHHHHHHHH-----HTTCCCSSCCGGGEEECTTSCEEEESSE
T ss_pred             -HHHHHHHHHHHHHH-----HCCCcCCCCCHHHeEEcCCCCEEecccc
Confidence             11223333333332     2479999999999999988888999985

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=98.46  E-value=8.8e-07  Score=75.51  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=53.9

Q ss_pred             eeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           24 ITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..-++.++.|..+.||+....++ .+++|+....  ....+..|+.++..|..   -.+++++..... .+..+++||++
T Consensus        26 y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~  101 (283)
T 3gen_A           26 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSH---EKLVQLYGVCTK-QRPIFIITEYM  101 (283)
T ss_dssp             EEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCC---TTBCCEEEEECS-SSSEEEEECCC
T ss_pred             HHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCC---CCEeeEEEEEec-CCCeEEEEecc
Confidence            44467889998899999987766 7899988753  23557788888877752   345666665443 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       102 ~~~~L  106 (283)
T 3gen_A          102 ANGCL  106 (283)
T ss_dssp             TTCBH
T ss_pred             CCCcH
Confidence            88643

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.45  E-value=1.9e-06  Score=73.85  Aligned_cols=77  Identities=9%  Similarity=0.053  Sum_probs=56.8

Q ss_pred             ceeeeeeeCCccccceEEEEe-C-CccEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGT-D-AGSFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-~-~g~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-.+.++.|..+.||++.. . +..+++|+... .....+..|...++.|..+  ..+|+++..... ....+++||+
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~--~~i~~~~~~~~~-~~~~~lv~e~   87 (298)
T 1csn_A           11 HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGC--TGIPNVYYFGQE-GLHNVLVIDL   87 (298)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTC--TTCCCEEEEEEE-TTEEEEEEEC
T ss_pred             ceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcC--CCCCeEEeecCC-CceeEEEEEe
Confidence            344567788888899999985 3 33889997753 3345688999999888654  357888876543 5678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      + |.
T Consensus        88 ~-~~   90 (298)
T 1csn_A           88 L-GP   90 (298)
T ss_dssp             C-CC
T ss_pred             c-CC
Confidence            9 54

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=98.44  E-value=1.5e-06  Score=75.31  Aligned_cols=76  Identities=14%  Similarity=0.009  Sum_probs=45.8

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHH--HHHhcCCCCCccceeecccCC---CceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLG--AMYETRTIRAPRPFKVGALPT---GGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~--~L~~~~~~~vP~~~~~~~~~~---~~~~~v~e~l~  101 (299)
                      -+.+|.|....||+.+..+..+.||+-..........|.++..  .|. |  -.+.+++.......   ...++||||++
T Consensus         8 ~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~-H--pNIv~l~g~~~~~~~~~~~~~lV~Ey~~   84 (303)
T 3hmm_A            8 QESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLR-H--ENILGFIAADNKDNGTWTQLWLVSDYHE   84 (303)
T ss_dssp             EEEEEECSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCC-C--TTBCCEEEEEEEECSSSEEEEEEEECCT
T ss_pred             EEEEeeCCCeEEEEEEECCEEEEEEEECccchhhHHHHHHHHHHhcCC-C--CCCCcEEEEEEecCCCceEEEEEecCCC
Confidence            3678999999999998766688899876432222333443332  221 1  12344444433211   24689999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |+.+
T Consensus        85 ~gsL   88 (303)
T 3hmm_A           85 HGSL   88 (303)
T ss_dssp             TCBH
T ss_pred             CCcH
Confidence            9743

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=98.44  E-value=1.4e-06  Score=76.25  Aligned_cols=77  Identities=9%  Similarity=-0.035  Sum_probs=55.9

Q ss_pred             ceeeeeeeCCccccceEEEEe-CCc-cEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGT-DAG-SFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-.+.+|.|..+.||++.. ..+ .+++|+... .....+..|+.+++.|..+  -.+++++..... .+..+++||+
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h--~~i~~~~~~~~~-~~~~~lv~e~   86 (330)
T 2izr_A           10 NFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSG--DGIPQVYYFGPC-GKYNAMVLEL   86 (330)
T ss_dssp             TEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSC--TTSCCEEEEEEE-TTEEEEEEEC
T ss_pred             CeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCC--CCCCEEEEEEec-CCccEEEEEe
Confidence            444567889998899999985 333 789998764 2345688999999999654  356777766544 5678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      + |.
T Consensus        87 ~-~~   89 (330)
T 2izr_A           87 L-GP   89 (330)
T ss_dssp             C-CC
T ss_pred             C-CC
Confidence            9 64

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.44  E-value=1.6e-06  Score=74.76  Aligned_cols=74  Identities=11%  Similarity=0.073  Sum_probs=53.9

Q ss_pred             eeeCCccccceEEEEeCCccEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTDAGSFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +.+|.|..+.||+....+..+++|.....       ....+..|+.+++.|..   -.+++++..... .+..+++|+++
T Consensus        37 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~  112 (307)
T 2nru_A           37 NKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH---ENLVELLGFSSD-GDDLCLVYVYM  112 (307)
T ss_dssp             CEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC---TTBCCEEEEECS-SSSCEEEEECC
T ss_pred             CccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC---CCeEEEEEEEec-CCceEEEEEec
Confidence            67888888999999877668999977531       12456788888888842   346667765543 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       113 ~~~~L  117 (307)
T 2nru_A          113 PNGSL  117 (307)
T ss_dssp             TTCBH
T ss_pred             CCCcH
Confidence            98643

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=98.44  E-value=4e-07  Score=78.47  Aligned_cols=135  Identities=17%  Similarity=0.105  Sum_probs=80.7

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEEEE
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~v~   97 (299)
                      +.+|.|..+.||+.... .+ .+.+|.-...     ....+.+|+.+++.|. |  -.+.+++.+....   .+..|++|
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~-H--pnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ-H--PNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCC-C--TTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCC-C--CCCCcEEEEEeeccCCCcEEEEEE
Confidence            35899999999998764 33 6777765321     1345778998888875 2  2345555543221   23579999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      ||++|+.+       ...|.+   ...    +                   .+..      +                ..
T Consensus       109 Ey~~gg~L-------~~~l~~---~~~----l-------------------~~~~------~----------------~~  133 (290)
T 3fpq_A          109 ELMTSGTL-------KTYLKR---FKV----M-------------------KIKV------L----------------RS  133 (290)
T ss_dssp             ECCCSCBH-------HHHHHH---HSS----C-------------------CHHH------H----------------HH
T ss_pred             eCCCCCCH-------HHHHHh---cCC----C-------------------CHHH------H----------------HH
Confidence            99999743       223322   111    0                   0000      0                11


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecC-CCCeEEEccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDK-NGEPVILDPA  223 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~-~~~~~iID~~  223 (299)
                      .+.+++..+..+..   ..+.+||+|++|+|||+++ ++.+.|+||.
T Consensus       134 ~~~qi~~aL~ylH~---~~~~IiHRDlKp~NILl~~~~g~vKl~DFG  177 (290)
T 3fpq_A          134 WCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLG  177 (290)
T ss_dssp             HHHHHHHHHHHHHT---SSSCCCCCCCCGGGEEESSTTSCEEECCTT
T ss_pred             HHHHHHHHHHHHHH---CCCCEEecccChhheeEECCCCCEEEEeCc
Confidence            22233333443332   2456999999999999974 6678899985

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=98.43  E-value=1.7e-06  Score=75.13  Aligned_cols=134  Identities=16%  Similarity=0.099  Sum_probs=82.9

Q ss_pred             eeeeeeCCccccceEEEEeCCccEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           25 TKICPVGGGCINLASRYGTDAGSFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .=.+.+|.|....||+.+.. +.+.+|+-...  .   ...+.+|+.+++.|..   -.+.+++.+..  ++..++||||
T Consensus        39 ~l~~~iG~G~fG~Vy~~~~~-~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~H---pNIV~l~g~~~--~~~~~iVmEy  112 (307)
T 3omv_A           39 MLSTRIGSGSFGTVYKGKWH-GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRH---VNILLFMGYMT--KDNLAIVTQW  112 (307)
T ss_dssp             CEEEECCCCSSSEEEEEESS-SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCC---TTBCCEEEEEC--SSSCEEEEEC
T ss_pred             EEeeEEeeCCCcEEEEEEEC-CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEE--CCeEEEEEEc
Confidence            33577999999999999754 46778876431  1   2446788888877743   23445555543  4678999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          100 IEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       100 l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                      ++|+.+       -+   .||....+                      -+|....                      ..+
T Consensus       113 ~~gGsL-------~~---~l~~~~~~----------------------l~~~~~~----------------------~i~  138 (307)
T 3omv_A          113 CEGSSL-------YK---HLHVQETK----------------------FQMFQLI----------------------DIA  138 (307)
T ss_dssp             CSSCBH-------HH---HHHTSCCC----------------------CCHHHHH----------------------HHH
T ss_pred             CCCCCH-------HH---HHhhcCCC----------------------CCHHHHH----------------------HHH
Confidence            999743       11   23332210                      0221110                      111


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+++..+..+..     ..+||+|++|.|||+++++.+.|.||.
T Consensus       139 ~qia~gL~yLH~-----~~IiHRDlKp~NILl~~~~~~Ki~DFG  177 (307)
T 3omv_A          139 RQTAQGMDYLHA-----KNIIHRDMKSNNIFLHEGLTVKIGDFG  177 (307)
T ss_dssp             HHHHHHHHHHHH-----TTCBCSCCCSSSEEEETTEEEEECCCS
T ss_pred             HHHHHHHHHHHH-----CCccCCccCHHHEEECCCCcEEEeecc
Confidence            223333332222     369999999999999988878899985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=98.43  E-value=1.7e-06  Score=75.38  Aligned_cols=79  Identities=10%  Similarity=0.010  Sum_probs=58.0

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEecc
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEFI  100 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~l  100 (299)
                      ..-++.+|.|..+.||++... ++ .+++|+........+..|..+++.|..+  -.+++++...... ....+++|+++
T Consensus        38 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~--~~i~~~~~~~~~~~~~~~~lv~e~~  115 (330)
T 3nsz_A           38 YQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGG--PNIITLADIVKDPVSRTPALVFEHV  115 (330)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTS--TTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             eEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCC--CCEEEeeeeeccCCCCceEEEEecc
Confidence            334678898989999999753 33 8899998765566788999999999754  2455666544332 35689999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|..
T Consensus       116 ~~~~  119 (330)
T 3nsz_A          116 NNTD  119 (330)
T ss_dssp             CCCC
T ss_pred             Cchh
Confidence            9864

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.41  E-value=8.1e-07  Score=75.20  Aligned_cols=79  Identities=19%  Similarity=0.133  Sum_probs=57.0

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-++.++.|..+.||++...++ .+++|.....  ....+.+|..+++.+..   -.+++++..... .+..+++||+
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~   86 (269)
T 4hcu_A           11 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH---PKLVQLYGVCLE-QAPICLVFEF   86 (269)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCC---TTBCCEEEEECS-SSSEEEEEEC
T ss_pred             hceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCC---CCEeeEEEEEec-CCceEEEEEe
Confidence            344567889898999999987544 7899987653  23557789988888752   345666665443 4678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        87 ~~~~~L   92 (269)
T 4hcu_A           87 MEHGCL   92 (269)
T ss_dssp             CTTCBH
T ss_pred             CCCCcH
Confidence            998743

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=98.41  E-value=2.5e-06  Score=74.00  Aligned_cols=76  Identities=14%  Similarity=0.044  Sum_probs=54.7

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      -.+.+|.|..+.||++...+..+.+|+.....     ...+.+|+.+++.|..   -.+++++..... .+..+++||++
T Consensus        41 i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~e~~  116 (309)
T 3p86_A           41 IKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRH---PNIVLFMGAVTQ-PPNLSIVTEYL  116 (309)
T ss_dssp             EEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCC---TTBCCEEEEECS-TTCCEEEEECC
T ss_pred             eeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEEE-CCceEEEEecC
Confidence            35778989889999998776689999876432     1345678888888852   345666655433 46789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       117 ~~~~L  121 (309)
T 3p86_A          117 SRGSL  121 (309)
T ss_dssp             TTCBH
T ss_pred             CCCcH
Confidence            98743

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.39  E-value=5.5e-07  Score=77.95  Aligned_cols=78  Identities=17%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             eeeeeeeCCccccceEEEEeC------Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           24 ITKICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      ++=.+.+|.|....||+.+..      ++ .+.+|.-....   ...+.+|+++++.|. |  -.+-+++.+... .+..
T Consensus        15 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~-H--pnIV~l~g~~~~-~~~~   90 (299)
T 4asz_A           15 IVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQ-H--EHIVKFYGVCVE-GDPL   90 (299)
T ss_dssp             EEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEECS-SSSE
T ss_pred             eEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCC-C--CCCccEEEEEee-CCEE
Confidence            444578999999999998742      23 57788765432   345778988887774 2  245556665543 5678


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++|||++|+++
T Consensus        91 ~lV~Ey~~~G~L  102 (299)
T 4asz_A           91 IMVFEYMKHGDL  102 (299)
T ss_dssp             EEEEECCTTCBH
T ss_pred             EEEEEcCCCCcH
Confidence            999999999754

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=98.38  E-value=2.4e-06  Score=73.56  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             cchHHHHHHhc-CCC---cceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC---CCcchHHHHHHHHHHHHhcCCCC
Q 022304            8 DDPIREWILSE-GKA---THITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS---IGPSMFEGEALGLGAMYETRTIR   78 (299)
Q Consensus         8 ~~~i~~~l~~~-~~~---~~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~   78 (299)
                      .+++.+-+... ..+   ..-.-++.+|.|..+.||++... .+ .+++|....   .....+..|..+++.+..   -.
T Consensus         2 ~e~~~~~l~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~h---p~   78 (297)
T 3fxz_A            2 DEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN---PN   78 (297)
T ss_dssp             HHHHHHHHHHHSBSSCGGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCC---TT
T ss_pred             hHHHHhhhhcccCcCChhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCC---CC
Confidence            34555555544 222   23344678999999999999753 33 788887642   234556788888777642   34


Q ss_pred             CccceeecccCCCceEEEEecccCCCC
Q 022304           79 APRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        79 vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +++++..... .+..+++|||++|..+
T Consensus        79 iv~~~~~~~~-~~~~~lv~e~~~~~~L  104 (297)
T 3fxz_A           79 IVNYLDSYLV-GDELWVVMEYLAGGSL  104 (297)
T ss_dssp             BCCEEEEEEE-TTEEEEEEECCTTCBH
T ss_pred             CCeEeEEEEE-CCEEEEEEECCCCCCH
Confidence            5666655433 5678999999998743

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=98.37  E-value=1e-06  Score=74.95  Aligned_cols=80  Identities=19%  Similarity=0.177  Sum_probs=53.6

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ...-++.++.|..+.||+++..+..+++|+.... ....+..|...++.|..   -.+.+++.......+..+++||+++
T Consensus        22 ~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~lv~e~~~   98 (278)
T 1byg_A           22 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRH---SNLVQLLGVIVEEKGGLYIVTEYMA   98 (278)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCC---TTBCCEEEEECCC--CCEEEECCCT
T ss_pred             hceEEeEEecCCCceEEEEEEcCCEEEEEEecchhHHHHHHHHHHHHHhCCC---CCEeeEEEEEEcCCCceEEEEecCC
Confidence            3444677888888999999877668999988753 34456778887777642   2345555543221357899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |.++
T Consensus        99 ~~~L  102 (278)
T 1byg_A           99 KGSL  102 (278)
T ss_dssp             TEEH
T ss_pred             CCCH
Confidence            8633

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=98.35  E-value=2e-06  Score=76.26  Aligned_cols=78  Identities=17%  Similarity=0.081  Sum_probs=53.9

Q ss_pred             eeeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++.... + .|.+|+...      .....+..|..++..+..+  -.+++++..... .+..|++
T Consensus        26 ~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~h--p~Iv~l~~~~~~-~~~~~lv  102 (353)
T 3txo_A           26 EFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNH--PFLTQLFCCFQT-PDRLFFV  102 (353)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTC--TTBCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCC--CceeeEEEEEEe-CCEEEEE
Confidence            345778889889999998643 3 788898653      1224456788888777544  345666665443 5688999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus       103 ~E~~~gg~L  111 (353)
T 3txo_A          103 MEFVNGGDL  111 (353)
T ss_dssp             EECCCSCBH
T ss_pred             EeCCCCCcH
Confidence            999998743

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.33  E-value=1e-06  Score=77.31  Aligned_cols=75  Identities=17%  Similarity=0.132  Sum_probs=52.6

Q ss_pred             eeeeCCccccceEEEEeC------Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .+.+|.|....||+.+..      ++ .+.+|.-....   ...+.+|++++..|. |  -.+-+++.+... .+..++|
T Consensus        46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~-H--pnIV~l~g~~~~-~~~~~lV  121 (329)
T 4aoj_A           46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQ-H--QHIVRFFGVCTE-GRPLLMV  121 (329)
T ss_dssp             EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEECS-SSSEEEE
T ss_pred             EEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEE-CCEEEEE
Confidence            467999999999998743      23 57788775432   345778998888774 3  245556665543 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|+.+
T Consensus       122 ~Ey~~~G~L  130 (329)
T 4aoj_A          122 FEYMRHGDL  130 (329)
T ss_dssp             EECCTTCBH
T ss_pred             EEcCCCCcH
Confidence            999999754

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=98.33  E-value=3.2e-06  Score=73.30  Aligned_cols=76  Identities=20%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-.-++.+|.|..+.||++...++ .+++|......     ...+.+|..+++.|..   -.+++++..... .+..+++
T Consensus        22 ~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv   97 (311)
T 3niz_A           22 KYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHH---PNIVSLIDVIHS-ERCLTLV   97 (311)
T ss_dssp             EEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCC---TTBCCEEEEECC-SSCEEEE
T ss_pred             hhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCC---CCEeeeeeEEcc-CCEEEEE
Confidence            444568889999999999988656 68889775321     2346688888888842   245666665433 4678999


Q ss_pred             EecccC
Q 022304           97 MEFIEF  102 (299)
Q Consensus        97 ~e~l~G  102 (299)
                      ||+++|
T Consensus        98 ~e~~~~  103 (311)
T 3niz_A           98 FEFMEK  103 (311)
T ss_dssp             EECCSE
T ss_pred             EcCCCC
Confidence            999987

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=98.32  E-value=3.3e-06  Score=73.82  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             eeeeeeeCCccccceEEEEeC----Cc-cEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           24 ITKICPVGGGCINLASRYGTD----AG-SFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ..-++.+|.|..+.||++...    .+ .+.+|+....       ....+..|..+++.|..   -.+++++..... .+
T Consensus        19 y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~   94 (327)
T 3a62_A           19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKH---PFIVDLIYAFQT-GG   94 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCC---TTBCCEEEEEEC-SS
T ss_pred             eEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCC---CCccceeEEEEc-CC
Confidence            344577888888999999862    33 6888987532       12345678888887752   245666655443 56


Q ss_pred             ceEEEEecccCCC
Q 022304           92 GSYIIMEFIEFGS  104 (299)
Q Consensus        92 ~~~~v~e~l~G~~  104 (299)
                      ..+++||+++|..
T Consensus        95 ~~~lv~e~~~~~~  107 (327)
T 3a62_A           95 KLYLILEYLSGGE  107 (327)
T ss_dssp             CEEEEEECCTTEE
T ss_pred             EEEEEEeCCCCCc
Confidence            8899999999863

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=98.32  E-value=4e-06  Score=75.50  Aligned_cols=78  Identities=6%  Similarity=0.011  Sum_probs=54.1

Q ss_pred             eeeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++.... + .|.+|+...      .....+..|..++..+..+  -.+++++..... .+..+++
T Consensus        55 ~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~h--p~Iv~l~~~~~~-~~~~~lV  131 (396)
T 4dc2_A           55 DLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNH--PFLVGLHSCFQT-ESRLFFV  131 (396)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTC--TTBCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCC--CCcCeeEEEEEE-CCEEEEE
Confidence            345778889889999998753 3 688887642      1234577889888877554  245566655433 5688999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus       132 ~E~~~gg~L  140 (396)
T 4dc2_A          132 IEYVNGGDL  140 (396)
T ss_dssp             EECCTTCBH
T ss_pred             EEcCCCCcH
Confidence            999999743

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=98.32  E-value=1.8e-06  Score=75.21  Aligned_cols=142  Identities=18%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             eeeeeeCCccccceEEEEeCCc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           25 TKICPVGGGCINLASRYGTDAG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .-.+.+|.|..+.||++...++ .+++|+....    ....+..|..+++.+..   -.+++++..... .+..+++|++
T Consensus        33 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~  108 (326)
T 3uim_A           33 SNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVH---RNLLRLRGFCMT-PTERLLVYPY  108 (326)
T ss_dssp             CSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCC---TTBCCCCEEECC-SSCCEEEEEC
T ss_pred             ccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccC---CCccceEEEEec-CCceEEEEEe
Confidence            3456788888899999986555 7889987542    22356778877666542   245566655443 4677999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          100 IEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       100 l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                      ++|..+       ...+   +.....    .               ...+|....                      ..+
T Consensus       109 ~~~~~L-------~~~l---~~~~~~----~---------------~~~~~~~~~----------------------~i~  137 (326)
T 3uim_A          109 MANGSV-------ASCL---RERPES----Q---------------PPLDWPKRQ----------------------RIA  137 (326)
T ss_dssp             CTTCBH-------HHHH---HCCSTT----C---------------CCCCHHHHH----------------------HHH
T ss_pred             ccCCCH-------HHHH---Hhcccc----C---------------CCCCHHHHH----------------------HHH
Confidence            998743       2222   121110    0               001121110                      111


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+++..+..+..  ...+.++|+|++|+|||+++++.+.|+|+.
T Consensus       138 ~~i~~~l~~lH~--~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg  179 (326)
T 3uim_A          138 LGSARGLAYLHD--HCDPKIIHRDVKAANILLDEEFEAVVGDFG  179 (326)
T ss_dssp             HHHHHHHHHHHH--SSSSCEECCCCSGGGEEECTTCCEEECCCS
T ss_pred             HHHHHHHHHHHh--CCCCCeEeCCCchhhEEECCCCCEEeccCc
Confidence            222222332222  124589999999999999988888999975

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=98.31  E-value=2.5e-06  Score=72.51  Aligned_cols=78  Identities=23%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-++.+|.|..+.||++...++ .+++|.....  ....+..|+.+++.|..   -.+++++....  .+..+++||+
T Consensus        14 ~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~--~~~~~~v~e~   88 (279)
T 1qpc_A           14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQH---QRLVRLYAVVT--QEPIYIITEY   88 (279)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCC---TTBCCEEEEEC--SSSCEEEEEC
T ss_pred             hhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCC---cCcceEEEEEc--CCCcEEEEec
Confidence            344567888898899999987665 7889987642  34567789998888842   24556665543  3568999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|.++
T Consensus        89 ~~~~~L   94 (279)
T 1qpc_A           89 MENGSL   94 (279)
T ss_dssp             CTTCBH
T ss_pred             CCCCCH
Confidence            998743

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=98.31  E-value=3.3e-06  Score=74.06  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             ceeeeeeeCCccccceEEEEe------CCc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGT------DAG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~------~~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-.+.+|.|..+.||++..      ..+ .+++|+....    ....+..|+.++..|..+  -.+++++..... .+
T Consensus        46 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--p~iv~~~~~~~~-~~  122 (344)
T 1rjb_A           46 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSH--ENIVNLLGACTL-SG  122 (344)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCC--TTBCCEEEEECS-SS
T ss_pred             HceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCC--CCeeeEEEEEee-CC
Confidence            344467888888899999985      122 6889987632    245678899999998544  346667765543 56


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++||+++|.++
T Consensus       123 ~~~lv~e~~~~g~L  136 (344)
T 1rjb_A          123 PIYLIFEYCCYGDL  136 (344)
T ss_dssp             SCEEEEECCTTCBH
T ss_pred             ccEEEEecCCCCcH
Confidence            78999999998743

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=98.31  E-value=4.6e-06  Score=73.61  Aligned_cols=79  Identities=14%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ..-.+.+|.|..+.||++... .+ .|.+|+...      .....+..|..++..+..+  -.+++++..... .+..++
T Consensus        19 y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~h--p~iv~l~~~~~~-~~~~~l   95 (345)
T 1xjd_A           19 FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH--PFLTHMFCTFQT-KENLFF   95 (345)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTC--TTBCCEEEEEEC-SSEEEE
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCC--CCCCcEEEEEEe-CCEEEE
Confidence            344577888888999999874 33 788897653      1234456788888776444  245566655443 568899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|..+
T Consensus        96 v~E~~~gg~L  105 (345)
T 1xjd_A           96 VMEYLNGGDL  105 (345)
T ss_dssp             EEECCTTCBH
T ss_pred             EEeCCCCCcH
Confidence            9999998743

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=98.31  E-value=5.4e-06  Score=71.09  Aligned_cols=144  Identities=13%  Similarity=0.039  Sum_probs=87.4

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCCCc------chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSIGP------SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~~------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.++.|..+.||++.... + .+.+|+......      ..+..|...+..+..   -.+++++..... .+..|++|
T Consensus        35 i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~  110 (286)
T 3uqc_A           35 LLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDK---PGVARVLDVVHT-RAGGLVVA  110 (286)
T ss_dssp             EEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCC---CCcceeeEEEEE-CCcEEEEE
Confidence            35778888889999998753 3 788999875321      345667766655532   246667766544 57889999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      ||++|..+       .+.+.   . ..               .        . .+      .                ..
T Consensus       111 e~~~g~~L-------~~~l~---~-~~---------------~--------~-~~------~----------------~~  133 (286)
T 3uqc_A          111 EWIRGGSL-------QEVAD---T-SP---------------S--------P-VG------A----------------IR  133 (286)
T ss_dssp             ECCCEEEH-------HHHHT---T-CC---------------C--------H-HH------H----------------HH
T ss_pred             EecCCCCH-------HHHHh---c-CC---------------C--------h-HH------H----------------HH
Confidence            99998633       12221   0 00               0        0 00      0                01


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhh
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGM  235 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~  235 (299)
                      .+.+++..+..+..     ..++|+|++|+|||+++++...|.++. ..--.+..|+..
T Consensus       134 i~~ql~~aL~~lH~-----~givH~Dikp~NIll~~~g~~kl~~~~~~~~~~~~~Di~s  187 (286)
T 3uqc_A          134 AMQSLAAAADAAHR-----AGVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDDIRG  187 (286)
T ss_dssp             HHHHHHHHHHHHHH-----TTCCCCCCSGGGEEEETTSCEEECSCCCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----CCCccCCCCcccEEEcCCCCEEEEeccccCCCCchhHHHH
Confidence            11223333332322     479999999999999988866666653 334567778764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=98.30  E-value=2.6e-06  Score=73.26  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++... .+ .+.+|.....   .   ...+.+|+..+..+..   -.+++++..... .+..+++
T Consensus        14 ~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv   89 (294)
T 4eqm_A           14 KIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSH---QNIVSMIDVDEE-DDCYYLV   89 (294)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCB---TTBCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCC---CCCceEEEeeee-CCeEEEE
Confidence            34678888888999999854 33 7888976321   1   1345667776666642   245666665543 5678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+++|..+
T Consensus        90 ~e~~~g~~L   98 (294)
T 4eqm_A           90 MEYIEGPTL   98 (294)
T ss_dssp             EECCCSCBH
T ss_pred             EeCCCCCCH
Confidence            999999743

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.30  E-value=4.7e-06  Score=76.26  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=56.6

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ..-.+.+|.|..+.||+....+..+.+|+.... ....+..|+.+++.|..   -.+.+++.......+..+++||+++|
T Consensus       195 ~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~~~~~~~iv~e~~~~  271 (450)
T 1k9a_A          195 LKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRH---SNLVQLLGVIVEEKGGLYIVTEYMAK  271 (450)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCC---TTBCCEEEEEECTTSCEEEEEECCTT
T ss_pred             eEEEeeecCcCCeeEEEEEecCCeEEEEEeCCchHHHHHHHHHHHHHhccC---CCEEEEEEEEEcCCCceEEEEEecCC
Confidence            334577888988999999887668999988653 34567789998888742   24556665533213478999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      .++
T Consensus       272 g~L  274 (450)
T 1k9a_A          272 GSL  274 (450)
T ss_dssp             CBH
T ss_pred             CcH
Confidence            743

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=98.30  E-value=1.3e-06  Score=76.41  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCC
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      +.+|.|..+.||++... .+ .|.+|+...........|...++.+..+  -.+++++..... .+..+++||+++|..
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h--~niv~~~~~~~~-~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGH--PNIVKLHEVFHD-QLHTFLVMELLNGGE   92 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTC--TTBCCEEEEEEC-SSEEEEEECCCCSCB
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCC--CCeeEEEEEEEc-CCEEEEEEEccCCCc
Confidence            46888888999998874 23 7899988654445577899888888654  346666665443 567899999999863

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=98.30  E-value=2.9e-06  Score=75.54  Aligned_cols=77  Identities=17%  Similarity=0.146  Sum_probs=54.0

Q ss_pred             eeeeeCCccccceEEEEeC--------Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           26 KICPVGGGCINLASRYGTD--------AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--------~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      -.+.+|.|..+.||++...        .+ .+.+|+.....    ...+..|..+++.|..+  -.+++++..... .+.
T Consensus        85 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--pnIv~~~~~~~~-~~~  161 (370)
T 2psq_A           85 LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH--KNIINLLGACTQ-DGP  161 (370)
T ss_dssp             EEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCC--TTBCCEEEEECS-SSS
T ss_pred             eeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCC--CCEeeEEEEEcc-CCC
Confidence            3467899999999998741        12 58889876432    23467888888888544  246667765443 567


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++|||++|..+
T Consensus       162 ~~lv~e~~~~g~L  174 (370)
T 2psq_A          162 LYVIVEYASKGNL  174 (370)
T ss_dssp             CEEEEECCTTCBH
T ss_pred             EEEEEEcCCCCCH
Confidence            8999999999743

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=98.30  E-value=1.1e-05  Score=69.76  Aligned_cols=79  Identities=16%  Similarity=0.138  Sum_probs=54.5

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-c-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           23 HITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ...-.+.+|.|..+.||++.... + .+++|......   ...+..|+.+++.|. +  -.+++++..... .+..+++|
T Consensus        11 ~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~-h--p~iv~~~~~~~~-~~~~~lv~   86 (310)
T 3s95_A           11 DLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLE-H--PNVLKFIGVLYK-DKRLNFIT   86 (310)
T ss_dssp             GEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEEEE-TTEEEEEE
T ss_pred             HeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCC-C--cCcccEEEEEec-CCeeEEEE
Confidence            44456788999899999998743 3 78888765422   244667888777774 2  345666665443 56789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        87 e~~~~~~L   94 (310)
T 3s95_A           87 EYIKGGTL   94 (310)
T ss_dssp             ECCTTCBH
T ss_pred             EecCCCcH
Confidence            99998743

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=98.29  E-value=2.8e-06  Score=75.15  Aligned_cols=77  Identities=12%  Similarity=0.012  Sum_probs=53.4

Q ss_pred             eeeeeCCccccceEEEEeC----Cc-cEEEEecCC-------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           26 KICPVGGGCINLASRYGTD----AG-SFFVKTNRS-------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~-------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      -++.+|.|..+.||++...    .+ .+.+|+...       .....+..|..+++.+..+  -.+++++..... .+..
T Consensus        58 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~iv~~~~~~~~-~~~~  134 (355)
T 1vzo_A           58 LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQS--PFLVTLHYAFQT-ETKL  134 (355)
T ss_dssp             EEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTC--TTBCCEEEEEEE-TTEE
T ss_pred             EEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCC--CceeEEEEEEee-CceE
Confidence            3567888888999999862    33 788897653       1234466799999999754  235556554433 5678


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++|||++|..+
T Consensus       135 ~lv~e~~~~~~L  146 (355)
T 1vzo_A          135 HLILDYINGGEL  146 (355)
T ss_dssp             EEEECCCCSCBH
T ss_pred             EEEeecCCCCCH
Confidence            999999998643

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=98.28  E-value=6.3e-06  Score=70.59  Aligned_cols=79  Identities=11%  Similarity=0.030  Sum_probs=55.0

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC------------cchHHHHHHHHHHHHhcCCCCCccceeeccc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG------------PSMFEGEALGLGAMYETRTIRAPRPFKVGAL   88 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~------------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~   88 (299)
                      ...-.+.++.|..+.||++... ++ .+++|+.....            ...+..|..+++.+..+  -.+++++.....
T Consensus        18 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h--~~i~~~~~~~~~   95 (298)
T 1phk_A           18 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGH--PNIIQLKDTYET   95 (298)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTC--TTBCCEEEEEEC
T ss_pred             ccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCC--CCEeeeeeeecc
Confidence            4445677888888999999874 33 78999875321            13456788888888644  245666665443


Q ss_pred             CCCceEEEEecccCCC
Q 022304           89 PTGGSYIIMEFIEFGS  104 (299)
Q Consensus        89 ~~~~~~~v~e~l~G~~  104 (299)
                       .+..+++||+++|..
T Consensus        96 -~~~~~lv~e~~~~~~  110 (298)
T 1phk_A           96 -NTFFFLVFDLMKKGE  110 (298)
T ss_dssp             -SSEEEEEEECCTTCB
T ss_pred             -CCeEEEEEeccCCCc
Confidence             567899999999863

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=98.28  E-value=4.8e-06  Score=72.37  Aligned_cols=80  Identities=15%  Similarity=0.053  Sum_probs=55.4

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC--CCcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCce
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS--IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGS   93 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~--~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~   93 (299)
                      ...-++.++.|..+.||++... ++ .+++|+...  .....+..|...++.+..+  -.+++++......     .+..
T Consensus        25 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h--~~i~~~~~~~~~~~~~~~~~~~  102 (326)
T 2x7f_A           25 IFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHH--RNIATYYGAFIKKNPPGMDDQL  102 (326)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCS--TTBCCEEEEEEECC--CCCCEE
T ss_pred             cEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCC--CCeeeeeeEEeeccCccccceE
Confidence            3345678888888999999873 33 788998753  2345678899988888544  2455666543221     3578


Q ss_pred             EEEEecccCCC
Q 022304           94 YIIMEFIEFGS  104 (299)
Q Consensus        94 ~~v~e~l~G~~  104 (299)
                      +++||+++|..
T Consensus       103 ~lv~e~~~~~~  113 (326)
T 2x7f_A          103 WLVMEFCGAGS  113 (326)
T ss_dssp             EEEEECCTTEE
T ss_pred             EEEEEcCCCCc
Confidence            99999999863

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=98.28  E-value=4.1e-06  Score=79.83  Aligned_cols=136  Identities=16%  Similarity=0.136  Sum_probs=81.8

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      +..||.|..+.||++... .| .|.+|+-..      ........|...++.++...---+.+++..-.+ .+..|+|||
T Consensus       194 ~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~-~~~lylVmE  272 (689)
T 3v5w_A          194 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-PDKLSFILD  272 (689)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC-SSEEEEEEC
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE-CCEEEEEEe
Confidence            467899999999999864 34 788897542      122334566666666653211123444444333 578999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+.+       -..|.+   ...    |.                 .....+                        .
T Consensus       273 y~~GGdL-------~~~l~~---~~~----l~-----------------E~~a~~------------------------y  297 (689)
T 3v5w_A          273 LMNGGDL-------HYHLSQ---HGV----FS-----------------EADMRF------------------------Y  297 (689)
T ss_dssp             CCCSCBH-------HHHHHH---HCC----CC-----------------HHHHHH------------------------H
T ss_pred             cCCCCcH-------HHHHHh---cCC----CC-----------------HHHHHH------------------------H
Confidence            9999743       222222   111    10                 000111                        1


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.     ...+||+|++|+|||++.+|.+.|+||.
T Consensus       298 ~~qIl~aL~yLH-----~~gIiHRDLKPeNILld~~G~vKL~DFG  337 (689)
T 3v5w_A          298 AAEIILGLEHMH-----NRFVVYRDLKPANILLDEHGHVRISDLG  337 (689)
T ss_dssp             HHHHHHHHHHHH-----TTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             HHHHHHHHHHHH-----HCCccccCCchHHeEEeCCCCEEecccc
Confidence            123333333332     2579999999999999999888999985

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=98.27  E-value=2.4e-06  Score=72.64  Aligned_cols=135  Identities=17%  Similarity=0.111  Sum_probs=82.9

Q ss_pred             eeeeeeCCccccceEEEEeCCc--cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTDAG--SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-.+.+|.|..+.||++.....  .+++|+...      .....+..|..+++.+..   -.+++++..... .+..+++
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv   87 (279)
T 3fdn_A           12 EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH---PNILRLYGYFHD-ATRVYLI   87 (279)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCC---TTBCCEEEEEEC-SSEEEEE
T ss_pred             EEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCC---CCCcchhheEec-CCEEEEE
Confidence            3457788888899999987543  688897642      123446677777766642   345666665443 4678999


Q ss_pred             EecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHH
Q 022304           97 MEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIY  176 (299)
Q Consensus        97 ~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (299)
                      ||+++|..+       ...+.+.   ..    +                   ++.      .+                .
T Consensus        88 ~e~~~~~~l-------~~~l~~~---~~----~-------------------~~~------~~----------------~  112 (279)
T 3fdn_A           88 LEYAPLGTV-------YRELQKL---SK----F-------------------DEQ------RT----------------A  112 (279)
T ss_dssp             ECCCTTEEH-------HHHHHHH---SS----C-------------------CHH------HH----------------H
T ss_pred             EecCCCCcH-------HHHHHhc---CC----C-------------------CHH------HH----------------H
Confidence            999988633       2222221   10    0                   000      00                0


Q ss_pred             HHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          177 QRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       177 ~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..+.+++..+..+.     ...++|||++|+||+++.++.+.|+|+.
T Consensus       113 ~~~~qi~~~l~~LH-----~~~i~H~dlkp~Nili~~~~~~~l~Dfg  154 (279)
T 3fdn_A          113 TYITELANALSYCH-----SKRVIHRDIKPENLLLGSAGELKIADFG  154 (279)
T ss_dssp             HHHHHHHHHHHHHH-----TTTCEECCCCGGGEEECTTSCEEECSCC
T ss_pred             HHHHHHHHHHHHHH-----hCCEecccCChHhEEEcCCCCEEEEecc
Confidence            11222333333222     2479999999999999988888999975

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=98.27  E-value=5.4e-06  Score=72.00  Aligned_cols=78  Identities=12%  Similarity=0.011  Sum_probs=53.6

Q ss_pred             eeeeeeeCCccccceEEEEeC------Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           24 ITKICPVGGGCINLASRYGTD------AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      +.=++.+|.|....||+....      .+ .+.||.-...    ....+.+|+.++..|..   -.+-+++.+... .+.
T Consensus        28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~H---pNIV~l~g~~~~-~~~  103 (308)
T 4gt4_A           28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQH---PNVVCLLGVVTK-DQP  103 (308)
T ss_dssp             EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCC---TTBCCEEEEECS-SSS
T ss_pred             CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCC---CCCCCcceEEEE-CCE
Confidence            334578999999999997641      23 5778876532    23557889999988853   235556665543 567


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .++||||++|+++
T Consensus       104 ~~lV~Ey~~~G~L  116 (308)
T 4gt4_A          104 LSMIFSYCSHGDL  116 (308)
T ss_dssp             CEEEEECCSSCBH
T ss_pred             EEEEEEcCCCCcH
Confidence            8999999999743

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.27  E-value=3.6e-06  Score=70.91  Aligned_cols=78  Identities=19%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-++.++.|..+.||++...++ .+++|+....  ....+..|...++.|. +  -.+++++..... .+..+++||+
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~-h--~~i~~~~~~~~~-~~~~~lv~e~   84 (267)
T 3t9t_A            9 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLS-H--PKLVQLYGVCLE-QAPICLVTEF   84 (267)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCC-C--TTBCCEEEEECS-SSSCEEEECC
T ss_pred             heeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCC-C--CCEeeEEEEEcc-CCCeEEEEeC
Confidence            344567888888899999987555 7899988753  2355778888887774 2  245666655433 4678999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|..
T Consensus        85 ~~~~~   89 (267)
T 3t9t_A           85 MEHGC   89 (267)
T ss_dssp             CTTCB
T ss_pred             CCCCc
Confidence            99864

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=98.27  E-value=5.5e-06  Score=72.46  Aligned_cols=80  Identities=14%  Similarity=-0.005  Sum_probs=53.9

Q ss_pred             eeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCC---CceEEEEeccc
Q 022304           25 TKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPT---GGSYIIMEFIE  101 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~---~~~~~v~e~l~  101 (299)
                      .-.+.++.|..+.||+....+..+++|+........+..|.+++..+.-. .-.+.+++.......   ...+++||+++
T Consensus        45 ~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~-h~ni~~~~~~~~~~~~~~~~~~lv~e~~~  123 (342)
T 1b6c_B           45 VLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLR-HENILGFIAADNKDNGTWTQLWLVSDYHE  123 (342)
T ss_dssp             EEEEEEEEETTEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHSCCC-CTTBCCEEEEEECCCSSCCCEEEEECCCT
T ss_pred             EEEeeecCCCCcEEEEEEEcCccEEEEEeCchhHHHHHHHHHHHHHhhcC-CCcEEEEEeeecccCCccceeEEEEeecC
Confidence            34577888888999999887668999998654444566788777664211 123555665543311   26899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |..+
T Consensus       124 ~g~L  127 (342)
T 1b6c_B          124 HGSL  127 (342)
T ss_dssp             TCBH
T ss_pred             CCcH
Confidence            8643

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=98.26  E-value=4.2e-06  Score=71.85  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             eeeeeeeCCccccceEEEEe-----CCc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCc
Q 022304           24 ITKICPVGGGCINLASRYGT-----DAG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGG   92 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~-----~~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~   92 (299)
                      ..-++.+|.|..+.||++..     ..+ .+++|+....    ....+..|+.+++.|..   -.+++++...... ...
T Consensus        23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~~~~~~   99 (302)
T 4e5w_A           23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYH---ENIVKYKGICTEDGGNG   99 (302)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCC---TTBCCEEEEEEC---CC
T ss_pred             hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCC---CCeeeeeeEEecCCCce
Confidence            34467889898899999972     233 7899987642    22456788888877752   3455566544331 245


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+++|..+
T Consensus       100 ~~lv~e~~~~~~L  112 (302)
T 4e5w_A          100 IKLIMEFLPSGSL  112 (302)
T ss_dssp             EEEEEECCTTCBH
T ss_pred             EEEEEEeCCCCcH
Confidence            7899999998643

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.26  E-value=7.7e-06  Score=69.94  Aligned_cols=77  Identities=16%  Similarity=0.034  Sum_probs=54.5

Q ss_pred             ceeeeeeeCCccccceEEEEe-CCc-cEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGT-DAG-SFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-.+.++.|..+.||++.. .++ .+++|+... .....+..|..+++.+...  ..+|.+...... .+..+++||+
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~--~~i~~~~~~~~~-~~~~~lv~e~   86 (296)
T 3uzp_A           10 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGG--VGIPTIRWCGAE-GDYNVMVMEL   86 (296)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTS--TTCCCEEEEEEE-TTEEEEEEEC
T ss_pred             EEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcC--CCCCccccccCC-CCceEEEEEe
Confidence            444567788888899999985 333 889998653 3345688999999999764  345555544332 4678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      + |.
T Consensus        87 ~-~~   89 (296)
T 3uzp_A           87 L-GP   89 (296)
T ss_dssp             C-CC
T ss_pred             c-CC
Confidence            9 54

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=98.26  E-value=3.5e-06  Score=74.31  Aligned_cols=79  Identities=8%  Similarity=0.018  Sum_probs=53.5

Q ss_pred             eeeeeeeCCccccceEEEEeCC-c-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ..-++.+|.|..+.||++.... + .|.+|+....   .   ...+..|..++..+..+  -.+++++..... .+..++
T Consensus        11 y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~h--p~iv~l~~~~~~-~~~~~l   87 (345)
T 3a8x_A           11 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNH--PFLVGLHSCFQT-ESRLFF   87 (345)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTC--TTBCCEEEEEEC-SSEEEE
T ss_pred             eEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCC--CccCeEEEEEEe-CCEEEE
Confidence            3445778888889999998743 3 7888987531   1   13356788877776444  235566655433 568899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +||+++|..+
T Consensus        88 v~e~~~gg~L   97 (345)
T 3a8x_A           88 VIEYVNGGDL   97 (345)
T ss_dssp             EECCCCSCBH
T ss_pred             EEeCCCCCcH
Confidence            9999998743

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=98.24  E-value=2.8e-06  Score=75.25  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=51.7

Q ss_pred             eeeeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ..-+..+|.|..+.||++.... + .|.+|+...      .....+..|..++..+..+  --+++++..... .+..|+
T Consensus        22 y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~h--p~iv~l~~~~~~-~~~~~l   98 (353)
T 2i0e_A           22 FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKP--PFLTQLHSCFQT-MDRLYF   98 (353)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCC--TTBCCEEEEEEC-SSEEEE
T ss_pred             cEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCC--CEEeeEEEEEEc-CCEEEE
Confidence            3445778888889999998754 3 688898653      1223355677666555332  235555554433 568899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|..+
T Consensus        99 v~E~~~gg~L  108 (353)
T 2i0e_A           99 VMEYVNGGDL  108 (353)
T ss_dssp             EEECCCSCBH
T ss_pred             EEeCCCCCcH
Confidence            9999999743

