Citrus Sinensis ID: 022308

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
cccccEEccccHHHHHHcccccccccccccEEcccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccccEEccccccccccEEEcccEEccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEEEEcccEEEEEEEEEEEccccccccEEEEEEEcccccEEEEEEEccEEEEEEEccEEEEEEcccccccccEEEEEEEEcccccccccccEEEEEEEEcEEEEcccEEEEEEEEcccccccccEEEEEEcccEEEcc
ccccccccccHHHHHHHHccccccHHHHEcccccccccccccccccHcccccccccccEEcccEEEEEEHHHEEEEEcccccEEEEEEEEEEEEEEEEccccccEEcccccEEEccccEcccEEEcccccccEEEEccccccEEEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEccccccccEEEEcEEEEEEccccEEEEEEcEcccccEEEEEEEEEcccccccccccccEEEEEEEEEEEEccEEEEEEEEEccccccccEEEEEEccccEEEEc
midngfplttepnilremiappniVSKMLSVVtgnssnvsdilpgatascvpwrptdvkyanneVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNcllsglpdltlsfanpsilhdvrfhpcvrfrpweshqilsfvppdgqfKLMSYRVKklkstpiyvkpqltsdagtcrISVMVGirndpgktiDSIILQfqlppcilsadltsnhgtvnvlsnkictwsigripkdkapslsgtmVLETGLetlrvfptFQVEFRIMGVAlsglqidkldlqnvpnrlYKGFRAvtrageyevrs
midngfplttepnilreMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLkstpiyvkpqltsdagtcrISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKgfravtrageyevrs
MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
*************ILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRA*******
MIDNGFPLTTEPNILREMIAPPNI********************************DVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSG*MVL****E*LRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
**DNGFPLTTEPNILREMIAPPNIVSKMLSV********************PWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
P53678418 AP-3 complex subunit mu-2 yes no 0.996 0.712 0.457 2e-73
Q8R2R9418 AP-3 complex subunit mu-2 yes no 0.996 0.712 0.450 5e-73
P53677418 AP-3 complex subunit mu-2 yes no 0.996 0.712 0.444 1e-72
Q5R478418 AP-3 complex subunit mu-1 no no 0.996 0.712 0.437 5e-72
Q9Y2T2418 AP-3 complex subunit mu-1 no no 0.996 0.712 0.437 5e-72
Q24K11418 AP-3 complex subunit mu-1 no no 0.996 0.712 0.437 1e-71
Q5ZMP7418 AP-3 complex subunit mu-1 no no 0.996 0.712 0.417 1e-71
Q9JKC8418 AP-3 complex subunit mu-1 no no 0.996 0.712 0.434 3e-71
P53676418 AP-3 complex subunit mu-1 no no 0.996 0.712 0.430 3e-71
P47795418 AP-1 complex subunit mu O N/A no 0.996 0.712 0.430 1e-68
>sp|P53678|AP3M2_RAT AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1 Back     alignment and function desciption
 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/304 (45%), Positives = 201/304 (66%), Gaps = 6/304 (1%)

Query: 1   MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKY 60
           M+DNGFPL TE NIL+E+I PP I+  +++ +TG S+NV D LP    S VPWR T VKY
Sbjct: 116 MLDNGFPLATESNILKELIKPPTILRTVVNTITG-STNVGDQLPTGQLSVVPWRRTGVKY 174

Query: 61  ANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFH 120
            NNE Y D+VEE+DAII++ G  V  EI G +     L+G+PDLTLSF NP +L DV FH
Sbjct: 175 TNNEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRLLDDVSFH 234

Query: 121 PCVRFRPWESHQILSFVPPDGQFKLMSYRV--KKLKSTPIYVKPQLT-SDAGTC-RISVM 176
           PCVRF+ WES +ILSF+PPDG F+L+SY V  + L + P+YVK  ++  D+G+  R  + 
Sbjct: 235 PCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHSISFRDSGSLGRFEIT 294

Query: 177 VGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSL 235
           VG +   GKTI+ + +  Q+P  +L+  LT + GT       K+ +W +G+I   K PSL
Sbjct: 295 VGPKQTMGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSL 354