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=98.24  E-value=4.3e-06  Score=71.72  Aligned_cols=82  Identities=17%  Similarity=0.050  Sum_probs=53.4

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~v~e~   99 (299)
                      ...-.+.+|.|..+.||+....+..+++|+...........|.+++..+.-. .-.+.+++......   ....+++||+
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~-h~niv~~~~~~~~~~~~~~~~~lv~e~   87 (301)
T 3q4u_A            9 DITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLR-HENILGFIASDMTSRHSSTQLWLITHY   87 (301)
T ss_dssp             GCEEEEEEEECSSEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHTCCC-CTTBCCEEEEEEEEETTEEEEEEEECC
T ss_pred             cEEEEEeeccCCCcEEEEEEECCEEEEEEEeccccchhhHHHHHHHHHhhcc-CcCeeeEEEeeccccCCCceeEEehhh
Confidence            4455678898988999999887668999998654344455677766654211 12344555432211   2457899999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        88 ~~~g~L   93 (301)
T 3q4u_A           88 HEMGSL   93 (301)
T ss_dssp             CTTCBH
T ss_pred             ccCCCH
Confidence            998643

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=98.24  E-value=2.4e-06  Score=73.88  Aligned_cols=138  Identities=14%  Similarity=0.044  Sum_probs=79.5

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCC-C---CcchHHHHHHHHHHHHhcCCCCCccceeecccC----------
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRS-I---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP----------   89 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~-~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----------   89 (299)
                      -++.+|.|..+.||++... +| .|.+|.-.. .   ....+.+|+.+++.|. |  -.+.+++......          
T Consensus         9 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~-H--pnIV~~~~~~~~~~~~~~~~~~~   85 (299)
T 4g31_A            9 PIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE-H--PGIVRYFNAWLEKNTTEKLQPSS   85 (299)
T ss_dssp             EEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEEEEEC---------
T ss_pred             EeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCC-C--CCCCeEEEEEEecCccccccccC
Confidence            3567899989999999863 34 788886542 1   1244678888887774 2  2344555432110          


Q ss_pred             -CCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHh
Q 022304           90 -TGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALD  168 (299)
Q Consensus        90 -~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (299)
                       ....|++||+++|+.+       ...+   +....    +.           .     ..+..      +         
T Consensus        86 ~~~~l~ivmE~~~gg~L-------~~~l---~~~~~----~~-----------~-----~~~~~------~---------  120 (299)
T 4g31_A           86 PKVYLYIQMQLCRKENL-------KDWM---NGRCT----IE-----------E-----RERSV------C---------  120 (299)
T ss_dssp             -CEEEEEEEECCCSCCH-------HHHH---HTCCS----GG-----------G-----SCHHH------H---------
T ss_pred             CCcEEEEEEecCCCCcH-------HHHH---HhcCC----CC-----------h-----hHHHH------H---------
Confidence             1235899999999744       2222   11111    00           0     01100      0         


Q ss_pred             hcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          169 QYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                             ...+.++++.+..+..     ..+||+|++|+|||++.++.+.|.||.
T Consensus       121 -------~~i~~qi~~al~ylH~-----~~IiHRDlKp~NILl~~~~~vKl~DFG  163 (299)
T 4g31_A          121 -------LHIFLQIAEAVEFLHS-----KGLMHRDLKPSNIFFTMDDVVKVGDFG  163 (299)
T ss_dssp             -------HHHHHHHHHHHHHHHH-----TTCCCCCCCGGGEEECTTCCEEECCCC
T ss_pred             -------HHHHHHHHHHHHHHHH-----CcCccccCcHHHeEECCCCcEEEccCc
Confidence                   1122233444443332     479999999999999988888999985

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=98.24  E-value=3.2e-06  Score=74.81  Aligned_cols=77  Identities=16%  Similarity=0.074  Sum_probs=50.9

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ..-++.+|.|..+.||++... .| .|.+|+...      .....+..|..+++.+. +  -.+++++..... .+..++
T Consensus        43 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--p~iv~~~~~~~~-~~~~~l  118 (350)
T 1rdq_E           43 FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN-F--PFLVKLEFSFKD-NSNLYM  118 (350)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCC-C--TTBCCEEEEEEC-SSEEEE
T ss_pred             CEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCC-C--CCCCeEEEEEEc-CCEEEE
Confidence            344678898988999999874 33 789998642      12234556777666552 1  234555554333 467899


Q ss_pred             EEecccCCC
Q 022304           96 IMEFIEFGS  104 (299)
Q Consensus        96 v~e~l~G~~  104 (299)
                      +||+++|..
T Consensus       119 v~e~~~gg~  127 (350)
T 1rdq_E          119 VMEYVAGGE  127 (350)
T ss_dssp             EEECCTTCB
T ss_pred             EEcCCCCCc
Confidence            999999863

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=98.24  E-value=5.8e-06  Score=71.30  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             ceeeeeeeCCccccceEEEEe------CCc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGT------DAG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~------~~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-.+.+|.|..+.||+++.      ..+ .+++|+.....    ...+..|+.+++.|..+  -.+++++..... .+
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~i~~~~~~~~~-~~  100 (313)
T 1t46_A           24 RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNH--MNIVNLLGACTI-GG  100 (313)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECS-SS
T ss_pred             hhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccC--CCeeeEEEEEec-CC
Confidence            444567888888899999974      223 78899886432    24567899999888544  346667765443 56


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++||+++|.++
T Consensus       101 ~~~lv~e~~~~~~L  114 (313)
T 1t46_A          101 PTLVITEYCCYGDL  114 (313)
T ss_dssp             SCEEEEECCTTEEH
T ss_pred             CcEEEEecCCCCCH
Confidence            78999999998643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=98.24  E-value=2.6e-06  Score=72.90  Aligned_cols=73  Identities=16%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             eeeeeCCccccceEEEEeCCc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTDAG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.+|.|..+.||++....+ .+++|.....     ....+.+|+.+++.|..   -.+++++..... .+..+++||+
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~   81 (288)
T 1ob3_A            6 GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKH---SNIVKLYDVIHT-KKRLVLVFEH   81 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCC---TTBCCEEEEEEC-SSCEEEEEEC
T ss_pred             hhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCC---CCEeeeeeEEcc-CCeEEEEEEe
Confidence            356788888899999987645 7888876532     12446678887777642   245666655443 5688999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        82 ~~~   84 (288)
T 1ob3_A           82 LDQ   84 (288)
T ss_dssp             CSE
T ss_pred             cCC
Confidence            986

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=98.23  E-value=4.7e-06  Score=73.01  Aligned_cols=76  Identities=16%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             eeeeeeCCccccceEEEEe-CCc-cEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGT-DAG-SFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.+|.|..+.||++.. ..| .+++|+....  .   ...+.+|+.+++.+..   -.+++++..... .+..+++|
T Consensus        18 ~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~l~~~~~~-~~~~~lv~   93 (328)
T 3fe3_A           18 RLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNH---PNIVKLFEVIET-EKTLYLIM   93 (328)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEEE-CCEEEEEE
Confidence            3457788888899999986 333 7889986431  1   2345678888888752   346667765543 56889999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      |+++|..
T Consensus        94 e~~~~~~  100 (328)
T 3fe3_A           94 EYASGGE  100 (328)
T ss_dssp             CCCTTCB
T ss_pred             ECCCCCc
Confidence            9999863

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=98.23  E-value=4.5e-06  Score=76.09  Aligned_cols=78  Identities=13%  Similarity=0.061  Sum_probs=54.2

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           23 HITKICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ...-++.+|.|..+.||++...+ + .|.+|+...      .....+..|..++..+..   -.+.+++..... .+..+
T Consensus        75 ~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~h---p~Iv~l~~~~~~-~~~~~  150 (437)
T 4aw2_A           75 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDS---KWITTLHYAFQD-DNNLY  150 (437)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCT---TTBCCEEEEEEC-SSEEE
T ss_pred             heEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCC---CCEEEEEEEEee-CCEEE
Confidence            34456788999999999998754 3 688887642      223447788888877632   235556654433 56789


Q ss_pred             EEEecccCCC
Q 022304           95 IIMEFIEFGS  104 (299)
Q Consensus        95 ~v~e~l~G~~  104 (299)
                      ++|||++|..
T Consensus       151 lV~Ey~~gg~  160 (437)
T 4aw2_A          151 LVMDYYVGGD  160 (437)
T ss_dssp             EEECCCTTCB
T ss_pred             EEEecCCCCc
Confidence            9999999974

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=98.23  E-value=4.5e-06  Score=72.83  Aligned_cols=78  Identities=12%  Similarity=0.035  Sum_probs=54.1

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ..-++.+|.|..+.||++... .+ .+.+|+....    ....+..|..+++.|..   -.+++++..... .+..+++|
T Consensus         9 y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~~~~~~~~-~~~~~lv~   84 (323)
T 3tki_A            9 WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNH---ENVVKFYGHRRE-GNIQYLFL   84 (323)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             ceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCC---CCCCeEEEEEec-CCeEEEEE
Confidence            334577888888999999764 33 7888986431    23557889988888753   345666665543 56789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        85 e~~~~~~L   92 (323)
T 3tki_A           85 EYCSGGEL   92 (323)
T ss_dssp             ECCTTEEG
T ss_pred             EcCCCCcH
Confidence            99998654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=98.22  E-value=4.3e-06  Score=71.61  Aligned_cols=74  Identities=18%  Similarity=0.081  Sum_probs=49.8

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.+|.|..+.||++.... + .+++|+.....     ...+.+|+.+++.+..   -.+.+++..... .+..+++||
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e   81 (292)
T 3o0g_A            6 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH---KNIVRLHDVLHS-DKKLTLVFE   81 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCC---TTBCCEEEEEEE-TTEEEEEEE
T ss_pred             eeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCC---CCEeeEEeEEEe-CCEEEEEEe
Confidence            45678889889999998743 3 68889775321     1345567777766642   235556655433 568899999


Q ss_pred             cccCC
Q 022304           99 FIEFG  103 (299)
Q Consensus        99 ~l~G~  103 (299)
                      +++|.
T Consensus        82 ~~~~~   86 (292)
T 3o0g_A           82 FCDQD   86 (292)
T ss_dssp             CCSEE
T ss_pred             cCCCC
Confidence            99873

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=98.22  E-value=6.7e-06  Score=71.90  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=54.9

Q ss_pred             eeeeeeeCCccccceEEEEeC--------Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCC
Q 022304           24 ITKICPVGGGCINLASRYGTD--------AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT   90 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~--------~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~   90 (299)
                      ..-.+.+|.|..+.||++...        ++ .+++|+.....    ...+..|..+++.|..+  -.+++++..... .
T Consensus        37 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--p~iv~~~~~~~~-~  113 (334)
T 2pvf_A           37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH--KNIINLLGACTQ-D  113 (334)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECS-S
T ss_pred             eEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcC--CCEeeEEEEEcc-C
Confidence            344578898988999999752        22 68899886432    23467888888888544  245667765443 5


Q ss_pred             CceEEEEecccCCCC
Q 022304           91 GGSYIIMEFIEFGSS  105 (299)
Q Consensus        91 ~~~~~v~e~l~G~~~  105 (299)
                      +..+++||+++|.++
T Consensus       114 ~~~~lv~e~~~~~~L  128 (334)
T 2pvf_A          114 GPLYVIVEYASKGNL  128 (334)
T ss_dssp             SCCEEEEECCTTCBH
T ss_pred             CceEEEEECCCCCcH
Confidence            678999999998743

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.22  E-value=2.1e-05  Score=68.41  Aligned_cols=97  Identities=11%  Similarity=0.172  Sum_probs=63.3

Q ss_pred             cCCcchHHHHHHhc-CCC---cceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---CcchHHHHHHHHHHHHhcC
Q 022304            5 ALSDDPIREWILSE-GKA---THITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---GPSMFEGEALGLGAMYETR   75 (299)
Q Consensus         5 ~~~~~~i~~~l~~~-~~~---~~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~   75 (299)
                      ..+.+++.+.+... +.+   ......+++|.|..+.||++... +| .+++|+....   ....+..|+..++.+..  
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--  101 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH--  101 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCC--
T ss_pred             cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCC--
Confidence            35667777777654 211   12345678999989999999874 34 7889987532   23446678877766642  


Q ss_pred             CCCCccceeecccCCCceEEEEecccCCCC
Q 022304           76 TIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        76 ~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                       -.+.+++..... .+..+++|||++|..+
T Consensus       102 -~niv~~~~~~~~-~~~~~lv~e~~~~~~L  129 (321)
T 2c30_A          102 -FNVVEMYKSYLV-GEELWVLMEFLQGGAL  129 (321)
T ss_dssp             -TTBCCEEEEEEE-TTEEEEEECCCCSCBH
T ss_pred             -CCcceEEEEEEE-CCEEEEEEecCCCCCH
Confidence             235555554433 4678999999999743

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=98.22  E-value=6.5e-06  Score=71.74  Aligned_cols=80  Identities=21%  Similarity=0.200  Sum_probs=53.8

Q ss_pred             ceeeeeeeCCccccceEEEEe-----CCc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCc
Q 022304           23 HITKICPVGGGCINLASRYGT-----DAG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-----~~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~   92 (299)
                      ...-++.++.|..+.||++..     ..+ .+++|+.....   ...+.+|+.+++.|..   -.+++++...... ...
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~~~~~~  100 (327)
T 3lxl_A           24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHS---DFIVKYRGVSYGPGRQS  100 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEEECSSSCE
T ss_pred             hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCC---CceeEEEEEEecCCCce
Confidence            344567889998999999972     233 78899876532   2346788888887732   3455565443221 456


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+++|..+
T Consensus       101 ~~lv~e~~~~~~L  113 (327)
T 3lxl_A          101 LRLVMEYLPSGCL  113 (327)
T ss_dssp             EEEEEECCTTCBH
T ss_pred             EEEEEeecCCCCH
Confidence            8899999988743

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=98.22  E-value=5.2e-06  Score=73.02  Aligned_cols=77  Identities=13%  Similarity=-0.018  Sum_probs=51.3

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++... .| .|.+|+...      .....+..|..+++.+. +  -.+++++..... .+..+++
T Consensus         8 ~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--p~iv~l~~~~~~-~~~~~lv   83 (337)
T 1o6l_A            8 DYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR-H--PFLTALKYAFQT-HDRLCFV   83 (337)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCC-C--TTBCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCC-C--CcCcceEEEEEe-CCEEEEE
Confidence            34577888888999999864 23 788898743      12334567777776553 2  234555554433 5688999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus        84 ~E~~~gg~L   92 (337)
T 1o6l_A           84 MEYANGGEL   92 (337)
T ss_dssp             EECCTTCBH
T ss_pred             EeCCCCCcH
Confidence            999999743

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=98.22  E-value=4.9e-06  Score=70.92  Aligned_cols=78  Identities=23%  Similarity=0.182  Sum_probs=55.7

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-c-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           23 HITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ...-.+.++.|..+.||++...+ + .+++|......  ...+..|..+++.|..   -.+++++..... .+..+++||
T Consensus        14 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v~e   89 (288)
T 3kfa_A           14 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH---PNLVQLLGVCTR-EPPFYIITE   89 (288)
T ss_dssp             GEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCC---TTBCCEEEEECS-SSSEEEEEE
T ss_pred             ceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEcc-CCCEEEEEE
Confidence            34446788999999999998753 3 78889876432  3456788988888853   345666665443 567899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      +++|.+
T Consensus        90 ~~~~~~   95 (288)
T 3kfa_A           90 FMTYGN   95 (288)
T ss_dssp             CCTTEE
T ss_pred             cCCCCc
Confidence            999863

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=98.22  E-value=9.6e-06  Score=71.93  Aligned_cols=77  Identities=17%  Similarity=0.048  Sum_probs=54.9

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -.-++.+|.|..+.||++... .+ .+++|+....  ....+.+|+..++.|..   -.+++++..... .+..+++|||
T Consensus        22 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~-~~~~~lv~e~   97 (361)
T 3uc3_A           22 YDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRH---PNIVRFKEVILT-PTHLAIIMEY   97 (361)
T ss_dssp             EEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEEEEEC
T ss_pred             EEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCC---CCCCcEEEEEee-CCEEEEEEEe
Confidence            344678999999999999874 33 7888977542  24557789988888753   245566655443 5678999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|..
T Consensus        98 ~~~~~  102 (361)
T 3uc3_A           98 ASGGE  102 (361)
T ss_dssp             CCSCB
T ss_pred             CCCCC
Confidence            99864

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=98.21  E-value=6.8e-06  Score=70.58  Aligned_cols=77  Identities=13%  Similarity=0.093  Sum_probs=50.6

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----------------------------cchHHHHHHHHHHHHhc
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----------------------------PSMFEGEALGLGAMYET   74 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----------------------------~~~~~~E~~~l~~L~~~   74 (299)
                      -.+.+|.|..+.||++... ++ .+.+|+.....                             ...+..|+.+++.|.. 
T Consensus        17 ~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-   95 (298)
T 2zv2_A           17 LKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDH-   95 (298)
T ss_dssp             EEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCC-
T ss_pred             EEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCC-
Confidence            3577898988999999763 33 78889764311                             1346788888887742 


Q ss_pred             CCCCCccceeecccC-CCceEEEEecccCCCC
Q 022304           75 RTIRAPRPFKVGALP-TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        75 ~~~~vP~~~~~~~~~-~~~~~~v~e~l~G~~~  105 (299)
                        -.+++++...... .+..+++||+++|..+
T Consensus        96 --~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l  125 (298)
T 2zv2_A           96 --PNVVKLVEVLDDPNEDHLYMVFELVNQGPV  125 (298)
T ss_dssp             --TTBCCEEEEEECSSSSEEEEEEECCTTCBS
T ss_pred             --CCCCeEEEEEEcCCCCEEEEEEecCCCCcH
Confidence              2455666553321 4578999999998765

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.21  E-value=9.2e-06  Score=70.07  Aligned_cols=78  Identities=14%  Similarity=0.058  Sum_probs=51.6

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCC--------CcchHHHHHHHHHHHHhcCCCCCccceeecccCC----
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSI--------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPT----   90 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~--------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~----   90 (299)
                      .-++.+|.|..+.||++...  +..+++|+....        ......+|...++.|.....-.+++++.......    
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~   91 (308)
T 3g33_A           12 EPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDRE   91 (308)
T ss_dssp             EEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCc
Confidence            34578899999999999852  337888976421        1235678999998887521234566665443211    


Q ss_pred             CceEEEEecccC
Q 022304           91 GGSYIIMEFIEF  102 (299)
Q Consensus        91 ~~~~~v~e~l~G  102 (299)
                      ...+++|++++|
T Consensus        92 ~~~~lv~e~~~~  103 (308)
T 3g33_A           92 IKVTLVFEHVDQ  103 (308)
T ss_dssp             EEEEEEEECCCC
T ss_pred             eeEEEEehhhhc
Confidence            146899999986

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.21  E-value=8.4e-06  Score=69.63  Aligned_cols=77  Identities=16%  Similarity=0.034  Sum_probs=52.2

Q ss_pred             ceeeeeeeCCccccceEEEEe-CCc-cEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGT-DAG-SFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-.+.++.|..+.||++.. ..+ .+++|+... .....+..|..+++.+...  -.++.+...... ....+++||+
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~--~~i~~~~~~~~~-~~~~~lv~e~   86 (296)
T 4hgt_A           10 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGG--VGIPTIRWCGAE-GDYNVMVMEL   86 (296)
T ss_dssp             -CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTS--TTCCCEEEEEEE-TTEEEEEEEC
T ss_pred             ceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCC--CCCCeeeeecCC-CCceEEEEEc
Confidence            334457788888899999985 333 789997543 2345578899999998754  334545444332 4678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      + |.
T Consensus        87 ~-~~   89 (296)
T 4hgt_A           87 L-GP   89 (296)
T ss_dssp             C-CC
T ss_pred             c-CC
Confidence            9 54

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=98.21  E-value=9.3e-06  Score=70.14  Aligned_cols=79  Identities=13%  Similarity=0.037  Sum_probs=51.4

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-c-cEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-++.++.|..+.||++.... | .+++|..... ....+..|+.++..+..   -.+++++..... .+..+++||+
T Consensus        30 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~  105 (314)
T 3com_A           30 VFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDS---PHVVKYYGSYFK-NTDLWIVMEY  105 (314)
T ss_dssp             CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCC---TTBCCEEEEEEE-TTEEEEEEEC
T ss_pred             hhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCC---CCCccEEEEEEe-CCEEEEEeec
Confidence            34446788888889999998753 4 7889987642 34557788888877742   345666655433 5678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus       106 ~~~~~L  111 (314)
T 3com_A          106 CGAGSV  111 (314)
T ss_dssp             CTTEEH
T ss_pred             CCCCCH
Confidence            998633

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=98.20  E-value=6.3e-06  Score=73.52  Aligned_cols=76  Identities=14%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..+.+|.|..+.||++... +| .+++|+.....   ...+.+|+.+++.|..   -.+++++..... .+..+++|||+
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~~~~~~~~-~~~~~lv~E~~  168 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDH---ANLIQLYDAFES-KNDIVLVMEYV  168 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCC---TTBCCEEEEEEC-SSEEEEEEECC
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCC---CCCCeEEEEEEE-CCEEEEEEeCC
Confidence            3466899988999998763 34 78889876432   3456788887777742   346666665443 56789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       169 ~~~~L  173 (373)
T 2x4f_A          169 DGGEL  173 (373)
T ss_dssp             TTCEE
T ss_pred             CCCcH
Confidence            98744

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=98.20  E-value=1.2e-05  Score=71.83  Aligned_cols=77  Identities=17%  Similarity=0.081  Sum_probs=54.2

Q ss_pred             eeeeeCCccccceEEEEeC--------C-ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           26 KICPVGGGCINLASRYGTD--------A-GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--------~-g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      -.+.+|.|..+.||++...        . ..+.+|+.....    ...+..|.++++.+..+  -.+++++..... .+.
T Consensus        73 i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--pnIv~~~~~~~~-~~~  149 (382)
T 3tt0_A           73 LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH--KNIINLLGACTQ-DGP  149 (382)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECS-SSS
T ss_pred             eeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCC--chhhhheeeecc-CCc
Confidence            3467888988999998742        1 158889876532    14467899999888544  346667765543 567


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+++|..+
T Consensus       150 ~~lv~e~~~~g~L  162 (382)
T 3tt0_A          150 LYVIVEYASKGNL  162 (382)
T ss_dssp             CEEEEECCTTCBH
T ss_pred             eEEEEEecCCCcH
Confidence            8999999998743

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=98.19  E-value=9.9e-06  Score=72.23  Aligned_cols=75  Identities=21%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -.+.+|.|..+.||+.... ++ .+.+|......    ...+..|+.+++.|..   -.+++++..... .+..+++||+
T Consensus       118 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~-~~~~~lv~e~  193 (377)
T 3cbl_A          118 LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSH---PNIVRLIGVCTQ-KQPIYIVMEL  193 (377)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCC---TTBCCEEEEECS-SSSCEEEEEC
T ss_pred             EeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCC---CCEEEEEEEEec-CCCcEEEEEc
Confidence            3577888988999999874 33 78899876431    2346678888877742   245666665443 4678999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|..
T Consensus       194 ~~~g~  198 (377)
T 3cbl_A          194 VQGGD  198 (377)
T ss_dssp             CTTCB
T ss_pred             CCCCC
Confidence            99863

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=98.19  E-value=1e-05  Score=69.33  Aligned_cols=101  Identities=14%  Similarity=0.150  Sum_probs=57.9

Q ss_pred             ccccCCcchHHHHHHhc-CCCc-ceeeeeeeCCccccceEEEEeCC--c---cEEEEecCCCC----cchHHHHHHHHHH
Q 022304            2 TVAALSDDPIREWILSE-GKAT-HITKICPVGGGCINLASRYGTDA--G---SFFVKTNRSIG----PSMFEGEALGLGA   70 (299)
Q Consensus         2 ~~~~~~~~~i~~~l~~~-~~~~-~~~~~~~~~~G~~n~~y~v~~~~--g---~~vlK~~~~~~----~~~~~~E~~~l~~   70 (299)
                      .+.+++.+.....-... +... ...-.+.+|.|..+.||+....+  +   .+.+|......    ...+..|..+++.
T Consensus         3 d~~~~~~~~~~~~~~~~i~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~   82 (298)
T 3f66_A            3 DLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD   82 (298)
T ss_dssp             CGGGSCHHHHHHHGGGBCCGGGEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHT
T ss_pred             cccccChhHhhhhhheecCccceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHh
Confidence            34555555444433222 2221 22234778989899999987532  2   36777765421    2345678877776


Q ss_pred             HHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           71 MYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        71 L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +..   -.+.+++.......+..+++||+++|..+
T Consensus        83 l~h---~~iv~~~~~~~~~~~~~~~v~e~~~~~~L  114 (298)
T 3f66_A           83 FSH---PNVLSLLGICLRSEGSPLVVLPYMKHGDL  114 (298)
T ss_dssp             CCC---TTBCCCCEEECCSSSCCEEEEECCTTCBH
T ss_pred             CCC---CCEeeeeeEEEcCCCceEEEEeCCCCCCH
Confidence            642   23455555422224678999999999643

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=98.19  E-value=6.6e-06  Score=71.75  Aligned_cols=81  Identities=14%  Similarity=-0.016  Sum_probs=50.4

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEEEEecc
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYIIMEFI  100 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~v~e~l  100 (299)
                      ..-++.+|.|..+.||+....+..+++|+...........|.+++..+.-. .-.+.+++......   ....+++|||+
T Consensus        39 y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~-h~~i~~~~~~~~~~~~~~~~~~lv~e~~  117 (337)
T 3mdy_A           39 IQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMR-HENILGFIAADIKGTGSWTQLYLITDYH  117 (337)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCC-CTTBCCEEEEEEESCGGGCEEEEEECCC
T ss_pred             eEEEeEeecCCCeEEEEEEECCceEEEEEEeccccchhhhHHHHHHHHhhc-CCCeeeEEEEEccCCCCCCceEEEEecc
Confidence            334677888888999999887668999987543333344555544333211 12344555443321   15679999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|.++
T Consensus       118 ~~g~L  122 (337)
T 3mdy_A          118 ENGSL  122 (337)
T ss_dssp             TTCBH
T ss_pred             CCCcH
Confidence            98643

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=98.19  E-value=7e-06  Score=74.28  Aligned_cols=79  Identities=15%  Similarity=0.051  Sum_probs=54.1

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ...-++.+|.|..+.||++... .| .|.+|+...      .....+..|..++..+..   -.+++++..... .+..|
T Consensus        62 ~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~h---p~Iv~l~~~~~~-~~~~~  137 (412)
T 2vd5_A           62 DFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDR---RWITQLHFAFQD-ENYLY  137 (412)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCT---TTBCCEEEEEEC-SSEEE
T ss_pred             hEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCC---CCeeeEEEEEee-CCEEE
Confidence            3445677898988999999874 33 788898642      123446788888876632   235556654433 56789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|..+
T Consensus       138 lVmE~~~gg~L  148 (412)
T 2vd5_A          138 LVMEYYVGGDL  148 (412)
T ss_dssp             EEECCCCSCBH
T ss_pred             EEEcCCCCCcH
Confidence            99999998743

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=98.19  E-value=5.4e-06  Score=72.26  Aligned_cols=77  Identities=17%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++... +| .|.+|+...      .....+..|..+++.+..   -.+.+++..... ....+++
T Consensus         9 ~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~Iv~~~~~~~~-~~~~~lv   84 (318)
T 1fot_A            9 QILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH---PFIIRMWGTFQD-AQQIFMI   84 (318)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCB---TTBCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCC---CCCceEeEEEEe-CCEEEEE
Confidence            34567888888999999874 34 788898643      122445667777766532   235556654433 5688999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+++|..+
T Consensus        85 ~e~~~gg~L   93 (318)
T 1fot_A           85 MDYIEGGEL   93 (318)
T ss_dssp             ECCCCSCBH
T ss_pred             EeCCCCCCH
Confidence            999998643

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=98.19  E-value=4.1e-06  Score=73.33  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=55.3

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-------ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTDA-------GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-++.+|.|..+.||++...+       ..+++|+.....    ...+.+|+.+++.|. +  -.+++++..... .+
T Consensus        48 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h--p~iv~~~~~~~~-~~  123 (343)
T 1luf_A           48 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD-N--PNIVKLLGVCAV-GK  123 (343)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC-C--TTBCCEEEEECS-SS
T ss_pred             HCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCC-C--CCEEEEEEEEcc-CC
Confidence            34456788989889999998642       368899886532    234677888887774 2  345666665433 56


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++|||++|.++
T Consensus       124 ~~~lv~e~~~~~~L  137 (343)
T 1luf_A          124 PMCLLFEYMAYGDL  137 (343)
T ss_dssp             SCEEEEECCTTCBH
T ss_pred             ceEEEEecCCCCcH
Confidence            78999999999744

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=98.18  E-value=1.9e-05  Score=67.75  Aligned_cols=77  Identities=14%  Similarity=0.068  Sum_probs=52.0

Q ss_pred             eeeeeeeCCccccceEEEEeCC-c-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           24 ITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ..-++.+|.|..+.||++.... + .+++|+....   ....+..|...+..+..   -.+++++..... .+..+++||
T Consensus        21 y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e   96 (302)
T 2j7t_A           21 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDH---PYIVKLLGAYYH-DGKLWIMIE   96 (302)
T ss_dssp             EEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-C-CEEEEEE
T ss_pred             eeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCC---CCEeeeeeeeee-CCeEEEEEE
Confidence            3345778889889999998753 3 7888887542   23446678888777742   245566655433 568899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      +++|..
T Consensus        97 ~~~~~~  102 (302)
T 2j7t_A           97 FCPGGA  102 (302)
T ss_dssp             CCTTEE
T ss_pred             eCCCCc
Confidence            999863

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=98.18  E-value=5.5e-06  Score=73.32  Aligned_cols=78  Identities=18%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             eeeeeCCccccceEEEEeCC------c-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTDA------G-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~------g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      =.+.+|.|....||+....+      + .+.+|.-....    ...+.+|+.++..|..+  -.+.+++.......+..+
T Consensus        68 l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hh--pnIV~l~g~~~~~~~~~~  145 (353)
T 4ase_A           68 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH--LNVVNLLGACTKPGGPLM  145 (353)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECCTTSCCE
T ss_pred             EeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCC--CcEEEEEEEEEecCCEEE
Confidence            35779999999999987421      1 46677765421    23467899999888653  235666665432134579


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|+.+
T Consensus       146 iV~Ey~~~G~L  156 (353)
T 4ase_A          146 VIVEFCKFGNL  156 (353)
T ss_dssp             EEEECCTTEEH
T ss_pred             EEEEcCCCCCH
Confidence            99999999743

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=98.17  E-value=9.6e-06  Score=70.13  Aligned_cols=75  Identities=15%  Similarity=-0.042  Sum_probs=52.1

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      +.+|.|..+.||++...  +..+++|+....   ....+.+|+..+..+..+  -.+++++..... .+..+++||+++|
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h--~~i~~~~~~~~~-~~~~~lv~e~~~~   95 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGH--RNVLELIEFFEE-EDRFYLVFEKMRG   95 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCC--TTBCCEEEEEEE-TTEEEEEEECCTT
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCC--CCeeeEEEEEee-CCEEEEEEEcCCC
Confidence            35788888999999753  337899987542   234567888887765433  345666665443 5688999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        96 ~~L   98 (316)
T 2ac3_A           96 GSI   98 (316)
T ss_dssp             CBH
T ss_pred             CcH
Confidence            643

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.17  E-value=2e-05  Score=68.36  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=51.8

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ...+|.|..+.||+....++ .+++|......   ...+..|+..++.+..   -.+++++..... .+..+++||+++|
T Consensus        44 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~~~  119 (321)
T 2qkw_B           44 KFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRH---PHLVSLIGFCDE-RNEMILIYKYMEN  119 (321)
T ss_dssp             CCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCC---TTBCCEEEECCC-TTCCEEEEECCTT
T ss_pred             cceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCC---CCEeeEEEEEcC-CCeEEEEEEcCCC
Confidence            45688888899999987545 78899876432   2345677776655532   245566665443 5678999999999


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      .++
T Consensus       120 ~~L  122 (321)
T 2qkw_B          120 GNL  122 (321)
T ss_dssp             CBT
T ss_pred             CcH
Confidence            766

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.17  E-value=8.1e-06  Score=71.46  Aligned_cols=78  Identities=23%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             ceeeeeeeCCccccceEEEEeCC--c----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGTDA--G----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~--g----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ...-.+.+|.|..+.||++....  +    .+++|+.....    ...+..|+.+++.|..   -.+++++..... .+.
T Consensus        45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~  120 (333)
T 1mqb_A           45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH---HNIIRLEGVISK-YKP  120 (333)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEECS-SSS
T ss_pred             HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCC---CCCCcEEEEEec-CCC
Confidence            34445778888889999987532  2    48899876432    2335677777766632   245666655433 467


Q ss_pred             eEEEEecccCCC
Q 022304           93 SYIIMEFIEFGS  104 (299)
Q Consensus        93 ~~~v~e~l~G~~  104 (299)
                      .+++||+++|..
T Consensus       121 ~~lv~e~~~~~~  132 (333)
T 1mqb_A          121 MMIITEYMENGA  132 (333)
T ss_dssp             EEEEEECCTTEE
T ss_pred             cEEEEeCCCCCc
Confidence            899999999863

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.17  E-value=1.1e-05  Score=74.41  Aligned_cols=77  Identities=9%  Similarity=-0.040  Sum_probs=53.9

Q ss_pred             ceeeeeeeCCccccceEEEEeC--CccEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           23 HITKICPVGGGCINLASRYGTD--AGSFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ...-.+.+|.|....||++...  +..|++|+... .....+..|..+++.|...  -.+|.+..++.. ....+++|++
T Consensus         8 ~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~--~~i~~i~~~~~~-~~~~~lvme~   84 (483)
T 3sv0_A            8 KFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGG--TGIPNVRWFGVE-GDYNVLVMDL   84 (483)
T ss_dssp             TEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTS--TTCCCEEEEEEE-TTEEEEEEEC
T ss_pred             cEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCC--CCCCeEEEEEee-CCEEEEEEEC
Confidence            3344567888888999999853  33789998653 2335578999999999763  345555554433 5678999999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      + |.
T Consensus        85 ~-g~   87 (483)
T 3sv0_A           85 L-GP   87 (483)
T ss_dssp             C-CC
T ss_pred             C-CC
Confidence            9 54

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=98.16  E-value=9.8e-06  Score=70.05  Aligned_cols=76  Identities=20%  Similarity=0.142  Sum_probs=54.3

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ..-.+.+|.|..+.||+....+..+++|..... ....+..|...++.+..   -.+.+++...   .+..+++|||++|
T Consensus        10 ~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~---~~~~~lv~e~~~~   83 (307)
T 2eva_A           10 IEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNH---PNIVKLYGAC---LNPVCLVMEYAEG   83 (307)
T ss_dssp             EEEEEEEECCSSSEEEEEEETTEEEEEEECSSTTHHHHHHHHHHHHHHCCC---TTBCCEEEBC---TTTTEEEEECCTT
T ss_pred             eeeeeEeecCCCceEEEEEECCeeEEEEEecChhHHHHHHHHHHHHhcCCC---CCcCeEEEEE---cCCcEEEEEcCCC
Confidence            344577888888999999887778999988643 23456788888877742   2355566554   2457999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus        84 ~~L   86 (307)
T 2eva_A           84 GSL   86 (307)
T ss_dssp             CBH
T ss_pred             CCH
Confidence            643

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.15  E-value=1e-05  Score=73.95  Aligned_cols=74  Identities=20%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.+|.|..+.||+....++ .+.+|.....  ....+.+|+.+++.|..   -.+.+++....  .+..+++||+++|.
T Consensus       189 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~--~~~~~iv~e~~~~g  263 (452)
T 1fmk_A          189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH---EKLVQLYAVVS--EEPIYIVTEYMSKG  263 (452)
T ss_dssp             EEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCC---TTBCCEEEEEC--SSSCEEEECCCTTC
T ss_pred             eeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCC---CCEeeEEEEEc--CCceEEEehhhcCC
Confidence            46688888899999987654 7899987643  23557889999988853   24566665543  36789999999987


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      ++
T Consensus       264 sL  265 (452)
T 1fmk_A          264 SL  265 (452)
T ss_dssp             BH
T ss_pred             CH
Confidence            43

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=98.15  E-value=1.3e-05  Score=68.07  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             eeeeeeeCCccccceEEEEeCC--c---cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           24 ITKICPVGGGCINLASRYGTDA--G---SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~--g---~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ..-.+.++.|..+.||++...+  +   .+++|......    ...+..|..+++.|..   -.+++++....  .+..+
T Consensus        14 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~--~~~~~   88 (281)
T 3cc6_A           14 VVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDH---PHIVKLIGIIE--EEPTW   88 (281)
T ss_dssp             EEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCC---TTBCCEEEEEC--SSSCE
T ss_pred             eEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCC---CCcceEEEEEc--CCCCE
Confidence            3445778888889999987432  2   48889876531    2456789988888842   34566665543  35679


Q ss_pred             EEEecccCCC
Q 022304           95 IIMEFIEFGS  104 (299)
Q Consensus        95 ~v~e~l~G~~  104 (299)
                      ++|++++|..
T Consensus        89 ~v~e~~~~~~   98 (281)
T 3cc6_A           89 IIMELYPYGE   98 (281)
T ss_dssp             EEEECCTTCB
T ss_pred             EEEecCCCCC
Confidence            9999999864

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=98.15  E-value=1.1e-05  Score=72.62  Aligned_cols=135  Identities=16%  Similarity=0.117  Sum_probs=82.0

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCc
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGG   92 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~   92 (299)
                      .-++.||.|..+.||++... .| .|.+|+-....     ...+.+|+.+|+.|..   -.+.+++......     .+.
T Consensus        57 ~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~H---pnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           57 EIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKH---DNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCC---TTBCCEEEECCCSSCTTTCCC
T ss_pred             EEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCC---CCcceEeeeeecccccccCCE
Confidence            34578999999999999863 34 78889765321     1335679999988853   2344455432211     357


Q ss_pred             eEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCC
Q 022304           93 SYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGD  172 (299)
Q Consensus        93 ~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (299)
                      .|+||||++|.        +-.   .+++...    +                   ...      .+             
T Consensus       134 ~~ivmE~~~g~--------L~~---~i~~~~~----l-------------------~~~------~~-------------  160 (398)
T 4b99_A          134 VYVVLDLMESD--------LHQ---IIHSSQP----L-------------------TLE------HV-------------  160 (398)
T ss_dssp             EEEEEECCSEE--------HHH---HHTSSSC----C-------------------CHH------HH-------------
T ss_pred             EEEEEeCCCCC--------HHH---HHHhcCC----C-------------------CHH------HH-------------
Confidence            79999999773        111   1211110    0                   000      01             


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          173 STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       173 ~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                         ...+.+++..+..+.     ...+||+|++|+|||++.++...|+||.
T Consensus       161 ---~~~~~qil~al~ylH-----~~~iiHRDlKP~NIl~~~~~~~Ki~DFG  203 (398)
T 4b99_A          161 ---RYFLYQLLRGLKYMH-----SAQVIHRDLKPSNLLVNENCELKIGDFG  203 (398)
T ss_dssp             ---HHHHHHHHHHHHHHH-----HTTCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred             ---HHHHHHHHHHHHHHH-----HCcCcCCCcCccccccCCCCCEEEeecc
Confidence               112223334444332     2478999999999999988888999985

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=98.15  E-value=1.3e-05  Score=68.47  Aligned_cols=76  Identities=21%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -.+.+|.|..+.||++.... + .+++|.....    ....+.+|+.+++.|..   -.+++++..... .+..+++||+
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~e~  101 (285)
T 3is5_A           26 FKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDH---PNIIKIFEVFED-YHNMYIVMET  101 (285)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEEEEECC
T ss_pred             ecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCC---chHHhHHHheec-CCeEEEEEEe
Confidence            35778888889999998643 3 7888876431    23557788888877742   345666665443 5678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus       102 ~~~~~L  107 (285)
T 3is5_A          102 CEGGEL  107 (285)
T ss_dssp             CSCCBH
T ss_pred             CCCCcH
Confidence            998643

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=98.15  E-value=1.1e-05  Score=71.16  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=53.5

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC--------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS--------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~--------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .+.+|.|..+.||++... ++ .|.+|+...        .....+.+|+.+++.|..   -.+++++..... .+..+++
T Consensus        29 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~~~~~~~~-~~~~~lv  104 (351)
T 3c0i_A           29 CEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH---PHIVELLETYSS-DGMLYMV  104 (351)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEEE
T ss_pred             eeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCC---CCCCcEEEEEEe-CCEEEEE
Confidence            567888888999999763 33 788997631        123557889999888842   345666655443 5788999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+++|..+
T Consensus       105 ~e~~~g~~L  113 (351)
T 3c0i_A          105 FEFMDGADL  113 (351)
T ss_dssp             EECCSSCBH
T ss_pred             EeCCCCCCH
Confidence            999998743

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=98.15  E-value=3.9e-06  Score=73.27  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=55.5

Q ss_pred             eeeeeeeCCccccceEEEEeCC-c------cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           24 ITKICPVGGGCINLASRYGTDA-G------SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-g------~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ..-.+.+|.|..+.||++.... +      .+.+|......    ...+..|..+++.|..+  -.+++++..... .+.
T Consensus        48 ~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--~~iv~~~~~~~~-~~~  124 (333)
T 2i1m_A           48 LQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQH--ENIVNLLGACTH-GGP  124 (333)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECS-SSS
T ss_pred             ceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCC--CCeeeEEEEEec-CCc
Confidence            3445778888889999998532 1      58889876432    24467899999888544  346667765543 567


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+++|.++
T Consensus       125 ~~lv~e~~~~g~L  137 (333)
T 2i1m_A          125 VLVITEYCCYGDL  137 (333)
T ss_dssp             CEEEEECCTTEEH
T ss_pred             eEEEEecCCCCcH
Confidence            8999999998643

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=98.15  E-value=6e-06  Score=72.33  Aligned_cols=75  Identities=9%  Similarity=-0.082  Sum_probs=51.2

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.+|.|..+.||++...+ + .+++|+....      ....+..|+.+++.|..   -.+++++..... .+..+++|
T Consensus        45 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~  120 (335)
T 2owb_A           45 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAH---QHVVGFHGFFED-NDFVFVVL  120 (335)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCC---CCCCeEEEEEec-CCeEEEEE
Confidence            35778888889999998753 3 6788886531      12446677777776632   245666655443 46789999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      |+++|..
T Consensus       121 e~~~~~~  127 (335)
T 2owb_A          121 ELCRRRS  127 (335)
T ss_dssp             CCCTTCB
T ss_pred             ecCCCCC
Confidence            9999863

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=98.14  E-value=7.2e-06  Score=71.57  Aligned_cols=76  Identities=20%  Similarity=0.056  Sum_probs=51.4

Q ss_pred             eeeeeCCccccceEEEEeC-Cc----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      -.+.+|.|..+.||+.... .+    .+++|......    ...+..|+.+++.|. +  -.+++++..... .+..+++
T Consensus        53 i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~iv~~~~~~~~-~~~~~lv  128 (325)
T 3kul_A           53 IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFD-H--PNIIRLEGVVTR-GRLAMIV  128 (325)
T ss_dssp             EEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEECG-GGCCEEE
T ss_pred             EeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEe-CCccEEE
Confidence            3567888888999998863 22    48899876421    234667887777764 2  345666665433 4578999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+++|..+
T Consensus       129 ~e~~~~~~L  137 (325)
T 3kul_A          129 TEYMENGSL  137 (325)
T ss_dssp             EECCTTCBH
T ss_pred             eeCCCCCcH
Confidence            999998743

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=98.14  E-value=1.2e-05  Score=72.72  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=54.4

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           23 HITKICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ...-+..+|.|..+.||++.... + .|.+|+...      .....+..|..++..+..   -.+.+++..... .+..+
T Consensus        70 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~h---p~Iv~l~~~~~~-~~~~~  145 (410)
T 3v8s_A           70 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS---PWVVQLFYAFQD-DRYLY  145 (410)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEE
T ss_pred             ccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCC---CCCCeEEEEEEE-CCEEE
Confidence            34446788999899999998743 3 688887642      233557789988877742   245566655443 56789


Q ss_pred             EEEecccCCC
Q 022304           95 IIMEFIEFGS  104 (299)
Q Consensus        95 ~v~e~l~G~~  104 (299)
                      ++|||++|..
T Consensus       146 lV~E~~~gg~  155 (410)
T 3v8s_A          146 MVMEYMPGGD  155 (410)
T ss_dssp             EEECCCTTEE
T ss_pred             EEEeCCCCCc
Confidence            9999999863

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=98.14  E-value=8.9e-06  Score=71.85  Aligned_cols=77  Identities=13%  Similarity=0.025  Sum_probs=51.2

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC---Cc-----------chHHHHHHHHHHHHhcCCCCCccceeecc
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI---GP-----------SMFEGEALGLGAMYETRTIRAPRPFKVGA   87 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~---~~-----------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~   87 (299)
                      .-.-.+.+|.|..+.||++...+| .+++|.....   ..           ..+.+|+.+++.|..   -.+.+++....
T Consensus        23 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~   99 (362)
T 3pg1_A           23 PYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHH---PNILGLRDIFV   99 (362)
T ss_dssp             SCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCC---TTBCCCSEEEE
T ss_pred             ceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCC---cCccceeeeEE
Confidence            444567888898899999977656 7888977431   10           346788988888853   23444444321


Q ss_pred             c---C-CCceEEEEecccC
Q 022304           88 L---P-TGGSYIIMEFIEF  102 (299)
Q Consensus        88 ~---~-~~~~~~v~e~l~G  102 (299)
                      .   . ....+++||+++|
T Consensus       100 ~~~~~~~~~~~lv~e~~~~  118 (362)
T 3pg1_A          100 HFEEPAMHKLYLVTELMRT  118 (362)
T ss_dssp             ECCTTTCCEEEEEEECCSE
T ss_pred             eccCCCcceEEEEEccCCC
Confidence            1   1 3467999999987

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=98.13  E-value=2.3e-05  Score=67.58  Aligned_cols=138  Identities=13%  Similarity=0.076  Sum_probs=80.9

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.++.|..+.||++... +| .+++|+....   .   ...+..|+..++.|..   -.+++++..... .+..+++|
T Consensus        36 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~  111 (310)
T 2wqm_A           36 IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH---PNVIKYYASFIE-DNELNIVL  111 (310)
T ss_dssp             EEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEEEE-TTEEEEEE
T ss_pred             EEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEEc-CCcEEEEE
Confidence            3577888888999999863 34 7899987531   1   2345677777776642   245566655433 56889999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      |+++|..+       ...+.........                      -.+..      +                ..
T Consensus       112 e~~~~~~L-------~~~l~~~~~~~~~----------------------~~~~~------~----------------~~  140 (310)
T 2wqm_A          112 ELADAGDL-------SRMIKHFKKQKRL----------------------IPERT------V----------------WK  140 (310)
T ss_dssp             ECCCSCBH-------HHHHHHHHHTTCC----------------------CCHHH------H----------------HH
T ss_pred             ecCCCCCH-------HHHHHHhcccccC----------------------CCHHH------H----------------HH
Confidence            99998643       2333332221110                      01100      0                01


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+.+++..+..+.     ...++|||++|+||+++.++.+.|+|+.
T Consensus       141 i~~qi~~~l~~LH-----~~~i~H~dl~p~NIl~~~~~~~kl~Dfg  181 (310)
T 2wqm_A          141 YFVQLCSALEHMH-----SRRVMHRDIKPANVFITATGVVKLGDLG  181 (310)
T ss_dssp             HHHHHHHHHHHHH-----HTTCCCCCCCGGGEEECTTSCEEECCC-
T ss_pred             HHHHHHHHHHHHh-----hCCeeCCCCcHHHEEEcCCCCEEEEecc
Confidence            1122233333222     2379999999999999988888899974

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.13  E-value=9.6e-06  Score=75.13  Aligned_cols=74  Identities=22%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      .+.+|.|....||+..... + .+.+|.....  ....+..|+.+++.|..   -.+.+++..... .+..+++||+++|
T Consensus       225 ~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---pniv~l~~~~~~-~~~~~lv~E~~~~  300 (495)
T 1opk_A          225 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH---PNLVQLLGVCTR-EPPFYIITEFMTY  300 (495)
T ss_dssp             EEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCC---TTBCCEEEEECS-SSSCEEEEECCTT
T ss_pred             eeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCC---CCEeeEEEEEec-CCcEEEEEEccCC
Confidence            4678889889999988753 3 7899987643  23557789998888852   345666665443 4678999999998


Q ss_pred             CC
Q 022304          103 GS  104 (299)
Q Consensus       103 ~~  104 (299)
                      ..
T Consensus       301 g~  302 (495)
T 1opk_A          301 GN  302 (495)
T ss_dssp             CB
T ss_pred             CC
Confidence            63

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=98.13  E-value=1.2e-05  Score=70.19  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             eeeeeeCCccccceEEEEeCC-c-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.+|.|..+.||++.... + .+++|......     ...+..|..+++.+..   -.+++++..... .+..+++|
T Consensus        28 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~  103 (331)
T 4aaa_A           28 ENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRH---ENLVNLLEVCKK-KKRWYLVF  103 (331)
T ss_dssp             EEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEEEE
T ss_pred             eeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCC---CCEeeEEEEeec-CCEEEEEE
Confidence            346788999899999998753 3 78889764321     1335578888887752   346667765543 56789999


Q ss_pred             ecccCC
Q 022304           98 EFIEFG  103 (299)
Q Consensus        98 e~l~G~  103 (299)
                      |+++|.
T Consensus       104 e~~~~~  109 (331)
T 4aaa_A          104 EFVDHT  109 (331)
T ss_dssp             ECCSEE
T ss_pred             ecCCcc
Confidence            999985

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.13  E-value=9.9e-06  Score=75.78  Aligned_cols=74  Identities=20%  Similarity=0.237  Sum_probs=54.2

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.+|.|....||+....++ .+++|+....  ....+..|+.+++.|..   -.+.+++....  .+..+++||+++|.
T Consensus       272 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~--~~~~~lv~e~~~~g  346 (535)
T 2h8h_A          272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH---EKLVQLYAVVS--EEPIYIVTEYMSKG  346 (535)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCC---TTBCCEEEEEC--SSSCEEEECCCTTE
T ss_pred             heecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCC---CCEeeEEEEEe--eccceEeeehhcCC
Confidence            46688888899999987654 7899987643  23557889999988853   24556665543  36789999999986


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      .+
T Consensus       347 sL  348 (535)
T 2h8h_A          347 SL  348 (535)
T ss_dssp             EH
T ss_pred             cH
Confidence            43

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.12  E-value=1.7e-05  Score=68.86  Aligned_cols=79  Identities=15%  Similarity=0.115  Sum_probs=52.6

Q ss_pred             eeeeeeeCCccccceEEEEe--CCc-cEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeeccc----CCC
Q 022304           24 ITKICPVGGGCINLASRYGT--DAG-SFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL----PTG   91 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~--~~g-~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~----~~~   91 (299)
                      -.-++.++.|..+.||++..  .++ .+++|+...     .....+..|..+++.|.....-.+++++.....    ..+
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   92 (326)
T 1blx_A           13 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRET   92 (326)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEE
T ss_pred             eeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCc
Confidence            34467888888899999986  344 577887642     123456789999998874212345666654321    135


Q ss_pred             ceEEEEecccC
Q 022304           92 GSYIIMEFIEF  102 (299)
Q Consensus        92 ~~~~v~e~l~G  102 (299)
                      ..+++||+++|
T Consensus        93 ~~~lv~e~~~~  103 (326)
T 1blx_A           93 KLTLVFEHVDQ  103 (326)
T ss_dssp             EEEEEEECCSC
T ss_pred             eEEEEEecCCC
Confidence            67999999986

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=98.12  E-value=9.5e-06  Score=70.72  Aligned_cols=75  Identities=15%  Similarity=0.075  Sum_probs=53.3

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      -.+.+|.|..+.||++.... + .+++|+.....  ...+.+|+.+++.+..   -.+++++..... .+..+++||+++
T Consensus         9 ~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~~~~~~~~-~~~~~lv~e~~~   84 (321)
T 1tki_A            9 IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARH---RNILHLHESFES-MEELVMIFEFIS   84 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCC---TTBCCEEEEEEE-TTEEEEEECCCC
T ss_pred             eeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCC---CCCCeEeEEEec-CCEEEEEEEeCC
Confidence            45678888889999998643 3 78888876432  3456789988887742   245666655433 568899999999


Q ss_pred             CCC
Q 022304          102 FGS  104 (299)
Q Consensus       102 G~~  104 (299)
                      |..
T Consensus        85 g~~   87 (321)
T 1tki_A           85 GLD   87 (321)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            863

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=98.12  E-value=1.3e-05  Score=69.10  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.+|.|..+.||++.... | .+++|......     ...+.+|+..++.+..   -.+++++..... .+..+++||
T Consensus         7 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e   82 (311)
T 4agu_A            7 KIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKH---PNLVNLLEVFRR-KRRLHLVFE   82 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEEEEE
T ss_pred             EeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCC---CCccchhheeec-CCeEEEEEE
Confidence            45678888889999998743 4 78889765421     2335578888877753   345666665443 568899999


Q ss_pred             cccCC
Q 022304           99 FIEFG  103 (299)
Q Consensus        99 ~l~G~  103 (299)
                      +++|.
T Consensus        83 ~~~~~   87 (311)
T 4agu_A           83 YCDHT   87 (311)
T ss_dssp             CCSEE
T ss_pred             eCCCc
Confidence            99985

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.12  E-value=6.9e-06  Score=72.41  Aligned_cols=74  Identities=7%  Similarity=-0.027  Sum_probs=52.2

Q ss_pred             eeeeCCccccceEEEEeCC---------c-cEEEEecCCCCcchHHHHHHHHHHHHhc------------CCCCCcccee
Q 022304           27 ICPVGGGCINLASRYGTDA---------G-SFFVKTNRSIGPSMFEGEALGLGAMYET------------RTIRAPRPFK   84 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~---------g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~------------~~~~vP~~~~   84 (299)
                      .+.++.|..+.||++....         + .+++|+....  ..+..|..+++.+...            ....+|+++.
T Consensus        47 ~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~  124 (352)
T 2jii_A           47 KSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMG  124 (352)
T ss_dssp             EEEEEEETTEEEEEEEECC-----------CEEEEEEETT--STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCE
T ss_pred             EEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhh
Confidence            4778888889999998642         3 7999998653  4577888888877421            1234667776


Q ss_pred             ecccCCCceEEEEecccCC
Q 022304           85 VGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        85 ~~~~~~~~~~~v~e~l~G~  103 (299)
                      ......+..+++||++ |.
T Consensus       125 ~~~~~~~~~~lv~e~~-~~  142 (352)
T 2jii_A          125 FGVHQDKYRFLVLPSL-GR  142 (352)
T ss_dssp             EEEETTTEEEEEEECC-CE
T ss_pred             ccccCCcEEEEEecCC-Cc
Confidence            6544346789999999 65

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=98.12  E-value=1.2e-05  Score=68.37  Aligned_cols=77  Identities=13%  Similarity=0.006  Sum_probs=53.1

Q ss_pred             eeeeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ..-.+.++.|..+.||++.... + .+++|+...      .....+..|..+++.+..   -.+++++..... .+..++
T Consensus        16 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~l   91 (284)
T 2vgo_A           16 FDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH---PNILRMYNYFHD-RKRIYL   91 (284)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEEE
T ss_pred             ceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCC---CCEeeEEEEEEc-CCEEEE
Confidence            3345778888889999998753 3 688898642      123456788888877742   245666665443 567899


Q ss_pred             EEecccCCC
Q 022304           96 IMEFIEFGS  104 (299)
Q Consensus        96 v~e~l~G~~  104 (299)
                      +||+++|.+
T Consensus        92 v~e~~~~~~  100 (284)
T 2vgo_A           92 MLEFAPRGE  100 (284)
T ss_dssp             EECCCTTEE
T ss_pred             EEEeCCCCc
Confidence            999998863

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.12  E-value=2.3e-05  Score=68.15  Aligned_cols=140  Identities=11%  Similarity=0.040  Sum_probs=83.0

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecc-------cCCCce
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGA-------LPTGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~-------~~~~~~   93 (299)
                      -.+.++.|..+.||++...  +..|++|......   ...+..|...+..+..+  -.+.+++....       ......
T Consensus        32 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h--~~iv~~~~~~~~~~~~~~~~~~~~  109 (337)
T 3ll6_A           32 VRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGH--PNIVQFCSAASIGKEESDTGQAEF  109 (337)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTS--TTBCCEEEEEEECTTTSTTSSEEE
T ss_pred             EEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccC--CChhhccccccccccccccCCceE
Confidence            3567888888999999863  3378999764321   24467888888888644  23455554331       102457


Q ss_pred             EEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCCh
Q 022304           94 YIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDS  173 (299)
Q Consensus        94 ~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (299)
                      +++|++++|.        +...+.++.....    +                   .+..      +              
T Consensus       110 ~lv~e~~~g~--------L~~~l~~~~~~~~----~-------------------~~~~------~--------------  138 (337)
T 3ll6_A          110 LLLTELCKGQ--------LVEFLKKMESRGP----L-------------------SCDT------V--------------  138 (337)
T ss_dssp             EEEEECCSEE--------HHHHHHHHHTTCS----C-------------------CHHH------H--------------
T ss_pred             EEEEEecCCC--------HHHHHHHhhccCC----C-------------------CHHH------H--------------
Confidence            8999999763        2233333211110    0                   1110      0              


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          174 TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       174 ~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                        ...+.+++..+..+..   ..+.++|+|++|.|||+++++.+.|+|+.
T Consensus       139 --~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg  183 (337)
T 3ll6_A          139 --LKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQGTIKLCDFG  183 (337)
T ss_dssp             --HHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTTSCEEBCCCT
T ss_pred             --HHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCCCCEEEecCc
Confidence              0112233333333322   23459999999999999988888999985

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=98.11  E-value=6.6e-06  Score=70.98  Aligned_cols=79  Identities=14%  Similarity=0.101  Sum_probs=52.4

Q ss_pred             ceeeeeeeCCccccceEEEEeC------C-ccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD------A-GSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~------~-g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-.+.++.|..+.||+++..      + ..+++|+.....    ...+..|+.+++.|. +  -.+++++..... .+
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h--p~iv~~~~~~~~-~~   99 (314)
T 2ivs_A           24 NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVN-H--PHVIKLYGACSQ-DG   99 (314)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEECS-SS
T ss_pred             heeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCC-C--CceeeEEEEEec-CC
Confidence            3444577888888999999751      2 268889886532    134566777776663 2  235556655433 56


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++||+++|.++
T Consensus       100 ~~~lv~e~~~~~~L  113 (314)
T 2ivs_A          100 PLLLIVEYAKYGSL  113 (314)
T ss_dssp             SCEEEEECCTTCBH
T ss_pred             ceEEEEeecCCCCH
Confidence            78999999998743

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=98.11  E-value=8.1e-06  Score=71.94  Aligned_cols=81  Identities=17%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             ceeeeeeeCCccccceEEEEe------CCc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGT------DAG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~------~~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-.+.+|.|..+.||++..      ..+ .+.+|+.....    ...+..|..++..|..+  -.+.+++.......+
T Consensus        23 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--pniv~~~~~~~~~~~  100 (359)
T 3vhe_A           23 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH--LNVVNLLGACTKPGG  100 (359)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECSTTS
T ss_pred             ceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCC--cceeeeeeeeecCCC
Confidence            445567889898899999972      222 68899876432    23467899999888654  345666665433234


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++|||++|..+
T Consensus       101 ~~~iv~e~~~~g~L  114 (359)
T 3vhe_A          101 PLMVIVEFCKFGNL  114 (359)
T ss_dssp             CCEEEEECCTTEEH
T ss_pred             ceEEEEEecCCCcH
Confidence            58999999998643

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.11  E-value=1.3e-05  Score=73.34  Aligned_cols=74  Identities=22%  Similarity=0.136  Sum_probs=52.6

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.+|.|..+.||+....++ .+.+|.....  ....+..|+.+++.|..   -.+.+++....  ....+++||+++|.
T Consensus       193 ~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~l~~~~~--~~~~~lv~e~~~~g  267 (454)
T 1qcf_A          193 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQH---DKLVKLHAVVT--KEPIYIITEFMAKG  267 (454)
T ss_dssp             EEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCC---TTBCCEEEEEC--SSSCEEEECCCTTC
T ss_pred             EEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCC---CCEeeEEEEEe--CCccEEEEeecCCC
Confidence            46788898899999987655 7889987643  23557788888877742   23445555433  45789999999987


Q ss_pred             CC
Q 022304          104 SS  105 (299)
Q Consensus       104 ~~  105 (299)
                      .+
T Consensus       268 ~L  269 (454)
T 1qcf_A          268 SL  269 (454)
T ss_dssp             BH
T ss_pred             cH
Confidence            43

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=98.10  E-value=1.3e-05  Score=69.51  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=42.8

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.+|.|..+.||++... .| .+++|.....    ....+.+|+.+++.|..   -.+++++..... .+..+++||+
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~e~   84 (317)
T 2pmi_A            9 QLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH---ENIVRLYDVIHT-ENKLTLVFEF   84 (317)
T ss_dssp             ----------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCB---TTBCCEEEEECC-TTEEEEEEEC
T ss_pred             EeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCC---CCcceEEEEEEE-CCeEEEEEEe
Confidence            4567888888999999764 33 7888876431    23456778888777742   245566655433 5688999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        85 ~~~   87 (317)
T 2pmi_A           85 MDN   87 (317)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            986

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=98.10  E-value=1.3e-05  Score=69.37  Aligned_cols=141  Identities=15%  Similarity=0.134  Sum_probs=82.1

Q ss_pred             eeeeeeeCCccccceEEEEe-CCc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEE
Q 022304           24 ITKICPVGGGCINLASRYGT-DAG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~   95 (299)
                      ..-++.++.|..+.||++.. .++ .+++|+....   ....+..|+.+++.+..   -.+++++......   ....++
T Consensus        31 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           31 YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNH---PNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             EEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCC---TTBCCCCEEEEEEETTEEEEEE
T ss_pred             EEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCC---CCeeeEEEEEEeccCCCceeEE
Confidence            33467788898899999986 333 7889976432   23456778888777742   2355555543211   246789


Q ss_pred             EEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHH
Q 022304           96 IMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTI  175 (299)
Q Consensus        96 v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (299)
                      +||+++|..+       ...+.+......+                      -++..      +                
T Consensus       108 v~e~~~~~~L-------~~~l~~~~~~~~~----------------------~~~~~------~----------------  136 (317)
T 2buj_A          108 LLPFFKRGTL-------WNEIERLKDKGNF----------------------LTEDQ------I----------------  136 (317)
T ss_dssp             EEECCTTCBH-------HHHHHHHHTTTCC----------------------CCHHH------H----------------
T ss_pred             EEEeCCCCcH-------HHHHHHHHhcCCC----------------------CCHHH------H----------------
Confidence            9999999743       2233332211110                      01110      0                


Q ss_pred             HHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          176 YQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       176 ~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ...+.++++.+..+..     ..++|+|++|.||+++.++.+.|+|+.
T Consensus       137 ~~i~~qi~~~L~~LH~-----~~ivH~dlkp~NIl~~~~~~~kl~dfg  179 (317)
T 2buj_A          137 LWLLLGICRGLEAIHA-----KGYAHRDLKPTNILLGDEGQPVLMDLG  179 (317)
T ss_dssp             HHHHHHHHHHHHHHHH-----TTEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             HHHHHHHHHHHHHHHh-----CCcccCCCCHHHEEEcCCCCEEEEecC
Confidence            0112223333332222     379999999999999888888999975

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=98.10  E-value=1.3e-05  Score=67.82  Aligned_cols=75  Identities=13%  Similarity=0.033  Sum_probs=52.2

Q ss_pred             eeeeeCCccccceEEEEeCCc--cEEEEecCC---CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTDAG--SFFVKTNRS---IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      -.+.+|.|..+.||++.....  .+++|....   .....+..|+.+++.|..   -.+++++..... .+..+++||++
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   88 (277)
T 3f3z_A           13 LENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDH---PNIIRLYETFED-NTDIYLVMELC   88 (277)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEEEEEECC
T ss_pred             eeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCC---CCEeeEEEEEec-CCeEEEEEecc
Confidence            346788888899999986543  677776643   233557789888887742   345666665443 56789999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|..
T Consensus        89 ~~~~   92 (277)
T 3f3z_A           89 TGGE   92 (277)
T ss_dssp             CSCB
T ss_pred             CCCc
Confidence            8863

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=98.10  E-value=1.5e-05  Score=70.03  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             eeeeeeeCCccccceEEEEeCCc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTDAG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.-++.+|.|..+.||++...++ .|++|+.....     ...+..|+.++..|..+ ...+++++.+... .+..+++|
T Consensus        11 y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~~~iv~~~~~~~~-~~~~~lv~   88 (343)
T 3dbq_A           11 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH-SDKIIRLYDYEIT-DQYIYMVM   88 (343)
T ss_dssp             EEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTT-CTTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhc-CCceEEEeeeEee-CCEEEEEE
Confidence            33457889999999999987655 68889765321     24467899999999754 2346777766543 56789999


Q ss_pred             eccc
Q 022304           98 EFIE  101 (299)
Q Consensus        98 e~l~  101 (299)
                      |+..
T Consensus        89 e~~~   92 (343)
T 3dbq_A           89 ECGN   92 (343)
T ss_dssp             CCCS
T ss_pred             eCCC
Confidence            9543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=98.10  E-value=1.5e-05  Score=67.17  Aligned_cols=78  Identities=18%  Similarity=-0.004  Sum_probs=53.0

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ...-.+.++.|..+.||++...+..+++|+....       ....+..|..+++.+..   -.+++++..... .+..++
T Consensus         8 ~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~l   83 (271)
T 3dtc_A            8 ELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKH---PNIIALRGVCLK-EPNLCL   83 (271)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCC---TTBCCEEEEECC-C--CEE
T ss_pred             heeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCC---CCEeeEEEEEec-CCceEE
Confidence            3444577888888999999887668999987532       12446778888877752   345666665443 467899


Q ss_pred             EEecccCCC
Q 022304           96 IMEFIEFGS  104 (299)
Q Consensus        96 v~e~l~G~~  104 (299)
                      +||+++|..
T Consensus        84 v~e~~~~~~   92 (271)
T 3dtc_A           84 VMEFARGGP   92 (271)
T ss_dssp             EEECCTTEE
T ss_pred             EEEcCCCCC
Confidence            999999863

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=98.10  E-value=9.2e-06  Score=69.54  Aligned_cols=78  Identities=9%  Similarity=-0.079  Sum_probs=52.5

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-c-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           23 HITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      .-.-.+.+|.|..+.||++...+ + .+.+|+....      ....+..|..+++.+..   -.+++++..... .+..+
T Consensus        16 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~   91 (294)
T 2rku_A           16 RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAH---QHVVGFHGFFED-NDFVF   91 (294)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEE
T ss_pred             ceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCC---CCEeeeeeeecc-CCEEE
Confidence            34446778888889999998753 3 6788876531      12445677777766632   345666655443 46789


Q ss_pred             EEEecccCCC
Q 022304           95 IIMEFIEFGS  104 (299)
Q Consensus        95 ~v~e~l~G~~  104 (299)
                      ++||+++|..
T Consensus        92 lv~e~~~~~~  101 (294)
T 2rku_A           92 VVLELCRRRS  101 (294)
T ss_dssp             EEEECCTTCB
T ss_pred             EEEecCCCCC
Confidence            9999999863

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=98.10  E-value=1.1e-05  Score=69.85  Aligned_cols=79  Identities=19%  Similarity=0.142  Sum_probs=51.5

Q ss_pred             ceeeeeeeCCccccceEEEEeC-------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD-------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-.+.+|.|..+.||+....       +..+++|......    ...+..|..+++.+..   -.+++++..... .+
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~  101 (322)
T 1p4o_A           26 KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNC---HHVVRLLGVVSQ-GQ  101 (322)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCC---TTBCCEEEEECS-SS
T ss_pred             heeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCC---CCEeeeEEEEcc-CC
Confidence            3444677888888999997643       2368899876432    1235567766666532   245666655433 46


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++||+++|.++
T Consensus       102 ~~~lv~e~~~~~~L  115 (322)
T 1p4o_A          102 PTLVIMELMTRGDL  115 (322)
T ss_dssp             SCEEEEECCTTCBH
T ss_pred             ccEEEEEeCCCCcH
Confidence            78999999998744

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=98.10  E-value=1.8e-05  Score=67.17  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=53.2

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC---------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI---------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -.+.++.|..+.||++...  +..+++|+....         ....+.+|+.+++.|..   -.+++++..... .+..+
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~-~~~~~   84 (283)
T 3bhy_A            9 MGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRH---PNIITLHDIFEN-KTDVV   84 (283)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEE
T ss_pred             hHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCC---CCeeehhheecC-CCeEE
Confidence            4567888888999999875  337888876421         13457789988888853   245666655443 46789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+++|.++
T Consensus        85 lv~e~~~~~~L   95 (283)
T 3bhy_A           85 LILELVSGGEL   95 (283)
T ss_dssp             EEEECCCSCBH
T ss_pred             EEEeecCCCcH
Confidence            99999988643

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=98.10  E-value=4.2e-06  Score=72.99  Aligned_cols=73  Identities=12%  Similarity=0.081  Sum_probs=49.3

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.+|.|..+.||++... ++ .+++|+....    ....+.+|+.+++.|..   -.+++++..... .+..+++||+
T Consensus         6 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~   81 (324)
T 3mtl_A            6 KLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKH---ANIVTLHDIIHT-EKSLTLVFEY   81 (324)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCC---TTBCCEEEEEEC-SSCEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCC---CCCCeeeeEEee-CCEEEEEecc
Confidence            4577888988999999874 33 7888977532    11233467877766642   345666665443 5678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus        82 ~~~   84 (324)
T 3mtl_A           82 LDK   84 (324)
T ss_dssp             CSE
T ss_pred             ccc
Confidence            987

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=98.09  E-value=7.3e-06  Score=73.42  Aligned_cols=77  Identities=6%  Similarity=-0.028  Sum_probs=52.4

Q ss_pred             eeeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-+..+|.|..+.||++.... + .|.+|+...      .....+..|..+++.+. +  -.+++++..... .+..+++
T Consensus        18 ~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~-h--p~Iv~l~~~~~~-~~~~~lv   93 (384)
T 4fr4_A           18 EILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLE-H--PFLVNLWYSFQD-EEDMFMV   93 (384)
T ss_dssp             EEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCC-C--TTBCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEe-CCEEEEE
Confidence            345778999899999998743 3 688897642      12244667888887773 2  235555554433 5688999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |++++|..+
T Consensus        94 ~e~~~gg~L  102 (384)
T 4fr4_A           94 VDLLLGGDL  102 (384)
T ss_dssp             ECCCTTEEH
T ss_pred             EecCCCCcH
Confidence            999999743

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=98.09  E-value=2e-05  Score=67.06  Aligned_cols=144  Identities=17%  Similarity=0.119  Sum_probs=76.8

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcc--hHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPS--MFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~--~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ...-++.+|.|..+.||++... ++ .+++|+.......  ..+...+....+.....-.+++++..... .+..+++||
T Consensus         8 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~-~~~~~lv~e   86 (290)
T 3fme_A            8 DLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-EGDVWICME   86 (290)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSSEEEEEE
T ss_pred             hhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeec-cCCEEEEEe
Confidence            3445678888988999999873 34 7899987643211  11111111112222111234555554433 568899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      +++|.        +...+........+   +                   .+..      +                ...
T Consensus        87 ~~~~~--------l~~~l~~~~~~~~~---~-------------------~~~~------~----------------~~i  114 (290)
T 3fme_A           87 LMDTS--------LDKFYKQVIDKGQT---I-------------------PEDI------L----------------GKI  114 (290)
T ss_dssp             CCSEE--------HHHHHHHHHHTTCC---C-------------------CHHH------H----------------HHH
T ss_pred             hhccc--------hHHHHHHHHhcCCC---C-------------------CHHH------H----------------HHH
Confidence            99872        23333333222210   0                   1110      0                011


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+..    ...++|+|++|+||+++.++.+.|+|+.
T Consensus       115 ~~qi~~~l~~lH~----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T 3fme_A          115 AVSIVKALEHLHS----KLSVIHRDVKPSNVLINALGQVKMCDFG  155 (290)
T ss_dssp             HHHHHHHHHHHHH----HSCCCCCCCSGGGCEECTTCCEEBCCC-
T ss_pred             HHHHHHHHHHHhh----cCCeecCCCCHHHEEECCCCCEEEeecC
Confidence            1222332332221    1379999999999999988888899974

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=98.09  E-value=6.9e-06  Score=72.57  Aligned_cols=92  Identities=15%  Similarity=0.064  Sum_probs=58.7

Q ss_pred             hHHHHHHhc-CC----CcceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCC
Q 022304           10 PIREWILSE-GK----ATHITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIR   78 (299)
Q Consensus        10 ~i~~~l~~~-~~----~~~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~   78 (299)
                      .+..++... ..    .....-++.+|.|..+.||++... .+ .+++|+.....    ...+..|+.+++.+. +  -.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~   92 (360)
T 3eqc_A           16 RLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECN-S--PY   92 (360)
T ss_dssp             HHHHHHHHHHTCCCCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCC-C--TT
T ss_pred             hHHHHhhhhhcccccccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCC-C--CC
Confidence            455566533 11    234455678999989999999875 33 78888876431    234556776666553 2  24


Q ss_pred             CccceeecccCCCceEEEEecccCCCC
Q 022304           79 APRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        79 vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      +++++..... .+..+++||+++|..+
T Consensus        93 iv~~~~~~~~-~~~~~lv~e~~~~~~L  118 (360)
T 3eqc_A           93 IVGFYGAFYS-DGEISICMEHMDGGSL  118 (360)
T ss_dssp             BCCEEEEEEE-TTEEEEEECCCTTCBH
T ss_pred             EEEEeEEEEE-CCEEEEEEECCCCCCH
Confidence            5666655433 5678999999998643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=98.09  E-value=1.3e-05  Score=67.78  Aligned_cols=76  Identities=13%  Similarity=0.057  Sum_probs=52.5

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.++.|..+.||++...  +..+++|+...      .....+..|+..++.+..   -.+++++..... .+..+++|
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~   90 (276)
T 2h6d_A           15 LGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRH---PHIIKLYQVIST-PTDFFMVM   90 (276)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCC---CCEeEEEEEEec-CCeEEEEE
Confidence            3577888888999999864  33889998743      123456778887776642   345666665443 56889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|.++
T Consensus        91 e~~~~~~L   98 (276)
T 2h6d_A           91 EYVSGGEL   98 (276)
T ss_dssp             ECCCSCBH
T ss_pred             eccCCCcH
Confidence            99988643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=98.08  E-value=1.5e-05  Score=70.29  Aligned_cols=76  Identities=11%  Similarity=-0.004  Sum_probs=51.5

Q ss_pred             eeeeeeeCCccccceEEEEe-CCc-cEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGT-DAG-SFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ...++.+|.|..+.||++.. .++ .+++|......      ...+.+|+.+++.|..   -.+.+++..... .+..++
T Consensus        56 y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~-~~~~~l  131 (348)
T 1u5q_A           56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH---PNTIQYRGCYLR-EHTAWL  131 (348)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEE
T ss_pred             eeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCC---CCEeeEEEEEEE-CCeEEE
Confidence            34567899998899999985 334 78888765321      1345678888877742   234555554433 568899


Q ss_pred             EEecccCC
Q 022304           96 IMEFIEFG  103 (299)
Q Consensus        96 v~e~l~G~  103 (299)
                      +||+++|.
T Consensus       132 v~e~~~g~  139 (348)
T 1u5q_A          132 VMEYCLGS  139 (348)
T ss_dssp             EEECCSEE
T ss_pred             EEecCCCC
Confidence            99999873

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=98.08  E-value=1.4e-05  Score=68.62  Aligned_cols=77  Identities=17%  Similarity=0.087  Sum_probs=53.7

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ...++.++.|..+.||++... .+ .+++|+....    ....+..|+.+++.+..   -.+++++..... .+..+++|
T Consensus        24 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~   99 (303)
T 3a7i_A           24 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS---PYVTKYYGSYLK-DTKLWIIM   99 (303)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEEEE
T ss_pred             HHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCC---CCEeEEEEEEec-CCeEEEEE
Confidence            345678998888999999753 33 7889987532    23456778887777632   345666655433 56889999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      |+++|..
T Consensus       100 e~~~~~~  106 (303)
T 3a7i_A          100 EYLGGGS  106 (303)
T ss_dssp             ECCTTEE
T ss_pred             EeCCCCc
Confidence            9999863

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=98.08  E-value=2.8e-05  Score=67.68  Aligned_cols=78  Identities=13%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-----cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-----SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-----~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ...-++.+|.|..+.||++... ++     ++++|.....    ....+..|...+..+..   -.+++++....  .+.
T Consensus        14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~--~~~   88 (325)
T 3kex_A           14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDH---AHIVRLLGLCP--GSS   88 (325)
T ss_dssp             TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCC---TTBCCEEEEEC--BSS
T ss_pred             HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCC---CCcCeEEEEEc--CCc
Confidence            4556788999999999999753 33     2677765431    22445678877766632   34666666543  367


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++|++++|..+
T Consensus        89 ~~~v~e~~~~~~L  101 (325)
T 3kex_A           89 LQLVTQYLPLGSL  101 (325)
T ss_dssp             EEEEEECCTTCBS
T ss_pred             cEEEEEeCCCCCH
Confidence            8999999998755

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=98.08  E-value=1.9e-05  Score=66.87  Aligned_cols=79  Identities=18%  Similarity=0.149  Sum_probs=52.3

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeeccc-CCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGAL-PTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~-~~~~~~~   95 (299)
                      ..-++.++.|..+.||++... ++ .+++|......     ...+..|+..++.+..   -.+++++..... ..+..++
T Consensus         8 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            8 YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKH---PNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEEGGGTEEEE
T ss_pred             eeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCC---CCCCeEEEEEecCCCceEEE
Confidence            334577888888999999874 33 78888875321     2346678888877742   245556553211 1467899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +||+++|.++
T Consensus        85 v~e~~~~~~L   94 (279)
T 2w5a_A           85 VMEYCEGGDL   94 (279)
T ss_dssp             EEECCTTEEH
T ss_pred             EEeCCCCCCH
Confidence            9999998643

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=98.08  E-value=1e-05  Score=72.27  Aligned_cols=77  Identities=12%  Similarity=0.095  Sum_probs=52.7

Q ss_pred             eeeeeeeCCc--cccceEEEEeC-Cc-cEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           24 ITKICPVGGG--CINLASRYGTD-AG-SFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        24 ~~~~~~~~~G--~~n~~y~v~~~-~g-~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -.-++.+|.|  ..+.||++... ++ .+++|+....  .   ...+.+|+.+++.|..   -.+.+++..... .+..+
T Consensus        27 y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~-~~~~~  102 (389)
T 3gni_B           27 YELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNH---PNIVPYRATFIA-DNELW  102 (389)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEE
T ss_pred             EEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCC---CCCCcEeEEEEE-CCEEE
Confidence            3345778888  77889999875 33 7888987531  1   2446678888888753   235556654433 56889


Q ss_pred             EEEecccCCC
Q 022304           95 IIMEFIEFGS  104 (299)
Q Consensus        95 ~v~e~l~G~~  104 (299)
                      ++||+++|..
T Consensus       103 lv~e~~~~~~  112 (389)
T 3gni_B          103 VVTSFMAYGS  112 (389)
T ss_dssp             EEEECCTTCB
T ss_pred             EEEEccCCCC
Confidence            9999999874

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.08  E-value=1.8e-05  Score=76.13  Aligned_cols=77  Identities=13%  Similarity=0.021  Sum_probs=50.1

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -+..+|.|....||++.... + .|.+|+...      .....+..|..++..+..+  -.+++++..... .+..|++|
T Consensus       345 ~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~--~~i~~l~~~~~~-~~~~~lV~  421 (674)
T 3pfq_A          345 FLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKP--PFLTQLHSCFQT-MDRLYFVM  421 (674)
T ss_dssp             EEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCC--TTBCCEEEECBC-SSEEEEEE
T ss_pred             EEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCC--CeEEEEEEEEEe-CCEEEEEE
Confidence            35678999999999998643 3 688897642      1233455677666555432  234555554433 56789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus       422 E~~~gg~L  429 (674)
T 3pfq_A          422 EYVNGGDL  429 (674)
T ss_dssp             ECCCSCBH
T ss_pred             eCcCCCcH
Confidence            99999743

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=98.07  E-value=1e-05  Score=71.07  Aligned_cols=73  Identities=11%  Similarity=-0.043  Sum_probs=50.9

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.+|.|..+.||++...  +..+++|+...      .....+.+|+.+++.+..   -.+++++..... .+..+++|
T Consensus        13 i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~l~~~~~~-~~~~~lv~   88 (336)
T 3h4j_B           13 IRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRH---PHIIKLYDVITT-PTDIVMVI   88 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCC---CCCCeEEEEEEe-CCEEEEEE
Confidence            3577888888999999863  33788997642      223457788888877742   245666665443 56789999


Q ss_pred             ecccC
Q 022304           98 EFIEF  102 (299)
Q Consensus        98 e~l~G  102 (299)
                      ||+.|
T Consensus        89 E~~~g   93 (336)
T 3h4j_B           89 EYAGG   93 (336)
T ss_dssp             CCCCE
T ss_pred             ECCCC
Confidence            99955

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=98.07  E-value=2.7e-05  Score=66.28  Aligned_cols=76  Identities=14%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             ceeeeeeeCCccccceEEEEeC-C-ccEEEEecCCCC----------cchHHHHHHHHHHHHhcCCCCCccceeecccCC
Q 022304           23 HITKICPVGGGCINLASRYGTD-A-GSFFVKTNRSIG----------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT   90 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~-g~~vlK~~~~~~----------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~   90 (299)
                      ...-.+.++.|..+.||++... + ..+++|......          ...+.+|..+++.+. +  -.+++++....   
T Consensus        20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~i~~~~~~~~---   93 (287)
T 4f0f_A           20 EIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLN-H--PNIVKLYGLMH---   93 (287)
T ss_dssp             TEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCC-C--TTBCCEEEEET---
T ss_pred             cceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCC-C--CCchhhheeec---
Confidence            4445677899999999999873 3 378899875321          134667887777764 2  34566665543   


Q ss_pred             CceEEEEecccCCC
Q 022304           91 GGSYIIMEFIEFGS  104 (299)
Q Consensus        91 ~~~~~v~e~l~G~~  104 (299)
                      ...+++||+++|.+
T Consensus        94 ~~~~lv~e~~~~~~  107 (287)
T 4f0f_A           94 NPPRMVMEFVPCGD  107 (287)
T ss_dssp             TTTEEEEECCTTCB
T ss_pred             CCCeEEEEecCCCC
Confidence            34589999999863

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=98.07  E-value=1e-05  Score=70.29  Aligned_cols=47  Identities=15%  Similarity=0.122  Sum_probs=33.0

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHH
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMY   72 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~   72 (299)
                      -++.+|.|..+.||++... +| .|++|+....    ....+.+|+.+++.|.
T Consensus        10 ~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~   62 (332)
T 3qd2_B           10 PIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE   62 (332)
T ss_dssp             EEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCC
T ss_pred             eeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCC
Confidence            4567888988999999874 34 7899986531    1245678888887774

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=98.06  E-value=8.1e-06  Score=70.50  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             ceeeeeeeCCccccceEEEEe------CCc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGT------DAG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~------~~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-.+.+|.|..+.||++..      ..+ .+++|+.....    ...+..|...+..+..+  -.+++++.......+
T Consensus        28 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h--p~iv~~~~~~~~~~~  105 (316)
T 2xir_A           28 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH--LNVVNLLGACTKPGG  105 (316)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECCTTS
T ss_pred             heeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccC--CCeeeEEEEEecCCC
Confidence            344457788888899999973      222 68899876532    23466888888888544  345666665433234


Q ss_pred             ceEEEEecccCCC
Q 022304           92 GSYIIMEFIEFGS  104 (299)
Q Consensus        92 ~~~~v~e~l~G~~  104 (299)
                      ..+++||+++|.+
T Consensus       106 ~~~lv~e~~~~~~  118 (316)
T 2xir_A          106 PLMVIVEFCKFGN  118 (316)
T ss_dssp             CCEEEEECCTTEE
T ss_pred             ceEEEEEcCCCCc
Confidence            6899999999863

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=98.06  E-value=2.7e-05  Score=67.36  Aligned_cols=75  Identities=15%  Similarity=0.024  Sum_probs=45.5

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCc-----chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGP-----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~-----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.+|.|..+.||++... ++ .+.+|+......     .....|...+..+..+  -.+++++..... .+..+++|
T Consensus        60 ~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h--~~iv~l~~~~~~-~~~~~lv~  136 (311)
T 3p1a_A           60 QRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQH--PCCVRLEQAWEE-GGILYLQT  136 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEEEE-TTEEEEEE
T ss_pred             eeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCC--CcEEEEEEEEEe-CCEEEEEE
Confidence            34567899989999999875 34 788897654211     1122233333333222  345666655443 56889999


Q ss_pred             ecccC
Q 022304           98 EFIEF  102 (299)
Q Consensus        98 e~l~G  102 (299)
                      |++.|
T Consensus       137 e~~~~  141 (311)
T 3p1a_A          137 ELCGP  141 (311)
T ss_dssp             ECCCC
T ss_pred             eccCC
Confidence            99955

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=98.06  E-value=1.1e-05  Score=69.75  Aligned_cols=75  Identities=17%  Similarity=0.113  Sum_probs=50.7

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.++.|..+.||++... ++ .+++|+....   .   ...+..|+..++.|..   -.+++++..... .+..+++|
T Consensus        38 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---p~iv~~~~~~~~-~~~~~lv~  113 (309)
T 2h34_A           38 LRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQE---PHVVPIHDFGEI-DGQLYVDM  113 (309)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCC---TTBCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCC---CCeeEEEEEEee-CCeEEEEE
Confidence            3567888888899999864 33 7889987542   1   1345677777666632   245556655443 56889999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      |+++|.+
T Consensus       114 e~~~~~~  120 (309)
T 2h34_A          114 RLINGVD  120 (309)
T ss_dssp             ECCCCEE
T ss_pred             EecCCCC
Confidence            9999863

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.06  E-value=1.6e-05  Score=69.42  Aligned_cols=82  Identities=15%  Similarity=0.024  Sum_probs=48.1

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc--C--CCceEEEEe
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P--TGGSYIIME   98 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~--~~~~~~v~e   98 (299)
                      ...-.+.+|.|..+.||+....+..+++|+...........|.++... .......+.+++.....  .  ....+++||
T Consensus        14 ~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~-~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e   92 (336)
T 3g2f_A           14 NLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRV-PLMEHDNIARFIVGDERVTADGRMEYLLVME   92 (336)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTS-TTCCCTTBCCEEEEEEEECTTSCEEEEEEEC
T ss_pred             HhheeeecccCCCeEEEEEEECCeEEEEEEeeccchhhHHHHHHHHHH-HhccCcchhhheecccccccCCCceEEEEEe
Confidence            344567888888899999987766899998764333333444443321 11111234444432211  1  235689999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        93 ~~~~g~L   99 (336)
T 3g2f_A           93 YYPNGSL   99 (336)
T ss_dssp             CCTTCBH
T ss_pred             cCCCCcH
Confidence            9998643

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=98.06  E-value=1.3e-05  Score=69.65  Aligned_cols=75  Identities=15%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.+|.|..+.||++... +| .+++|+....         ....+..|+.+++.|..   -.+++++..... .+..++
T Consensus        17 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~l   92 (321)
T 2a2a_A           17 GEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLH---HNVITLHDVYEN-RTDVVL   92 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEE
T ss_pred             eeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCC---CCcceEEEEEec-CCEEEE
Confidence            467888888999999864 33 7888876531         12347789988888853   245666665443 567899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +||+++|.++
T Consensus        93 v~e~~~~~~L  102 (321)
T 2a2a_A           93 ILELVSGGEL  102 (321)
T ss_dssp             EECCCCSCBH
T ss_pred             EEEcCCCCcH
Confidence            9999988643

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=98.06  E-value=3.1e-05  Score=68.76  Aligned_cols=75  Identities=20%  Similarity=0.138  Sum_probs=51.0

Q ss_pred             eeeeeCCccccceEEEEeC------Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -++.+|.|..+.||++...      .+ .+.+|......    ...+..|+.+++.|. +  -.+++++..... .+..+
T Consensus        75 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h--pnIv~~~~~~~~-~~~~~  150 (367)
T 3l9p_A           75 LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFN-H--QNIVRCIGVSLQ-SLPRF  150 (367)
T ss_dssp             EEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCC-C--TTBCCEEEEECS-SSSCE
T ss_pred             EeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCC-C--CCCCeEEEEEec-CCCCE
Confidence            3577899999999998842      22 68899875421    233567888777774 2  345666665433 46779


Q ss_pred             EEEecccCCC
Q 022304           95 IIMEFIEFGS  104 (299)
Q Consensus        95 ~v~e~l~G~~  104 (299)
                      ++||+++|..
T Consensus       151 lv~e~~~~g~  160 (367)
T 3l9p_A          151 ILLELMAGGD  160 (367)
T ss_dssp             EEEECCTTEE
T ss_pred             EEEEeCCCCC
Confidence            9999999863