Query: 236 SGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEY 295
            GTM L+ G       PT  ++F+I  +A+SGL++++LD+     + +KG + +T+AG++
Sbjct: 355 KGTMGLQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKF 414

Query: 296 EVRS 299
           +VR+
Sbjct: 415 QVRT 418
Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Ap47 is a subunit of the plasma membrane adaptor.
Rattus norvegicus (taxid: 10116)
>sp|Q8R2R9|AP3M2_MOUSE AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|P53677|AP3M2_HUMAN AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R478|AP3M1_PONAB AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y2T2|AP3M1_HUMAN AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1 Back     alignment and function description
>sp|Q24K11|AP3M1_BOVIN AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMP7|AP3M1_CHICK AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JKC8|AP3M1_MOUSE AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1 Back     alignment and function description
>sp|P53676|AP3M1_RAT AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1 Back     alignment and function description
>sp|P47795|AP1M_DIPOM AP-1 complex subunit mu OS=Diplobatis ommata PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
255542950 415 clathrin coat adaptor ap3 medium chain, 1.0 0.720 0.869 1e-151
224122880 415 predicted protein [Populus trichocarpa] 1.0 0.720 0.846 1e-150
224124446 415 predicted protein [Populus trichocarpa] 1.0 0.720 0.842 1e-149
225450531 415 PREDICTED: AP-3 complex subunit mu-1 [Vi 1.0 0.720 0.842 1e-149
255647624341 unknown [Glycine max] 1.0 0.876 0.842 1e-147
356535002 415 PREDICTED: AP-3 complex subunit mu-1-lik 1.0 0.720 0.836 1e-147
356505759 415 PREDICTED: AP-3 complex subunit mu-1-lik 1.0 0.720 0.842 1e-147
363808242 415 uncharacterized protein LOC100799191 [Gl 1.0 0.720 0.836 1e-146
288551435 415 clathrin-associated adaptor complexes me 1.0 0.720 0.849 1e-145
297853556 415 clathrin adaptor complexes medium subuni 0.996 0.718 0.812 1e-145
>gi|255542950|ref|XP_002512538.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] gi|223548499|gb|EEF49990.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/299 (86%), Positives = 276/299 (92%)

Query: 1   MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKY 60
           MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSD LP AT+SCVPWR TDVKY
Sbjct: 117 MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDTLPNATSSCVPWRTTDVKY 176

Query: 61  ANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFH 120
           ANNEVYVDLVEEMDAIINRDGVL+KCEIYGE+QVN  ++G+PDLTLSF NPSIL DVRFH
Sbjct: 177 ANNEVYVDLVEEMDAIINRDGVLMKCEIYGELQVNSHITGVPDLTLSFTNPSILDDVRFH 236

Query: 121 PCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIR 180
           PCVRFRPWESHQILSFVPPDG FKLMSYRVKKLK+ PIYVKPQLTSDAGTCRI++MVGI+
Sbjct: 237 PCVRFRPWESHQILSFVPPDGLFKLMSYRVKKLKTVPIYVKPQLTSDAGTCRINLMVGIK 296

Query: 181 NDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMV 240
           NDPGK IDSI +QF LPPCILSADLTSNHG VNVLSNK+C WSI RIPKDK PSLSGT+V
Sbjct: 297 NDPGKMIDSINVQFHLPPCILSADLTSNHGVVNVLSNKMCVWSIDRIPKDKTPSLSGTLV 356