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=98.05  E-value=2.2e-05  Score=67.21  Aligned_cols=80  Identities=20%  Similarity=0.174  Sum_probs=52.5

Q ss_pred             ceeeeeeeCCccccceEEEEe-----CCc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCc
Q 022304           23 HITKICPVGGGCINLASRYGT-----DAG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~-----~~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~   92 (299)
                      ...-++.+|.|..+.||++..     ..+ .+++|......   ...+.+|+.+++.|..   -.+++++...... ...
T Consensus        11 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A           11 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQH---DNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEECHHHHTS
T ss_pred             HhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEecCCCCc
Confidence            444567889898899999973     233 78889876532   2346778888877742   2345555443211 245


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+++|..+
T Consensus        88 ~~lv~e~~~~~~L  100 (295)
T 3ugc_A           88 LKLIMEYLPYGSL  100 (295)
T ss_dssp             CEEEEECCTTCBH
T ss_pred             eEEEEEeCCCCCH
Confidence            7999999998743

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=98.05  E-value=6.5e-06  Score=69.30  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~   97 (299)
                      ..-.+.++.|..+.||++...+..+++|+.....     ...+..|+..++.+. +  -.+.+++...... .+..+++|
T Consensus        12 y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           12 LNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFS-H--PNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCS-C--TTEECEEEEECTTTSSSCEEEE
T ss_pred             hHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcC-C--CchhheEEEEccCCCCCeEeee
Confidence            3445778889889999999876689999886432     123445555444442 1  2344455443331 25779999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|.++
T Consensus        89 e~~~~~~L   96 (271)
T 3kmu_A           89 HWMPYGSL   96 (271)
T ss_dssp             ECCTTCBH
T ss_pred             cccCCCcH
Confidence            99998643

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=98.05  E-value=3.8e-05  Score=66.80  Aligned_cols=79  Identities=19%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             eeeeeeeCCccccceEEEEe-----CCc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCce
Q 022304           24 ITKICPVGGGCINLASRYGT-----DAG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGS   93 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~-----~~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~   93 (299)
                      ..-++.++.|..+.||++..     ..+ .+++|......   ...+.+|+.+++.|..   -.+++++...... ....
T Consensus        43 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           43 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQH---DNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             EEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCC---TTBCCEEEEECC----CC
T ss_pred             ceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCC---CCeeeEEEEEEecCCCce
Confidence            44467889998899999972     233 78889876532   2346788888877742   2345555543221 2367


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++||+++|.++
T Consensus       120 ~lv~e~~~~~~L  131 (326)
T 2w1i_A          120 KLIMEYLPYGSL  131 (326)
T ss_dssp             EEEECCCTTCBH
T ss_pred             EEEEECCCCCCH
Confidence            999999998643

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.04  E-value=1.6e-05  Score=74.41  Aligned_cols=74  Identities=23%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             eeeCCccccceEEEEeCCccEEEEecCCCC-----------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           28 CPVGGGCINLASRYGTDAGSFFVKTNRSIG-----------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-----------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      +.++.|..+.||+.+..+..+++|......           ...+.+|..+++.|... .+..|..+...   .+..+++
T Consensus       342 ~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~-nIv~~~~~~~~---~~~~~lV  417 (540)
T 3en9_A          342 HLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDF-GIPAPYIFDVD---LDNKRIM  417 (540)
T ss_dssp             ------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGG-TCCCCCEEEEE---TTTTEEE
T ss_pred             CEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCC-CcCceEEEEEe---CCccEEE
Confidence            467888889999997666678888654311           12367899999999653 46666777664   3567999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|.++
T Consensus       418 mE~~~ggsL  426 (540)
T 3en9_A          418 MSYINGKLA  426 (540)
T ss_dssp             EECCCSEEH
T ss_pred             EECCCCCCH
Confidence            999998643

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=98.04  E-value=2.3e-05  Score=68.91  Aligned_cols=75  Identities=16%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-------C
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-------T   90 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-------~   90 (299)
                      .-++.+|.|..+.||++... +| .+++|.....     ....+.+|+.+++.|..   -.+++++......       .
T Consensus        20 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           20 EKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH---ENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             EEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCC---TTBCCEEEEEEEC--------
T ss_pred             eEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccC---CCcccHhheeeccccccccCC
Confidence            34577899999999999873 33 7888976432     12345689988888853   2455566543221       2


Q ss_pred             CceEEEEecccC
Q 022304           91 GGSYIIMEFIEF  102 (299)
Q Consensus        91 ~~~~~v~e~l~G  102 (299)
                      +..+++||+++|
T Consensus        97 ~~~~lv~e~~~~  108 (351)
T 3mi9_A           97 GSIYLVFDFCEH  108 (351)
T ss_dssp             CEEEEEEECCSE
T ss_pred             ceEEEEEeccCC
Confidence            467999999987

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=98.04  E-value=1.4e-05  Score=69.71  Aligned_cols=76  Identities=14%  Similarity=0.113  Sum_probs=53.5

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -.+.+|.|..+.||++... .| .+.+|+....         ....+.+|+.+++.|..   -.+++++..... .+..+
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~-~~~~~   90 (326)
T 2y0a_A           15 TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQH---PNVITLHEVYEN-KTDVI   90 (326)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEE
T ss_pred             eceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCC---CCCCcEEEEEEe-CCEEE
Confidence            3567888988999999874 23 7888876421         12457789998888852   245666655443 56789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+++|..+
T Consensus        91 lv~e~~~~~~L  101 (326)
T 2y0a_A           91 LILELVAGGEL  101 (326)
T ss_dssp             EEEECCCSCBH
T ss_pred             EEEEcCCCCCH
Confidence            99999998643

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=98.04  E-value=1.7e-05  Score=67.86  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.++.|..+.||++... +| .+++|+....     ....+..|+..++.+..   -.+++++..... .+..+++|
T Consensus         6 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~   81 (299)
T 2r3i_A            6 QKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH---PNIVKLLDVIHT-ENKLYLVF   81 (299)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCC---TTBCCEEEEEEE-TTEEEEEE
T ss_pred             hhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCC---CCeeeEEEEEec-CCceEEEE
Confidence            34567888888999999874 33 7889987532     12456678877776632   245666665443 56789999


Q ss_pred             ecccC
Q 022304           98 EFIEF  102 (299)
Q Consensus        98 e~l~G  102 (299)
                      |+++|
T Consensus        82 e~~~~   86 (299)
T 2r3i_A           82 EFLHQ   86 (299)
T ss_dssp             ECCSE
T ss_pred             EcccC
Confidence            99986

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=98.04  E-value=1.2e-05  Score=68.04  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.++.|..+.||++...  +..+++|+....    ....+..|...++.+..   -.+++++..... .+..+++||+
T Consensus        11 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~   86 (276)
T 2yex_A           11 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNH---ENVVKFYGHRRE-GNIQYLFLEY   86 (276)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCC---TTBCCEEEEEEE-TTEEEEEEEC
T ss_pred             EEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCC---CCceeeeeEEEc-CCEEEEEEEe
Confidence            3467888888899999864  337889986431    12456778877776632   345666665443 5678999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        87 ~~~~~L   92 (276)
T 2yex_A           87 CSGGEL   92 (276)
T ss_dssp             CTTEEG
T ss_pred             cCCCcH
Confidence            998654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=98.04  E-value=9.4e-06  Score=71.18  Aligned_cols=77  Identities=17%  Similarity=0.064  Sum_probs=54.4

Q ss_pred             eeeeeCCccccceEEEEeCCccEEEEecCCC---Cc-----------------chHHHHHHHHHHHHhcCCCCCccceee
Q 022304           26 KICPVGGGCINLASRYGTDAGSFFVKTNRSI---GP-----------------SMFEGEALGLGAMYETRTIRAPRPFKV   85 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~---~~-----------------~~~~~E~~~l~~L~~~~~~~vP~~~~~   85 (299)
                      -.+.++.|..+.||++..++..+++|.....   ..                 ..+..|+.+++.|..   -.+++++..
T Consensus        35 ~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~  111 (348)
T 2pml_X           35 IIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKN---EYCLTCEGI  111 (348)
T ss_dssp             EEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCC---TTBCCCSEE
T ss_pred             EEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCC---CCcceEEEE
Confidence            3577888988999999985458999987531   10                 557788888877742   245556655


Q ss_pred             cccCCCceEEEEecccCCCCC
Q 022304           86 GALPTGGSYIIMEFIEFGSSR  106 (299)
Q Consensus        86 ~~~~~~~~~~v~e~l~G~~~~  106 (299)
                      ... .+..+++||+++|.++.
T Consensus       112 ~~~-~~~~~lv~e~~~~~~L~  131 (348)
T 2pml_X          112 ITN-YDEVYIIYEYMENDSIL  131 (348)
T ss_dssp             EES-SSEEEEEEECCTTCBSS
T ss_pred             Eee-CCeEEEEEeccCCCcHH
Confidence            433 56889999999997663

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.04  E-value=9e-06  Score=71.14  Aligned_cols=46  Identities=13%  Similarity=-0.015  Sum_probs=35.6

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCCC-----------cchHHHHHHHHHHHH
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSIG-----------PSMFEGEALGLGAMY   72 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-----------~~~~~~E~~~l~~L~   72 (299)
                      .+.+|.|..+.||++...+..+.+|+.....           ...+..|+.+++.|.
T Consensus        25 ~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   81 (336)
T 2vuw_A           25 CEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELS   81 (336)
T ss_dssp             CEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHH
T ss_pred             eeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHH
Confidence            5678889889999998865588999875321           145788999999987

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=98.03  E-value=2.4e-05  Score=67.87  Aligned_cols=78  Identities=21%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             eeeeeeCCccccceEEEEeCC--ccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA--GSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~   97 (299)
                      .-.+.+|.|..+.||++....  ..+++|+....    ....+.+|+.+++.|..   -.+++++...... ....+++|
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A           12 LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNH---KNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCC---TTBCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCC---CCcceEEEEeecCCCceEEEEE
Confidence            345678888889999998753  37889987531    23445688888888852   3456666544332 34679999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus        89 e~~~~~~L   96 (319)
T 4euu_A           89 EFCPCGSL   96 (319)
T ss_dssp             ECCTTCBH
T ss_pred             eCCCCCCH
Confidence            99998643

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=98.03  E-value=2.4e-05  Score=73.60  Aligned_cols=79  Identities=11%  Similarity=0.055  Sum_probs=54.1

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ...-+..+|.|..+.||++... .| .|.+|+...      .....+..|..+++.+..   -.+++++..... .+..+
T Consensus       185 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~h---p~Iv~l~~~~~~-~~~l~  260 (576)
T 2acx_A          185 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNS---RFVVSLAYAYET-KDALC  260 (576)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEE
T ss_pred             ceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCC---CCEeeEEEEEee-CCEEE
Confidence            3445678898988999999874 33 788897642      123446678888887742   235555554433 56889


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+++|..+
T Consensus       261 lVmEy~~gg~L  271 (576)
T 2acx_A          261 LVLTLMNGGDL  271 (576)
T ss_dssp             EEECCCCSCBH
T ss_pred             EEEEcCCCCcH
Confidence            99999999743

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=98.03  E-value=9.9e-06  Score=68.69  Aligned_cols=76  Identities=12%  Similarity=0.013  Sum_probs=51.3

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-.+.++.|..+.||++... ++ .+++|+....      ....+..|..+++.+..   -.+++++..... .+..+++
T Consensus        14 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv   89 (278)
T 3cok_A           14 KVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH---PSILELYNYFED-SNYVYLV   89 (278)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCC---TTBCCEEEEEEC-SSEEEEE
T ss_pred             eeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCC---CCeEeEEEEEcc-CCeEEEE
Confidence            33567888888999999863 34 7889987531      12446678877766642   245666655433 4678999


Q ss_pred             EecccCCC
Q 022304           97 MEFIEFGS  104 (299)
Q Consensus        97 ~e~l~G~~  104 (299)
                      ||+++|..
T Consensus        90 ~e~~~~~~   97 (278)
T 3cok_A           90 LEMCHNGE   97 (278)
T ss_dssp             EECCTTEE
T ss_pred             EecCCCCc
Confidence            99998863

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=98.03  E-value=1e-05  Score=70.43  Aligned_cols=78  Identities=15%  Similarity=-0.051  Sum_probs=48.5

Q ss_pred             eeeeeeCCccccceEEEEeCCccEEEEecCCCCc--chHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEEEEec
Q 022304           25 TKICPVGGGCINLASRYGTDAGSFFVKTNRSIGP--SMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYIIMEF   99 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~--~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~v~e~   99 (299)
                      .-.+.+|.|..+.||+.+..+..+++|+......  ...+.|+..++.|..   -.+.+++......   ....+++||+
T Consensus        27 ~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~~~~~~~~~~lv~e~  103 (322)
T 3soc_A           27 QLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKH---ENILQFIGAEKRGTSVDVDLWLITAF  103 (322)
T ss_dssp             EEEEEEECSTTCEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCC---TTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred             hhhheecccCceEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCC---CCchhhcceeccCCCCCceEEEEEec
Confidence            3457788898999999988766899998864322  223334444444421   2345555443321   2246999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|.++
T Consensus       104 ~~~g~L  109 (322)
T 3soc_A          104 HEKGSL  109 (322)
T ss_dssp             CTTCBH
T ss_pred             CCCCCH
Confidence            998743

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=98.03  E-value=2.5e-05  Score=66.24  Aligned_cols=78  Identities=18%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc-------------
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL-------------   88 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~-------------   88 (299)
                      ..-++.++.|..+.||++... ++ .+++|..... ...+.+|+..++.|..   -.+.+++.....             
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~e~~~l~~l~h---~~i~~~~~~~~~~~~~~~~~~~~~~   88 (284)
T 2a19_B           13 FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN-NEKAEREVKALAKLDH---VNIVHYNGCWDGFDYDPETSSKNSS   88 (284)
T ss_dssp             EEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC-SGGGHHHHHHHHHCCC---TTBCCEEEEEEEEEEC---------
T ss_pred             cceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc-cHHHHHHHHHHHhCCC---CCEEEEeeeEeccccCccccccccc
Confidence            345677888888999999875 33 7899987653 2457889998888853   233444432110             


Q ss_pred             -C-CCceEEEEecccCCCC
Q 022304           89 -P-TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        89 -~-~~~~~~v~e~l~G~~~  105 (299)
                       . ....+++||+++|.++
T Consensus        89 ~~~~~~~~lv~e~~~~~~L  107 (284)
T 2a19_B           89 RSKTKCLFIQMEFCDKGTL  107 (284)
T ss_dssp             CCEEEEEEEEECCCCSCBH
T ss_pred             ccCcceEEEEEeccCCCCH
Confidence             0 2346899999998643

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.03  E-value=2.8e-05  Score=70.66  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=52.0

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCcc---ceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPR---PFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~---~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.+|.|..+.||++.... + .+.+|+.....  ...+..|..+++.|........|.   ++..... .+..+++||+
T Consensus       102 ~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~-~~~~~lv~e~  180 (429)
T 3kvw_A          102 LKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF-RNHICMTFEL  180 (429)
T ss_dssp             EEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE-TTEEEEEECC
T ss_pred             EEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc-CCeEEEEEec
Confidence            5778889889999997643 3 78899886532  244677999999997643333444   4433322 4678999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus       181 ~~~  183 (429)
T 3kvw_A          181 LSM  183 (429)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            976

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=98.02  E-value=1.5e-05  Score=68.17  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             eeCCccccceEEEEe--CC-c-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           29 PVGGGCINLASRYGT--DA-G-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~--~~-g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+|.|..+.||++..  .. + .+++|+.....     ...+..|+.+++.|. +  -.+++++....  .+..+++||+
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~-h--~~i~~~~~~~~--~~~~~lv~e~   98 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLD-N--PYIVRMIGICE--AESWMLVMEM   98 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCC-C--TTBCCEEEEEE--SSSEEEEEEC
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCC-C--CCEEEEEEEEC--CCCcEEEEEe
Confidence            688888899999843  22 2 78899876421     244667888887774 2  34566666543  4678999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|.+
T Consensus        99 ~~~~~  103 (291)
T 1xbb_A           99 AELGP  103 (291)
T ss_dssp             CTTEE
T ss_pred             CCCCC
Confidence            99863

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.02  E-value=2.8e-05  Score=67.56  Aligned_cols=78  Identities=14%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             eeeeeeeCCccccceEEEEe--CCc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCC---CccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGT--DAG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIR---APRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~--~~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~---vP~~~~~~~~~~~~~~~   95 (299)
                      -.-++.+|.|..+.||++..  .++ .+++|+.....  ...+..|..+++.|.......   +++++..... .+..++
T Consensus        16 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~-~~~~~l   94 (339)
T 1z57_A           16 YEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH-HGHICI   94 (339)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE-TTEEEE
T ss_pred             eEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc-CCcEEE
Confidence            33467788888899999875  234 78889876432  245778999999997643333   4455544333 568899


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +||++.|
T Consensus        95 v~e~~~~  101 (339)
T 1z57_A           95 VFELLGL  101 (339)
T ss_dssp             EEECCCC
T ss_pred             EEcCCCC
Confidence            9999943

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.02  E-value=1.4e-05  Score=68.38  Aligned_cols=76  Identities=17%  Similarity=0.079  Sum_probs=50.9

Q ss_pred             ceeeeeeeCCccccceEEEEeCCccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           23 HITKICPVGGGCINLASRYGTDAGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ...-.+.+|.|..+.||+.... +.+.+|+.....     ...+..|+.+++.+..   ..+.+++.+..  .+..+++|
T Consensus        25 ~y~~~~~lG~G~~g~Vy~~~~~-~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~--~~~~~lv~   98 (289)
T 3og7_A           25 QITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRH---VNILLFMGYST--APQLAIVT   98 (289)
T ss_dssp             SCEEEEEEEECSSEEEEEEESS-SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCC---TTBCCEEEEEC--SSSCEEEE
T ss_pred             ceeeeeEecCCCCeEEEEEEEc-CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCC---CcEEEEEeecc--CCccEEEE
Confidence            4445678898988999998754 468888775321     2345677777766642   23445555432  45789999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      ++++|..
T Consensus        99 e~~~~~~  105 (289)
T 3og7_A           99 QWCEGSS  105 (289)
T ss_dssp             ECCCEEE
T ss_pred             EecCCCc
Confidence            9999863

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=98.01  E-value=1.4e-05  Score=71.27  Aligned_cols=76  Identities=24%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             eeeeeCCccccceEEEEeC----Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           26 KICPVGGGCINLASRYGTD----AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      -.+.+|.|..+.||+....    .+ .+++|......    ...+..|+.++..|..   -.+++++..... .+..+++
T Consensus        49 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~-~~~~~lv  124 (373)
T 2qol_A           49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDH---PNIIRLEGVVTK-SKPVMIV  124 (373)
T ss_dssp             CCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCC---TTBCCEEEEECS-SSSCEEE
T ss_pred             eeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCC---CCCCeEEEEEee-CCceEEE
Confidence            3567888888999998753    23 68999876421    2345678877766632   245666665443 4678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus       125 ~e~~~~~sL  133 (373)
T 2qol_A          125 TEYMENGSL  133 (373)
T ss_dssp             EECCTTCBH
T ss_pred             EeCCCCCcH
Confidence            999998743

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=98.01  E-value=3.7e-05  Score=65.44  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             ceeeeeeeCCccccceEEEEeCC---------ccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCC
Q 022304           23 HITKICPVGGGCINLASRYGTDA---------GSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPT   90 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~---------g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~   90 (299)
                      ...-.+.++.|..+.||++....         ..+++|+....   ....+..|+.+++.+..   -.+++++..... .
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~   84 (289)
T 4fvq_A            9 DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSH---KHLVLNYGVCVC-G   84 (289)
T ss_dssp             GEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCC---TTBCCEEEEECC-T
T ss_pred             HeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCC---CCEeEEEEEEEe-C
Confidence            44456778888889999987532         24888987542   22446678877777742   345666665443 4


Q ss_pred             CceEEEEecccCCCC
Q 022304           91 GGSYIIMEFIEFGSS  105 (299)
Q Consensus        91 ~~~~~v~e~l~G~~~  105 (299)
                      +..+++||+++|..+
T Consensus        85 ~~~~lv~e~~~~~~L   99 (289)
T 4fvq_A           85 DENILVQEFVKFGSL   99 (289)
T ss_dssp             TCCEEEEECCTTCBH
T ss_pred             CCCEEEEECCCCCCH
Confidence            678999999998643

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=98.01  E-value=1e-05  Score=71.33  Aligned_cols=74  Identities=11%  Similarity=0.104  Sum_probs=48.4

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.+|.|..+.||++...+ + .+++|+.... ....+..|+.++..|..   -.+++++..... .+..+++||+++|.
T Consensus        58 ~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~-~~~~~lv~e~~~~~  133 (349)
T 2w4o_A           58 ESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSH---PNIIKLKEIFET-PTEISLVLELVTGG  133 (349)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCC---TTBCCEEEEEEC-SSEEEEEECCCCSC
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCC---CCCcceeeeEec-CCeEEEEEEeCCCC
Confidence            4678888889999998753 3 6889987642 34557789988888853   245666665443 46789999999986


Q ss_pred             C
Q 022304          104 S  104 (299)
Q Consensus       104 ~  104 (299)
                      .
T Consensus       134 ~  134 (349)
T 2w4o_A          134 E  134 (349)
T ss_dssp             B
T ss_pred             C
Confidence            4

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=98.01  E-value=1.7e-05  Score=69.74  Aligned_cols=73  Identities=11%  Similarity=-0.008  Sum_probs=49.8

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCC--------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSI--------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~--------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      -++.+|.|..+.||++.... | .+++|.....        ....+..|+.+++.|..   -.+++++..... .+..++
T Consensus        14 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~l   89 (346)
T 1ua2_A           14 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH---PNIIGLLDAFGH-KSNISL   89 (346)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCC---TTBCCEEEEECC-TTCCEE
T ss_pred             EEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCC---CCCCeEEEEEee-CCceEE
Confidence            45678888889999998642 3 7889987531        12346688888888752   245666655433 567899


Q ss_pred             EEecccC
Q 022304           96 IMEFIEF  102 (299)
Q Consensus        96 v~e~l~G  102 (299)
                      +||+++|
T Consensus        90 v~e~~~~   96 (346)
T 1ua2_A           90 VFDFMET   96 (346)
T ss_dssp             EEECCSE
T ss_pred             EEEcCCC
Confidence            9999987

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.01  E-value=2.1e-05  Score=68.58  Aligned_cols=75  Identities=15%  Similarity=0.056  Sum_probs=53.3

Q ss_pred             eeeCCccccceEEEEeC--CccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           28 CPVGGGCINLASRYGTD--AGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +.+|.|..+.||++...  +..|++|+....     ....+..|...+..+..+  -.+++++..... .+..+++||++
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~--~~iv~~~~~~~~-~~~~~lv~e~~  111 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSC--PRVINLHEVYEN-TSEIILILEYA  111 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTC--TTBCCEEEEEEC-SSEEEEEEECC
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCC--CCEEEEEEEEEe-CCeEEEEEEec
Confidence            56888888999999874  337888976531     134567788888877653  346666665443 56789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       112 ~~~~L  116 (327)
T 3lm5_A          112 AGGEI  116 (327)
T ss_dssp             TTEEG
T ss_pred             CCCcH
Confidence            99754

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=98.00  E-value=2.8e-05  Score=66.86  Aligned_cols=76  Identities=17%  Similarity=0.133  Sum_probs=52.4

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      -.+.+|.|..+.||++... +| .+++|+....   ....+..|+..++.|..   -.+++++..... .+..+++||++
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~e~~   88 (304)
T 2jam_A           13 FMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKH---ENIVTLEDIYES-TTHYYLVMQLV   88 (304)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEEEECCC
T ss_pred             eeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCC---CCeeehhhhccc-CCEEEEEEEcC
Confidence            4567888888999999874 33 7889987542   23457789988888842   245556655433 56789999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus        89 ~~~~L   93 (304)
T 2jam_A           89 SGGEL   93 (304)
T ss_dssp             CSCBH
T ss_pred             CCccH
Confidence            88643

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=98.00  E-value=2.3e-05  Score=71.62  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=51.0

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.+|.|..+.||++... .| .|.+|+.....     ...+.+|+.+++.|..   -.+++++..... .+..+++||+
T Consensus        16 ~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~h---pnIv~l~~~~~~-~~~~~lv~E~   91 (444)
T 3soa_A           16 FEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH---PNIVRLHDSISE-EGHHYLIFDL   91 (444)
T ss_dssp             EEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCB---TTBCCEEEEEEC-SSEEEEEECC
T ss_pred             EEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCC---cCCCeEEEEEEE-CCEEEEEEEe
Confidence            467888888999998753 34 78888765321     2446789998888842   245666655443 5788999999


Q ss_pred             ccCCCC
Q 022304          100 IEFGSS  105 (299)
Q Consensus       100 l~G~~~  105 (299)
                      ++|..+
T Consensus        92 ~~gg~L   97 (444)
T 3soa_A           92 VTGGEL   97 (444)
T ss_dssp             CBCCBH
T ss_pred             CCCCCH
Confidence            999743

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=98.00  E-value=3.4e-05  Score=72.22  Aligned_cols=78  Identities=12%  Similarity=-0.032  Sum_probs=52.7

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      ..-+..+|.|..+.||++... .| .|.+|+...      .....+..|..+++.+..   -.+++++..... .+..++
T Consensus       187 f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~h---p~Iv~l~~~~~~-~~~l~l  262 (543)
T 3c4z_A          187 FLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHS---RFIVSLAYAFET-KTDLCL  262 (543)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEE
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCC---CCEeeEEEEEee-CCEEEE
Confidence            344567888988999999874 34 788898742      122345678888877742   234555554333 467899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|..+
T Consensus       263 VmE~~~gg~L  272 (543)
T 3c4z_A          263 VMTIMNGGDI  272 (543)
T ss_dssp             EECCCTTCBH
T ss_pred             EEEeccCCCH
Confidence            9999999743

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=98.00  E-value=3.6e-05  Score=67.69  Aligned_cols=75  Identities=16%  Similarity=-0.001  Sum_probs=53.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      -.+.+|.|..+.||++... .+ .|.+|+..... .....|.+.+..+..+  -.+++++..... .+..+++||+++|.
T Consensus        26 ~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~E~~~l~~~~~h--p~iv~~~~~~~~-~~~~~lv~E~~~gg  101 (342)
T 2qr7_A           26 VKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK-RDPTEEIEILLRYGQH--PNIITLKDVYDD-GKYVYVVTELMKGG  101 (342)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT-CCCHHHHHHHHHHTTS--TTBCCEEEEEEC-SSEEEEEECCCCSC
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc-CChHHHHHHHHHhcCC--CCcCeEEEEEEc-CCEEEEEEeCCCCC
Confidence            3567888888999999864 33 78999886532 2346788888777554  245666655443 56789999999986


Q ss_pred             C
Q 022304          104 S  104 (299)
Q Consensus       104 ~  104 (299)
                      .
T Consensus       102 ~  102 (342)
T 2qr7_A          102 E  102 (342)
T ss_dssp             B
T ss_pred             c
Confidence            3

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=97.99  E-value=2.8e-05  Score=66.41  Aligned_cols=75  Identities=13%  Similarity=0.123  Sum_probs=48.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc----cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG----SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g----~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.+|.|..+.||++... ++    .+.+|......    ...+..|..+++.|..   -.+.+++.......+..+++|
T Consensus        26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNH---PNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCC---TTBCCCCEEECCSSSCCEEEE
T ss_pred             CceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCC---CCeeeEEEEEecCCCCcEEEE
Confidence            367888988999998742 22    58888876422    2345677777777642   235555555433234569999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      +++.|..
T Consensus       103 e~~~~~~  109 (298)
T 3pls_A          103 PYMCHGD  109 (298)
T ss_dssp             CCCTTCB
T ss_pred             ecccCCC
Confidence            9998863

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=97.99  E-value=5e-06  Score=72.44  Aligned_cols=77  Identities=16%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-c--EEEEecCC----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-S--FFVKTNRS----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~--~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.++.|..+.||++... ++ .  +++|....    .....+..|..+++.|..+  -.+++++..... .+..+++|
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h--p~iv~~~~~~~~-~~~~~lv~  105 (327)
T 1fvr_A           29 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH--PNIINLLGACEH-RGYLYLAI  105 (327)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCC--TTBCCEEEEEEE-TTEEEEEE
T ss_pred             ceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCC--Cchhhhceeeee-CCceEEEE
Confidence            3567888888999998753 33 3  36776543    1235577888888777433  245666665443 56889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|.++
T Consensus       106 e~~~~~~L  113 (327)
T 1fvr_A          106 EYAPHGNL  113 (327)
T ss_dssp             CCCTTCBH
T ss_pred             ecCCCCCH
Confidence            99998744

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=97.99  E-value=1.6e-05  Score=68.17  Aligned_cols=144  Identities=13%  Similarity=0.100  Sum_probs=73.7

Q ss_pred             eeeeeeeCCccccceEEEEeC--CccEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTD--AGSFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ..-.+.++.|..+.||++...  +..+++|.....    ....+..|+..++.+. +  -.+++++..... .+..+++|
T Consensus        17 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~-h--~~i~~~~~~~~~-~~~~~lv~   92 (303)
T 2vwi_A           17 YELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCH-H--PNIVSYYTSFVV-KDELWLVM   92 (303)
T ss_dssp             CEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCC-C--TTBCCEEEEEES-SSCEEEEE
T ss_pred             hhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcC-C--CCEeeEEEEEee-cCCcEEEe
Confidence            344577888888999999753  347899987532    1233445555444442 1  234555544333 46789999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      |+++|..+       ...+..+.......  .        +.        -++..      +                ..
T Consensus        93 e~~~~~~L-------~~~l~~~~~~~~~~--~--------~~--------~~~~~------~----------------~~  125 (303)
T 2vwi_A           93 KLLSGGSV-------LDIIKHIVAKGEHK--S--------GV--------LDEST------I----------------AT  125 (303)
T ss_dssp             ECCTTCBH-------HHHHHHHHHTTTTT--T--------CS--------SCHHH------H----------------HH
T ss_pred             hhccCCch-------HHHHHHHhhccccc--c--------CC--------CCHHH------H----------------HH
Confidence            99998743       23333333322110  0        00        01110      0                01


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+.+++..+..+..     ..++|||++|.||+++.++.+.|+|+.
T Consensus       126 i~~qi~~~l~~lH~-----~~i~H~dl~p~Nil~~~~~~~kl~dfg  166 (303)
T 2vwi_A          126 ILREVLEGLEYLHK-----NGQIHRDVKAGNILLGEDGSVQIADFG  166 (303)
T ss_dssp             HHHHHHHHHHHHHH-----TTCCCCCCSGGGEEECTTCCEEECCCH
T ss_pred             HHHHHHHHHHHHHh-----CCCCCCCCChhhEEEcCCCCEEEEecc
Confidence            12223333332222     368999999999999988888999974

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=97.99  E-value=1.2e-05  Score=71.37  Aligned_cols=76  Identities=14%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      -.+.+|.|..+.||++... .| .|.+|+....         ....+..|+.+++.|. +  -.+++++..... .+..+
T Consensus        16 ~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~-h--pnIv~l~~~~~~-~~~~~   91 (361)
T 2yab_A           16 IGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVL-H--PNIITLHDVYEN-RTDVV   91 (361)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCC-C--TTBCCEEEEEEC-SSEEE
T ss_pred             EeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCC-C--cCCCcEEEEEEe-CCEEE
Confidence            3567888988999999874 33 7888876531         1234678888887774 2  245566655433 56789


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+++|..+
T Consensus        92 lv~e~~~gg~L  102 (361)
T 2yab_A           92 LILELVSGGEL  102 (361)
T ss_dssp             EEEECCCSCBH
T ss_pred             EEEEcCCCCcH
Confidence            99999998643

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=97.99  E-value=2.2e-05  Score=68.07  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=48.1

Q ss_pred             ceeeeeeeCCccccceEEEEeCCc-----cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC--C
Q 022304           23 HITKICPVGGGCINLASRYGTDAG-----SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP--T   90 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~g-----~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~--~   90 (299)
                      ...-.+.+|.|..+.||++.....     .+++|+....     ....+.+|+.+++.|. +  -.+++++......  .
T Consensus        24 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           24 QFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFD-H--PHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             -CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCC-C--TTBCCCCEEEECC---
T ss_pred             HeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCC-C--Cceehhhceeeccccc
Confidence            344567889898999999975322     5788987642     1234667887777663 2  2455566543321  1


Q ss_pred             ---CceEEEEecccCCCC
Q 022304           91 ---GGSYIIMEFIEFGSS  105 (299)
Q Consensus        91 ---~~~~~v~e~l~G~~~  105 (299)
                         ...+++|++++|..+
T Consensus       101 ~~~~~~~~v~e~~~~~~L  118 (323)
T 3qup_A          101 GRLPIPMVILPFMKHGDL  118 (323)
T ss_dssp             ----CEEEEEECCTTCBH
T ss_pred             cCCCccEEEEEeccCCcH
Confidence               134899999999743

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=97.99  E-value=2.6e-05  Score=66.25  Aligned_cols=77  Identities=19%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             ceeeeeeeCCccccceEEEEeCC----c-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           23 HITKICPVGGGCINLASRYGTDA----G-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~----g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      ...-.+.+|.|..+.||++....    + .+.+|......    ...+..|...++.+..   -.+++++....  .+..
T Consensus        16 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~--~~~~   90 (281)
T 1mp8_A           16 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH---PHIVKLIGVIT--ENPV   90 (281)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCC---TTBCCEEEEEC--SSSC
T ss_pred             HeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CccceEEEEEc--cCcc
Confidence            33445778888889999987632    1 47888876422    2345677777766632   24566665532  4678


Q ss_pred             EEEEecccCCC
Q 022304           94 YIIMEFIEFGS  104 (299)
Q Consensus        94 ~~v~e~l~G~~  104 (299)
                      +++||+++|..
T Consensus        91 ~lv~e~~~~~~  101 (281)
T 1mp8_A           91 WIIMELCTLGE  101 (281)
T ss_dssp             EEEEECCTTEE
T ss_pred             EEEEecCCCCC
Confidence            99999998863

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=97.99  E-value=1.9e-05  Score=70.31  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=24.5

Q ss_pred             cceeccCCCCCCeeecCCCCeEEEccc
Q 022304          197 PCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       197 ~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ..++|+|++|+|||++.++.+.|+||.
T Consensus       225 ~~ivHrDikp~NIll~~~~~~kL~DFG  251 (377)
T 3byv_A          225 YGLVHTYLRPVDIVLDQRGGVFLTGFE  251 (377)
T ss_dssp             TTEECSCCCGGGEEECTTCCEEECCGG
T ss_pred             CCeecCCCCHHHEEEcCCCCEEEEech
Confidence            369999999999999988888999985

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=97.98  E-value=3.2e-05  Score=65.61  Aligned_cols=77  Identities=16%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      -.-.+.++.|..+.||++... ++ .+++|+....  .   ...+..|+.+++.|..   -.+++++..... .+..+++
T Consensus         8 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~~v   83 (284)
T 3kk8_A            8 YDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH---PNIVRLHDSIQE-ESFHYLV   83 (284)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEEE
T ss_pred             hhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCC---CCcCeEEEEEEc-CCEEEEE
Confidence            344577888888999998764 33 7888987532  1   2346678888888842   345666665443 4678999


Q ss_pred             EecccCCC
Q 022304           97 MEFIEFGS  104 (299)
Q Consensus        97 ~e~l~G~~  104 (299)
                      ||+++|..
T Consensus        84 ~e~~~~~~   91 (284)
T 3kk8_A           84 FDLVTGGE   91 (284)
T ss_dssp             ECCCCSCB
T ss_pred             EecCCCCC
Confidence            99999863

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=97.98  E-value=2.5e-05  Score=69.69  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=42.7

Q ss_pred             eeeeeeCCccccceEEEEeCC-c-cEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++.... + .|.+|+.....      ...+..|...+  +.....-.+++++..... .+..|++
T Consensus        41 ~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~l--l~~~~hp~Iv~l~~~~~~-~~~~~lv  117 (373)
T 2r5t_A           41 HFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVL--LKNVKHPFLVGLHFSFQT-ADKLYFV  117 (373)
T ss_dssp             EEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CC--BCCCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHH--HHhCCCCCCCCEEEEEEe-CCEEEEE
Confidence            345778999889999998743 3 68889875321      11122222221  111101124444444333 5688999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      |||++|..+
T Consensus       118 ~E~~~gg~L  126 (373)
T 2r5t_A          118 LDYINGGEL  126 (373)
T ss_dssp             EECCCSCBH
T ss_pred             EeCCCCCcH
Confidence            999999743

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=97.98  E-value=3.5e-05  Score=66.80  Aligned_cols=78  Identities=22%  Similarity=0.221  Sum_probs=52.3

Q ss_pred             eeeeeeCCccccceEEEEe-----CCc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCce
Q 022304           25 TKICPVGGGCINLASRYGT-----DAG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGS   93 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~-----~~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~   93 (299)
                      .-++.+|.|..+.||++..     ..+ .+++|+.....    ...+.+|+.+++.|..   -.+++++...... ....
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~  110 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYH---EHIIKYKGCCEDAGAASL  110 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEEETTTTEE
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCC---cchhhEEEEEecCCCceE
Confidence            4467889898899988642     123 68999886532    2446789988888852   3455666554332 3467


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++||+++|..+
T Consensus       111 ~lv~e~~~~~~L  122 (318)
T 3lxp_A          111 QLVMEYVPLGSL  122 (318)
T ss_dssp             EEEECCCTTCBH
T ss_pred             EEEEecccCCcH
Confidence            899999988643

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=97.98  E-value=7e-05  Score=63.38  Aligned_cols=78  Identities=14%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.++.|..+.||++...  +..+++|......     ...+..|...+..+..+  -.+++++..... .+..+++|
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h--~~iv~~~~~~~~-~~~~~lv~   90 (289)
T 1x8b_A           14 HELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQH--SHVVRYFSAWAE-DDHMLIQN   90 (289)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSC--TTBCCEEEEEEE-TTEEEEEE
T ss_pred             hhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCC--CCeeeeeeeeec-CCeEEEEE
Confidence            34577888888999999874  3478899875421     12344566555555333  235556655433 56889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|.++
T Consensus        91 e~~~~~~L   98 (289)
T 1x8b_A           91 EYCNGGSL   98 (289)
T ss_dssp             ECCTTCBH
T ss_pred             EecCCCcH
Confidence            99998643

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=97.98  E-value=5.8e-05  Score=67.38  Aligned_cols=75  Identities=13%  Similarity=0.113  Sum_probs=43.3

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~   97 (299)
                      -++.+|.|..+.||++... .| .+++|.....  .   ...+.+|..++..+..+  -.+++++...... ....|++|
T Consensus        13 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h--~niv~l~~~~~~~~~~~~~lv~   90 (388)
T 3oz6_A           13 LVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGH--ENIVNLLNVLRADNDRDVYLVF   90 (388)
T ss_dssp             EEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTC--TTBCCEEEEEECTTSSCEEEEE
T ss_pred             EEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCC--CCCCeeeeEEecCCCCEEEEEe
Confidence            3567888988999998753 33 7888876432  1   23345788888877644  2456666553321 24679999


Q ss_pred             ecccC
Q 022304           98 EFIEF  102 (299)
Q Consensus        98 e~l~G  102 (299)
                      |+++|
T Consensus        91 e~~~~   95 (388)
T 3oz6_A           91 DYMET   95 (388)
T ss_dssp             ECCSE
T ss_pred             cccCc
Confidence            99986

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=97.97  E-value=3.3e-05  Score=71.58  Aligned_cols=76  Identities=17%  Similarity=0.062  Sum_probs=51.0

Q ss_pred             eeeeeeCCccccceEEEEeCC-c-cEEEEecCCC----------------CcchHHHHHHHHHHHHhcCCCCCccceeec
Q 022304           25 TKICPVGGGCINLASRYGTDA-G-SFFVKTNRSI----------------GPSMFEGEALGLGAMYETRTIRAPRPFKVG   86 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~----------------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~   86 (299)
                      .-++.+|.|..+.||++.... + .+.+|+....                ....+..|+.+++.|. +  -.+++++...
T Consensus        39 ~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--pniv~~~~~~  115 (504)
T 3q5i_A           39 FKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLD-H--PNIIKLFDVF  115 (504)
T ss_dssp             EEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCC-C--TTBCCEEEEE
T ss_pred             EEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCC-C--CCCCeEEEEE
Confidence            346789999999999998743 3 6888876431                1234667888887774 2  2456666654


Q ss_pred             ccCCCceEEEEecccCCC
Q 022304           87 ALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        87 ~~~~~~~~~v~e~l~G~~  104 (299)
                      .. .+..+++||+++|..
T Consensus       116 ~~-~~~~~lv~e~~~gg~  132 (504)
T 3q5i_A          116 ED-KKYFYLVTEFYEGGE  132 (504)
T ss_dssp             EC-SSEEEEEEECCTTCB
T ss_pred             Ec-CCEEEEEEecCCCCc
Confidence            43 567899999999863

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=97.97  E-value=4.6e-05  Score=67.91  Aligned_cols=75  Identities=11%  Similarity=0.005  Sum_probs=51.1

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCC---CccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIR---APRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~---vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+.+|.|..+.||++... ++ .+.+|+.....  ......|..+++.+..+....   +++++..... .+..+++||+
T Consensus        59 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~-~~~~~lv~e~  137 (382)
T 2vx3_A           59 DSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF-RNHLCLVFEM  137 (382)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE-TTEEEEEEEC
T ss_pred             EEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc-CCceEEEEec
Confidence            567888888999999764 33 68899876431  244567888888887642221   4444443332 4688999999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus       138 ~~~  140 (382)
T 2vx3_A          138 LSY  140 (382)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            976

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=97.96  E-value=5.9e-05  Score=65.58  Aligned_cols=78  Identities=23%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             ceeeeeeeCCccccceEEEEeC------Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-++.+|.|..+.||++...      .+ .+++|......    ...+..|+.+++.|. +  -.+++++..... .+
T Consensus        31 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~iv~~~~~~~~-~~  106 (327)
T 2yfx_A           31 NITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFN-H--QNIVRCIGVSLQ-SL  106 (327)
T ss_dssp             GCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCC-C--TTBCCEEEEECS-SS
T ss_pred             heEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCC-C--CCCCeEEEEEcC-CC
Confidence            4445678898988999998731      22 68999876421    234567887777773 2  345666665443 46


Q ss_pred             ceEEEEecccCCC
Q 022304           92 GSYIIMEFIEFGS  104 (299)
Q Consensus        92 ~~~~v~e~l~G~~  104 (299)
                      ..+++||+++|.+
T Consensus       107 ~~~lv~e~~~~~~  119 (327)
T 2yfx_A          107 PRFILMELMAGGD  119 (327)
T ss_dssp             SCEEEEECCTTEE
T ss_pred             CcEEEEecCCCCc
Confidence            7799999998863

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=97.95  E-value=5.2e-05  Score=67.90  Aligned_cols=71  Identities=13%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.+|.|..+.||++....+ .+.+|+.....     ...+..|+.+++.|..+ .-.+.+++.+... .+..+++||+
T Consensus        61 ~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~-~~~iv~~~~~~~~-~~~~~lv~E~  137 (390)
T 2zmd_A           61 LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH-SDKIIRLYDYEIT-DQYIYMVMEC  137 (390)
T ss_dssp             EEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTT-CTTBCCEEEEEEC-SSEEEEEEEC
T ss_pred             EEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccC-CCeEEEEEEEEec-CCEEEEEEec
Confidence            46789898899999987555 68889765321     24567899999999753 1346667765443 4678999994

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=97.95  E-value=3.8e-05  Score=66.34  Aligned_cols=78  Identities=18%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCc------chHHHHHHHHHHHHhcCCCCCccceeecccC--C-Cce
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGP------SMFEGEALGLGAMYETRTIRAPRPFKVGALP--T-GGS   93 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~------~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~--~-~~~   93 (299)
                      .-.+.+|.|..+.||++... ++ .+++|+......      ..+.+|+..++.|. +  -.+++++......  . ...
T Consensus        15 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--p~iv~~~~~~~~~~~~~~~~   91 (311)
T 3ork_A           15 ELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN-H--PAIVAVYDTGEAETPAGPLP   91 (311)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCC-C--TTBCCEEEEEEEEETTEEEE
T ss_pred             EEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCC-C--CCcceEEEeeeccCCCCccc
Confidence            34577888888999999853 33 789998864311      12344554443332 1  2345555443221  1 234


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++|||++|..+
T Consensus        92 ~lv~e~~~g~~L  103 (311)
T 3ork_A           92 YIVMEYVDGVTL  103 (311)
T ss_dssp             EEEEECCCEEEH
T ss_pred             EEEEecCCCCCH
Confidence            999999998643

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=97.95  E-value=2.2e-05  Score=70.59  Aligned_cols=73  Identities=15%  Similarity=-0.018  Sum_probs=49.0

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc--C-CCceEEEEecccC
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P-TGGSYIIMEFIEF  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~-~~~~~~v~e~l~G  102 (299)
                      +.+|.|..+.||++... .+ .|.+|+...  .....+|...+..+..+  -.+++++.....  . .+..+++|||++|
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~--~~~~~~E~~~~~~~~~h--p~iv~l~~~~~~~~~~~~~~~lv~E~~~g  143 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQC--PHIVRIVDVYENLYAGRKCLLIVMECLDG  143 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTS--TTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCc--chhHHHHHHHHHHhcCC--CCcceEeEEEeecccCCcEEEEEEEeCCC
Confidence            46788888999999864 33 789998754  24467788877655443  245566653221  1 2457899999998


Q ss_pred             CC
Q 022304          103 GS  104 (299)
Q Consensus       103 ~~  104 (299)
                      ..
T Consensus       144 g~  145 (400)
T 1nxk_A          144 GE  145 (400)
T ss_dssp             EE
T ss_pred             Cc
Confidence            63

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=97.94  E-value=4.2e-05  Score=65.65  Aligned_cols=74  Identities=15%  Similarity=-0.027  Sum_probs=49.5

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc--C-CCceEEEEecccC
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P-TGGSYIIMEFIEF  102 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~-~~~~~~v~e~l~G  102 (299)
                      +.+|.|..+.||++... .+ .|++|+...  ......|...+..+..+  -.+++++.....  . .+..+++||+++|
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~e~~~~~~~~~h--~~i~~~~~~~~~~~~~~~~~~lv~e~~~~   99 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQC--PHIVRIVDVYENLYAGRKCLLIVMECLDG   99 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTS--TTBCCEEEEEEEEETTEEEEEEEECCCCS
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc--cHHHHHHHHHHHHhccC--CCchhHHhhhhhhcCCCceEEEEEeecCC
Confidence            45788888999999863 33 789998764  34567788877555443  345555544321  1 2467999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus       100 ~~L  102 (299)
T 3m2w_A          100 GEL  102 (299)
T ss_dssp             CBH
T ss_pred             CcH
Confidence            633

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=97.94  E-value=5.6e-05  Score=66.16  Aligned_cols=78  Identities=13%  Similarity=0.006  Sum_probs=52.3

Q ss_pred             eeeeeeCCccccceEEEEeC--Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCC---CccceeecccCCCceEEE
Q 022304           25 TKICPVGGGCINLASRYGTD--AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIR---APRPFKVGALPTGGSYII   96 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~---vP~~~~~~~~~~~~~~~v   96 (299)
                      .-++.+|.|..+.||++...  ++ .+++|+....  ....+..|+.+++.|.......   +..++..... .+..+++
T Consensus        22 ~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~lv  100 (355)
T 2eu9_A           22 EIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF-HGHMCIA  100 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE-TTEEEEE
T ss_pred             EEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee-CCeEEEE
Confidence            34677888988999998763  22 6889988642  2345678999999997643222   3333333222 5688999


Q ss_pred             EecccCC
Q 022304           97 MEFIEFG  103 (299)
Q Consensus        97 ~e~l~G~  103 (299)
                      ||++.|.
T Consensus       101 ~e~~~~~  107 (355)
T 2eu9_A          101 FELLGKN  107 (355)
T ss_dssp             EECCCCB
T ss_pred             EeccCCC
Confidence            9999653

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=97.94  E-value=1.3e-05  Score=73.89  Aligned_cols=75  Identities=13%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             eeeeeCCccccceEEEEeC--CccEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD--AGSFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -.+.+|.|..+.||++...  +..+++|+...      .....+.+|+..++.+..   -.+.+++..... .+..+++|
T Consensus        20 l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~H---pnIv~l~~~~~~-~~~~~lv~   95 (476)
T 2y94_A           20 LGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRH---PHIIKLYQVIST-PSDIFMVM   95 (476)
T ss_dssp             EEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCC---CCCCcEEEEEEE-CCEEEEEE
Confidence            3577899988999999864  33789998743      123456788887776642   245666655443 56789999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      |+++|..
T Consensus        96 E~~~gg~  102 (476)
T 2y94_A           96 EYVSGGE  102 (476)
T ss_dssp             ECCSSEE
T ss_pred             eCCCCCc
Confidence            9998863

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=97.94  E-value=2.6e-05  Score=69.18  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -.+.+|.|..+.||++... .+ .|.+|+.....     ...+.+|+.+++.|. +  -.+++++..... .+..+++||
T Consensus        33 ~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~-h--pnIv~~~~~~~~-~~~~~lv~e  108 (362)
T 2bdw_A           33 VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQ-H--PNIVRLHDSIQE-ESFHYLVFD  108 (362)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCC-C--TTBCCEEEEEEC-SSEEEEEEC
T ss_pred             EeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCC-C--CCCCeEEEEEEe-CCEEEEEEe
Confidence            3567888888999998764 33 78899875421     234678998888884 2  245666655443 568899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      +++|..
T Consensus       109 ~~~gg~  114 (362)
T 2bdw_A          109 LVTGGE  114 (362)
T ss_dssp             CCCSCB
T ss_pred             cCCCCC
Confidence            999864

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=97.93  E-value=3.3e-05  Score=68.10  Aligned_cols=76  Identities=17%  Similarity=-0.001  Sum_probs=50.8

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCc---cceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAP---RPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP---~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.+|.|..+.||++... ++ .+++|+....  .......|..+++.+... .+..|   +++..... .+..+++|
T Consensus        38 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~-~~~h~~iv~~~~~~~~-~~~~~lv~  115 (360)
T 3llt_A           38 LVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQND-DINNNNIVKYHGKFMY-YDHMCLIF  115 (360)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCC-STTGGGBCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhccc-CCCCCCeecccceeeE-CCeeEEEE
Confidence            34678898988999999873 33 7889987642  123456788888888642 23334   44433322 46789999


Q ss_pred             ecccCC
Q 022304           98 EFIEFG  103 (299)
Q Consensus        98 e~l~G~  103 (299)
                      |++ |.
T Consensus       116 e~~-~~  120 (360)
T 3llt_A          116 EPL-GP  120 (360)
T ss_dssp             CCC-CC
T ss_pred             cCC-CC
Confidence            999 54

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.93  E-value=3.3e-05  Score=65.84  Aligned_cols=71  Identities=14%  Similarity=0.040  Sum_probs=50.3

Q ss_pred             eeCCccccceEEEEeC---Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTD---AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~---~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|..+.||++...   .+ .+++|+.....    ...+..|+.+++.|. +  -.+++++....  .+..+++||++
T Consensus        17 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~i~~~~~~~~--~~~~~lv~e~~   91 (287)
T 1u59_A           17 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD-N--PYIVRLIGVCQ--AEALMLVMEMA   91 (287)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCC-C--TTBCCEEEEEE--SSSEEEEEECC
T ss_pred             cccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCC-C--CCEeEEEEEec--CCCcEEEEEeC
Confidence            7888888999998642   33 68889886532    244668888888884 2  34566666543  46789999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|..
T Consensus        92 ~~~~   95 (287)
T 1u59_A           92 GGGP   95 (287)
T ss_dssp             TTEE
T ss_pred             CCCC
Confidence            9863

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=97.92  E-value=8.9e-05  Score=65.73  Aligned_cols=48  Identities=8%  Similarity=-0.032  Sum_probs=34.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC------cchHHHHHHHHHHHHh
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG------PSMFEGEALGLGAMYE   73 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~------~~~~~~E~~~l~~L~~   73 (299)
                      -...+|.|..+.||++... ++ .|++|+.....      ...+..|+.+++.|..
T Consensus        66 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~  121 (371)
T 3q60_A           66 LVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG  121 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc
Confidence            3567888888999999853 34 78899876521      2446678777888863

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=97.92  E-value=5.7e-05  Score=66.16  Aligned_cols=75  Identities=15%  Similarity=0.083  Sum_probs=51.7

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      .-++.+|.|..+.||++... ++ .+++|+....           ....+..|+.+++.|. +  -.+++++..... .+
T Consensus        27 ~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~~Iv~~~~~~~~-~~  102 (335)
T 3dls_A           27 STMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVE-H--ANIIKVLDIFEN-QG  102 (335)
T ss_dssp             EEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCC-C--TTBCCEEEEEEC-SS
T ss_pred             EEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCC-C--CCEeeEEEEEee-CC
Confidence            34578899988999999753 34 7888977532           1234667998888774 2  345666665433 56


Q ss_pred             ceEEEEecccCC
Q 022304           92 GSYIIMEFIEFG  103 (299)
Q Consensus        92 ~~~~v~e~l~G~  103 (299)
                      ..+++|++..+.
T Consensus       103 ~~~lv~e~~~~g  114 (335)
T 3dls_A          103 FFQLVMEKHGSG  114 (335)
T ss_dssp             EEEEEEECCTTS
T ss_pred             EEEEEEEeCCCC
Confidence            789999988654

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=97.92  E-value=6.1e-05  Score=69.42  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=53.6

Q ss_pred             eeeeCCccccceEEEEeC--CccEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD--AGSFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ++.+|.|..+.||++...  +..|.+|+...     .....+.+|+.+++.|..   -.+++++..... .+..+++|++
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~-~~~~~lv~e~  102 (486)
T 3mwu_A           27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH---PNIMKLFEILED-SSSFYIVGEL  102 (486)
T ss_dssp             EEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCC---TTBCCEEEEEEC-SSEEEEEECC
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCC---CCcCeEEEEEEc-CCEEEEEEEc
Confidence            577899999999999864  33788998632     233557789999988842   245666665443 5688999999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|..
T Consensus       103 ~~~~~  107 (486)
T 3mwu_A          103 YTGGE  107 (486)
T ss_dssp             CCSCB
T ss_pred             CCCCc
Confidence            99864

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=97.92  E-value=4.5e-05  Score=70.49  Aligned_cols=75  Identities=15%  Similarity=0.099  Sum_probs=50.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.+|.|..+.||++... .+ .+.+|+...     .....+..|+.+++.|..   -.+++++..... .+..+++||
T Consensus        41 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~-~~~~~lv~e  116 (494)
T 3lij_A           41 RVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDH---PNIMKLYDFFED-KRNYYLVME  116 (494)
T ss_dssp             EEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCC---TTBCCEEEEEEC-SSEEEEEEE
T ss_pred             EeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCC---CCCCeEEEEEEe-CCEEEEEEe
Confidence            3578899999999999874 33 788887653     123456788888877742   245666665443 567899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      +++|..
T Consensus       117 ~~~~g~  122 (494)
T 3lij_A          117 CYKGGE  122 (494)
T ss_dssp             CCCSCB
T ss_pred             cCCCCc
Confidence            999863

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.91  E-value=2.2e-05  Score=73.99  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=51.7

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      .+.||.|..+.||++... .| .|.+|+-...   ....+.+|+.+|+.|..   -.+.+++..... .+..+++|||++
T Consensus       162 ~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~h---pnIv~l~~~~~~-~~~~~iv~E~~~  237 (573)
T 3uto_A          162 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRH---PTLVNLHDAFED-DNEMVMIYEFMS  237 (573)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCC---TTBCCEEEEEEC-SSEEEEEEECCC
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCC---CCCCeEEEEEEE-CCEEEEEEeecC
Confidence            467888989999998863 34 7778865432   23457789999988853   134455544333 578899999999


Q ss_pred             CCC
Q 022304          102 FGS  104 (299)
Q Consensus       102 G~~  104 (299)
                      |+.
T Consensus       238 gg~  240 (573)
T 3uto_A          238 GGE  240 (573)
T ss_dssp             CCB
T ss_pred             CCc
Confidence            974

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=97.91  E-value=0.00014  Score=64.31  Aligned_cols=77  Identities=13%  Similarity=0.066  Sum_probs=51.2

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccC----CCc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~   92 (299)
                      .-.-++.+|.|..+.||++... ++ .+++|......    ...+.+|+.++..|..   -.+++++......    ...
T Consensus        28 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           28 RYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRH---ENIIGINDIIRAPTIEQMKD  104 (364)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCC---TTBCCCCEEECCSSTTTCCC
T ss_pred             cEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCC---CCCccceeEEecCCccccce
Confidence            3445678898988999999764 33 78899876421    1345678888888853   2344555433221    246


Q ss_pred             eEEEEecccC
Q 022304           93 SYIIMEFIEF  102 (299)
Q Consensus        93 ~~~v~e~l~G  102 (299)
                      .+++|++++|
T Consensus       105 ~~iv~e~~~~  114 (364)
T 3qyz_A          105 VYIVQDLMET  114 (364)
T ss_dssp             EEEEEECCSE
T ss_pred             EEEEEcccCc
Confidence            7999999987

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=97.90  E-value=3.8e-05  Score=65.49  Aligned_cols=76  Identities=12%  Similarity=0.021  Sum_probs=47.4

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeeccc--C-CCceEEE
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P-TGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~-~~~~~~v   96 (299)
                      ...+|.|..+.||++.... + .+.+|.....     ....+..|..+++.|..   -.+++++.....  . ....+++
T Consensus        31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQH---PNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCC---TTBCCEEEEEEEESSSCEEEEEE
T ss_pred             eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCC---CCeeeeeeeeccccCCCceEEEE
Confidence            3568888889999997643 3 5677776431     12345677777766642   234555543221  1 2457999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+++|..+
T Consensus       108 ~e~~~~~~L  116 (290)
T 1t4h_A          108 TELMTSGTL  116 (290)
T ss_dssp             EECCCSCBH
T ss_pred             EEecCCCCH
Confidence            999998643

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=97.89  E-value=7.5e-05  Score=67.07  Aligned_cols=71  Identities=13%  Similarity=0.047  Sum_probs=44.8

Q ss_pred             eeCCccccceEEEEeC---Cc-cEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEecccC
Q 022304           29 PVGGGCINLASRYGTD---AG-SFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEFIEF  102 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~---~g-~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~l~G  102 (299)
                      .+|.|..+.||++...   .+ .|++|+.... ....+.+|+.+++.|..   -.+.+++...... ....+++|++++|
T Consensus        28 ~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~~~~~~~~lv~e~~~~  104 (405)
T 3rgf_A           28 KVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKH---PNVISLQKVFLSHADRKVWLLFDYAEH  104 (405)
T ss_dssp             CCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCC---TTBCCCCEEEEETTTTEEEEEEECCSE
T ss_pred             EeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCC---CCeeeEeeEEecCCCCeEEEEEeCCCC
Confidence            5888988999999853   23 7899987642 23457789999988853   2344455433211 4578999999987

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=97.88  E-value=5.9e-05  Score=65.67  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-----cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-----SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-----~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      +..-+..+|.|..+.||++... ++     ++++|.....    ....+..|+.+++.+..   -.+++++....  .+.
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~--~~~   90 (327)
T 3poz_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN---PHVCRLLGICL--TST   90 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCB---TTBCCEEEEEE--SSS
T ss_pred             HcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCC---CCEeEEEEEEe--cCC
Confidence            4455678899989999998752 33     3577776431    23457788988888853   34566776554  356


Q ss_pred             eEEEEecccCCC
Q 022304           93 SYIIMEFIEFGS  104 (299)
Q Consensus        93 ~~~v~e~l~G~~  104 (299)
                      .+++++++++..
T Consensus        91 ~~~v~e~~~~g~  102 (327)
T 3poz_A           91 VQLITQLMPFGC  102 (327)
T ss_dssp             EEEEEECCTTCB
T ss_pred             eEEEEEecCCCc
Confidence            789999998863

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=97.88  E-value=7.6e-05  Score=64.33  Aligned_cols=80  Identities=18%  Similarity=0.116  Sum_probs=47.4

Q ss_pred             ceeeeeeeCCccccceEEEEeCC--c---cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC---
Q 022304           23 HITKICPVGGGCINLASRYGTDA--G---SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP---   89 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~--g---~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---   89 (299)
                      ...-.+.++.|..+.||++....  +   .+++|......     ...+..|+..++.|..   -.+.+++......   
T Consensus        35 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           35 LLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSH---PNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             GEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCC---TTBCCCCEEEEC----
T ss_pred             HeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCC---CCeeeeeEEEeecccc
Confidence            34445778888889999986532  1   68999876421     1335677777776642   2345555443221   


Q ss_pred             -CCceEEEEecccCCCC
Q 022304           90 -TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        90 -~~~~~~v~e~l~G~~~  105 (299)
                       ....+++|++++|.++
T Consensus       112 ~~~~~~~v~e~~~~~~L  128 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDL  128 (313)
T ss_dssp             ---CEEEEEECCTTCBH
T ss_pred             CCcccEEEEecccCCCH
Confidence             1246999999998643

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=97.88  E-value=8e-05  Score=63.32  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=45.7

Q ss_pred             ceeeeeeeCCccccceEEEEe--CCc---cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGT--DAG---SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~--~~g---~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-++.++.|..+.||++..  .++   .+++|+....   .   ...+..|...++.|. +  -.+++++....  .+
T Consensus        19 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h--~~i~~~~~~~~--~~   93 (291)
T 1u46_A           19 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD-H--RNLIRLYGVVL--TP   93 (291)
T ss_dssp             GEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCC-C--TTBCCEEEEEC--SS
T ss_pred             HeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCC-C--CCcccEEEEEc--cC
Confidence            344467789898899999874  233   4788987542   1   234567888877774 2  34566666544  24


Q ss_pred             ceEEEEecccCCC
Q 022304           92 GSYIIMEFIEFGS  104 (299)
Q Consensus        92 ~~~~v~e~l~G~~  104 (299)
                      ..++++++++|..
T Consensus        94 ~~~~v~e~~~~~~  106 (291)
T 1u46_A           94 PMKMVTELAPLGS  106 (291)
T ss_dssp             SCEEEEECCTTCB
T ss_pred             CceeeEecccCCC
Confidence            5899999999864

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=97.88  E-value=2.1e-05  Score=70.56  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++.+|.|..+.||++... .+ .+++|+.....   ...+..|+.+++.|..   -.+++++..... .+..+++||+++
T Consensus        56 ~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~h---pnIv~~~~~~~~-~~~~~lv~E~~~  131 (387)
T 1kob_A           56 LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHH---PKLINLHDAFED-KYEMVLILEFLS  131 (387)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCS---TTBCCEEEEEEC-SSEEEEEEECCC
T ss_pred             EEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCC---cCCCeEEEEEEe-CCEEEEEEEcCC
Confidence            567888988999998764 33 78888875432   2346678887776642   245556655433 568899999999


Q ss_pred             CCC
Q 022304          102 FGS  104 (299)
Q Consensus       102 G~~  104 (299)
                      |..
T Consensus       132 gg~  134 (387)
T 1kob_A          132 GGE  134 (387)
T ss_dssp             CCB
T ss_pred             CCc
Confidence            864

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=97.87  E-value=2.6e-05  Score=68.19  Aligned_cols=75  Identities=12%  Similarity=0.022  Sum_probs=53.2

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCC--------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRS--------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~--------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      .+.+|.|..+.||++.... + .+++|+...        .....+..|+.+++.|. +  -.+++++..... .+..+++
T Consensus        31 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--pniv~~~~~~~~-~~~~~lv  106 (345)
T 3hko_A           31 KGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLH-H--PNIARLYEVYED-EQYICLV  106 (345)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCC-C--TTBCCEEEEEEC-SSEEEEE
T ss_pred             cceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCC-C--CCcceeehhhcc-CCeEEEE
Confidence            5678888889999997643 3 688897642        12245678998888885 2  346667765543 5678999


Q ss_pred             EecccCCCC
Q 022304           97 MEFIEFGSS  105 (299)
Q Consensus        97 ~e~l~G~~~  105 (299)
                      ||+++|..+
T Consensus       107 ~e~~~gg~L  115 (345)
T 3hko_A          107 MELCHGGHL  115 (345)
T ss_dssp             EECCCSCBH
T ss_pred             EeCCCCCcH
Confidence            999999744

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=97.86  E-value=3.7e-05  Score=65.94  Aligned_cols=74  Identities=16%  Similarity=0.054  Sum_probs=48.1

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEE
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYII   96 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v   96 (299)
                      .+.+|.|..+.||++.... + .+++|+....       ....+..|+..++.|..   -.+.+++...... ....+++
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~~~~~~~~lv   86 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRH---KNVIQLVDVLYNEEKQKMYMV   86 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCC---TTBCCEEEEEECC---CEEEE
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCC---CCeeEEEEEEEcCCCCeEEEE
Confidence            4567888888999998743 3 7889987531       12446778877776642   2355555543211 3578999


Q ss_pred             EecccCC
Q 022304           97 MEFIEFG  103 (299)
Q Consensus        97 ~e~l~G~  103 (299)
                      ||+++|.
T Consensus        87 ~e~~~~~   93 (305)
T 2wtk_C           87 MEYCVCG   93 (305)
T ss_dssp             EECCSEE
T ss_pred             ehhccCC
Confidence            9999875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=97.85  E-value=6.5e-05  Score=66.44  Aligned_cols=75  Identities=16%  Similarity=0.124  Sum_probs=47.2

Q ss_pred             eeeeCCccccceEEEEeCC-------ccEEEEecCCCCcchHHHHHHHHHHHHhc---------C---CCCCccceeecc
Q 022304           27 ICPVGGGCINLASRYGTDA-------GSFFVKTNRSIGPSMFEGEALGLGAMYET---------R---TIRAPRPFKVGA   87 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-------g~~vlK~~~~~~~~~~~~E~~~l~~L~~~---------~---~~~vP~~~~~~~   87 (299)
                      .+.+|.|..+.||++....       ..+++|+..... ..+..|..+++.+...         .   ...+++++....
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~  118 (364)
T 3op5_A           40 GLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN-GPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGL  118 (364)
T ss_dssp             EEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC-HHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEE
T ss_pred             EEEEecCCCeEEEEeeecCccccccccceEEEEeeccc-hhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeee
Confidence            5778999999999997643       368999876533 3456677766655430         1   123556665443


Q ss_pred             cC-C--CceEEEEecccCC
Q 022304           88 LP-T--GGSYIIMEFIEFG  103 (299)
Q Consensus        88 ~~-~--~~~~~v~e~l~G~  103 (299)
                      .. .  ...+++||++ |.
T Consensus       119 ~~~~~~~~~~lv~e~~-g~  136 (364)
T 3op5_A          119 HDKNGKSYRFMIMDRF-GS  136 (364)
T ss_dssp             EEETTEEEEEEEEECE-EE
T ss_pred             eccCCcceEEEEEeCC-CC
Confidence            21 1  3479999999 65

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=97.85  E-value=8.7e-05  Score=64.01  Aligned_cols=75  Identities=12%  Similarity=0.090  Sum_probs=52.1

Q ss_pred             eeeeeeeCCccccceEEEEeCCc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      ..-++.+|.|..+.||++...++ .+++|+....     ....+..|+..+..|..+ .-.+.+++..... .+..+++|
T Consensus        30 y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~~~iv~~~~~~~~-~~~~~lv~  107 (313)
T 3cek_A           30 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH-SDKIIRLYDYEIT-DQYIYMVM  107 (313)
T ss_dssp             EEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGG-CTTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhcccc-CCceEEEEEEeec-CCEEEEEE
Confidence            33457889898899999987655 6888987532     124567899999999753 2345666665443 46789999


Q ss_pred             ecc
Q 022304           98 EFI  100 (299)
Q Consensus        98 e~l  100 (299)
                      |+.
T Consensus       108 e~~  110 (313)
T 3cek_A          108 ECG  110 (313)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            943

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=97.84  E-value=0.00023  Score=64.55  Aligned_cols=77  Identities=12%  Similarity=0.002  Sum_probs=51.7

Q ss_pred             ceeeeeeeCCccccceEEEEeCC-c-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC----CC
Q 022304           23 HITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~   91 (299)
                      .-.-.+.+|.|..+.||++.... + .+.+|......     ...+.+|+.+++.|..   -.+.+++......    ..
T Consensus        27 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           27 NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKS---DYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCC---TTBCCEEEECCCSCTTTCC
T ss_pred             CEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCC---CCcceEEEEEecCCCCcCC
Confidence            44446788989889999998643 3 68889875421     2346688888888853   2455566543321    14


Q ss_pred             ceEEEEecccC
Q 022304           92 GSYIIMEFIEF  102 (299)
Q Consensus        92 ~~~~v~e~l~G  102 (299)
                      ..|++||+++|
T Consensus       104 ~~~lv~e~~~~  114 (432)
T 3n9x_A          104 ELYIVLEIADS  114 (432)
T ss_dssp             CEEEEEECCSE
T ss_pred             eEEEEEecCCc
Confidence            68999999876

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=97.83  E-value=7.2e-05  Score=63.70  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=53.0

Q ss_pred             eeeeeeCCccccceEEEEeC--CccEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTD--AGSFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~--~g~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.++.|..+.||++...  +..+++|+...     .....+.+|+..++.|..   -.+++++..... .+..++++
T Consensus        25 ~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~-~~~~~lv~  100 (287)
T 2wei_A           25 NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH---PNIMKLFEILED-SSSFYIVG  100 (287)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             eeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccC---CCccEEEEEEeC-CCeEEEEE
Confidence            34577888888999999874  33789998642     123456788888877732   245666655433 56789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus       101 e~~~~~~L  108 (287)
T 2wei_A          101 ELYTGGEL  108 (287)
T ss_dssp             CCCCSCBH
T ss_pred             EccCCCCH
Confidence            99988643

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.83  E-value=4.6e-05  Score=68.32  Aligned_cols=77  Identities=22%  Similarity=0.154  Sum_probs=52.8

Q ss_pred             eeeeeCCccccceEEEEeCC-c-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTDA-G-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e   98 (299)
                      -.+.+|.|..+.||++.... + .+++|+....    ....+.+|+.+++.|..   -.+++++...... ....+++||
T Consensus        13 i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~~~~~~~~~~~~~~~lv~e   89 (396)
T 4eut_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNH---KNIVKLFAIEEETTTRHKVLIME   89 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCC---TTBCCEEEEEECTTTCCEEEEEC
T ss_pred             EEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCC---CCCCeEEEeeccCCCCeeEEEEe
Confidence            35678888889999998753 3 7889987531    23445688888888852   3456666554332 236799999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        90 ~~~~g~L   96 (396)
T 4eut_A           90 FCPCGSL   96 (396)
T ss_dssp             CCTTEEH
T ss_pred             cCCCCCH
Confidence            9998643

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=97.83  E-value=0.0001  Score=63.91  Aligned_cols=78  Identities=12%  Similarity=-0.103  Sum_probs=54.2

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ...-.+.++.|..+.||++... ++ .+++|+....         ....+..|..+++.+... -..+++++..... .+
T Consensus        44 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-~~~i~~~~~~~~~-~~  121 (320)
T 3a99_A           44 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG-FSGVIRLLDWFER-PD  121 (320)
T ss_dssp             TEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSS-SCSBCCEEEEEEC-SS
T ss_pred             ceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccC-CCCceEEEEEEec-CC
Confidence            4445678899988999999753 33 7889986431         124467899999888641 1346667765443 56


Q ss_pred             ceEEEEecccC
Q 022304           92 GSYIIMEFIEF  102 (299)
Q Consensus        92 ~~~~v~e~l~G  102 (299)
                      ..++++++..+
T Consensus       122 ~~~lv~e~~~~  132 (320)
T 3a99_A          122 SFVLILERPEP  132 (320)
T ss_dssp             EEEEEEECCSS
T ss_pred             cEEEEEEcCCC
Confidence            78999999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=97.83  E-value=5.8e-05  Score=65.06  Aligned_cols=77  Identities=10%  Similarity=-0.126  Sum_probs=48.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC---------CcchHHHHHHHHHHHHhcC-CCCCccceeecccCCCce
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---------GPSMFEGEALGLGAMYETR-TIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~-~~~vP~~~~~~~~~~~~~   93 (299)
                      -.+.++.|..+.||++... ++ .+++|+....         ....+..|...+..+.... .-.+++++..... .+..
T Consensus        35 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~-~~~~  113 (312)
T 2iwi_A           35 LGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFET-QEGF  113 (312)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC------C
T ss_pred             EeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEec-CCeE
Confidence            4567888888999999763 33 7999987532         1234567899898886321 1235556655433 4678


Q ss_pred             EEEEec-ccCC
Q 022304           94 YIIMEF-IEFG  103 (299)
Q Consensus        94 ~~v~e~-l~G~  103 (299)
                      ++++++ ++|.
T Consensus       114 ~~v~e~~~~~~  124 (312)
T 2iwi_A          114 MLVLERPLPAQ  124 (312)
T ss_dssp             EEEEECCSSEE
T ss_pred             EEEEEecCCCC
Confidence            899998 6665

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=97.82  E-value=7.7e-05  Score=66.50  Aligned_cols=57  Identities=11%  Similarity=0.009  Sum_probs=36.8

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCcccee
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFK   84 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~   84 (299)
                      -.-.+.+|.|..+.||++... .| .|.+|...... ....+|..+++.|..   -.+.+++.
T Consensus         9 y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~-~~~~~E~~il~~l~h---pnIv~l~~   67 (383)
T 3eb0_A            9 YSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP-RYKNRELDIMKVLDH---VNIIKLVD   67 (383)
T ss_dssp             EEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT-TSCCHHHHHHTTCCC---TTBCCEEE
T ss_pred             EEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc-chHHHHHHHHHHcCC---CCccchhh
Confidence            344678899999999999763 33 78889775432 224578888877742   23445544

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=97.81  E-value=2.8e-05  Score=66.41  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeeccc-----------C-
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL-----------P-   89 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~-----------~-   89 (299)
                      -++.++.|..+.||++... ++ .+++|+....  ....+..|+.+++.+..   -.+.+++.....           . 
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~~~~~~~~~~~~~~~   86 (303)
T 1zy4_A           10 EIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNH---QYVVRYYAAWLERRNFVKPMTAVKK   86 (303)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCC---TTBCCEEEEEEECCCCCC------C
T ss_pred             hhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHhhcchhhhhccccc
Confidence            4567888888999999863 34 7888987532  12345677777766632   233444432110           0 


Q ss_pred             CCceEEEEecccCCC
Q 022304           90 TGGSYIIMEFIEFGS  104 (299)
Q Consensus        90 ~~~~~~v~e~l~G~~  104 (299)
                      .+..+++||+++|..
T Consensus        87 ~~~~~lv~e~~~~~~  101 (303)
T 1zy4_A           87 KSTLFIQMEYCENGT  101 (303)
T ss_dssp             EEEEEEEEECCCSCB
T ss_pred             CCceEEEEecCCCCC
Confidence            246799999999863

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=97.81  E-value=5.4e-05  Score=65.68  Aligned_cols=74  Identities=15%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             eeeeCCccccceEEEEeCC-c-cEEEEecCCC-----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           27 ICPVGGGCINLASRYGTDA-G-SFFVKTNRSI-----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~-----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      .+.+|.|..+.||++.... + .+++|+....           ....+..|+.+++.|..   -.+++++....  .+..
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~i~~~~~~~~--~~~~   89 (322)
T 2ycf_A           15 SKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNH---PCIIKIKNFFD--AEDY   89 (322)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCC---TTBCCEEEEEE--SSSE
T ss_pred             eeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCC---CCCceEeeEEc--CCce
Confidence            4678888889999998643 3 7899986431           12346789988888842   23555665443  3458


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++||+++|..+
T Consensus        90 ~lv~e~~~~~~L  101 (322)
T 2ycf_A           90 YIVLELMEGGEL  101 (322)
T ss_dssp             EEEEECCTTEET
T ss_pred             EEEEecCCCCcH
Confidence            999999998644

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=97.80  E-value=8.9e-05  Score=64.60  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-----cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-----SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-----~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      ...-++.+|.|..+.||++... ++     ++++|.....    ....+..|+.+++.+..   -.+++++....  .+.
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~--~~~   90 (327)
T 3lzb_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN---PHVCRLLGICL--TST   90 (327)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCB---TTBCCCCEEEE--SSS
T ss_pred             HceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCC---CCeeEEEEEEe--cCC
Confidence            4555678898988999999853 33     3467765431    23456778887777642   23555665543  346


Q ss_pred             eEEEEecccCCC
Q 022304           93 SYIIMEFIEFGS  104 (299)
Q Consensus        93 ~~~v~e~l~G~~  104 (299)
                      .+++++++++..
T Consensus        91 ~~~v~~~~~~g~  102 (327)
T 3lzb_A           91 VQLITQLMPFGC  102 (327)
T ss_dssp             EEEEECCCSSCB
T ss_pred             ceEEEEecCCCc
Confidence            789999998863

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=97.80  E-value=6.6e-05  Score=68.21  Aligned_cols=75  Identities=16%  Similarity=-0.032  Sum_probs=51.3

Q ss_pred             eeeeeeCCccccceEEEEeCCc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           25 TKICPVGGGCINLASRYGTDAG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ...+.+|.|..+.||.....+| .+.+|............|..++..+..+  -.+++++..... .+..+++||+++|
T Consensus        18 ~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~H--pnIv~~~~~~~~-~~~~~lv~E~~~g   93 (434)
T 2rio_A           18 VSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDH--PNVIRYYCSETT-DRFLYIALELCNL   93 (434)
T ss_dssp             EEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTS--TTBCCEEEEEEC-SSEEEEEECCCSE
T ss_pred             eccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCC--CCcCeEEEEEec-CCeEEEEEecCCC
Confidence            3346688888888877665555 7889976543334467888888877544  245666655443 4678999999976

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=97.79  E-value=5.2e-05  Score=66.12  Aligned_cols=74  Identities=16%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .-++.+|.|..+.||++... .+ .+++|+.....     ...+.+|+.+++.|..   -.+.+++..... .+..+++|
T Consensus        37 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~  112 (329)
T 3gbz_A           37 RRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQH---RNIIELKSVIHH-NHRLHLIF  112 (329)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCC---TTBCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCC---CCcceEEEEEec-CCEEEEEE
Confidence            34577888888999999753 33 78899875321     2345678887777742   235556655433 56889999


Q ss_pred             ecccC
Q 022304           98 EFIEF  102 (299)
Q Consensus        98 e~l~G  102 (299)
                      |+++|
T Consensus       113 e~~~~  117 (329)
T 3gbz_A          113 EYAEN  117 (329)
T ss_dssp             ECCSE
T ss_pred             ecCCC
Confidence            99987

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=97.79  E-value=0.00014  Score=64.54  Aligned_cols=74  Identities=18%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CC
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TG   91 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~   91 (299)
                      -.-++.+|.|..+.||++... .| .+.+|......     ...+.+|+.+++.|..   -.+.+++......     ..
T Consensus        27 y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           27 YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRH---ENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCB---TTBCCCSEEECSCSSTTTCC
T ss_pred             EEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCC---cCCCCceeeEecCCccccCc
Confidence            344678899988999999863 33 78899774321     2345678888888853   2344454432221     13


Q ss_pred             ceEEEEecc
Q 022304           92 GSYIIMEFI  100 (299)
Q Consensus        92 ~~~~v~e~l  100 (299)
                      ..+++||++
T Consensus       104 ~~~lv~e~~  112 (367)
T 1cm8_A          104 DFYLVMPFM  112 (367)
T ss_dssp             CCEEEEECC
T ss_pred             eEEEEEecC
Confidence            469999999

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=97.79  E-value=0.00011  Score=66.89  Aligned_cols=76  Identities=18%  Similarity=-0.006  Sum_probs=51.4

Q ss_pred             eeeeeeeCCccccceEEEEeC-CccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           24 ITKICPVGGGCINLASRYGTD-AGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      ....+.+|.|..+.|+..... +..+.+|...........+|..+++.+..+  -.+.+++..... ....+++||+++|
T Consensus        26 y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~H--pnIv~l~~~~~~-~~~~~lv~E~~~g  102 (432)
T 3p23_A           26 FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEH--PNVIRYFCTEKD-RQFQYIAIELCAA  102 (432)
T ss_dssp             EEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCC--TTBCCEEEEEEE-TTEEEEEEECCSE
T ss_pred             EecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCC--CCcCeEEEEEec-CCEEEEEEECCCC
Confidence            334567888887775554444 448899987654445567899988887544  245566655433 5678999999976

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=97.78  E-value=0.00016  Score=63.58  Aligned_cols=75  Identities=11%  Similarity=-0.126  Sum_probs=35.6

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccC------CCceEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP------TGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~------~~~~~~   95 (299)
                      -.+.+|.|..+.||++... ++ .+++|.....  .......|...+..+. +  -.+.+++.+....      ....++
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~-h--~niv~~~~~~~~~~~~~~~~~~~~l  103 (360)
T 3e3p_A           27 VERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLH-H--PNIVQLQSYFYTLGERDRRDIYLNV  103 (360)
T ss_dssp             EC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHC-C--TTBCCEEEEEEEECSSCTTCEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcC-C--CCcccHHHhhhccccccccceeEEE
Confidence            3467888888999999874 33 7889976432  2233334444444443 2  2355555432210      123689


Q ss_pred             EEecccCC
Q 022304           96 IMEFIEFG  103 (299)
Q Consensus        96 v~e~l~G~  103 (299)
                      +||+++|.
T Consensus       104 v~e~~~~~  111 (360)
T 3e3p_A          104 VMEYVPDT  111 (360)
T ss_dssp             EEECCSCB
T ss_pred             Eeeccccc
Confidence            99999874

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=97.78  E-value=7.7e-05  Score=66.35  Aligned_cols=79  Identities=10%  Similarity=-0.056  Sum_probs=51.8

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCC-----CCCccceeeccc---CCCc
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRT-----IRAPRPFKVGAL---PTGG   92 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~-----~~vP~~~~~~~~---~~~~   92 (299)
                      .-++.+|.|..+.||++... ++ .+++|+.....  ...+.+|+.+++.|.....     ..+.+++.....   ....
T Consensus        40 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~  119 (397)
T 1wak_A           40 HVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTH  119 (397)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEE
T ss_pred             EEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCce
Confidence            34577888888999999764 33 78899886432  3456789999999975321     114444443221   1246


Q ss_pred             eEEEEecccCC
Q 022304           93 SYIIMEFIEFG  103 (299)
Q Consensus        93 ~~~v~e~l~G~  103 (299)
                      .+++|+++.|.
T Consensus       120 ~~lv~e~~~~~  130 (397)
T 1wak_A          120 ICMVFEVLGHH  130 (397)
T ss_dssp             EEEEECCCCCB
T ss_pred             EEEEEeccCcc
Confidence            79999999653

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=97.77  E-value=0.0002  Score=62.74  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=51.3

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccC----CCc
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGG   92 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~   92 (299)
                      ...-.+.+|.|..+.||++... .| .+++|......    ...+.+|+.+++.|..   -.+++++......    ...
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A           12 DFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKH---ENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCC---TTBCCEEEECCCSCSTTCCC
T ss_pred             ceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcC---CCcCCeeeeecccccCccce
Confidence            3444677888888999999864 34 78899875422    1334578888887742   2455666543321    257


Q ss_pred             eEEEEecccC
Q 022304           93 SYIIMEFIEF  102 (299)
Q Consensus        93 ~~~v~e~l~G  102 (299)
                      .+++||+++|
T Consensus        89 ~~lv~e~~~~   98 (353)
T 2b9h_A           89 VYIIQELMQT   98 (353)
T ss_dssp             EEEEECCCSE
T ss_pred             EEEEEeccCc
Confidence            8999999976

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=97.77  E-value=4.3e-05  Score=69.69  Aligned_cols=76  Identities=12%  Similarity=-0.042  Sum_probs=43.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -++.+|.|..+.||++... .| .|.+|+...      .....+..|..+++.+..   -.+++++..... .+..+++|
T Consensus       152 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~l~~~~~~-~~~~~lv~  227 (446)
T 4ejn_A          152 YLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRH---PFLTALKYSFQT-HDRLCFVM  227 (446)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSC---TTSCCEEEEEEE-TTEEEEEE
T ss_pred             EeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCC---CeEeeEEEEEee-CCEEEEEE
Confidence            3567888988999998863 33 788897642      111233455555444431   234555544433 56789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|..+
T Consensus       228 e~~~~~~L  235 (446)
T 4ejn_A          228 EYANGGEL  235 (446)
T ss_dssp             CCCSSCBH
T ss_pred             eeCCCCcH
Confidence            99998643

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=97.75  E-value=4e-05  Score=68.25  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=46.6

Q ss_pred             eeeeCCccccceEEEEe--CCc---cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGT--DAG---SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~--~~g---~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.+|.|..+.||+...  .++   .+.+|......    ...+..|..+++.|. +  -.+.+++.......+..+++|
T Consensus        94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~-h--pnIv~~~~~~~~~~~~~~lv~  170 (373)
T 3c1x_A           94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFS-H--PNVLSLLGICLRSEGSPLVVL  170 (373)
T ss_dssp             EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCC-C--TTBCCCCEEECCCSSCCEEEE
T ss_pred             CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCC-C--CCcceEEEEEEcCCCCeEEEE
Confidence            36789898899999874  233   46778765321    133456666665553 2  234455544322146789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|.++
T Consensus       171 e~~~~g~L  178 (373)
T 3c1x_A          171 PYMKHGDL  178 (373)
T ss_dssp             ECCTTCBH
T ss_pred             ECCCCCCH
Confidence            99998743

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.75  E-value=0.00024  Score=60.47  Aligned_cols=74  Identities=14%  Similarity=-0.044  Sum_probs=49.9

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ...+|.|..+.||++... ++ .+++|.....   ....+..|..+++.+..   -.+++++..... .+..+++||+++
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~lv~e~~~  102 (295)
T 2clq_A           27 RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKH---KNIVQYLGSFSE-NGFIKIFMEQVP  102 (295)
T ss_dssp             BCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCC---TTBCCEEEEEEE-TTEEEEEEECCS
T ss_pred             cEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCC---CCEeeEeeEEEe-CCcEEEEEEeCC
Confidence            346888888999999863 34 7888876542   23456778887777742   235556654433 568899999998


Q ss_pred             CCC
Q 022304          102 FGS  104 (299)
Q Consensus       102 G~~  104 (299)
                      |..
T Consensus       103 ~~~  105 (295)
T 2clq_A          103 GGS  105 (295)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            863

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=97.74  E-value=0.00014  Score=66.45  Aligned_cols=74  Identities=9%  Similarity=-0.001  Sum_probs=41.8

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC----CCceE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP----TGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~----~~~~~   94 (299)
                      -++.+|.|..+.||++... .+ .|.+|......     ...+.+|+.+++.|. +  -.+.+++......    ....|
T Consensus        57 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~~~~~~~~~~  133 (458)
T 3rp9_A           57 IRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLN-H--DHVVKVLDIVIPKDVEKFDELY  133 (458)
T ss_dssp             ECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCC-C--TTBCCEEEECCCSCTTTCCCEE
T ss_pred             EeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCC-C--CCCCceEEEEecCCcccCceEE
Confidence            3567888988999999753 33 78888764321     234668998888884 2  2455566543211    25679


Q ss_pred             EEEecccC
Q 022304           95 IIMEFIEF  102 (299)
Q Consensus        95 ~v~e~l~G  102 (299)
                      ++||+.+|
T Consensus       134 lv~e~~~~  141 (458)
T 3rp9_A          134 VVLEIADS  141 (458)
T ss_dssp             EEECCCSE
T ss_pred             EEEecccc
Confidence            99998765

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=97.74  E-value=6.2e-05  Score=69.30  Aligned_cols=74  Identities=15%  Similarity=0.050  Sum_probs=52.4

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.+|.|..+.||++... .+ .+++|+....      ....+.+|+.+++.|. +  -.+++++..... .+..+++||
T Consensus        31 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--pniv~~~~~~~~-~~~~~lv~e  106 (484)
T 3nyv_A           31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD-H--PNIMKLYEFFED-KGYFYLVGE  106 (484)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCC-C--TTBCCEEEEEEC-SSEEEEEEC
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEe-CCEEEEEEe
Confidence            567888988999999874 33 7889986421      2345678888887774 2  345666665443 568899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      ++.|..
T Consensus       107 ~~~~~~  112 (484)
T 3nyv_A          107 VYTGGE  112 (484)
T ss_dssp             CCCSCB
T ss_pred             cCCCCC
Confidence            999864

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=97.74  E-value=7.8e-05  Score=68.43  Aligned_cols=74  Identities=12%  Similarity=0.116  Sum_probs=48.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCceE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~~   94 (299)
                      ++.+|.|..+.||++... .+ .+.+|+....     ....+.+|+.+++.+..   -.+.+++......     ....+
T Consensus        67 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~l~~~~~~~~~~~~~~~~~  143 (464)
T 3ttj_A           67 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNH---KNIISLLNVFTPQKTLEEFQDVY  143 (464)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCC---TTBCCCSEEECSCCSTTTCCEEE
T ss_pred             EEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCC---CCCCcEEEEEccCCccccCCeEE
Confidence            577898988999998753 33 7888877532     12345678888877743   2344555432211     24579


Q ss_pred             EEEecccCC
Q 022304           95 IIMEFIEFG  103 (299)
Q Consensus        95 ~v~e~l~G~  103 (299)
                      ++||+++|.
T Consensus       144 lv~E~~~~~  152 (464)
T 3ttj_A          144 LVMELMDAN  152 (464)
T ss_dssp             EEEECCSEE
T ss_pred             EEEeCCCCC
Confidence            999999874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=97.71  E-value=0.00017  Score=62.57  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=44.6