Query: 241 LETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 299
           LETGLE L VFP FQ+ FRI GVALSGLQIDKLDL+ VPNRLYKGFRA+TRAG YEVRS
Sbjct: 357 LETGLERLHVFPIFQLSFRIQGVALSGLQIDKLDLKVVPNRLYKGFRALTRAGLYEVRS 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122880|ref|XP_002318939.1| predicted protein [Populus trichocarpa] gi|222857315|gb|EEE94862.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124446|ref|XP_002330025.1| predicted protein [Populus trichocarpa] gi|222871450|gb|EEF08581.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225450531|ref|XP_002281428.1| PREDICTED: AP-3 complex subunit mu-1 [Vitis vinifera] gi|296089804|emb|CBI39623.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255647624|gb|ACU24275.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356535002|ref|XP_003536038.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356505759|ref|XP_003521657.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|363808242|ref|NP_001242747.1| uncharacterized protein LOC100799191 [Glycine max] gi|255641304|gb|ACU20929.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|288551435|gb|ADC53238.1| clathrin-associated adaptor complexes medium subunit [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|297853556|ref|XP_002894659.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297340501|gb|EFH70918.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2027564415 ZIP4 "AT1G56590" [Arabidopsis 0.996 0.718 0.795 3.4e-132
RGD|70969418 Ap3m2 "adaptor-related protein 0.996 0.712 0.457 1.1e-69
MGI|MGI:1929214418 Ap3m2 "adaptor-related protein 0.996 0.712 0.453 3e-69
UNIPROTKB|E1C4U4418 AP3M2 "Uncharacterized protein 0.993 0.710 0.442 3.8e-69
UNIPROTKB|P53677418 AP3M2 "AP-3 complex subunit mu 0.996 0.712 0.447 6.3e-69
UNIPROTKB|E1B763418 AP3M2 "Uncharacterized protein 0.996 0.712 0.447 8e-69
UNIPROTKB|F1SE19418 AP3M2 "Uncharacterized protein 0.996 0.712 0.447 1e-68
UNIPROTKB|F2Z4I2418 AP3M1 "AP-3 complex subunit mu 0.996 0.712 0.437 1.3e-68
UNIPROTKB|Q9Y2T2418 AP3M1 "AP-3 complex subunit mu 0.996 0.712 0.437 1.3e-68
UNIPROTKB|Q5R478418 AP3M1 "AP-3 complex subunit mu 0.996 0.712 0.437 1.3e-68
TAIR|locus:2027564 ZIP4 "AT1G56590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 237/298 (79%), Positives = 271/298 (90%)

Query:     1 MIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKY 60
             MIDNGFPLTTEP+IL+EMIAPPN+VSKMLSVVTGN+SNVSD LP    SCVPWRPTD KY
Sbjct:   117 MIDNGFPLTTEPSILKEMIAPPNLVSKMLSVVTGNASNVSDTLPSGAGSCVPWRPTDPKY 176

Query:    61 ANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFH 120
             ++NEVYVDLVEEMDAI+NRDG LVKCEIYGEVQ+N  L+G PDLTLSFANPSIL D+RFH
Sbjct:   177 SSNEVYVDLVEEMDAIVNRDGELVKCEIYGEVQMNSQLTGFPDLTLSFANPSILEDMRFH 236

Query:   121 PCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIR 180
             PCVR+RPWESHQ+LSFVPPDG+FKLMSYRVKKLK+TP+YVKPQ+TSD+GTCRISV+VGIR
Sbjct:   237 PCVRYRPWESHQVLSFVPPDGEFKLMSYRVKKLKNTPVYVKPQITSDSGTCRISVLVGIR 296

Query:   181 NDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMV 240
             +DPGKTI+SI L FQLP C+ SADL+SNHGTV +LSNK CTW+IGRIPKDK P LSGT+ 
Sbjct:   297 SDPGKTIESITLSFQLPHCVSSADLSSNHGTVTILSNKTCTWTIGRIPKDKTPCLSGTLA 356

Query:   241 LETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 298
             LE GLE L VFPTF++ F+IMG+ALSGL+I+KLDLQ +P RLYKGFRA TRAGE++VR
Sbjct:   357 LEPGLERLHVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRAQTRAGEFDVR 414
GO:0005622 "intracellular" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=IGI
GO:0009630 "gravitropism" evidence=IMP
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
RGD|70969 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1929214 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4U4 AP3M2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P53677 AP3M2 "AP-3 complex subunit mu-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B763 AP3M2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SE19 AP3M2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4I2 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2T2 AP3M1 "AP-3 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R478 AP3M1 "AP-3 complex subunit mu-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XIII000028
hypothetical protein (415 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-111
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 1e-73
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 4e-69
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 4e-64
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 6e-46
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 2e-36
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 6e-31
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 3e-30
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 1e-29
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-25
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 7e-17
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 6e-12
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 2e-05
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 9e-04
cd09257246 cd09257, AP_muniscins_like_MHD, Mu-homology domain 0.001
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information 
 Score =  322 bits (829), Expect = e-111
 Identities = 116/248 (46%), Positives = 162/248 (65%), Gaps = 3/248 (1%)