Q ss_pred             ceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCc----chHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           23 HITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGP----SMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~----~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      ...-++.+|.|..+.||++... +| .+++|+......    ..+..|...  .++...--.+++++..... .+..+++
T Consensus        23 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~--~~~~~~h~niv~~~~~~~~-~~~~~lv   99 (327)
T 3aln_A           23 DLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDV--VMRSSDCPYIVQFYGALFR-EGDCWIC   99 (327)
T ss_dssp             SEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHH--HHSSCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred             HhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHH--HHHcCCCCcEeeeeeEEEe-CCceEEE
Confidence            3444677888888999998874 34 789998764321    112222221  2221111235555554433 5688999


Q ss_pred             EecccC
Q 022304           97 MEFIEF  102 (299)
Q Consensus        97 ~e~l~G  102 (299)
                      ||+++|
T Consensus       100 ~e~~~~  105 (327)
T 3aln_A          100 MELMST  105 (327)
T ss_dssp             ECCCSE
T ss_pred             EeecCC
Confidence            999987

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=97.70  E-value=0.00022  Score=63.25  Aligned_cols=75  Identities=17%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccCC-----Cc
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT-----GG   92 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~-----~~   92 (299)
                      .-.+.+|.|..+.||++... .| .+++|+.....     ...+.+|+.+++.+..   -.+++++.......     ..
T Consensus        45 ~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~~~~~~~~~~  121 (371)
T 4exu_A           45 VSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQH---ENVIGLLDVFTPASSLRNFYD  121 (371)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCC---TTBCCCSEEECSCSSSTTCCC
T ss_pred             EEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCC---CCchhhhhheeccCCccccee
Confidence            34577898988999999764 34 78899876421     2345678887777752   23455554432211     12


Q ss_pred             eEEEEecccC
Q 022304           93 SYIIMEFIEF  102 (299)
Q Consensus        93 ~~~v~e~l~G  102 (299)
                      .+++|++++|
T Consensus       122 ~~lv~e~~~~  131 (371)
T 4exu_A          122 FYLVMPFMQT  131 (371)
T ss_dssp             CEEEEECCCE
T ss_pred             EEEEEccccc
Confidence            4999999986

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=97.68  E-value=0.0001  Score=65.99  Aligned_cols=73  Identities=7%  Similarity=-0.095  Sum_probs=46.3

Q ss_pred             eeeeCCccccceEEEEeCC-ccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTDA-GSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~-g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~~~v~e~l  100 (299)
                      ++.+|.|..+.||++.... +.+++|...... ....+|..+++.|..   -.+.+++.+....     ....+++||++
T Consensus        45 ~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~-~~~~~E~~il~~l~h---~niv~l~~~~~~~~~~~~~~~~~lv~e~~  120 (394)
T 4e7w_A           45 CKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK-RFKNRELQIMRIVKH---PNVVDLKAFFYSNGDKKDEVFLNLVLEYV  120 (394)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEEECCT-TSCCHHHHHHHTCCC---TTBCCEEEEEEEESSSSSCEEEEEEEECC
T ss_pred             eEEEeeCCCeEEEEEEECCCCeEEEEEEecCc-chHHHHHHHHHhCCC---CCcceEEEEEEecCCCCCceEEEEEeecc
Confidence            5678888889999998744 467776554322 223478888888753   2345555432110     12367999999


Q ss_pred             cCC
Q 022304          101 EFG  103 (299)
Q Consensus       101 ~G~  103 (299)
                      +|.
T Consensus       121 ~~~  123 (394)
T 4e7w_A          121 PET  123 (394)
T ss_dssp             SEE
T ss_pred             Ccc
Confidence            874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.68  E-value=6.2e-05  Score=72.46  Aligned_cols=76  Identities=18%  Similarity=0.124  Sum_probs=49.5

Q ss_pred             eeeeCCccccceEEEEeC--Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCC--C--ceEE
Q 022304           27 ICPVGGGCINLASRYGTD--AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPT--G--GSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~--~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~--~--~~~~   95 (299)
                      ...+|.|..+.||++...  ++ .+++|+.....    ...+..|..++..|..   -.+++++.+.....  +  ..|+
T Consensus        85 ~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~~~~~~~~~~~l  161 (681)
T 2pzi_A           85 KGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVH---PSIVQIFNFVEHTDRHGDPVGYI  161 (681)
T ss_dssp             EEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCC---TTBCCEEEEEEEECTTSCEEEEE
T ss_pred             EEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCC---CCcCeEeeeEeecCCCCCceeEE
Confidence            466888888999999763  34 78899775321    1335567776666642   24666666543311  1  1599


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|..+
T Consensus       162 v~E~~~g~~L  171 (681)
T 2pzi_A          162 VMEYVGGQSL  171 (681)
T ss_dssp             EEECCCCEEC
T ss_pred             EEEeCCCCcH
Confidence            9999999766

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=97.67  E-value=8.5e-05  Score=70.91  Aligned_cols=71  Identities=15%  Similarity=0.107  Sum_probs=49.9

Q ss_pred             eeCCccccceEEEEe--C-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           29 PVGGGCINLASRYGT--D-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~--~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      .+|.|..+.||+...  . .+ .+.+|+....     ....+..|+.++..|..   -.+.+++.+..  .+..+++||+
T Consensus       376 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~h---pnIv~l~~~~~--~~~~~lv~E~  450 (635)
T 4fl3_A          376 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDN---PYIVRMIGICE--AESWMLVMEM  450 (635)
T ss_dssp             EEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCC---TTBCCEEEEEE--SSSEEEEEEC
T ss_pred             EeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCC---CCEeeEEEEEe--cCCEEEEEEc
Confidence            588898899999743  2 22 6888987642     12457789999988852   34566676554  3567899999


Q ss_pred             ccCCC
Q 022304          100 IEFGS  104 (299)
Q Consensus       100 l~G~~  104 (299)
                      ++|..
T Consensus       451 ~~~g~  455 (635)
T 4fl3_A          451 AELGP  455 (635)
T ss_dssp             CTTEE
T ss_pred             cCCCC
Confidence            99873

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=97.66  E-value=0.0002  Score=64.77  Aligned_cols=75  Identities=13%  Similarity=0.006  Sum_probs=50.9

Q ss_pred             eeeeeCCccccceEEEEeCC--ccEEEEecCCC-----------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           26 KICPVGGGCINLASRYGTDA--GSFFVKTNRSI-----------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~--g~~vlK~~~~~-----------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      -.+.+|.|..+.||++....  ..+.+|+....           ....+..|+.+++.|..   -.+.+++....  .+.
T Consensus       139 ~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---pniv~l~~~~~--~~~  213 (419)
T 3i6u_A          139 MSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNH---PCIIKIKNFFD--AED  213 (419)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCC---TTBCCCCEEEE--SSE
T ss_pred             EEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCC---CCEeeEEEEEe--cCc
Confidence            34678888889999987643  37888875321           12347789999988843   23455555433  356


Q ss_pred             eEEEEecccCCCC
Q 022304           93 SYIIMEFIEFGSS  105 (299)
Q Consensus        93 ~~~v~e~l~G~~~  105 (299)
                      .+++||+++|..+
T Consensus       214 ~~lv~e~~~~g~L  226 (419)
T 3i6u_A          214 YYIVLELMEGGEL  226 (419)
T ss_dssp             EEEEEECCTTCBG
T ss_pred             eEEEEEcCCCCcH
Confidence            7999999998754

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=97.64  E-value=0.00032  Score=60.34  Aligned_cols=75  Identities=15%  Similarity=0.036  Sum_probs=37.5

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCc-ch-HHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGP-SM-FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~-~~-~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .-++.++.|..+.||++... +| .+++|+...... .. .+...+....+.....-.+++++..... .+..+++||++
T Consensus        28 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lv~e~~  106 (318)
T 2dyl_A           28 ENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFIT-NTDVFIAMELM  106 (318)
T ss_dssp             EEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEEEEECCC
T ss_pred             cccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEec-CCcEEEEEecc
Confidence            34577888888999999874 33 789998764321 11 1111111112222111245566655433 56789999998

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=97.63  E-value=0.00031  Score=62.28  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=48.0

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCce
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~   93 (299)
                      -++.+|.|..+.||++... .+ .+++|+.....     ...+.+|+.+++.+..   -.+.+++......     ....
T Consensus        29 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---pniv~~~~~~~~~~~~~~~~~~  105 (371)
T 2xrw_A           29 NLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNH---KNIIGLLNVFTPQKSLEEFQDV  105 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCC---TTBCCEEEEECSCCSTTTCCEE
T ss_pred             EeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCC---CCccceEEeeccccccccccce
Confidence            3577888888999998763 33 78889875321     1335678887777742   2345555443221     1367


Q ss_pred             EEEEecccC
Q 022304           94 YIIMEFIEF  102 (299)
Q Consensus        94 ~~v~e~l~G  102 (299)
                      +++||+++|
T Consensus       106 ~lv~e~~~~  114 (371)
T 2xrw_A          106 YIVMELMDA  114 (371)
T ss_dssp             EEEEECCSE
T ss_pred             EEEEEcCCC
Confidence            999999987

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=97.63  E-value=0.00016  Score=65.44  Aligned_cols=72  Identities=8%  Similarity=-0.046  Sum_probs=45.8

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecc--cC-C--CceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGA--LP-T--GGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~--~~-~--~~~~~v~e~   99 (299)
                      .+.+|.|....||++... .| .+.+|...... ....+|+.+++.|..   -.+.+++....  .. .  ...+++|||
T Consensus        59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~E~~il~~l~h---pniv~l~~~~~~~~~~~~~~~~~lv~e~  134 (420)
T 1j1b_A           59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-RFKNRELQIMRKLDH---CNIVRLRYFFYSSGEKKDEVYLNLVLDY  134 (420)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEECCT-TSCCHHHHHHHTCCC---TTBCCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEecccc-hhHHHHHHHHHHcCC---CCccceeeEEeccCCCCcceeEEeehhc
Confidence            466888888999999874 23 78888765432 234578988887753   23444443221  11 1  235689999


Q ss_pred             ccC
Q 022304          100 IEF  102 (299)
Q Consensus       100 l~G  102 (299)
                      ++|
T Consensus       135 ~~~  137 (420)
T 1j1b_A          135 VPE  137 (420)
T ss_dssp             CCE
T ss_pred             ccc
Confidence            987

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=97.60  E-value=9e-05  Score=70.46  Aligned_cols=72  Identities=14%  Similarity=0.035  Sum_probs=49.8

Q ss_pred             eeCCccccceEEEEeC---Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGTD---AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~---~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+|.|....||+....   ++ .+.+|+....    ....+.+|+.+++.|. +  -.+.+++....  .+..+++||++
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~-h--pniv~l~~~~~--~~~~~lv~E~~  417 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD-N--PYIVRLIGVCQ--AEALMLVMEMA  417 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCC-C--TTBCCEEEEEE--SSSEEEEEECC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCC-C--CCEeeEEEEec--cCCeEEEEEeC
Confidence            5888888999987542   23 5888987642    2345678888887774 2  34566666544  35689999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|..+
T Consensus       418 ~~g~L  422 (613)
T 2ozo_A          418 GGGPL  422 (613)
T ss_dssp             TTCBH
T ss_pred             CCCcH
Confidence            99743

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=97.58  E-value=0.00035  Score=66.95  Aligned_cols=74  Identities=19%  Similarity=0.132  Sum_probs=49.7

Q ss_pred             eeeeCCccccceEEEEeCC----c-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTDA----G-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~----g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.+|.|..+.||+.....    + .+.+|......    ...+..|+.+++.+..   -.+++++....  .+..+++|
T Consensus       395 ~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~H---pnIv~l~~~~~--~~~~~lv~  469 (656)
T 2j0j_A          395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDH---PHIVKLIGVIT--ENPVWIIM  469 (656)
T ss_dssp             EEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCC---TTBCCEEEEEC--SSSCEEEE
T ss_pred             eeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCC---CCCCeEEEEEe--cCceEEEE
Confidence            4668989889999987532    1 47778765422    2446678887777742   24566665543  46789999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      |+++|..+
T Consensus       470 E~~~~g~L  477 (656)
T 2j0j_A          470 ELCTLGEL  477 (656)
T ss_dssp             ECCTTCBH
T ss_pred             EcCCCCcH
Confidence            99998643

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=97.55  E-value=0.00023  Score=62.21  Aligned_cols=72  Identities=15%  Similarity=-0.093  Sum_probs=43.8

Q ss_pred             eeCCccccceEEEEeC--CccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEEEEecccCC
Q 022304           29 PVGGGCINLASRYGTD--AGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYIIMEFIEFG  103 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~~--~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~v~e~l~G~  103 (299)
                      .+|.|..+.||++...  +..+++|+....  .....|...+..+..+  ..+++++......   ....+++||+++|.
T Consensus        36 ~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~e~~~~~~~~~h--~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg  111 (336)
T 3fhr_A           36 VLGLGVNGKVLECFHRRTGQKCALKLLYDS--PKARQEVDHHWQASGG--PHIVCILDVYENMHHGKRCLLIIMECMEGG  111 (336)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEESS--HHHHHHHHHHHHHTTS--TTBCCEEEEEEEEETTEEEEEEEEECCTTE
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEecCc--HHHHHHHHHHHHhcCC--CChHHHHHHHhhccCCCceEEEEEeccCCC
Confidence            4788888999999875  338899987542  2233444333222222  3456666543221   23478999999986


Q ss_pred             C
Q 022304          104 S  104 (299)
Q Consensus       104 ~  104 (299)
                      +
T Consensus       112 ~  112 (336)
T 3fhr_A          112 E  112 (336)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=97.54  E-value=0.00021  Score=62.61  Aligned_cols=76  Identities=13%  Similarity=0.015  Sum_probs=41.1

Q ss_pred             eeeeeCCccccceEEEEeCC-----ccEEEEecCCCCcchHHHHHHHHHHHH------------hcCCCCCccceeeccc
Q 022304           26 KICPVGGGCINLASRYGTDA-----GSFFVKTNRSIGPSMFEGEALGLGAMY------------ETRTIRAPRPFKVGAL   88 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-----g~~vlK~~~~~~~~~~~~E~~~l~~L~------------~~~~~~vP~~~~~~~~   88 (299)
                      -.+.++.|..+.||++....     ..+++|...... .....|..+++.+.            ...-..+++++.....
T Consensus        41 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~-~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~  119 (345)
T 2v62_A           41 LGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQEN-GPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLT  119 (345)
T ss_dssp             EEEEC------CEEEEEESSSCGGGCCEEEEEEECC--CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEE
T ss_pred             EEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCC-cchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccc
Confidence            35778989889999998743     278899876532 22344555444432            1111245666654332


Q ss_pred             C---CCceEEEEecccCC
Q 022304           89 P---TGGSYIIMEFIEFG  103 (299)
Q Consensus        89 ~---~~~~~~v~e~l~G~  103 (299)
                      .   ....+++||++ |.
T Consensus       120 ~~~~~~~~~lv~e~~-~~  136 (345)
T 2v62_A          120 EFKGRSYRFMVMERL-GI  136 (345)
T ss_dssp             ESSSCEEEEEEEECE-EE
T ss_pred             ccCCCcEEEEEEecc-CC
Confidence            1   35789999999 65

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=97.50  E-value=0.00034  Score=62.06  Aligned_cols=75  Identities=16%  Similarity=0.071  Sum_probs=44.1

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCc
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGG   92 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~   92 (299)
                      .-++.+|.|..+.||++... .| .+++|......     ...+.+|+.+++.|..   -.+.+++......     ...
T Consensus        32 ~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---pnIv~~~~~~~~~~~~~~~~~  108 (367)
T 2fst_X           32 QNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH---ENVIGLLDVFTPARSLEEFND  108 (367)
T ss_dssp             EEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCC---TTBCCCSEEECSCSSGGGCCC
T ss_pred             EEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCC---CCCCcEEEEEecCCccccCCe
Confidence            34678899988999999753 34 78899875421     2345678888887753   2344454432210     245


Q ss_pred             eEEEEecccC
Q 022304           93 SYIIMEFIEF  102 (299)
Q Consensus        93 ~~~v~e~l~G  102 (299)
                      .++++++..+
T Consensus       109 ~~lv~e~~~~  118 (367)
T 2fst_X          109 VYLVTHLMGA  118 (367)
T ss_dssp             CEEEEECCCE
T ss_pred             EEEEecccCC
Confidence            7899998843

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=97.50  E-value=0.00024  Score=62.70  Aligned_cols=77  Identities=10%  Similarity=-0.043  Sum_probs=50.5

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcC--------CCCCccceeecccC--
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETR--------TIRAPRPFKVGALP--   89 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~--------~~~vP~~~~~~~~~--   89 (299)
                      -.-++.++.|..+.||++... ++ .+++|+....  ....+..|..+++.+....        .-.+++++......  
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~  100 (373)
T 1q8y_A           21 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP  100 (373)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred             EEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCC
Confidence            334677888888999999863 33 7899988643  2345678999999887431        01345555443221  


Q ss_pred             -CCceEEEEecc
Q 022304           90 -TGGSYIIMEFI  100 (299)
Q Consensus        90 -~~~~~~v~e~l  100 (299)
                       ....+++|+++
T Consensus       101 ~~~~~~lv~e~~  112 (373)
T 1q8y_A          101 NGVHVVMVFEVL  112 (373)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CCceEEEEEecC
Confidence             12678999998

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=97.50  E-value=6.9e-05  Score=64.70  Aligned_cols=76  Identities=9%  Similarity=-0.057  Sum_probs=50.4

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ..-.+.++.|..+.||+.... +.+++|.....     ....+..|+..++.+..   -.+++++..... .+..+++||
T Consensus        35 ~~~~~~lg~G~~g~V~~~~~~-~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~-~~~~~iv~e  109 (319)
T 2y4i_B           35 LEIGELIGKGRFGQVYHGRWH-GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRH---ENVVLFMGACMS-PPHLAIITS  109 (319)
T ss_dssp             EECCCBCCCSSSSEEEEEEES-SSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCC---TTBCCCCEEEEC-SSCEEEECB
T ss_pred             eEEeeEeccCCceEEEEEEEc-CeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCC---CCEeEEEEEEec-CCceEEEee
Confidence            344577888888999998765 46888876531     22445677776666632   234555555433 467899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      +++|..
T Consensus       110 ~~~~~~  115 (319)
T 2y4i_B          110 LCKGRT  115 (319)
T ss_dssp             CCCSEE
T ss_pred             cccCCc
Confidence            999863

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=97.47  E-value=0.00041  Score=60.89  Aligned_cols=76  Identities=17%  Similarity=0.061  Sum_probs=48.6

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CC
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TG   91 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~   91 (299)
                      -...+.+|.|..+.||++... .| .+++|......     ...+.+|..+++.+..   -.+.+++......     ..
T Consensus        26 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           26 YVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQH---ENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCC---TTBCCCSEEECSCSSGGGCC
T ss_pred             EEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCC---CCcccHhheEecccccccce
Confidence            334577888888999999864 34 78999875421     1345678888877742   2344455433221     12


Q ss_pred             ceEEEEecccC
Q 022304           92 GSYIIMEFIEF  102 (299)
Q Consensus        92 ~~~~v~e~l~G  102 (299)
                      ..+++|++++|
T Consensus       103 ~~~lv~e~~~~  113 (353)
T 3coi_A          103 DFYLVMPFMQT  113 (353)
T ss_dssp             CCEEEEECCSE
T ss_pred             eEEEEeccccC
Confidence            35999999986

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=97.45  E-value=0.0017  Score=55.68  Aligned_cols=79  Identities=14%  Similarity=0.113  Sum_probs=46.5

Q ss_pred             CcceeeeeeeCCccccceEEEEeCC-c-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecc--------
Q 022304           21 ATHITKICPVGGGCINLASRYGTDA-G-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGA--------   87 (299)
Q Consensus        21 ~~~~~~~~~~~~G~~n~~y~v~~~~-g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~--------   87 (299)
                      +..-.-++.++.|..+.||++.... + .+++|......   ...+.+|..+++.|..   -.+.+++....        
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~~~~~~~~   86 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDH---DNIVKVFEILGPSGSQLTD   86 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCC---TTBCCEEEEECTTSCBCCC
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCC---CCeeEEEEecccccccccc
Confidence            3345567889999889999998753 3 78899765432   2345678877777742   23444443311        


Q ss_pred             -----cCCCceEEEEecccC
Q 022304           88 -----LPTGGSYIIMEFIEF  102 (299)
Q Consensus        88 -----~~~~~~~~v~e~l~G  102 (299)
                           ......+++||+++|
T Consensus        87 ~~~~~~~~~~~~lv~e~~~~  106 (320)
T 2i6l_A           87 DVGSLTELNSVYIVQEYMET  106 (320)
T ss_dssp             ----CCSCSEEEEEEECCSE
T ss_pred             ccccccccCceeEEeeccCC
Confidence                 013567999999986

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=97.31  E-value=0.00029  Score=67.38  Aligned_cols=76  Identities=16%  Similarity=0.076  Sum_probs=50.2

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeeccc----C-CCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGAL----P-TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~----~-~~~~~~   95 (299)
                      .+.+|.|..+.||++... +| .+++|+.....    ...+..|+.+++.|..   -.+.+++.....    . .+..++
T Consensus        19 ~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~H---pnIV~l~~v~~~~~~~~~~~~~~L   95 (676)
T 3qa8_A           19 KERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNH---PNVVSAREVPDGLQKLAPNDLPLL   95 (676)
T ss_dssp             CCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCB---TTBCCEEECCTTTCCCCTTSSCCC
T ss_pred             EEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCC---CCCCceeeeecccccccCCCeEEE
Confidence            467888888999998753 33 78999876421    2446678988888853   233444443221    1 357799


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|.++
T Consensus        96 VmEy~~ggsL  105 (676)
T 3qa8_A           96 AMEYCEGGDL  105 (676)
T ss_dssp             EEECCSSCBH
T ss_pred             EEEeCCCCCH
Confidence            9999998743

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.26  E-value=0.0011  Score=59.61  Aligned_cols=47  Identities=17%  Similarity=0.050  Sum_probs=33.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC------CcchHHHHHHHHHHHH
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI------GPSMFEGEALGLGAMY   72 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~------~~~~~~~E~~~l~~L~   72 (299)
                      ..+.+|.|..+.||++... .| .+.||+....      ....+++|...++.|.
T Consensus        82 ~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~  136 (413)
T 3dzo_A           82 RGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLR  136 (413)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGST
T ss_pred             EecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhc
Confidence            3466888989999999853 34 8899987631      1345677887776664

>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3

Probab=86.50  E-value=4.1  Score=35.09  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccce--eeccc-------------
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPF--KVGAL-------------   88 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~--~~~~~-------------   88 (299)
                      +..++...+| +..+|.+.++++.||||-.+     .+..|.-.. .|+...++|+|..-  ..+..             
T Consensus        71 v~~I~~s~~G-stgvff~~td~~~~VVK~s~-----~l~~E~l~s-~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~  143 (342)
T 1cja_A           71 FKGIERSEKG-TEGLFFVETESGVFIVKRST-----NIESETFCS-LLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAID  143 (342)
T ss_dssp             EEEEEECCST-TSCEEEEEESSCEEEEECCT-----THHHHHHHH-HHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHC
T ss_pred             eeEEEeccCC-CCCeEEEEeCCCEEEEeCcH-----HHHHHHHHH-HHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhh
Confidence            4455666666 46788888887899999442     345565433 45555588998733  22200             


Q ss_pred             C---------CCceEEEEecccCCCC
Q 022304           89 P---------TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        89 ~---------~~~~~~v~e~l~G~~~  105 (299)
                      .         ++..+++|+|++|.++
T Consensus       144 ~~~~~l~~l~~~~~~l~meyv~G~~L  169 (342)
T 1cja_A          144 KSFRVITTLANQANILLMELVRGITL  169 (342)
T ss_dssp             SSSCHHHHHTTCSEEEEEECCCEEES
T ss_pred             hhhHHHHHhhcccceehhhhcCCCcc
Confidence            0         2356799999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d2pula1	392	d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {	3e-10
d1nd4a_	255	d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferas	8e-10
d1j7la_	263	d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phos	2e-06
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	0.001

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} Length = 392

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 36/274 (13%), Positives = 67/274 (24%), Gaps = 41/274 (14%)

Query: 29  PVGGGCINLASRYGTDAG--SFFVK----TNRSIGPSMF------EGEALGLGAMYETRT 76
            +G G +N            +  +K      + +G S          E+  L    E   
Sbjct: 33  EIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVP 92

Query: 77  IRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQ---------------SVFGKKLAEMHK 121
              PR F         +  +ME +                           GK L     
Sbjct: 93  HLVPRVFYSDT---EMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSD 149

Query: 122 AGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHR 181
                K     V                + + + +H      +                 
Sbjct: 150 YALEPKVKKQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKI 209

Query: 182 LMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGF 241
               L   F        L+HGDL +G+I + ++   VI     +YG    + G      F
Sbjct: 210 EAAKLKKSFL--TSAETLIHGDLHTGSIFASEHETKVIDPEFAFYGPIGFDVGQ-----F 262

Query: 242 GGSFYNSYFEVMPKQPGFEKRRDLYMLYHYLNHY 275
             + + +       + G ++      +      +
Sbjct: 263 IANLFLNALS----RDGADREPLYEHVNQVWETF 292

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

 Score = 55.8 bits (133), Expect = 8e-10
 Identities = 33/253 (13%), Positives = 64/253 (25%), Gaps = 32/253 (12%)

Query: 29  PVGGGCINLAS-RYGTDAGS-FFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVG 86
               GC + A  R         FVKT+ S   +  + EA  L  +  T  +       V 
Sbjct: 17  QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTG-VPCAAVLDVV 75

Query: 87  ALPTGGSYIIMEFIEFGSSRGNQ-------SVFGKKLAEMHKAGKSSKGFGFDVDNTIGS 139
                  ++++  +       +        S+    +  +H    ++  F     + I  
Sbjct: 76  TEAGRD-WLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIER 134

Query: 140 TPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCL 199
                +      +   E   G                    RL   +    +       +
Sbjct: 135 ARTRMEAGLVDQDDLDEEHQGLAPAELFA------------RLKARMPDGED-----LVV 177

Query: 200 LHGDLWSGNISSDKNGEPVILD-PACYYGHNEAEFG---MSWCAGFGGSFYNSYFEVMPK 255
            HGD    NI  +       +D           +            GG + + +  +   
Sbjct: 178 THGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGI 237

Query: 256 QPGFEKRRDLYML 268
                +R   Y L
Sbjct: 238 AAPDSQRIAFYRL 250

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 23/221 (10%), Positives = 54/221 (24%), Gaps = 33/221 (14%)

Query: 31  GGGCINLASRYGTDAGSFFVKTNRSIGPS---MFEGEALGLGAMYETRTIRAPRPFKVGA 87
            G       +   +  + ++K   S         E E   +  +     +  P+      
Sbjct: 23  EGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGK--LPVPKVLHFER 80

Query: 88  LPTGGSYIIMEFIEFGSSRGNQ----------SVFGKKLAEMHKAGKSSKGFGFDVDNTI 137
              G S ++M   +                   ++ + +   H    S   +   +D+ +
Sbjct: 81  -HDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRL 139

Query: 138 GSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEP 197
                        +++   + L        ++       +  +  +K   P       E 
Sbjct: 140 A-----------ELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKP-----EEEL 183

Query: 198 CLLHGDLWSGNISSDKNGEPVILD-PACYYGHNEAEFGMSW 237
              HGDL   NI          +D           +     
Sbjct: 184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCV 224

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 131 FDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLF 190
            ++  T  S     K +   +  + EH L   L   L ++  S I +    L+  L  + 
Sbjct: 75  IEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH 134

Query: 191 EGVNVEPCLLHGDLWSGNISSDKNGEPVILD--PACYYGHNEAEFGMSWCAGFGGSFYNS 248
                   +LH D+ + N+   ++G   + D   A  +   +     +       + +  
Sbjct: 135 R-----NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ-PNRYTNRVVTLWYR 188

Query: 249 YFEVMPKQPGFEKRRDLY----MLYHYLNHYNLFGSGYRSSALSIIDDYL 294
             E++  +  +    DL+    ++        +         L++I    
Sbjct: 189 PPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLC 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	99.96
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	99.96
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	99.94
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	99.91
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	99.88
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	99.8
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.91
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	98.72
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	98.68
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	98.65
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	98.65
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.58
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	98.56
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	98.55
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.55
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.51
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	98.5
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	98.5
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	98.47
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	98.45
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	98.42
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	98.42
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	98.39
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	98.39
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	98.39
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.39
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	98.38
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	98.37
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	98.37
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	98.37
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.35
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	98.33
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	98.31
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	98.31
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	98.3
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	98.29
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	98.29
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	98.28
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.27
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.26
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	98.26
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	98.21
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	98.21
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	98.2
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	98.13
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	98.12
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	98.1
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.1
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	98.08
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	98.08
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	98.08
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	98.06
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	98.06
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	98.05
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	98.05
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	98.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	97.99
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	97.98
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	97.96
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	97.95
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	97.92
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.92
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	97.9
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	97.88
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	97.86
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	97.82
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	97.77
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	96.98
d1cjaa_	342	Actin-fragmin kinase, catalytic domain {Physarum p	93.83

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.96  E-value=1.8e-28  Score=213.79  Aligned_cols=242  Identities=14%  Similarity=0.154  Sum_probs=170.7

Q ss_pred             cCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccce
Q 022304            5 ALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPF   83 (299)
Q Consensus         5 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~   83 (299)
                      .++.++|..+|+.+++| ++.+++++.+|..|.+|+|+|++|+||||++... ....+..|.+++.+|++. ++|||.|+
T Consensus         2 ~ls~~el~~~l~~Y~lg-~~~~~~~i~~G~~N~ny~v~t~~g~yVLri~~~~~~~~~l~~~~~~l~~L~~~-g~pvp~pi   79 (316)
T d2ppqa1           2 DITEDELRNFLTQYDVG-SLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKNDLPFFLGLMQHLAAK-GLSCPLPL   79 (316)
T ss_dssp             CCCHHHHHHHHTTBCCC-CEEEEEEECC---EEEEEEEESSCCEEEEEECC---CCHHHHHHHHHHHHHHT-TCCCCCBC
T ss_pred             CCCHHHHHHHHHhCCCC-CceEeecCCCCcccCeEEEEECCCcEEEEEcCCCCCHHHHHHHHHHHHhhhhc-cccccccc
Confidence            57899999999888777 8999999999999999999999999999998753 456788999999999987 79999999


Q ss_pred             eecccC-----CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHH
Q 022304           84 KVGALP-----TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFY  154 (299)
Q Consensus        84 ~~~~~~-----~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (299)
                      ......     .+..+.++.++.|....    .....+|..++++|.....   +..+.+         ..+...|....
T Consensus        80 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~  147 (316)
T d2ppqa1          80 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEG---FEIKRP---------NALSVDGWKVL  147 (316)
T ss_dssp             CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTT---CCCCCB---------CTTSHHHHHHH
T ss_pred             eecCCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhh---cccccc---------cccchhhcchh
Confidence            765442     57889999999997652    4578999999999999864   222111         11111111111


Q ss_pred             HHhhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-ccccCCchhhh
Q 022304          155 AEHRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-ACYYGHNEAEF  233 (299)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~~~g~~~~Dl  233 (299)
                      .     ...... ...........+....+.+...... ..+.++||||++++||++++++..+|||| ++++|++++|+
T Consensus       148 ~-----~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~-~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~~~~~~DL  220 (316)
T d2ppqa1         148 W-----DKSEER-ADEVEKGLREEIRPEIDYLAAHWPK-DLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDLLAYDV  220 (316)
T ss_dssp             H-----HHHGGG-GGGTSTTHHHHHHHHHHHHHHHCCC-SSCEEEECSCCCGGGEEEETTEEEEECCCTTCEEEEHHHHH
T ss_pred             h-----hHHHHh-hhhcchhHHHHHHHHHHhhhccCcc-ccccccccCCcchhhhhcccccceeEecccccccchhhhhH
Confidence            0     000000 0111222334444445544443333 46889999999999999998876799999 58999999999


Q ss_pred             hhh---hh----cCCC----hhhHHHhhhhCCCCCCHHHHHHHHH
Q 022304          234 GMS---WC----AGFG----GSFYNSYFEVMPKQPGFEKRRDLYM  267 (299)
Q Consensus       234 a~~---~~----~~~~----~~f~~~Y~~~~~l~~~~~~r~~~~~  267 (299)
                      |++   ++    ..++    .+|++||.+++|++++..+-+..+.
T Consensus       221 Ai~~~~~~~~~~~~~~~~~~~afl~GY~~~rpLs~~E~~~l~~~~  265 (316)
T d2ppqa1         221 SICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLSEAELEALPLLS  265 (316)
T ss_dssp             HHHHHHHSBCTTSCBCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            975   22    1222    3799999999999976555555543

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.5e-29  Score=217.62  Aligned_cols=246  Identities=16%  Similarity=0.162  Sum_probs=169.7

Q ss_pred             ccccCCcchHHHHHHhcCCCcceeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCC
Q 022304            2 TVAALSDDPIREWILSEGKATHITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIR   78 (299)
Q Consensus         2 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~   78 (299)
                      +...++++.|.+-+...|+..+ ..+.+++ |+.|.||+|++++| +||+|++++.  +...+..|++++.+|++. ++|
T Consensus         4 ~f~~L~pd~i~~al~~~g~~~~-~~~~~L~-s~EN~vy~v~~~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~-gip   80 (325)
T d1zyla1           4 TFQTLHPDTIMDALFEHGIRVD-SGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVND-EVP   80 (325)
T ss_dssp             CCCCCCHHHHHHHHHHTTCCCC-SCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHT-TCS
T ss_pred             CccccCHHHHHHHHHHcCCCCC-cCccccc-cccceeEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhc-CCC
Confidence            3467899999999988865322 3456674 78999999999887 7999999863  456688999999999987 699


Q ss_pred             CccceeecccC----CCceEEEEecccCCCCC----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCH
Q 022304           79 APRPFKVGALP----TGGSYIIMEFIEFGSSR----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNW  150 (299)
Q Consensus        79 vP~~~~~~~~~----~~~~~~v~e~l~G~~~~----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  150 (299)
                      ||.|+..+...    .+..+.+++|++|..+.    ...+++|+.||+||++...   +..+..         ..  .++
T Consensus        81 v~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~lG~~LA~lH~~~~~---~~~~~r---------~~--~d~  146 (325)
T d1zyla1          81 VAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRK---QLFIHR---------PT--IGL  146 (325)
T ss_dssp             BCCCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTS---SCCSSS---------CB--CSH
T ss_pred             CCCceecCCCeeeeeeeEEEEEEeecCCcCCCCCCHHHHHHHHHHHHHHHhhccc---CCcccc---------CC--CCH
Confidence            99998764332    57889999999998763    4578999999999998863   221111         11  122


Q ss_pred             HHHHHHhhhHHHHHHHHh-hcCCh----HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEcc-cc
Q 022304          151 IEFYAEHRLGYQLKLALD-QYGDS----TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDP-AC  224 (299)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~-~~  224 (299)
                      ..+..+  ....   ... ...+.    .+.+.++++.+.+...... ..+.++||||+|++|||+++ + ..+||| +|
T Consensus       147 ~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~p~~liHgDlh~~NvL~~~-~-~~~IDFdd~  218 (325)
T d1zyla1         147 NEYLIE--PRKL---FEDATLIPSGLKAAFLKATDELIAAVTAHWRE-DFTVLRLHGDCHAGNILWRD-G-PMFVDLDDA  218 (325)
T ss_dssp             HHHTHH--HHHH---HHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCS-CSCCEECCSSCSGGGEEESS-S-EEECCCTTC
T ss_pred             HHHhhh--hHHH---HHHcCcCCHHHHHHHHHHHHHHHHHHHHhccc-cCCceeecCCCCcccEEEeC-C-ceEEechhc
Confidence            222211  0111   111 11122    2334455555555555443 46789999999999999964 4 679998 58


Q ss_pred             ccCCchhhhhhhhhcC------CChhhHHHhhhhCCCCCCHHHHHHHHHHHHHH
Q 022304          225 YYGHNEAEFGMSWCAG------FGGSFYNSYFEVMPKQPGFEKRRDLYMLYHYL  272 (299)
Q Consensus       225 ~~g~~~~Dla~~~~~~------~~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~~l  272 (299)
                      ++|++++|++++....      .-++|++||++++|+++.....+..+...+++
T Consensus       219 ~~g~~~~DLa~~l~~~~~~~~~~~~~~l~GY~~~~~l~~~el~~i~~l~~lR~~  272 (325)
T d1zyla1         219 RNGPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLV  272 (325)
T ss_dssp             CEECTTHHHHTTCCSSHHHHHHHHHHHHHHHTTTSCCCGGGGGGHHHHHHHHHH
T ss_pred             ccCcHHHHHHHhccccccCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999863211      12479999999999987665555555444443

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=99.94  E-value=5.3e-27  Score=197.99  Aligned_cols=218  Identities=16%  Similarity=0.164  Sum_probs=143.6

Q ss_pred             eeeeeCCcccc-ceEEEEeCCc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           26 KICPVGGGCIN-LASRYGTDAG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        26 ~~~~~~~G~~n-~~y~v~~~~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      +++++.+|.++ .+||++++++ ++|+|+.++.....++.|++++++|+.. ++|||+++..... .+..+++|+|++|.
T Consensus        14 ~~~~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~~~l~~E~~~l~~L~~~-gvpvP~v~~~~~~-~~~~~~v~~~i~G~   91 (255)
T d1nd4a_          14 DWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATT-GVPCAAVLDVVTE-AGRDWLLLGEVPGQ   91 (255)
T ss_dssp             EEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTT-TCCBCCEEEEEEC-SSCEEEEEECCSSE
T ss_pred             ceEEcCCcccCCeEEEEEeCCCCEEEEEeCCccCHhHHHHHHHHHHHHHhc-CCCCCceeeeccc-ccceEEEEEeeecc
Confidence            66798888875 6899999777 6999999876666789999999999987 7999999987654 57899999999998


Q ss_pred             CCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhh--cCCh-
Q 022304          104 SSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQ--YGDS-  173 (299)
Q Consensus       104 ~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-  173 (299)
                      ++.       ....++|+.|++||+.+...  .++.               ..+......  ...........  .... 
T Consensus        92 ~~~~~~~~~~~~~~~l~~~la~LH~~~~~~--~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~  152 (255)
T d1nd4a_          92 DLLSSHLAPAEKVSIMADAMRRLHTLDPAT--CPFD---------------HQAKHRIER--ARTRMEAGLVDQDDLDEE  152 (255)
T ss_dssp             ETTTSCCCHHHHHHHHHHHHHHHTTSCGGG--CCCB---------------CCHHHHHHH--HHHHHHTTCCCTTSCCGG
T ss_pred             ccccccccHHHHHHHHHHHHHHHccCChhh--CCCc---------------ccchhhHHH--HHHHHHHhhhccccccch
Confidence            753       23679999999999987531  1110               011111110  00000000000  0011 


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh---cCCC----hhh
Q 022304          174 TIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC---AGFG----GSF  245 (299)
Q Consensus       174 ~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~---~~~~----~~f  245 (299)
                      ............+...... ..++++||||+|++|||+++++.++||||+ +++|||++||+++..   ..++    ++|
T Consensus       153 ~~~~~~~~~~~~l~~~~~~-~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~g~~~~Dla~~~~~~~~~~~~~~~~~~  231 (255)
T d1nd4a_         153 HQGLAPAELFARLKARMPD-GEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRF  231 (255)
T ss_dssp             GTTCCHHHHHHHHHHTCCS-SCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEEETHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhCCc-cCCceEEeCCCCCcceEEeCCceEEEEEchhcccCCHHHHHHHHHHHhhhcCCHHHHHHH
Confidence            0001112222222222222 357899999999999999877667899996 679999999997631   2223    577


Q ss_pred             HHHhhhhCCCCCCHHHHHHHHHHH
Q 022304          246 YNSYFEVMPKQPGFEKRRDLYMLY  269 (299)
Q Consensus       246 ~~~Y~~~~~l~~~~~~r~~~~~l~  269 (299)
                      +++|....   ++ .+|+.+|+++
T Consensus       232 ~~~yg~~~---~d-~~r~~~y~ll  251 (255)
T d1nd4a_         232 LVLYGIAA---PD-SQRIAFYRLL  251 (255)
T ss_dssp             HHHHTCSS---CC-HHHHHHHHHH
T ss_pred             HHHcCCCC---CC-HHHHHHHHHH
Confidence            88886432   23 5788888764

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.91  E-value=8.4e-25  Score=185.17  Aligned_cols=215  Identities=15%  Similarity=0.106  Sum_probs=138.3

Q ss_pred             eeeeCCccc-cceEEEEeCCccEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPVGGGCI-NLASRYGTDAGSFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~~G~~-n~~y~v~~~~g~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      +.+..+|.+ +.+|+|++++++||||+....   ....+.+|..++++|++  ++|||+++..+.. .+..+++|++++|
T Consensus        18 ~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~--~vpvP~vl~~~~~-~~~~~lv~~~l~G   94 (263)
T d1j7la_          18 CVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEG--KLPVPKVLHFERH-DGWSNLLMSEADG   94 (263)
T ss_dssp             EEECSCCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTT--TSCCCCEEEEEEE-TTEEEEEEECCSS
T ss_pred             EEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhc--cCCCCcEEEEEec-CCceEEEEEeccc
Confidence            344454554 579999998889999998642   34557899999999976  5899999987654 5789999999999


Q ss_pred             CCC-----C-----CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhh---
Q 022304          103 GSS-----R-----GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQ---  169 (299)
Q Consensus       103 ~~~-----~-----~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  169 (299)
                      .+.     +     ....++|+.+++||+...+.  ++...            +   ......  ............   
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~~--~~~~~------------~---~~~~~~--~~~~~~~~~~~~~~~  155 (263)
T d1j7la_          95 VLCSEEYEDEQSPEKIIELYAECIRLFHSIDISD--CPYTN------------S---LDSRLA--ELDYLLNNDLADVDC  155 (263)
T ss_dssp             EEHHHHTTTCSCHHHHHHHHHHHHHHHHTSCCTT--CSCBC------------C---HHHHHH--HHHHHHHTTCSCCCG
T ss_pred             ccccccccccccHHHHHHHHHHHHHHHhccCccc--cccCc------------c---hhhhhh--hHHHHHHHHhhhhhh
Confidence            763     1     13578999999999987531  11110            0   000110  011111000000   


Q ss_pred             --cCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc-cccCCchhhhhhhhh-----cCC
Q 022304          170 --YGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMSWC-----AGF  241 (299)
Q Consensus       170 --~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~~~-----~~~  241 (299)
                        ...........++.+.+.....  ..++++||||+|++|||+++++.++||||+ +++|||.+|++.+..     .+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g~~~~Dla~~~~~~~~~~~~  233 (263)
T d1j7la_         156 ENWEEDTPFKDPRELYDFLKTEKP--EEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGE  233 (263)
T ss_dssp             GGGSTTCSCSSHHHHHHHHHHSCC--CCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEEEHHHHHHHHHHHHHHHCSC
T ss_pred             hcccccccchHHHHHHHHHHhcCC--cCCcEEEEeeccCcceeecCCceEEEeechhcccCCHHHHHHHHHHHhhhccCC
Confidence              0000011223334444443333  246799999999999999877767899995 789999999997631     111


Q ss_pred             ---ChhhHHHhhhhCCCCCCHHHHHHHHHHHH
Q 022304          242 ---GGSFYNSYFEVMPKQPGFEKRRDLYMLYH  270 (299)
Q Consensus       242 ---~~~f~~~Y~~~~~l~~~~~~r~~~~~l~~  270 (299)
                         .+.|+++|+    +..+ .+|+.+|+++.
T Consensus       234 ~~~~~~fl~~Yg----~~~d-~~~l~~y~~l~  260 (263)
T d1j7la_         234 EQYVELFFDLLG----IKPD-WEKIKYYILLD  260 (263)
T ss_dssp             THHHHHHHHHHT----SCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCCC-HHHHHHHHHHH
Confidence               247999996    2233 47888887653

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=2e-22  Score=180.27  Aligned_cols=218  Identities=15%  Similarity=0.141  Sum_probs=133.5

Q ss_pred             cccCCcchHHHHHHhcCC--CcceeeeeeeCCccccceEEEEeCCc--cEEEEecCCC----------CcchHHHHHHHH
Q 022304            3 VAALSDDPIREWILSEGK--ATHITKICPVGGGCINLASRYGTDAG--SFFVKTNRSI----------GPSMFEGEALGL   68 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~G~~n~~y~v~~~~g--~~vlK~~~~~----------~~~~~~~E~~~l   68 (299)
                      ...|+++.+..+..+.+.  .....+++++++|..|.||||+..++  ++|||.+++.          +..+...|+++|
T Consensus         5 ~e~Lt~~~~~~la~~lg~~~~~~~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L   84 (392)
T d2pula1           5 YETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSAL   84 (392)
T ss_dssp             CCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHHcCCCCCCCCeeEEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHH
Confidence            356888888888877743  33456788999999999999987654  8999987641          124467799999


Q ss_pred             HHHHhcCCCCCccceeecccCCCceEEEEecccCCCC-----------CCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 022304           69 GAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS-----------RGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTI  137 (299)
Q Consensus        69 ~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~-----------~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~  137 (299)
                      +.++...+.+||+++.++.   ...+++||+++|...           +....++|+.|+++|......   ........
T Consensus        85 ~~~~~~~p~~vP~v~~~d~---~~~~lvmE~L~~~~~~~~~l~~~~~~~~~a~~lg~~La~~h~~~~~~---~~~~~~~~  158 (392)
T d2pula1          85 IRQGEHVPHLVPRVFYSDT---EMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDY---ALEPKVKK  158 (392)
T ss_dssp             HHHHTTCGGGSCCEEEEET---TTTEEEECCCTTSEEHHHHHHHTCCCTTHHHHHHHHHHHHHHHTSTT---TSCHHHHH
T ss_pred             HHhhhhCCCCcceEEEEcC---CCCEEEEeccCCcccchhhhcccchhHHHHHHHHHHHHHHHHHhccc---cccchhhc
Confidence            9998877788999999874   577899999988542           245688999999999876531   11100000


Q ss_pred             cccc-cCCCCCCCHHHHHH--H-----------hhhHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccC
Q 022304          138 GSTP-QINKWTSNWIEFYA--E-----------HRLGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGD  203 (299)
Q Consensus       138 g~~~-~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgD  203 (299)
                      +... ..+.+...|.....  .           ...........   .+..+...+.    .+...+.  ..+.+|||||
T Consensus       159 ~~~~~~~n~~l~~~~e~~~~~~py~~~~~~~~~~~~~~~~~~l~---~d~~l~~~~~----~l~~~~~--~~~~~LiHGD  229 (392)
T d2pula1         159 QLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLW---NNDSVKIEAA----KLKKSFL--TSAETLIHGD  229 (392)
T ss_dssp             HHHHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHH---TCHHHHHHHH----HHHHHHH--HBCCEEECSC
T ss_pred             ccccccccHHHHHHHHhhhcchHHHHHHHhhcchhhhHHHHhhh---hhHHHHHHHH----HHHhhcc--cCCcceeccC
Confidence            0000 00000000000000  0           00000000000   1111111222    2222222  2467999999


Q ss_pred             CCCCCeeecCCCCeEEEccc-cccCCchhhhhhh
Q 022304          204 LWSGNISSDKNGEPVILDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       204 l~~~Nvl~~~~~~~~iID~~-~~~g~~~~Dla~~  236 (299)
                      ||++|||+++++ ++||||+ +.+|||.+||+.+
T Consensus       230 l~~gNIlv~~~~-~~vID~E~a~~G~~~~Dlg~~  262 (392)
T d2pula1         230 LHTGSIFASEHE-TKVIDPEFAFYGPIGFDVGQF  262 (392)
T ss_dssp             CCGGGEEECSSC-EEECCCTTCEEECTHHHHHHH
T ss_pred             CcCCceeEcCCc-eEEechhhcccCCHHHHHHHH
Confidence            999999998765 8999995 7899999999975

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.80  E-value=5.4e-19  Score=157.97  Aligned_cols=187  Identities=16%  Similarity=0.100  Sum_probs=124.4

Q ss_pred             CcceeeeeeeCCccccceEEEEeCCc---------cEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCC
Q 022304           21 ATHITKICPVGGGCINLASRYGTDAG---------SFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPT   90 (299)
Q Consensus        21 ~~~~~~~~~~~~G~~n~~y~v~~~~g---------~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~   90 (299)
                      ..+..++++++||.+|.+|+|+..++         ++++|+++.. ......+|..+++.|++. ++ +|+++..+..  
T Consensus        41 ~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls~~-gl-~Pkll~~~~~--  116 (395)
T d1nw1a_          41 PLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSER-HL-GPKLYGIFSG--  116 (395)
T ss_dssp             CGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHT-TS-SSCEEEEETT--
T ss_pred             CccceEEEEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHHhC-CC-CCeEEEEcCC--
Confidence            34567899999999999999997542         5889998742 223356899999999986 55 8999998743  


Q ss_pred             CceEEEEecccCCCCC-------CcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHH
Q 022304           91 GGSYIIMEFIEFGSSR-------GNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQL  163 (299)
Q Consensus        91 ~~~~~v~e~l~G~~~~-------~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  163 (299)
                         +++++|++|..+.       .....+++.|+++|....+.  ..  .+        .    ..|.      ++..++
T Consensus       117 ---g~I~efi~g~~l~~~d~~~~~~~~~iA~~La~lH~~~~~~--~~--~~--------~----~~~~------~i~~~l  171 (395)
T d1nw1a_         117 ---GRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPI--WK--EP--------D----YLCE------ALQRWL  171 (395)
T ss_dssp             ---EEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSS--CC--SS--------C----HHHH------HHHHHH
T ss_pred             ---ceEEEEeccccCChhhccchhhhHHHHHHHHHHhhccccc--cc--Cc--------c----hHHH------HHHHHH
Confidence               8999999997653       24689999999999987531  00  00        0    0111      111111


Q ss_pred             HHHHhh-------------cCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecC-----------------
Q 022304          164 KLALDQ-------------YGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDK-----------------  213 (299)
Q Consensus       164 ~~~~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~-----------------  213 (299)
                      +.....             .........+.+.++.+...+.....+.++||+|++++|||+.+                 
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~lv~CHnDL~~~NiL~~~~~~~~~~~~~~~~~~~~  251 (395)
T d1nw1a_         172 KQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQA  251 (395)
T ss_dssp             HHHHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC-----------------
T ss_pred             HhhhhhhhHHHhhhhhhhhccccccHHHHHHHHHHHHHHhhcccCCeeEEecCCCcccEeeccccccccccccccccccc
Confidence            111110             01111112233334444545444356789999999999999843                 


Q ss_pred             -----------CCCeEEEccc-cccCCchhhhhhh
Q 022304          214 -----------NGEPVILDPA-CYYGHNEAEFGMS  236 (299)
Q Consensus       214 -----------~~~~~iID~~-~~~g~~~~Dla~~  236 (299)
                                 ++...+|||+ +++|+|.+|||..
T Consensus       252 ~~~~~~~~~~~~~~l~lID~EYa~~n~~~fDian~  286 (395)
T d1nw1a_         252 LGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANH  286 (395)
T ss_dssp             -------------CCEECCCTTCEEEEHHHHHHHH
T ss_pred             cccccccccCCCCcEEEEeecccCCCcchhhHHHH
Confidence                       3457899995 8999999999964

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.91  E-value=3.2e-09  Score=83.92  Aligned_cols=68  Identities=15%  Similarity=0.123  Sum_probs=46.2

Q ss_pred             eeeCCccccceEEEEeCCc-cEEEEecCCCC------c---------------chHHHHHHHHHHHHhcCCCCCccceee
Q 022304           28 CPVGGGCINLASRYGTDAG-SFFVKTNRSIG------P---------------SMFEGEALGLGAMYETRTIRAPRPFKV   85 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~~------~---------------~~~~~E~~~l~~L~~~~~~~vP~~~~~   85 (299)
                      .++|.|..+.||+....+| .+.+|+.+...      .               .....|+..+..+.   ++++|.++..
T Consensus         6 ~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~---~~~v~~~~~~   82 (191)
T d1zara2           6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ---GLAVPKVYAW   82 (191)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT---TSSSCCEEEE
T ss_pred             CEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHcc---CCCcceEEEe
Confidence            5788899999999987666 89999864310      0               11223555554443   5788988876


Q ss_pred             cccCCCceEEEEecccCC
Q 022304           86 GALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        86 ~~~~~~~~~~v~e~l~G~  103 (299)
                      ..     .+++|++++|.
T Consensus        83 ~~-----~~lvme~~~~~   95 (191)
T d1zara2          83 EG-----NAVLMELIDAK   95 (191)
T ss_dssp             ET-----TEEEEECCCCE
T ss_pred             cC-----CEEEEEeeccc
Confidence            53     38999999885

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6e-08  Score=81.74  Aligned_cols=151  Identities=15%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             cchHHHHHHhc-CCC---cceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCC---CCcchHHHHHHHHHHHHhcCCCC
Q 022304            8 DDPIREWILSE-GKA---THITKICPVGGGCINLASRYGTD-AG-SFFVKTNRS---IGPSMFEGEALGLGAMYETRTIR   78 (299)
Q Consensus         8 ~~~i~~~l~~~-~~~---~~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~---~~~~~~~~E~~~l~~L~~~~~~~   78 (299)
                      .+++.+-|+.. ..+   ..-.-++.+|.|..+.||++... .| .|.+|+...   .....+.+|+.+++.|..   -.
T Consensus         2 d~~~~~~l~~~~~~~dp~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~H---pn   78 (293)
T d1yhwa1           2 DEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN---PN   78 (293)
T ss_dssp             HHHHHHHHHHHSBSSCTTTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCC---TT
T ss_pred             hHHHHHHHhccCCCCCcccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCC---CC
Confidence            34555555543 111   13344688999999999999853 34 788997642   234567889999888853   24


Q ss_pred             CccceeecccCCCceEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhh
Q 022304           79 APRPFKVGALPTGGSYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHR  158 (299)
Q Consensus        79 vP~~~~~~~~~~~~~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (299)
                      +.+++..... .+..|++|||++|+.+    ..   .   ++....                        +.      ..
T Consensus        79 Iv~~~~~~~~-~~~~~ivmEy~~gg~L----~~---~---~~~~~l------------------------~~------~~  117 (293)
T d1yhwa1          79 IVNYLDSYLV-GDELWVVMEYLAGGSL----TD---V---VTETCM------------------------DE------GQ  117 (293)
T ss_dssp             BCCEEEEEEE-TTEEEEEEECCTTCBH----HH---H---HHHSCC------------------------CH------HH
T ss_pred             EeeEeEEEEE-CCEEEEEEEecCCCcH----HH---H---hhccCC------------------------CH------HH
Confidence            5666655433 5688999999999743    11   1   111110                        00      00


Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          159 LGYQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +                ...+.+++..+..+..     ..++|+|++|.|||++.++.+.|+||.
T Consensus       118 ~----------------~~i~~qi~~aL~yLH~-----~~iiHrDiKp~NILl~~~~~vkl~DFG  161 (293)
T d1yhwa1         118 I----------------AAVCRECLQALEFLHS-----NQVIHRDIKSDNILLGMDGSVKLTDFG  161 (293)
T ss_dssp             H----------------HHHHHHHHHHHHHHHH-----TTEECCCCSGGGEEECTTCCEEECCCT
T ss_pred             H----------------HHHHHHHHHHHHHHHH-----CCCcccCCcHHHeEECCCCcEeeccch
Confidence            1                1122333444443332     479999999999999988888999985

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.9e-08  Score=82.70  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=85.4

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++.+|.|..+.||++... .+ .|.+|+....   ....+.+|+.+++.|..   -.+.+++..... .+..+++|||++
T Consensus        17 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~H---pnIv~l~~~~~~-~~~~~lvmEy~~   92 (288)
T d2jfla1          17 IGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDH---PNIVKLLDAFYY-ENNLWILIEFCA   92 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCC---TTBCCEEEEEEE-TTEEEEEEECCT
T ss_pred             eEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCC---CCCCeEEEEEee-CCeEEEEEecCC
Confidence            467899999999999863 34 6788986532   23557889999988852   245566655433 578899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHH
Q 022304          102 FGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHR  181 (299)
Q Consensus       102 G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (299)
                      |+.+       ...+.+   ...+   +                   ++.      ..                ...+.+
T Consensus        93 ~g~L-------~~~~~~---~~~~---l-------------------~e~------~~----------------~~i~~q  118 (288)
T d2jfla1          93 GGAV-------DAVMLE---LERP---L-------------------TES------QI----------------QVVCKQ  118 (288)
T ss_dssp             TEEH-------HHHHHH---HTSC---C-------------------CHH------HH----------------HHHHHH
T ss_pred             CCcH-------HHHHHh---cCCC---C-------------------CHH------HH----------------HHHHHH
Confidence            9743       122221   1110   0                   000      00                112223


Q ss_pred             HHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          182 LMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       182 ~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ++..+..+..     ..++|+|++|+|||++.++...|+||.
T Consensus       119 i~~gL~ylH~-----~~ivHrDiKp~NIll~~~~~~Kl~DFG  155 (288)
T d2jfla1         119 TLDALNYLHD-----NKIIHRDLKAGNILFTLDGDIKLADFG  155 (288)
T ss_dssp             HHHHHHHHHH-----TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             HHHHHHHHHH-----CCEEEeecChhheeECCCCCEEEEech
Confidence            3333333322     479999999999999988888999985

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.65  E-value=1.1e-07  Score=79.34  Aligned_cols=134  Identities=13%  Similarity=0.037  Sum_probs=85.8

Q ss_pred             eeeeCCccccceEEEEe-CCc-cEEEEecCCC---C---------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCc
Q 022304           27 ICPVGGGCINLASRYGT-DAG-SFFVKTNRSI---G---------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGG   92 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~---~---------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~   92 (299)
                      .+.||.|..+.||++.. .+| .|.+|+-...   .         ...+.+|+.+++.|..+  -.+.+++..... .+.
T Consensus         8 ~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h--pnIv~~~~~~~~-~~~   84 (277)
T d1phka_           8 KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGH--PNIIQLKDTYET-NTF   84 (277)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTC--TTBCCEEEEEEC-SSE
T ss_pred             ceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccc-Ccc
Confidence            56788898899999986 344 6778875431   1         12466899999999765  245667765543 578


Q ss_pred             eEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCC
Q 022304           93 SYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGD  172 (299)
Q Consensus        93 ~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (299)
                      .|++|||++|+++       -..+.   ....    +                   ++.      ..             
T Consensus        85 ~~ivmE~~~~g~L-------~~~l~---~~~~----l-------------------~e~------~~-------------  112 (277)
T d1phka_          85 FFLVFDLMKKGEL-------FDYLT---EKVT----L-------------------SEK------ET-------------  112 (277)
T ss_dssp             EEEEEECCTTCBH-------HHHHH---HHSS----C-------------------CHH------HH-------------
T ss_pred             eEEEEEcCCCchH-------HHHHH---hcCC----C-------------------CHH------HH-------------
Confidence            8999999998743       22222   1110    0                   000      00             


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          173 STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       173 ~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                         ...+.+++..+..+..     ..++|+|++|+|||++.++...|+|+.
T Consensus       113 ---~~~~~qi~~al~~lH~-----~~ivHrDlkp~Nill~~~~~~kl~DFG  155 (277)
T d1phka_         113 ---RKIMRALLEVICALHK-----LNIVHRDLKPENILLDDDMNIKLTDFG  155 (277)
T ss_dssp             ---HHHHHHHHHHHHHHHH-----TTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             ---HHHHHHHHHHHHHHHH-----cCCcccccccceEEEcCCCCeEEccch
Confidence               1122233333343322     479999999999999988888899985

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.9e-08  Score=81.02  Aligned_cols=133  Identities=17%  Similarity=0.108  Sum_probs=84.7

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.+|.|..+.||++... ++ .|.+|+...      .....+.+|+.+++.|..   -.+.+++.+... .+..|++||
T Consensus        11 ~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~h---pnIv~~~~~~~~-~~~~~ivmE   86 (263)
T d2j4za1          11 GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH---PNILRLYGYFHD-ATRVYLILE   86 (263)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCC---TTBCCEEEEEEC-SSEEEEEEE
T ss_pred             EEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCC---CCCCeEEEEEEE-CCEEEEEEe
Confidence            467899989999999874 34 688897532      233557788888877742   245666665543 578899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+++       ...+.+   ...    +                   ++.      .+                ...
T Consensus        87 y~~~g~L-------~~~l~~---~~~----l-------------------~e~------~~----------------~~i  111 (263)
T d2j4za1          87 YAPLGTV-------YRELQK---LSK----F-------------------DEQ------RT----------------ATY  111 (263)
T ss_dssp             CCTTCBH-------HHHHHH---HSS----C-------------------CHH------HH----------------HHH
T ss_pred             ecCCCcH-------HHHHhh---cCC----C-------------------CHH------HH----------------HHH
Confidence            9998743       222221   110    0                   000      00                112


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+..     ..++|+|++|+|||+++++...|+||.
T Consensus       112 ~~qi~~al~~lH~-----~~ivHrDiKp~Nill~~~~~~kl~DFG  151 (263)
T d2j4za1         112 ITELANALSYCHS-----KRVIHRDIKPENLLLGSAGELKIADFG  151 (263)
T ss_dssp             HHHHHHHHHHHHH-----TTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             HHHHHHHHHHHHH-----CCeeeeeeccccceecCCCCEeecccc
Confidence            2233333443322     479999999999999988888999985

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1e-07  Score=79.40  Aligned_cols=77  Identities=23%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             eeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           24 ITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..-.+.+|.|..+.||+....++ .+.||.....  ....+.+|+.+++.|. +  -.+.+++....  ++..+++|||+
T Consensus        15 ~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~-H--pnIv~~~g~~~--~~~~~iv~Ey~   89 (272)
T d1qpca_          15 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQ-H--QRLVRLYAVVT--QEPIYIITEYM   89 (272)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCC-C--TTBCCEEEEEC--SSSCEEEEECC
T ss_pred             eEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCC-C--CCEeEEEeeec--cCCeEEEEEeC
Confidence            33457799999999999987665 6778977542  3455789999998884 3  24556666543  46679999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +++.+
T Consensus        90 ~~g~L   94 (272)
T d1qpca_          90 ENGSL   94 (272)
T ss_dssp             TTCBH
T ss_pred             CCCcH
Confidence            98743

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.3e-07  Score=79.39  Aligned_cols=74  Identities=8%  Similarity=-0.045  Sum_probs=52.5

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.+|.|..+.||++... +| .|.+|+...      .....+.+|+.+++.|..   -.+.+++..... .+..|++||
T Consensus        13 ~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~H---pnIv~l~~~~~~-~~~~~ivmE   88 (288)
T d1uu3a_          13 GKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH---PFFVKLYFTFQD-DEKLYFGLS   88 (288)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCS---TTBCCEEEEEEC-SSEEEEEEC
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCC---CCeeEEEEEEEE-CCEEEEEEE
Confidence            467888888999999863 34 788997542      223457889999888853   235566655433 568899999


Q ss_pred             cccCCC
Q 022304           99 FIEFGS  104 (299)
Q Consensus        99 ~l~G~~  104 (299)
                      |++|++
T Consensus        89 y~~gg~   94 (288)
T d1uu3a_          89 YAKNGE   94 (288)
T ss_dssp             CCTTEE
T ss_pred             ccCCCC
Confidence            999864

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1e-07  Score=79.28  Aligned_cols=143  Identities=17%  Similarity=0.102  Sum_probs=73.4

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++... +| .|.+|......     ...+.+|+.+++.|..   -.+.+++...... .+..|++||
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~H---pnIv~~~~~~~~~~~~~~~ivmE   85 (269)
T d2java1           9 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKH---PNIVRYYDRIIDRTNTTLYIVME   85 (269)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCC---TTBCCEEEEEEC----CEEEEEE
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCC---CCEeeEEEEEEeCCCCEEEEEEe
Confidence            477898988999999863 44 68889765321     2335667776655532   2344555433211 356799999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+++       ...+.+.......   +                   ++..      +.                ..
T Consensus        86 y~~~g~L-------~~~i~~~~~~~~~---l-------------------~e~~------~~----------------~i  114 (269)
T d2java1          86 YCEGGDL-------ASVITKGTKERQY---L-------------------DEEF------VL----------------RV  114 (269)
T ss_dssp             CCTTEEH-------HHHHHHHHHHTCC---C-------------------CHHH------HH----------------HH
T ss_pred             cCCCCcH-------HHHHHhccccCCC---C-------------------CHHH------HH----------------HH
Confidence            9999733       2333332221110   0                   0000      00                11


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.........++|+|++|+|||++.++.+.|+||.
T Consensus       115 ~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG  159 (269)
T d2java1         115 MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG  159 (269)
T ss_dssp             HHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecc
Confidence            122222222222110123569999999999999988888999974

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.5e-07  Score=79.00  Aligned_cols=138  Identities=19%  Similarity=0.122  Sum_probs=86.0

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      ..-.+.+|.|..+.||+.... .+ .|.+|.....  ....+.+|+.+++.|..   -.+.+++..... .+..+++|||
T Consensus        19 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~H---pnIv~~~~~~~~-~~~~~iv~E~   94 (287)
T d1opja_          19 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH---PNLVQLLGVCTR-EPPFYIITEF   94 (287)
T ss_dssp             EEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCC---TTBCCEEEEECS-SSSCEEEEEC
T ss_pred             eEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCC---CCEecCCccEee-CCeeEEEeec
Confidence            333577999999999998764 34 6778976542  33557889999988852   235555655433 5678999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHH
Q 022304          100 IEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRG  179 (299)
Q Consensus       100 l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (299)
                      ++|+.+       -.   .++.....    .                 .++..      +.                ..+
T Consensus        95 ~~~g~l-------~~---~l~~~~~~----~-----------------~~~~~------~~----------------~i~  121 (287)
T d1opja_          95 MTYGNL-------LD---YLRECNRQ----E-----------------VSAVV------LL----------------YMA  121 (287)
T ss_dssp             CTTCBH-------HH---HHHHSCTT----T-----------------SCHHH------HH----------------HHH
T ss_pred             ccCcch-------HH---Hhhhcccc----c-----------------hHHHH------HH----------------HHH
Confidence            998633       11   22322210    0                 01110      00                111


Q ss_pred             HHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          180 HRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       180 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+++..+..+..     ..++|+|++|.|||++.++.+.|.||.
T Consensus       122 ~qi~~gL~yLH~-----~~iiHrDlKp~NILl~~~~~~Kl~DFG  160 (287)
T d1opja_         122 TQISSAMEYLEK-----KNFIHRDLAARNCLVGENHLVKVADFG  160 (287)
T ss_dssp             HHHHHHHHHHHH-----TTCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             HHHHHHHHHHHH-----CCcccCccccCeEEECCCCcEEEcccc
Confidence            223333332322     369999999999999988888999985

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.9e-07  Score=76.18  Aligned_cols=78  Identities=19%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             eeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           24 ITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ..-++.+|.|..+.||+....++ .+.+|.-...  ....+.+|+..++.|..   -.+.+++..... .+..+++|||+
T Consensus         7 ~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~H---pnIv~~~g~~~~-~~~~~lv~E~~   82 (263)
T d1sm2a_           7 LTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH---PKLVQLYGVCLE-QAPICLVFEFM   82 (263)
T ss_dssp             EEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCC---TTBCCEEEEECS-SSSCEEEEECC
T ss_pred             cEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCC---CCcccccceecc-CCceEEEEEec
Confidence            44457899999999999987655 6888976542  34557889998888853   245566665443 56889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +++.+
T Consensus        83 ~~g~L   87 (263)
T d1sm2a_          83 EHGCL   87 (263)
T ss_dssp             TTCBH
T ss_pred             CCCcH
Confidence            98743

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.9e-07  Score=79.44  Aligned_cols=73  Identities=18%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++... +| .|.+|+...      .....+..|+.+++.+..   -.+.+++..... .+..|++||
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~H---pnIv~~~~~~~~-~~~~~ivmE   84 (316)
T d1fota_           9 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH---PFIIRMWGTFQD-AQQIFMIMD   84 (316)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCB---TTBCCEEEEEEC-SSEEEEEEC
T ss_pred             EEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccC---cChhheeeeEee-CCeeeeEee
Confidence            467888989999999863 34 788897642      223456788888877742   235566665443 578899999


Q ss_pred             cccCC
Q 022304           99 FIEFG  103 (299)
Q Consensus        99 ~l~G~  103 (299)
                      +++|.
T Consensus        85 ~~~gg   89 (316)
T d1fota_          85 YIEGG   89 (316)
T ss_dssp             CCCSC
T ss_pred             ecCCc
Confidence            99986

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=98.50  E-value=2.6e-07  Score=78.91  Aligned_cols=78  Identities=10%  Similarity=0.001  Sum_probs=57.2

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecccC-CCceEEEEecccC
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-TGGSYIIMEFIEF  102 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-~~~~~~v~e~l~G  102 (299)
                      =++.+|.|..+.||+++.. .| .|.+|+-.......+.+|+.+++.|..+  --+++++...... ....+++||+++|
T Consensus        39 i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~h--pnIv~~~~~~~~~~~~~~~~v~e~~~~  116 (328)
T d3bqca1          39 LVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGG--PNIITLADIVKDPVSRTPALVFEHVNN  116 (328)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTS--TTBCCEEEEEECTTTCSEEEEEECCCS
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCC--CCCcEEEEEEEecCCCceeEEEeecCC
Confidence            3578999999999999863 34 6788987655556688999999999754  2466666543321 4568999999998


Q ss_pred             CCC
Q 022304          103 GSS  105 (299)
Q Consensus       103 ~~~  105 (299)
                      ..+
T Consensus       117 ~~L  119 (328)
T d3bqca1         117 TDF  119 (328)
T ss_dssp             CBG
T ss_pred             CcH
Confidence            744

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.1e-08  Score=80.76  Aligned_cols=75  Identities=12%  Similarity=0.046  Sum_probs=52.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++.+|.|..+.||++... +| .|.+|+...    .....+.+|+.+++.|..   -.+.+++..... .+..|++|||+
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~H---pnIv~~~~~~~~-~~~~~ivmEy~   85 (271)
T d1nvra_          10 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNH---ENVVKFYGHRRE-GNIQYLFLEYC   85 (271)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCC---TTBCCEEEEEEE-TTEEEEEEECC
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCC---CCEeeEeeeecc-CceeEEEEecc
Confidence            567899989999999863 34 788898643    123457889988887742   235566655443 56889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|+++
T Consensus        86 ~gg~L   90 (271)
T d1nvra_          86 SGGEL   90 (271)
T ss_dssp             TTEEG
T ss_pred             CCCcH
Confidence            99755

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.2e-07  Score=80.89  Aligned_cols=77  Identities=18%  Similarity=0.040  Sum_probs=52.5

Q ss_pred             eeeeeeCCccccceEEEEeC-Cc-cEEEEecCCC----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           25 TKICPVGGGCINLASRYGTD-AG-SFFVKTNRSI----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .-++.+|.|..+.||++... .| .|.+|+....    ....+.+|+.+++.|..   -.+.+++..... .+..+++||
T Consensus         9 ~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~H---pnIv~l~~~~~~-~~~~~iVmE   84 (322)
T d1s9ja_           9 EKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS---PYIVGFYGAFYS-DGEISICME   84 (322)
T ss_dssp             EEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCC---TTBCCEEEEEEC-SSEEEEEEE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCC---CCCCcEEEEEEE-CCEEEEEEE
Confidence            34678999999999999863 34 6778876432    12456678887776642   235555554433 568899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|..+
T Consensus        85 y~~gg~L   91 (322)
T d1s9ja_          85 HMDGGSL   91 (322)
T ss_dssp             CCTTEEH
T ss_pred             cCCCCcH
Confidence            9999743

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.42  E-value=1.1e-06  Score=73.79  Aligned_cols=73  Identities=8%  Similarity=0.055  Sum_probs=54.4

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      .+.+|.|..+.||++... +| .+.+|+.+. .....++.|.+.+..|...  --+|.++..... .+..+++||++.|
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~--~~i~~~~~~~~~-~~~~~~vme~~~~   85 (293)
T d1csna_          10 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGC--TGIPNVYYFGQE-GLHNVLVIDLLGP   85 (293)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTC--TTCCCEEEEEEE-TTEEEEEEECCCC
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCC--CCCCEEEEEeec-CCccEEEEEecCC
Confidence            467888989999999864 34 688898653 3345678899999998753  356777777654 5788999999854

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=98.42  E-value=1.8e-07  Score=80.76  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++.||.|..+.||++... .| .|.+|+.....   ...+.+|+.+++.|. +  -.+.+++..... .+..|++|||++
T Consensus        34 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~-H--pnIv~~~~~~~~-~~~~~ivmE~~~  109 (352)
T d1koba_          34 LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLH-H--PKLINLHDAFED-KYEMVLILEFLS  109 (352)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCC-S--TTBCCEEEEEEC-SSEEEEEEECCC
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEE-CCEEEEEEEcCC
Confidence            467899999999999863 34 78889765422   344667888887774 2  235556654433 578899999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |+.+
T Consensus       110 gg~L  113 (352)
T d1koba_         110 GGEL  113 (352)
T ss_dssp             CCBH
T ss_pred             CChH
Confidence            9743

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=4.6e-07  Score=75.44  Aligned_cols=75  Identities=19%  Similarity=0.092  Sum_probs=48.7

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccC---CCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~~~~   95 (299)
                      .+.+|.|..+.||++... .| .|.+|+-...   .   ...+.+|+.+++.+..   -.+.+++......   .+..|+
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~h---pniv~~~~~~~~~~~~~~~~~l   88 (277)
T d1o6ya_          12 GEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNH---PAIVAVYDTGEAETPAGPLPYI   88 (277)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEEEEECSSSEEEEE
T ss_pred             eEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCC---CCCCcccceeeeccCCCceEEE
Confidence            467898989999999853 34 7889986532   1   1346678877766542   2345555443221   235789


Q ss_pred             EEecccCCC
Q 022304           96 IMEFIEFGS  104 (299)
Q Consensus        96 v~e~l~G~~  104 (299)
                      +|||++|..
T Consensus        89 vmE~~~g~~   97 (277)
T d1o6ya_          89 VMEYVDGVT   97 (277)
T ss_dssp             EEECCCEEE
T ss_pred             EEECCCCCE
Confidence            999999964

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=3.2e-07  Score=77.75  Aligned_cols=76  Identities=11%  Similarity=-0.015  Sum_probs=51.3

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC------cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG------PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~------~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      -..++.+|.|..+.||++... ++ .|.+|+-....      ...+.+|+.+++.|..   -.+.+++..... .+..|+
T Consensus        17 y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~H---pnIv~~~~~~~~-~~~~~i   92 (309)
T d1u5ra_          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH---PNTIQYRGCYLR-EHTAWL   92 (309)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCC---TTBCCEEEEEEE-TTEEEE
T ss_pred             cEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCC---CCEeeEEEEEEE-CCEEEE
Confidence            456789999999999999753 44 67788764321      1335678887776642   134445544333 568899


Q ss_pred             EEecccCC
Q 022304           96 IMEFIEFG  103 (299)
Q Consensus        96 v~e~l~G~  103 (299)
                      +|||++|.
T Consensus        93 v~E~~~~g  100 (309)
T d1u5ra_          93 VMEYCLGS  100 (309)
T ss_dssp             EEECCSEE
T ss_pred             EEEecCCC
Confidence            99999886

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7e-07  Score=76.14  Aligned_cols=77  Identities=14%  Similarity=0.118  Sum_probs=52.5

Q ss_pred             eeeeeCCccccceEEEEeCC-c------cEEEEecCC----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           26 KICPVGGGCINLASRYGTDA-G------SFFVKTNRS----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~-g------~~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      =.+.+|.|..+.||+++... +      .+.+|....    .....+..|..++..+..|  -.+.+++..... .+..+
T Consensus        41 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~H--pnIv~l~~~~~~-~~~~~  117 (325)
T d1rjba_          41 FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSH--ENIVNLLGACTL-SGPIY  117 (325)
T ss_dssp             EEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCC--TTBCCEEEEECS-SSSCE
T ss_pred             EeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCC--CcEeEEEEEEee-CCeEE
Confidence            34678999899999987521 1      366776543    1234577899998888554  245566665443 57889


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++|||++|+.+
T Consensus       118 lv~Ey~~~g~L  128 (325)
T d1rjba_         118 LIFEYCCYGDL  128 (325)
T ss_dssp             EEEECCTTCBH
T ss_pred             EEEEcCCCCcH
Confidence            99999999744

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.6e-07  Score=74.48  Aligned_cols=76  Identities=20%  Similarity=0.242  Sum_probs=55.8

Q ss_pred             eeeeeeeCCccccceEEEEeCCc-cEEEEecCCC--CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           24 ITKICPVGGGCINLASRYGTDAG-SFFVKTNRSI--GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      +.-.+.+|.|..+.||+....++ .+.+|.-...  ....+.+|+.+++.+..   -.+.+++.+..  ++..+++|||+
T Consensus        19 ~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h---~nIv~~~g~~~--~~~~~lv~Ey~   93 (285)
T d1fmka3          19 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH---EKLVQLYAVVS--EEPIYIVTEYM   93 (285)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCC---TTBCCEEEEEC--SSSCEEEECCC
T ss_pred             EEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhccc---CCEeEEEEEEe--cCCeEEEEEec
Confidence            34457799999999999988665 6778986542  23557889999888854   24566676543  45689999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|+.
T Consensus        94 ~~g~   97 (285)
T d1fmka3          94 SKGS   97 (285)
T ss_dssp             TTCB
T ss_pred             CCCc
Confidence            9863

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.1e-07  Score=76.92  Aligned_cols=74  Identities=15%  Similarity=0.086  Sum_probs=53.8

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC--cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccC
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG--PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEF  102 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~--~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G  102 (299)
                      .+.+|.|..+.||++... .+ .|.+|+.....  ...+.+|+++++.+..   -.+.+++..... .+..|++|||++|
T Consensus        10 ~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~H---pnIv~~~~~~~~-~~~~~lvmE~~~g   85 (321)
T d1tkia_          10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARH---RNILHLHESFES-MEELVMIFEFISG   85 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCC---TTBCCEEEEEEE-TTEEEEEECCCCC
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCC---CCCCeEEEEEEE-CCEEEEEEecCCC
Confidence            367888988999998764 34 78999876532  2456789988887753   246666655433 5789999999998


Q ss_pred             CC
Q 022304          103 GS  104 (299)
Q Consensus       103 ~~  104 (299)
                      .+
T Consensus        86 g~   87 (321)
T d1tkia_          86 LD   87 (321)
T ss_dssp             CB
T ss_pred             Cc
Confidence            64

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.5e-07  Score=77.13  Aligned_cols=132  Identities=17%  Similarity=0.092  Sum_probs=81.8

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      .+.+|.|..+.||+.+.. +.+.+|+....     ....+.+|+.+++.|+.   -.+.+.+.+..  .+..+++|||++
T Consensus        13 ~~~lG~G~fg~Vy~~~~~-~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~H---pnIv~~~~~~~--~~~~~lv~Ey~~   86 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRH---VNILLFMGYST--APQLAIVTQWCE   86 (276)
T ss_dssp             CSEEEECSSCEEEEEESS-SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCC---TTBCCEEEEEC--SSSCEEEEECCC
T ss_pred             EEEEeeCCCcEEEEEEEC-CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCC---CCEeeeeEEEe--ccEEEEEEecCC
Confidence            467899999999999754 56888876531     12456788888877742   23445555543  467899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHHHHH
Q 022304          102 FGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQRGHR  181 (299)
Q Consensus       102 G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (299)
                      |+++       ..   .++.....                      -++....                      ..+.+
T Consensus        87 ~g~L-------~~---~l~~~~~~----------------------~~~~~~~----------------------~i~~q  112 (276)
T d1uwha_          87 GSSL-------YH---HLHIIETK----------------------FEMIKLI----------------------DIARQ  112 (276)
T ss_dssp             EEEH-------HH---HHHTSCCC----------------------CCHHHHH----------------------HHHHH
T ss_pred             CCCH-------HH---HHhhccCC----------------------CCHHHHH----------------------HHHHH
Confidence            8643       11   12322210                      0111100                      11122


Q ss_pred             HHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          182 LMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       182 ~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      ++..+..+..     ..++|+|++|.|||++.++.+.|.||.
T Consensus       113 i~~gl~yLH~-----~~ivHrDlKp~NiLl~~~~~~Kl~DFG  149 (276)
T d1uwha_         113 TAQGMDYLHA-----KSIIHRDLKSNNIFLHEDLTVKIGDFG  149 (276)
T ss_dssp             HHHHHHHHHH-----TTCCCSCCCGGGEEEETTSSEEECCCC
T ss_pred             HHHHHHHHhc-----CCEeccccCHHHEEEcCCCCEEEcccc
Confidence            3333332222     369999999999999988888899975

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.37  E-value=9.5e-07  Score=76.52  Aligned_cols=136  Identities=15%  Similarity=0.111  Sum_probs=80.1

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++... .| .|.+|+...      .....+..|...++.++...--.+.+++..... .+..|++||
T Consensus         9 ~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~-~~~~~ivmE   87 (364)
T d1omwa3           9 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-PDKLSFILD   87 (364)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC-SSEEEEEEC
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE-CCEEEEEEE
Confidence            457888988999999864 34 788897542      122334556666666653211123444444332 568899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+.+       ...+.+   ...    +                   ...      .+.                ..
T Consensus        88 ~~~gg~L-------~~~l~~---~~~----~-------------------~e~------~~~----------------~~  112 (364)
T d1omwa3          88 LMNGGDL-------HYHLSQ---HGV----F-------------------SEA------DMR----------------FY  112 (364)
T ss_dssp             CCCSCBH-------HHHHHH---HCS----C-------------------CHH------HHH----------------HH
T ss_pred             ecCCCcH-------HHHHHh---ccc----c-------------------cHH------HHH----------------HH
Confidence            9999743       222221   111    0                   000      000                11


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.     ...+||+|++|+|||++.++.+.|+||.
T Consensus       113 ~~qi~~aL~ylH-----~~~iiHrDlKP~NILl~~~g~iKl~DFG  152 (364)
T d1omwa3         113 AAEIILGLEHMH-----NRFVVYRDLKPANILLDEHGHVRISDLG  152 (364)
T ss_dssp             HHHHHHHHHHHH-----HTTEECCCCSGGGEEECSSSCEEECCCT
T ss_pred             HHHHHHHHHHHH-----HCCccceeeccceeEEcCCCcEEEeeec
Confidence            122333333332     2578999999999999988888999985

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=98.37  E-value=5.6e-07  Score=77.60  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEeccc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIE  101 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~  101 (299)
                      ++.+|.|..+.||++... .| .|.+|+.....   ...+.+|+.+++.|. +  -.+.+++..... .+..|++|||++
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~-H--pnIv~~~~~~~~-~~~~~ivmE~~~  106 (350)
T d1koaa2          31 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLR-H--PTLVNLHDAFED-DNEMVMIYEFMS  106 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTC-C--TTBCCEEEEEEE-TTEEEEEECCCC
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCC-C--CCCCcEEEEEEE-CCEEEEEEEcCC
Confidence            467899999999999863 34 78899775422   345678999988885 2  245666665443 578999999999


Q ss_pred             CCCC
Q 022304          102 FGSS  105 (299)
Q Consensus       102 G~~~  105 (299)
                      |+.+
T Consensus       107 gg~L  110 (350)
T d1koaa2         107 GGEL  110 (350)
T ss_dssp             SCBH
T ss_pred             CCCH
Confidence            9743

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.6e-07  Score=77.15  Aligned_cols=133  Identities=17%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      ++.+|.|..+.||++... .| .|.+|+...      .....+..|..+++.+. +  --+.+++..... ....|++||
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~-h--p~Iv~l~~~~~~-~~~~~iv~e   85 (337)
T d1o6la_          10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR-H--PFLTALKYAFQT-HDRLCFVME   85 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCC-C--TTBCCEEEEEEC-SSEEEEEEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCC-C--CCEEEEEeeecc-cccccccee
Confidence            567899988999999863 34 788898642      22344667888887764 2  235556654433 568899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      +++|+.+       -..+   .....    +.                 ...        +.                ..
T Consensus        86 y~~gg~L-------~~~~---~~~~~----~~-----------------e~~--------~~----------------~~  110 (337)
T d1o6la_          86 YANGGEL-------FFHL---SRERV----FT-----------------EER--------AR----------------FY  110 (337)
T ss_dssp             CCTTCBH-------HHHH---HHHSC----CC-----------------HHH--------HH----------------HH
T ss_pred             ccCCCch-------hhhh---hcccC----Cc-----------------HHH--------HH----------------HH
Confidence            9999743       1111   11111    00                 000        00                11


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.     ...+||+|++|.|||++.++.+.|+||.
T Consensus       111 ~~qil~al~ylH-----~~~iiHRDlKP~NILl~~~g~vkl~DFG  150 (337)
T d1o6la_         111 GAEIVSALEYLH-----SRDVVYRDIKLENLMLDKDGHIKITDFG  150 (337)
T ss_dssp             HHHHHHHHHHHH-----HTTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             HHHHhhhhhhhh-----hcCccccccCHHHeEecCCCCEEEeecc
Confidence            123333333322     2488999999999999988888999985

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.8e-07  Score=74.26  Aligned_cols=76  Identities=20%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             eeeeCCccccceEEEEeCCccEEEEecCCC-CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCCCC
Q 022304           27 ICPVGGGCINLASRYGTDAGSFFVKTNRSI-GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSS  105 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~-~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~~  105 (299)
                      ++.+|.|..+.||+....+..+.+|..... ....+.+|++.++.++ +  -.+.+++.......+..+++|||++|..+
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~-H--pnIv~~~g~~~~~~~~~~lv~ey~~~g~L   88 (262)
T d1byga_          12 LQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLR-H--SNLVQLLGVIVEEKGGLYIVTEYMAKGSL   88 (262)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCC-C--TTBCCEEEEECCC--CCEEEECCCTTEEH
T ss_pred             eEEEecCCCeEEEEEEECCeEEEEEEECcHHHHHHHHHHHHHHHhCC-C--CCEeeEEEEEEecCCcEEEEEeccCCCCH
Confidence            466888888999999887668999988643 3455788998887773 2  24555665432213567999999999743

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7.4e-07  Score=74.97  Aligned_cols=74  Identities=11%  Similarity=-0.003  Sum_probs=51.1

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC--------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI--------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~--------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .++.+|.|..+.||++... .| .|.+|+....        ....+.+|+.+++.+..   -.+.+++..... .+..++
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~h---pnIv~~~~~~~~-~~~~~i   77 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH---PNIIGLLDAFGH-KSNISL   77 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCC---TTBCCEEEEECC-TTCCEE
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCC---CCEeEEEeeecc-CCceee
Confidence            4677899989999999863 34 6888976421        12346789998888853   245556655433 568899


Q ss_pred             EEecccCC
Q 022304           96 IMEFIEFG  103 (299)
Q Consensus        96 v~e~l~G~  103 (299)
                      +||+.+|.
T Consensus        78 vmE~~~~~   85 (299)
T d1ua2a_          78 VFDFMETD   85 (299)
T ss_dssp             EEECCSEE
T ss_pred             hhhhhcch
Confidence            99999885

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1e-06  Score=74.03  Aligned_cols=74  Identities=19%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             eeeeeCCccccceEEEEe-CCc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGT-DAG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.+|.|..+.||++.. ..| .|.+|+....     ....+.+|+.+++.+..   -.+.+++....+ .+..+++||
T Consensus         6 ~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~H---p~Iv~~~~~~~~-~~~~~iv~e   81 (298)
T d1gz8a_           6 KVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH---PNIVKLLDVIHT-ENKLYLVFE   81 (298)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCC---TTBCCEEEEEEE-TTEEEEEEE
T ss_pred             eccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCC---CcEEEecccccc-ccceeEEEe
Confidence            467899999999999986 344 6778976431     24557789988887752   246666655443 568899999


Q ss_pred             cccCC
Q 022304           99 FIEFG  103 (299)
Q Consensus        99 ~l~G~  103 (299)
                      ++.|.
T Consensus        82 ~~~~~   86 (298)
T d1gz8a_          82 FLHQD   86 (298)
T ss_dssp             CCSEE
T ss_pred             ecCCc
Confidence            99774

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=98.31  E-value=6.7e-07  Score=74.71  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             eeeeeCCccccceEEEEeCCc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEec
Q 022304           26 KICPVGGGCINLASRYGTDAG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF   99 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~   99 (299)
                      -++.+|.|..+.||++...+| .|.+|.....     ....+.+|+.+++.|..   -.+.+++..... .+..++++++
T Consensus         6 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h---pnIv~~~~~~~~-~~~~~i~~e~   81 (286)
T d1ob3a_           6 GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKH---SNIVKLYDVIHT-KKRLVLVFEH   81 (286)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCC---TTBCCEEEEEEC-SSCEEEEEEC
T ss_pred             eccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCC---CcEEeeeeeccc-CCceeEEEEe
Confidence            467899999999999987655 7888976432     23456788888877742   245555544333 5678899998


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      ..|.
T Consensus        82 ~~~~   85 (286)
T d1ob3a_          82 LDQD   85 (286)
T ss_dssp             CSEE
T ss_pred             ehhh
Confidence            8774

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.8e-07  Score=74.20  Aligned_cols=75  Identities=12%  Similarity=0.038  Sum_probs=48.6