Query: 51  VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 110
           VPWR   VKY NNE+YVD+VEE+DAI+++ G  V  E+ G +  N  LSG+PDLTLS  N
Sbjct: 1   VPWRRAGVKYTNNEIYVDVVEEIDAIVDKSGKPVSGEVSGSIDCNSRLSGMPDLTLSLNN 60

Query: 111 PSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVK--KLKSTPIYVKPQLTSDA 168
           P +L D  FHPCVR   WES ++LSF+PPDG+F LMSYRV    L   P+YVKPQ++   
Sbjct: 61  PGLLDDPSFHPCVRLSRWESDRVLSFIPPDGKFTLMSYRVDLNSLVQLPVYVKPQISLGK 120

Query: 169 GTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVL-SNKICTWSIGRI 227
           G  R  + VG R + GKTI++++++  LP  + S  LT++HGT +   S K   WSIG++
Sbjct: 121 GGGRFEISVGPRGNLGKTIENVVVEIPLPKGVKSLRLTASHGTFSFDSSTKTLVWSIGKL 180

Query: 228 PKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFR 287
              K P+L G++ LE+G E     P+  V F+I G   SGL++D LD+ N   + +KG +
Sbjct: 181 TPGKTPTLRGSISLESGEEAPSEPPSISVSFKIPGYLPSGLKVDSLDIYNEKYKPFKGVK 240

Query: 288 AVTRAGEY 295
            +T+AG+Y
Sbjct: 241 YITKAGKY 248

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric adaptor protein complex 3 (AP-3) medium mu3 subunit, which includes two closely related homologs, mu3A (P47A, encoded by ap3m1) and mu1B (P47B, encoded by ap3m2). Mu3A is ubiquitously expressed, but mu3B is specifically expressed in neurons and neuroendocrine cells. AP-3 is particularly important for targeting integral membrane proteins to lysosomes and lysome-related organelles at trans-Golgi network (TGN) and/or endosomes, such as the yeast vacuole, fly pigment granules and mammalian melanosomes, platelet dense bodies and the secretory lysosomes of cytotoxic T lymphocytes. Unlike AP-1 and AP-2, which function in conjunction with clathrin which is a scaffolding protein participating in the formation of coated vesicles, the nature of the outer shell of AP-3 containing coats remains to be elucidated. Membrane-anchored cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-3 mu3 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 248
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211368 cd09257, AP_muniscins_like_MHD, Mu-homology domain (MHD) of muniscins adaptor proteins (AP) and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 99.97
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.24
PF0350495 Chlam_OMP6: Chlamydia cysteine-rich outer membrane 81.25
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-79  Score=544.68  Aligned_cols=296  Identities=29%  Similarity=0.544  Sum_probs=264.7

Q ss_pred             CcccccccccChhhHccccCCCcccccc--eeeccCCCCcccccCCCCCcccCcccCCCCCcccceEEEEEEEeEEEEEc
Q 022308            1 MIDNGFPLTTEPNILREMIAPPNIVSKM--LSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIIN   78 (299)
Q Consensus         1 ~~D~G~p~~t~~~~Lk~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~neI~vdV~E~i~~~~~   78 (299)
                      ||||||||+|||++|+.+|..+++-++-  ++......++......+..++.++||+.|++|++||+|+||.|++|.+++
T Consensus       114 mld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS  193 (446)
T KOG0938|consen  114 MLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMS  193 (446)
T ss_pred             HHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccceeEeEehheeeeEEc
Confidence            7899999999999999999998875441  11111111222222224667889999999999999999999999999999


Q ss_pred             cCCcEEEEEEEEEEEEEEEeCCCCeEEEEecCCc---------------------------ccccceecceeecCCCCCC
Q 022308           79 RDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS---------------------------ILHDVRFHPCVRFRPWESH  131 (299)
Q Consensus        79 ~~G~v~~~~i~G~i~~~~~LsG~P~~~l~ln~~~---------------------------~l~d~~fH~cV~~~~f~~~  131 (299)
                      ++|++++++|.|.|.|+++|||||+|+++|||+.                           .|+||+||+||++++|+++
T Consensus       194 ~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~e  273 (446)
T KOG0938|consen  194 SDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSE  273 (446)
T ss_pred             CCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeecccccccc
Confidence            9999999999999999999999999999999864                           3999999999999999999