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeeccc--C-CCceEEEE
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P-TGGSYIIM   97 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~-~~~~~~v~   97 (299)
                      +.+|.|..+.||++... .+ .+.+|.....     ....+.+|+++++.|. +  -.+.+++.....  . ....+++|
T Consensus        15 ~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          15 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ-H--PNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCC-C--CCeeeEEEEEeeccccCCEEEEEE
Confidence            46899999999999864 34 6677765321     1234678888877774 2  235556654321  1 23568999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|.++
T Consensus        92 E~~~~g~L   99 (270)
T d1t4ha_          92 ELMTSGTL   99 (270)
T ss_dssp             ECCCSCBH
T ss_pred             eCCCCCcH
Confidence            99999743

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=9.6e-07  Score=72.73  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=53.5

Q ss_pred             eeeeCCccccceEEEEeCCc-cEEEEecCC--CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTDAG-SFFVKTNRS--IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~g-~~vlK~~~~--~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      ++.+|.|..+.||+....++ .+.+|.-..  .....+.+|+..+..+..   -.+-+++..... ++..+++|||++++
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~H---pnIv~~~g~~~~-~~~~~iv~Ey~~~g   84 (258)
T d1k2pa_           9 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSH---EKLVQLYGVCTK-QRPIFIITEYMANG   84 (258)
T ss_dssp             CCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCC---TTBCCEEEEECC-SSSEEEEEECCTTE
T ss_pred             eEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCC---CceeeEEEEEee-CCceEEEEEccCCC
Confidence            46789999999999998666 677887653  234567789888877742   245556665433 57889999999986


Q ss_pred             C
Q 022304          104 S  104 (299)
Q Consensus       104 ~  104 (299)
                      .
T Consensus        85 ~   85 (258)
T d1k2pa_          85 C   85 (258)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=8.3e-07  Score=75.08  Aligned_cols=75  Identities=15%  Similarity=0.043  Sum_probs=50.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      .+.+|.|..+.||++... .+ .|.+|+...    .....+.+|+.+++.|. +  --+.+++.+... .+..|++||++
T Consensus        14 ~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~-H--pnIv~l~~~~~~-~~~~~lvmE~~   89 (307)
T d1a06a_          14 RDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIK-H--PNIVALDDIYES-GGHLYLIMQLV   89 (307)
T ss_dssp             EEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCC-C--TTBCCEEEEEEC-SSEEEEEECCC
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEE-CCEEEEEEecc
Confidence            366899999999999864 34 688897643    12344668998888774 2  245666665443 57889999999


Q ss_pred             cCCCC
Q 022304          101 EFGSS  105 (299)
Q Consensus       101 ~G~~~  105 (299)
                      +|+++
T Consensus        90 ~gg~L   94 (307)
T d1a06a_          90 SGGEL   94 (307)
T ss_dssp             CSCBH
T ss_pred             CCCcH
Confidence            98743

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=1.2e-06  Score=75.38  Aligned_cols=134  Identities=17%  Similarity=0.114  Sum_probs=81.9

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      -++.||.|..+.||++... .| .|.+|+...      .....+..|+.+++.+..   -.+.+++..... ....+++|
T Consensus        45 i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~h---pnIv~~~~~~~~-~~~~~~v~  120 (350)
T d1rdqe_          45 RIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF---PFLVKLEFSFKD-NSNLYMVM  120 (350)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCC---TTBCCEEEEEEC-SSEEEEEE
T ss_pred             EEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCC---CcEeeccccccc-cccccccc
Confidence            3578999999999999863 34 788897542      122345678887766632   234455544332 56789999


Q ss_pred             ecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHH
Q 022304           98 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ  177 (299)
Q Consensus        98 e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
                      +++.|..+       ...+.   ....    +.                 .        ..+                ..
T Consensus       121 e~~~~g~l-------~~~l~---~~~~----l~-----------------e--------~~~----------------~~  145 (350)
T d1rdqe_         121 EYVAGGEM-------FSHLR---RIGR----FS-----------------E--------PHA----------------RF  145 (350)
T ss_dssp             ECCTTCBH-------HHHHH---HHCC----CC-----------------H--------HHH----------------HH
T ss_pred             ccccccch-------hhhHh---hcCC----CC-----------------H--------HHH----------------HH
Confidence            99998743       11111   1110    00                 0        000                11


Q ss_pred             HHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          178 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       178 ~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      .+.+++..+..+..     ..+||+|++|.|||++.++.+.|+||.
T Consensus       146 i~~qi~~aL~yLH~-----~~iiHRDIKP~NILl~~~g~ikL~DFG  186 (350)
T d1rdqe_         146 YAAQIVLTFEYLHS-----LDLIYRDLKPENLLIDQQGYIQVTDFG  186 (350)
T ss_dssp             HHHHHHHHHHHHHH-----TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             HHHHHHHHHHHHHh-----CCEecCcCCHHHcccCCCCCEEeeece
Confidence            22233333333322     469999999999999988888999985

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.2e-06  Score=71.79  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCC---------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSI---------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.+|.|..+.||++... +| .|.+|+....         ....+.+|+.+++.|. +  --+.+++..... .+..|+
T Consensus        15 ~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~~~~~~~~-~~~~~i   90 (293)
T d1jksa_          15 GEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-H--PNVITLHEVYEN-KTDVIL   90 (293)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCC-C--TTBCCEEEEEEC-SSEEEE
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCC-C--CCCCcEEEEEEE-CCEEEE
Confidence            467899999999999863 34 7888875321         1245778999998885 3  245667765443 578899


Q ss_pred             EEecccCCCC
Q 022304           96 IMEFIEFGSS  105 (299)
Q Consensus        96 v~e~l~G~~~  105 (299)
                      +|||++|+++
T Consensus        91 v~E~~~gg~L  100 (293)
T d1jksa_          91 ILELVAGGEL  100 (293)
T ss_dssp             EEECCCSCBH
T ss_pred             EEEcCCCccc
Confidence            9999999743

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=1.4e-06  Score=73.25  Aligned_cols=75  Identities=24%  Similarity=0.119  Sum_probs=48.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc----cEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTD-AG----SFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g----~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.+|.|..+.||+.... .+    .+.+|..... .   ...+.+|+.+++.|. |  -.+.+++.+... .+..+++|
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-H--pnIv~l~g~~~~-~~~~~iv~  106 (299)
T d1jpaa_          31 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD-H--PNVIHLEGVVTK-STPVMIIT  106 (299)
T ss_dssp             EEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC-C--TTBCCEEEEECS-SSSCEEEE
T ss_pred             eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC-C--CCCccEEEEEee-CCEEEEEE
Confidence            467899999999998753 22    2445654432 1   234667888887774 2  234556665433 56889999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++|+.+
T Consensus       107 Ey~~~g~L  114 (299)
T d1jpaa_         107 EFMENGSL  114 (299)
T ss_dssp             ECCTTEEH
T ss_pred             EecCCCcc
Confidence            99999743

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.2e-06  Score=70.40  Aligned_cols=78  Identities=17%  Similarity=0.068  Sum_probs=46.9

Q ss_pred             eeeeeeeCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCcc---ceeecccCC---CceEEEE
Q 022304           24 ITKICPVGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPR---PFKVGALPT---GGSYIIM   97 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~---~~~~~~~~~---~~~~~v~   97 (299)
                      ++=-+.+|.|..+.||+.+..+..+.+|............|.+++.. .   .+.-|.   ++.......   ...+++|
T Consensus         5 ~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~~~~~e~ei~~~-~---~~~HpnIv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_           5 IVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQT-V---MLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             EEEEEEEECCSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTS-T---TCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhHHHHHHHHHHH-h---hCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence            44456789999899999987766899998764332223344433321 1   122233   444432211   2568999


Q ss_pred             ecccCCCC
Q 022304           98 EFIEFGSS  105 (299)
Q Consensus        98 e~l~G~~~  105 (299)
                      ||++++++
T Consensus        81 Ey~~~g~L   88 (303)
T d1vjya_          81 DYHEHGSL   88 (303)
T ss_dssp             ECCTTCBH
T ss_pred             ecccCCCH
Confidence            99998744

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.8e-06  Score=70.61  Aligned_cols=134  Identities=19%  Similarity=0.115  Sum_probs=79.2

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.+|.|..+.||++... .+ .|.+|+...      .....+..|...+...-.+  --+.+++..... .+..|++||
T Consensus         7 ~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~h--p~Iv~~~~~~~~-~~~~yivmE   83 (320)
T d1xjda_           7 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH--PFLTHMFCTFQT-KENLFFVME   83 (320)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTC--TTBCCEEEEEEC-SSEEEEEEE
T ss_pred             eeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCC--CcEEEEEEEEcc-CCceeEEEe
Confidence            467888888999999874 34 788898642      1223344565554433233  235556655433 568899999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCChHHHHH
Q 022304           99 FIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQR  178 (299)
Q Consensus        99 ~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |++|+.+       ...+.   ....    +.                 ..        .+                ...
T Consensus        84 y~~~g~L-------~~~i~---~~~~----~~-----------------e~--------~~----------------~~~  108 (320)
T d1xjda_          84 YLNGGDL-------MYHIQ---SCHK----FD-----------------LS--------RA----------------TFY  108 (320)
T ss_dssp             CCTTCBH-------HHHHH---HHSS----CC-----------------HH--------HH----------------HHH
T ss_pred             ecCCCcH-------HHHhh---ccCC----CC-----------------HH--------HH----------------HHH
Confidence            9999743       22222   1110    00                 00        00                011


Q ss_pred             HHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          179 GHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       179 ~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                      +.+++..+..+.     ...++|+|++|.|||+++++...|+|+.
T Consensus       109 ~~qi~~al~ylH-----~~~iiHrDikp~NiL~~~~~~~kl~DFG  148 (320)
T d1xjda_         109 AAEIILGLQFLH-----SKGIVYRDLKLDNILLDKDGHIKIADFG  148 (320)
T ss_dssp             HHHHHHHHHHHH-----HTTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             HHHHHHHHHHHH-----hCCeeeccCcccceeecCCCceeccccc
Confidence            222333333332     2479999999999999988888999974

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.1e-06  Score=70.26  Aligned_cols=138  Identities=12%  Similarity=0.029  Sum_probs=78.2

Q ss_pred             cceeeeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccC---CCc
Q 022304           22 THITKICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP---TGG   92 (299)
Q Consensus        22 ~~~~~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~---~~~   92 (299)
                      .+-.-++.+|.|..+.||++... +| .|.+|+-....    ...+.+|+.+|+.|...   .+.+++......   ...
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp---~iv~~~~~~~~~~~~~~~   84 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE---NIIGINDIIRAPTIEQMK   84 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCT---TBCCCCEEECCSSTTTCC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCC---CCCcEEEEEeeccccccc
Confidence            34445689999999999999763 44 67789765321    23456899999998642   233444433221   234


Q ss_pred             eEEEEecccCCCCCCcHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhhHHHHHHHHhhcCC
Q 022304           93 SYIIMEFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGD  172 (299)
Q Consensus        93 ~~~v~e~l~G~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (299)
                      .+++++++.|..+       ...+..   ..     +                   .+.      .+             
T Consensus        85 ~~~l~~~~~~g~L-------~~~l~~---~~-----l-------------------~~~------~i-------------  111 (345)
T d1pmea_          85 DVYLVTHLMGADL-------YKLLKT---QH-----L-------------------SND------HI-------------  111 (345)
T ss_dssp             CEEEEEECCCEEH-------HHHHHH---CC-----C-------------------CHH------HH-------------
T ss_pred             eEEEEEeecCCch-------hhhhhc---CC-----C-------------------CHH------HH-------------
Confidence            4566666766532       222211   01     0                   000      01             


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCCcceeccCCCCCCeeecCCCCeEEEccc
Q 022304          173 STIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPA  223 (299)
Q Consensus       173 ~~~~~~~~~~~~~l~~~l~~~~~~~~liHgDl~~~Nvl~~~~~~~~iID~~  223 (299)
                         ...+.+++..+..+.     ...+||+|++|+|||+++++.+.|.|+.
T Consensus       112 ---~~i~~qil~al~yLH-----~~~iiHRDIKp~NILl~~~~~~kl~DfG  154 (345)
T d1pmea_         112 ---CYFLYQILRGLKYIH-----SANVLHRDLKPSNLLLNTTCDLKICDFG  154 (345)
T ss_dssp             ---HHHHHHHHHHHHHHH-----HTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             ---HHHHHHHHHHHHHHH-----HCCCcCCCCCcceEEECCCCCEEEcccC
Confidence               112223333333332     2489999999999999988878899974

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.2e-06  Score=71.31  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=51.0

Q ss_pred             ceeeee--eeCCccccceEEEEeCC---c-cEEEEecCCC--C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKIC--PVGGGCINLASRYGTDA---G-SFFVKTNRSI--G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~--~~~~G~~n~~y~v~~~~---g-~~vlK~~~~~--~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ....++  .+|.|..+.||+....+   + .+.+|+-...  .   ...+.+|+.+++.|. +  -.+.+++....  .+
T Consensus         6 ~~~~le~k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~~~g~~~--~~   80 (277)
T d1xbba_           6 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLD-N--PYIVRMIGICE--AE   80 (277)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCC-C--TTBCCEEEEEE--SS
T ss_pred             hhCeecCCCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCC-C--CCCceEEEEec--cC
Confidence            334454  59999999999986422   2 5778876431  1   245678998888774 2  24556666543  35


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++|||++|+++
T Consensus        81 ~~~lvmE~~~~g~L   94 (277)
T d1xbba_          81 SWMLVMEMAELGPL   94 (277)
T ss_dssp             SEEEEEECCTTEEH
T ss_pred             CEEEEEEcCCCCcH
Confidence            67899999998743

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.4e-06  Score=70.42  Aligned_cols=71  Identities=14%  Similarity=0.045  Sum_probs=48.8

Q ss_pred             eeCCccccceEEEEe---CCc-cEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecc
Q 022304           29 PVGGGCINLASRYGT---DAG-SFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI  100 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~---~~g-~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l  100 (299)
                      ++|.|..+.||+...   .++ .+.+|.-... .   ...+.+|+.+++.|. +  -.+.+++.+..  .+..+++|||+
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~l~g~~~--~~~~~lvmE~~   90 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD-N--PYIVRLIGVCQ--AEALMLVMEMA   90 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCC-C--TTBCCEEEEEE--SSSEEEEEECC
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCC-C--CCEeeEeeeec--cCeEEEEEEeC
Confidence            489999999999754   223 4667875432 1   244678999998885 3  24566666554  35689999999


Q ss_pred             cCCC
Q 022304          101 EFGS  104 (299)
Q Consensus       101 ~G~~  104 (299)
                      +|++
T Consensus        91 ~~g~   94 (285)
T d1u59a_          91 GGGP   94 (285)
T ss_dssp             TTEE
T ss_pred             CCCc
Confidence            9874

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=2.9e-06  Score=71.30  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=54.0

Q ss_pred             ceeeeeeeCCccccceEEEEeC------Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      +..-++.+|.|..+.||+.+..      ++ .+.||.-....    ...+.+|+.+++.|..   -.+.+++..... .+
T Consensus        14 ~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h---~niv~~~~~~~~-~~   89 (301)
T d1lufa_          14 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDN---PNIVKLLGVCAV-GK   89 (301)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEECS-SS
T ss_pred             HcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCC---CCcccceeeecc-CC
Confidence            4556788999999999999752      22 57788765422    2447789888887743   234445554433 56


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++|++++++.+
T Consensus        90 ~~~~v~e~~~~g~L  103 (301)
T d1lufa_          90 PMCLLFEYMAYGDL  103 (301)
T ss_dssp             SCEEEEECCTTCBH
T ss_pred             ceEEEEEecCCCcH
Confidence            88999999998743

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.2e-06  Score=70.00  Aligned_cols=76  Identities=12%  Similarity=0.022  Sum_probs=53.5

Q ss_pred             eeeeCCccccceEEEEeC----Cc-cEEEEecCC-------CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           27 ICPVGGGCINLASRYGTD----AG-SFFVKTNRS-------IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~----~g-~~vlK~~~~-------~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ++.||.|..+.||++...    .| .|.+|+...       .....+..|+.+++.|..+  --+.+++..-.. ....+
T Consensus        29 ~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~--pnIv~~~~~~~~-~~~~~  105 (322)
T d1vzoa_          29 LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQS--PFLVTLHYAFQT-ETKLH  105 (322)
T ss_dssp             EEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTC--TTBCCEEEEEEE-TTEEE
T ss_pred             EEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCC--CeEEEeeeeecc-CCcee
Confidence            578999999999999752    23 688897542       1234567899999999764  235555554333 56889


Q ss_pred             EEEecccCCCC
Q 022304           95 IIMEFIEFGSS  105 (299)
Q Consensus        95 ~v~e~l~G~~~  105 (299)
                      ++||+..|..+
T Consensus       106 ~v~e~~~~~~L  116 (322)
T d1vzoa_         106 LILDYINGGEL  116 (322)
T ss_dssp             EEECCCCSCBH
T ss_pred             eeeecccccHH
Confidence            99999998743

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=9.8e-06  Score=67.81  Aligned_cols=74  Identities=16%  Similarity=0.042  Sum_probs=52.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCC-CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEecccCC
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRS-IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG  103 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~-~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~  103 (299)
                      .+.+|.|..+.||++... +| .+.+|+... .....+..|.++++.+..+  -.++.+...... .+..+++|+++.|.
T Consensus        12 ~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~--~~i~~~~~~~~~-~~~~~ivme~~~~~   88 (299)
T d1ckia_          12 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGG--VGIPTIRWCGAE-GDYNVMVMELLGPS   88 (299)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTS--TTCCCEEEEEEE-TTEEEEEEECCCCB
T ss_pred             eEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCC--CcccEEEEEEec-CCEEEEEEEEcCCc
Confidence            467899999999999753 34 778897653 2345678899999888653  335555544333 56789999998664

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.1e-06  Score=68.36  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=46.7

Q ss_pred             ceeeeeeeCCccccceEEEEeC------Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      +..=.+.+|.|..+.||+.+..      .+ .+.+|.-....    ...+..|...+..+..+  -.+...+........
T Consensus        14 ~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h--~~iv~~~~~~~~~~~   91 (299)
T d1ywna1          14 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH--LNVVNLLGACTKPGG   91 (299)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECSTTS
T ss_pred             HEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCC--CeEEEeeeeeccCCC
Confidence            3444578999988999998742      12 46778765321    12344566666666443  223333333222135


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++|||++|+.+
T Consensus        92 ~~~iv~E~~~~g~L  105 (299)
T d1ywna1          92 PLMVIVEFCKFGNL  105 (299)
T ss_dssp             CCEEEEECCTTCBH
T ss_pred             eEEEEEEecCCCcH
Confidence            67999999999743

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=6.5e-06  Score=68.50  Aligned_cols=75  Identities=24%  Similarity=0.157  Sum_probs=48.2

Q ss_pred             eeeeeeCCccccceEEEEeCC--c----cEEEEecCCC-C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceE
Q 022304           25 TKICPVGGGCINLASRYGTDA--G----SFFVKTNRSI-G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSY   94 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~~~--g----~~vlK~~~~~-~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~   94 (299)
                      ....-+|.|..+.||+.....  +    .+.+|..... .   ...+.+|+.+++.|+.   -.+.+++.+... .+..+
T Consensus        10 ~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H---~nIv~~~g~~~~-~~~~~   85 (283)
T d1mqba_          10 TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH---HNIIRLEGVISK-YKPMM   85 (283)
T ss_dssp             EEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCC---TTBCCEEEEECS-SSSEE
T ss_pred             EeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCC---CCEeeeeEEEec-CCceE
Confidence            334557888889999976432  1    4777876532 1   2346678888877742   234555555433 46789


Q ss_pred             EEEecccCC
Q 022304           95 IIMEFIEFG  103 (299)
Q Consensus        95 ~v~e~l~G~  103 (299)
                      ++||++++.
T Consensus        86 ~v~e~~~~~   94 (283)
T d1mqba_          86 IITEYMENG   94 (283)
T ss_dssp             EEEECCTTE
T ss_pred             EEEEecccC
Confidence            999999885

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.1e-05  Score=68.00  Aligned_cols=98  Identities=14%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             cccCCcchHHHHHHhcCCCcc--eeee-eeeCCccccceEEEEeCC--c---cEEEEecCCC----CcchHHHHHHHHHH
Q 022304            3 VAALSDDPIREWILSEGKATH--ITKI-CPVGGGCINLASRYGTDA--G---SFFVKTNRSI----GPSMFEGEALGLGA   70 (299)
Q Consensus         3 ~~~~~~~~i~~~l~~~~~~~~--~~~~-~~~~~G~~n~~y~v~~~~--g---~~vlK~~~~~----~~~~~~~E~~~l~~   70 (299)
                      +++++++.+.+. ++...+..  .... +.+|.|..+.||+.+..+  +   .+.+|.....    ....+.+|++++..
T Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~   84 (311)
T d1r0pa_           6 LSALNPELVQAV-QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD   84 (311)
T ss_dssp             GGGSCHHHHHHH-GGGBCCGGGEEEEEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred             cccCCHHHHHHh-hceEeChHHceeccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHh
Confidence            566666665555 44422222  2222 357999999999987532  2   3556765431    12457788888877


Q ss_pred             HHhcCCCCCccceeecccCCCceEEEEecccCCC
Q 022304           71 MYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGS  104 (299)
Q Consensus        71 L~~~~~~~vP~~~~~~~~~~~~~~~v~e~l~G~~  104 (299)
                      |. +  -.+.+++.+....++..+++|||++|..
T Consensus        85 l~-H--pnIv~~~g~~~~~~~~~~lv~E~~~~g~  115 (311)
T d1r0pa_          85 FS-H--PNVLSLLGICLRSEGSPLVVLPYMKHGD  115 (311)
T ss_dssp             CC-C--TTBCCCCEEEEETTTEEEEEEECCTTCB
T ss_pred             CC-C--CCEeEEeEEEEecCCceEEEEEEeecCc
Confidence            74 2  2455555544322567899999999963

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7.8e-06  Score=68.03  Aligned_cols=74  Identities=18%  Similarity=0.069  Sum_probs=49.7

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCC-----CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSI-----GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~-----~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      -++.+|.|..+.||+++.. ++ .|.+|+....     ....+.+|+.+++.+..   -.+.+++..... ....+++++
T Consensus         6 ~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h---~niv~~~~~~~~-~~~~~iv~~   81 (292)
T d1unla_           6 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH---KNIVRLHDVLHS-DKKLTLVFE   81 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCC---TTBCCEEEEEEC-SSEEEEEEE
T ss_pred             eeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCc---CCEEeecccccc-ccceeEEee
Confidence            4578999988999999863 34 5788986421     12456788888777643   234555544332 467788999


Q ss_pred             cccCC
Q 022304           99 FIEFG  103 (299)
Q Consensus        99 ~l~G~  103 (299)
                      +..|.
T Consensus        82 ~~~~~   86 (292)
T d1unla_          82 FCDQD   86 (292)
T ss_dssp             CCSEE
T ss_pred             ecccc
Confidence            98875

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.1e-05  Score=69.09  Aligned_cols=74  Identities=15%  Similarity=-0.002  Sum_probs=47.8

Q ss_pred             eeeeCCccccceEEEEe-CCc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeeccc----CCCceEE
Q 022304           27 ICPVGGGCINLASRYGT-DAG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGAL----PTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~----~~~~~~~   95 (299)
                      ++.+|.|..+.||++.. .+| .|.+|+.....     ...+.+|+.+++.|...   .+.+++.....    ..+..++
T Consensus        23 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~---~iv~~~~~~~~~~~~~~~~~~~   99 (348)
T d2gfsa1          23 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE---NVIGLLDVFTPARSLEEFNDVY   99 (348)
T ss_dssp             EEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCT---TBCCCSEEECSCSSTTTCCCCE
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCC---CeeeEEEEEeeccccccCceEE
Confidence            57899999999999985 345 78889875421     13456899999888532   23344433211    1345567


Q ss_pred             EEecccCC
Q 022304           96 IMEFIEFG  103 (299)
Q Consensus        96 v~e~l~G~  103 (299)
                      +++++.|.
T Consensus       100 i~~~~~gg  107 (348)
T d2gfsa1         100 LVTHLMGA  107 (348)
T ss_dssp             EEEECCSE
T ss_pred             EEEeecCC
Confidence            77788776

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1e-05  Score=68.16  Aligned_cols=75  Identities=15%  Similarity=0.162  Sum_probs=51.0

Q ss_pred             eeeeCCccccceEEEEeC------Cc-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEE
Q 022304           27 ICPVGGGCINLASRYGTD------AG-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYI   95 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~------~g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~   95 (299)
                      .+.||.|....||+.+..      .+ .+.+|.-....    ...+..|...+..|.++  -.+-+++..... ....++
T Consensus        28 ~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~H--pnIv~~~g~~~~-~~~~~l  104 (311)
T d1t46a_          28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNH--MNIVNLLGACTI-GGPTLV  104 (311)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECS-SSSCEE
T ss_pred             eeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCC--CCEEEEEEEEee-CCEEEE
Confidence            467899999999998741      22 57788765421    23466788888888554  234455555443 467899


Q ss_pred             EEecccCCC
Q 022304           96 IMEFIEFGS  104 (299)
Q Consensus        96 v~e~l~G~~  104 (299)
                      +|||++|..
T Consensus       105 vmE~~~~g~  113 (311)
T d1t46a_         105 ITEYCCYGD  113 (311)
T ss_dssp             EEECCTTEE
T ss_pred             EEEcCCCCC
Confidence            999999974

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.4e-05  Score=68.56  Aligned_cols=73  Identities=8%  Similarity=-0.041  Sum_probs=48.1

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc----C-CCceEEEEec
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL----P-TGGSYIIMEF   99 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~----~-~~~~~~v~e~   99 (299)
                      +..+|.|..+.||++... .| .|.+|...... ....+|+++++.|..   -.+.+++..-..    . ....+++||+
T Consensus        25 ~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~-~~~~~Ei~il~~l~h---~niv~~~~~~~~~~~~~~~~~~~lv~Ey  100 (350)
T d1q5ka_          25 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-RFKNRELQIMRKLDH---CNIVRLRYFFYSSGEKKDEVYLNLVLDY  100 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-SSCCHHHHHHHHCCC---TTBCCEEEEEEEC--CCSCCEEEEEEEC
T ss_pred             eeEEeeCcCeEEEEEEECCCCCEEEEEEECccc-hHHHHHHHHHHhcCC---CCCCcEEEEEEecCccCCceEEEEEEec
Confidence            456899989999999874 34 67888775432 334579999988853   234555543211    1 2346899999


Q ss_pred             ccCC
Q 022304          100 IEFG  103 (299)
Q Consensus       100 l~G~  103 (299)
                      ++|.
T Consensus       101 ~~~~  104 (350)
T d1q5ka_         101 VPET  104 (350)
T ss_dssp             CSEE
T ss_pred             cCCc
Confidence            9874

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.1e-06  Score=72.56  Aligned_cols=76  Identities=16%  Similarity=0.131  Sum_probs=50.3

Q ss_pred             eeeeCCccccceEEEEeC-Cc-c--EEEEecCC----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEEe
Q 022304           27 ICPVGGGCINLASRYGTD-AG-S--FFVKTNRS----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIME   98 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~--~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~e   98 (299)
                      .+.+|.|..+.||+.+.. ++ .  +.+|....    .....+.+|+.++..|.++  -.+.+++..... .+..+++||
T Consensus        15 ~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~H--pnIv~~~~~~~~-~~~~~iV~e   91 (309)
T d1fvra_          15 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH--PNIINLLGACEH-RGYLYLAIE   91 (309)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCC--TTBCCEEEEEEE-TTEEEEEEC
T ss_pred             EEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCC--CCEeeEEEEEec-CCeeEEEEE
Confidence            367899999999998753 33 2  33444322    2345578899888877544  245566665443 578899999


Q ss_pred             cccCCCC
Q 022304           99 FIEFGSS  105 (299)
Q Consensus        99 ~l~G~~~  105 (299)
                      |++|+++
T Consensus        92 y~~~g~L   98 (309)
T d1fvra_          92 YAPHGNL   98 (309)
T ss_dssp             CCTTCBH
T ss_pred             ecCCCcH
Confidence            9999754

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.5e-06  Score=70.27  Aligned_cols=72  Identities=15%  Similarity=-0.011  Sum_probs=49.8

Q ss_pred             eeCCccccceEEEEe-CCc-cEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeeccc--C-CCceEEEEecccCC
Q 022304           29 PVGGGCINLASRYGT-DAG-SFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL--P-TGGSYIIMEFIEFG  103 (299)
Q Consensus        29 ~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~--~-~~~~~~v~e~l~G~  103 (299)
                      .+|.|..+.||++.. ..+ .|.+|+-..  ...+++|..++..+.++  -.+.+++..-..  . ....|++|||++|+
T Consensus        19 ~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~--~~~~~~E~~~~~~~~~h--pnIv~l~~~~~~~~~~~~~~~ivmEy~~gg   94 (335)
T d2ozaa1          19 VLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQC--PHIVRIVDVYENLYAGRKCLLIVMECLDGG   94 (335)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTS--TTBCCEEEEEEEEETTEEEEEEEEECCCSE
T ss_pred             EeeeccCeEEEEEEECCCCCEEEEEEECC--cHHHHHHHHHHHHhcCC--CCCCeEEEEEeecccCCCEEEEEEECCCCC
Confidence            388898899999986 334 788998754  34577898887666544  245666654221  1 24679999999997


Q ss_pred             C
Q 022304          104 S  104 (299)
Q Consensus       104 ~  104 (299)
                      +
T Consensus        95 ~   95 (335)
T d2ozaa1          95 E   95 (335)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.3e-05  Score=67.23  Aligned_cols=76  Identities=17%  Similarity=0.086  Sum_probs=45.3

Q ss_pred             eeeeCCccccceEEEEeCC--------c-cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           27 ICPVGGGCINLASRYGTDA--------G-SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--------g-~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      .+.+|.|..+.||+++...        + .|.+|......    ...+..|...+..+..+  -.+.+++..... ++..
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~H--pnIv~~~~~~~~-~~~~   94 (299)
T d1fgka_          18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH--KNIINLLGACTQ-DGPL   94 (299)
T ss_dssp             EEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCC--TTBCCEEEEECS-SSSC
T ss_pred             eeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCC--CeEEeccccccc-CCeE
Confidence            4678999999999987421        1 46788775432    23456677777777544  234445544332 5789


Q ss_pred             EEEEecccCCCC
Q 022304           94 YIIMEFIEFGSS  105 (299)
Q Consensus        94 ~~v~e~l~G~~~  105 (299)
                      +++|||++|+.+
T Consensus        95 ~~v~e~~~~g~l  106 (299)
T d1fgka_          95 YVIVEYASKGNL  106 (299)
T ss_dssp             EEEECCCTTCBH
T ss_pred             EEEEEccCCCcH
Confidence            999999999743

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.4e-05  Score=66.09  Aligned_cols=74  Identities=12%  Similarity=-0.098  Sum_probs=50.8

Q ss_pred             eeeCCccccceEEEEeC-Cc-cEEEEecCCC---------CcchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEE
Q 022304           28 CPVGGGCINLASRYGTD-AG-SFFVKTNRSI---------GPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYII   96 (299)
Q Consensus        28 ~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~---------~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v   96 (299)
                      +.+|.|..+.||+.... +| .+.+|.....         ....+..|..+++.+... --.+.+++..... .+..+++
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~-h~nIv~~~~~~~~-~~~~~lv   87 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG-FSGVIRLLDWFER-PDSFVLI   87 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSS-SCSBCCEEEEEEC-SSEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccC-CCCccEEEEEEee-CCeEEEE
Confidence            56888988999998863 34 7888965321         123356899999988631 1235666665443 5688999


Q ss_pred             EecccCC
Q 022304           97 MEFIEFG  103 (299)
Q Consensus        97 ~e~l~G~  103 (299)
                      ||+..|.
T Consensus        88 ~e~~~~~   94 (273)
T d1xwsa_          88 LERPEPV   94 (273)
T ss_dssp             EECCSSE
T ss_pred             EEeccCc
Confidence            9999874

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.1e-05  Score=68.07  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeecccC-------CC
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALP-------TG   91 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-------~~   91 (299)
                      -+..+|.|..+.||++... +| .|.||+...     .....+.+|+.+++.|...   .+.+.+......       .+
T Consensus        14 i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~---nii~~~~~~~~~~~~~~~~~~   90 (318)
T d3blha1          14 KLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE---NVVNLIEICRTKASPYNRCKG   90 (318)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCT---TBCCEEEEEEC----------
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCC---CccceEeeeecccccccccCc
Confidence            4578999999999999863 44 688897542     1234467899999988532   333444321110       34


Q ss_pred             ceEEEEecccCC
Q 022304           92 GSYIIMEFIEFG  103 (299)
Q Consensus        92 ~~~~v~e~l~G~  103 (299)
                      ..+++||++++.
T Consensus        91 ~~~iv~e~~~~~  102 (318)
T d3blha1          91 SIYLVFDFCEHD  102 (318)
T ss_dssp             CEEEEEECCCEE
T ss_pred             eEEEEEeccCCC
Confidence            678999998765

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.9e-05  Score=64.08  Aligned_cols=74  Identities=19%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             eeeeeeCCccccceEEEEe--CCc---cEEEEecCCC---C---cchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           25 TKICPVGGGCINLASRYGT--DAG---SFFVKTNRSI---G---PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        25 ~~~~~~~~G~~n~~y~v~~--~~g---~~vlK~~~~~---~---~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      .=++.+|.|..+.||+...  ..+   .+.+|+....   .   ...+.+|+.+++.|. +  -.+.+++....  ++..
T Consensus        11 ~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~-H--~nIv~~~g~~~--~~~~   85 (273)
T d1u46a_          11 RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD-H--RNLIRLYGVVL--TPPM   85 (273)
T ss_dssp             EEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCC-C--TTBCCEEEEEC--SSSC
T ss_pred             EEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCC-C--CCEEEEEEEEe--ecch
Confidence            3357899999999999864  222   4667865431   1   234678888888884 3  34556665543  3567


Q ss_pred             EEEEecccCC
Q 022304           94 YIIMEFIEFG  103 (299)
Q Consensus        94 ~~v~e~l~G~  103 (299)
                      +++|||.++.
T Consensus        86 ~lv~e~~~~~   95 (273)
T d1u46a_          86 KMVTELAPLG   95 (273)
T ss_dssp             EEEEECCTTC
T ss_pred             heeeeeecCc
Confidence            8999999986

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.4e-05  Score=64.50  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             eeeeCCccccceEEEEe-C-Ccc-EEEEecCC-----CCcchHHHHHHHHHHHHhcCCCCCccceeeccc---C-CCceE
Q 022304           27 ICPVGGGCINLASRYGT-D-AGS-FFVKTNRS-----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGAL---P-TGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~-~-~g~-~vlK~~~~-----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~---~-~~~~~   94 (299)
                      ++.+|.|..+.||++.. . +++ +.+|+...     .......+|+.+++.|+...--.+.+++.....   . .+..+
T Consensus        12 ~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~   91 (305)
T d1blxa_          12 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT   91 (305)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred             EEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEE
Confidence            56899999999999975 2 345 55787532     123456789999999974211234555543211   1 34678


Q ss_pred             EEEecccCC
Q 022304           95 IIMEFIEFG  103 (299)
Q Consensus        95 ~v~e~l~G~  103 (299)
                      ++||+++|.
T Consensus        92 ~~~e~~~~~  100 (305)
T d1blxa_          92 LVFEHVDQD  100 (305)
T ss_dssp             EEEECCSCB
T ss_pred             EEEEeccCC
Confidence            999999885

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.2e-05  Score=65.98  Aligned_cols=79  Identities=19%  Similarity=0.142  Sum_probs=49.8

Q ss_pred             ceeeeeeeCCccccceEEEEeC-------CccEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCC
Q 022304           23 HITKICPVGGGCINLASRYGTD-------AGSFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTG   91 (299)
Q Consensus        23 ~~~~~~~~~~G~~n~~y~v~~~-------~g~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~   91 (299)
                      ++.-.+.||.|..+.||+.+..       +..+.+|......    ...+.+|+.+++.+..   -.+.+++..... .+
T Consensus        21 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h---~nIv~~~~~~~~-~~   96 (308)
T d1p4oa_          21 KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNC---HHVVRLLGVVSQ-GQ   96 (308)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCC---TTBCCEEEEECS-SS
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCC---CCEeeeeeEEec-CC
Confidence            4445678999988999997642       1267888765421    1235577766665532   134444444332 56


Q ss_pred             ceEEEEecccCCCC
Q 022304           92 GSYIIMEFIEFGSS  105 (299)
Q Consensus        92 ~~~~v~e~l~G~~~  105 (299)
                      ..+++||+++++.+
T Consensus        97 ~~~lv~e~~~~g~l  110 (308)
T d1p4oa_          97 PTLVIMELMTRGDL  110 (308)
T ss_dssp             SCEEEEECCTTCBH
T ss_pred             ceeEEEeecCCCCH
Confidence            78999999999743

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2e-05  Score=64.99  Aligned_cols=73  Identities=19%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             eeeeCCccccceEEEEeCC--c---cEEEEecCCCC----cchHHHHHHHHHHHHhcCCCCCccceeecccCCCceEEEE
Q 022304           27 ICPVGGGCINLASRYGTDA--G---SFFVKTNRSIG----PSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIM   97 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~~--g---~~vlK~~~~~~----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~~~v~   97 (299)
                      .+.+|.|..+.||+.....  +   .+.+|......    ...+.+|+.+++.|. +  -.+.+++....  ++..+++|
T Consensus        12 ~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~-H--pnIv~l~~~~~--~~~~~iv~   86 (273)
T d1mp8a_          12 GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD-H--PHIVKLIGVIT--ENPVWIIM   86 (273)
T ss_dssp             EEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCC-C--TTBCCEEEEEC--SSSCEEEE
T ss_pred             EEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCC-C--CCEeeEEEEEe--cCeEEEEE
Confidence            4678999899999986422  2   35566554321    244667888877774 2  23455665443  46789999


Q ss_pred             ecccCCC
Q 022304           98 EFIEFGS  104 (299)
Q Consensus        98 e~l~G~~  104 (299)
                      |+++|+.
T Consensus        87 E~~~~g~   93 (273)
T d1mp8a_          87 ELCTLGE   93 (273)
T ss_dssp             ECCTTEE
T ss_pred             EeccCCc
Confidence            9999863

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3e-05  Score=65.40  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             eeeeeeeCCccccceEEEEeC-Cc-----cEEEEecCC----CCcchHHHHHHHHHHHHhcCCCCCccceeecccCCCce
Q 022304           24 ITKICPVGGGCINLASRYGTD-AG-----SFFVKTNRS----IGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGS   93 (299)
Q Consensus        24 ~~~~~~~~~G~~n~~y~v~~~-~g-----~~vlK~~~~----~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~~~~~   93 (299)
                      ..-++.+|.|..+.||+.... +|     ++.+|....    .....+.+|+.+++.|. |  -.+.+++....  .+..
T Consensus        11 y~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-H--pnIv~l~g~~~--~~~~   85 (317)
T d1xkka_          11 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD-N--PHVCRLLGICL--TSTV   85 (317)
T ss_dssp             EEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCC-C--TTBCCEEEEEE--SSSE
T ss_pred             CEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCC-C--CCEeeEEEEEe--cCCe
Confidence            445678999999999998752 33     467775432    12345778999998884 3  24556666554  3567


Q ss_pred             EEEEecccCCC
Q 022304           94 YIIMEFIEFGS  104 (299)
Q Consensus        94 ~~v~e~l~G~~  104 (299)
                      ++++++..+..
T Consensus        86 ~~v~e~~~~~~   96 (317)
T d1xkka_          86 QLITQLMPFGC   96 (317)
T ss_dssp             EEEEECCTTCB
T ss_pred             eEEEEeccCCc
Confidence            88899888763

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.7e-05  Score=63.50  Aligned_cols=73  Identities=18%  Similarity=0.101  Sum_probs=42.3

Q ss_pred             eeeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCce
Q 022304           26 KICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGS   93 (299)
Q Consensus        26 ~~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~   93 (299)
                      -++.+|.|..+.||++... .| .|.+|+.....     ...+.+|+.+++.|..   -.+.+++......     ....
T Consensus        22 ~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h---pniv~l~~~~~~~~~~~~~~~~   98 (346)
T d1cm8a_          22 DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRH---ENVIGLLDVFTPDETLDDFTDF   98 (346)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCB---TTBCCCSEEECSCSSTTTCCCC
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCC---CCeeEEEEEeccCccccccceE
Confidence            4678999999999999853 35 67889875321     1345678988888853   1344555432221     2356


Q ss_pred             EEEEeccc
Q 022304           94 YIIMEFIE  101 (299)
Q Consensus        94 ~~v~e~l~  101 (299)
                      +++||++.
T Consensus        99 ~lv~e~~~  106 (346)
T d1cm8a_          99 YLVMPFMG  106 (346)
T ss_dssp             EEEEECCS
T ss_pred             EEEEeccc
Confidence            99999983

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7.6e-05  Score=63.86  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             eeeeCCccccceEEEEeC-Cc-cEEEEecCCCC-----cchHHHHHHHHHHHHhcCCCCCccceeecccC-----CCceE
Q 022304           27 ICPVGGGCINLASRYGTD-AG-SFFVKTNRSIG-----PSMFEGEALGLGAMYETRTIRAPRPFKVGALP-----TGGSY   94 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~~-~g-~~vlK~~~~~~-----~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~~~-----~~~~~   94 (299)
                      +..+|.|..+.||++... .| .|.+|+.....     ...+.+|..+++.+. +  -.+.+.+..-...     ....|
T Consensus        22 ~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~-h--pnIv~~~~~f~~~~~~~~~~~~~   98 (355)
T d2b1pa1          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN-H--KNIISLLNVFTPQKTLEEFQDVY   98 (355)
T ss_dssp             EEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCC-C--TTBCCCSEEECSCCSTTTCCEEE
T ss_pred             EEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcC-C--CCeeEEEEEEecccccccCceeE
Confidence            578999999999999853 34 78889875321     134668888887774 2  2344445432211     35779


Q ss_pred             EEEecccCC
Q 022304           95 IIMEFIEFG  103 (299)
Q Consensus        95 ~v~e~l~G~  103 (299)
                      ++||++.|.
T Consensus        99 iv~Ey~~~~  107 (355)
T d2b1pa1          99 LVMELMDAN  107 (355)
T ss_dssp             EEEECCSEE
T ss_pred             EEEeccchH
Confidence            999999875

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.0013  Score=55.83  Aligned_cols=47  Identities=15%  Similarity=-0.007  Sum_probs=35.6

Q ss_pred             eeeeCCccccceEEEEe-CCc-cEEEEecCCC--CcchHHHHHHHHHHHHh
Q 022304           27 ICPVGGGCINLASRYGT-DAG-SFFVKTNRSI--GPSMFEGEALGLGAMYE   73 (299)
Q Consensus        27 ~~~~~~G~~n~~y~v~~-~~g-~~vlK~~~~~--~~~~~~~E~~~l~~L~~   73 (299)
                      ++.+|.|..+.||++.. .+| .|.||+....  .......|..+++.+..
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~   68 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVND   68 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcc
Confidence            67899999999999986 344 7888987643  12456789999998875

>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Actin-fragmin kinase, catalytic domain
domain: Actin-fragmin kinase, catalytic domain
species: Physarum polycephalum [TaxId: 5791]

Probab=93.83  E-value=0.21  Score=40.52  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             eCCccccceEEEEeCCccEEEEecCCCCcchHHHHHHHHHHHHhcCCCCCccceeecc------------------cC--
Q 022304           30 VGGGCINLASRYGTDAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGA------------------LP--   89 (299)
Q Consensus        30 ~~~G~~n~~y~v~~~~g~~vlK~~~~~~~~~~~~E~~~l~~L~~~~~~~vP~~~~~~~------------------~~--   89 (299)
                      ++.+.+-.|+.|.+++|.+|+|....     ++.|.-.. .|+...++|||+..-...                  ..  
T Consensus        76 ~s~~Gs~Gv~FV~~e~gaiVlK~s~t-----ta~E~y~~-eLAr~LGvpvPqmRvI~~~~~E~~~~~~~~l~~~e~d~~I  149 (342)
T d1cjaa_          76 RSEKGTEGLFFVETESGVFIVKRSTN-----IESETFCS-LLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFRVI  149 (342)
T ss_dssp             ECCSTTSCEEEEEESSCEEEEECCTT-----HHHHHHHH-HHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSSSCHH
T ss_pred             EeecCCceEEEEEcCCceEEEecCCc-----hHHHHHHH-HHHHHhCCCCCceEEecCCCHHHHHHHHHHhcCCChhHHH
Confidence            33344456888999999999999653     45565544 444555899998764431                  00  


Q ss_pred             ----CCceEEEEecccCCCC
Q 022304           90 ----TGGSYIIMEFIEFGSS  105 (299)
Q Consensus        90 ----~~~~~~v~e~l~G~~~  105 (299)
                          ....+++|+|++|.++
T Consensus       150 ~sel~~A~~liMeYvpG~~l  169 (342)
T d1cjaa_         150 TTLANQANILLMELVRGITL  169 (342)
T ss_dssp             HHHTTCSEEEEEECCCEEES
T ss_pred             HHHHhcccceeeeccCCccc
Confidence                2457899999999765