Q ss_pred             ceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCeeEEEEEEEeecCCC--CceeeEEEEEECCCCceeeEEEecc
Q 022308          132 QILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTIDSIILQFQLPPCILSADLTSNH  209 (299)
Q Consensus       132 ~~l~f~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~~~ei~l~~~~~~~--~~~~~v~I~iPlP~~~~~~~~~~~~  209 (299)
                      +.|+|+||||+|+||+||+..+.++||+|.|.++.. +..++||++.+++.++  ..+.+|.++||+|+++..++++++.
T Consensus       274 h~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el-~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~  352 (446)
T KOG0938|consen  274 HIISFVPPDGEFELMKYRVTENINLPFRVTPIVTEL-GRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSN  352 (446)
T ss_pred             ceEEEeCCCCceEeEeeeeccCcccceEeeeheecc-cceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEec
Confidence            999999999999999999999999999999999964 4799999999999985  3899999999999999999999999


Q ss_pred             eeceeEeC--cEEEEEeCCcCCCCceEEEEEEEeecCC--ccCCCCccEEEEEEECceeccccEEeEEEee--cCCCccc
Q 022308          210 GTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGL--ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQ--NVPNRLY  283 (299)
Q Consensus       210 G~~~~~~~--~~l~W~i~~~~~~~~~~l~g~~~~~~~~--~~~~~~~pi~v~F~i~~~~~Sgl~V~~l~v~--~~~~~~~  283 (299)
                      |++ +|.+  ++++|+|+++.|.+|.++++++++....  ...|..+||+|+|++||++.|||.|++++|.  +++|+..
T Consensus       353 Gka-ky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~v  431 (446)
T KOG0938|consen  353 GKA-KYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAV  431 (446)
T ss_pred             Ccc-ccCcccceEEEEecccCCcccceeEEEEEeccCccccccccCCCceeEEeeeeecCCceEEEEEEEecccCCCceE
Confidence            999 9999  9999999999999999999999996544  3458899999999999999999999999993  4789999


Q ss_pred             ccEEEEEecccEEEc
Q 022308          284 KGFRAVTRAGEYEVR  298 (299)
Q Consensus       284 k~vry~t~sg~Y~~R  298 (299)
                      |||||+|+||+||+|
T Consensus       432 kWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  432 KWVRYITKAGSYEIR  446 (446)
T ss_pred             EEEEEecccceeeeC
Confidence            999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 3e-57
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 8e-28
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 3e-24
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-21
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-20
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 7e-19
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-18
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 4e-18
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 5e-18
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 5e-18
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-16
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 8e-15
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 5e-12
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/254 (40%), Positives = 163/254 (64%), Gaps = 5/254 (1%)
Query: 51  VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 110
           +PWR   VKY NNE Y D+VEE+DAII++ G  V  EI G +     LSG+PDL+LSF N
Sbjct: 8   IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 111 PSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRV--KKLKSTPIYVKPQLT-SD 167
           P +L DV FHPC+RF+ WES ++LSF+PPDG F+L+SYRV  + L + P+YVK  ++  +
Sbjct: 68  PRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHNISFKE 127
Query: 168 AGTC-RISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIG 225
             +C R  + +G + + GKTI+ I +   +P  +L+ +LT   G+       K+  W +G
Sbjct: 128 NSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLAWDVG 187
Query: 226 RIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKG 285
           +I   K PSL G + L++G       P   ++F+I  +A+SGL++++LD+     + +KG
Sbjct: 188 KITPQKLPSLKGLVNLQSGAPKPEENPNLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKG 247
Query: 286 FRAVTRAGEYEVRS 299
            + +T+AG+++VR+
Sbjct: 248 VKYITKAGKFQVRT 261
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 4e-68
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 1e-63
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 8e-62
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 5e-60
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 2e-58
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 5e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
 Score =  213 bits (543), Expect = 4e-68
 Identities = 68/318 (21%), Positives = 124/318 (38%), Gaps = 34/318 (10%)

Query: 9   TTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVD 68
            +E   L+  I    I S+  +    +       +       + WR   +KY  NE+++D
Sbjct: 2   NSETGALKTFITQQGIKSQHQTKEEQSQ------ITSQVTGQIGWRREGIKYRRNELFLD 55

Query: 69  LVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSI--------------- 113
           ++E ++ +++  G ++   + G V +   LSG+P+      +  +               
Sbjct: 56  VLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKS 115

Query: 114 ------LHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSD 167
                 + D  FH CVR   ++S + +SF+PPDG+F+LM YR  K    P  V P +   
Sbjct: 116 GKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREV 175

Query: 168 AGT-CRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVN-VLSNKICTWSIG 225
             T   + V++     P      I ++   P       +    G      S     W I 
Sbjct: 176 GRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIK 235

Query: 226 RIPKDKAPSLSGTMVLE-TGLETLRVFPTFQVEFRIM----GVALSGLQIDKLDLQNVPN 280
           R+   K   +S  + L  T  +     P   + F +     G+ +  L++ +  L    +
Sbjct: 236 RMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDH 295

Query: 281 RLYKGFRAVTRAGEYEVR 298
            + K  R + R+G YE R
Sbjct: 296 DVIKWVRYIGRSGIYETR 313
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.12
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
Probab=100.00  E-value=7.4e-77  Score=548.20  Aligned_cols=283  Identities=24%  Similarity=0.450  Sum_probs=226.0

Q ss_pred             cccChhhHccccCCCcccccceeeccCCCCcccccCCCCCcccCcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEE
Q 022308            8 LTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCE   87 (299)
Q Consensus         8 ~~t~~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~neI~vdV~E~i~~~~~~~G~v~~~~   87 (299)
                      |+||+++||+||.++++..+...      ...+..+|++.+++++||+.|++|++|||||||+|+|+++++++|.+++++
T Consensus         1 q~te~~~Lk~~i~~~~~~~~~~~------~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~e   74 (314)
T 1i31_A            1 QNSETGALKTFITQQGIKSQHQT------KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAH   74 (314)
T ss_dssp             -------------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEE
T ss_pred             CcCChHHHHHhhcCCCeeccccc------cccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEE
Confidence            79999999999999998654321      012335567888999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEEEeCCCCeEEEEecCC---------------------cccccceecceeecCCCCCCceEEEeCCCCcEEEE
Q 022308           88 IYGEVQVNCLLSGLPDLTLSFANP---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLM  146 (299)
Q Consensus        88 i~G~i~~~~~LsG~P~~~l~ln~~---------------------~~l~d~~fH~cV~~~~f~~~~~l~f~PPdG~F~Lm  146 (299)
                      |.|.|.|+|+|+|||+|+|+||++                     ..++||+|||||++++|+++|+|+|+||||+|+||
T Consensus        75 V~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm  154 (314)
T 1i31_A           75 VSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELM  154 (314)
T ss_dssp             EEEEEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEE
T ss_pred             EEEEEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEE
Confidence            999999999999999999999885                     24789999999999999999999999999999999


Q ss_pred             EEEecCCCCCCEEEEEEEEEcCCeeEEEEEEEeecCCCC--ceeeEEEEEECCCCceeeEEEecceeceeEeC--cEEEE
Q 022308          147 SYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTW  222 (299)
Q Consensus       147 ~Yr~~~~~~~P~~i~~~~~~~~~~~~~ei~l~~~~~~~~--~~~~v~I~iPlP~~~~~~~~~~~~G~~~~~~~--~~l~W  222 (299)
                      +||++.+..+||.|+||++..+ ++++||+++++++++.  .++||.|+||+|+++..++++++.|++ +|++  ++|+|
T Consensus       155 ~Yr~~~~~~lP~~v~~~~~~~g-~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W  232 (314)
T 1i31_A          155 RYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVW  232 (314)
T ss_dssp             EEEECSSCCCCEEEEEEEEEET-TTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEE-EEEGGGTEEEE
T ss_pred             EEEecCCcCCCEEEEEEEEecC-CcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceE-EEecCCCEEEE
Confidence            9999988889999999999653 4799999999988754  699999999999999999999999999 9999  99999


Q ss_pred             EeCCcCCCCceEEEEEEEeecCC-ccCCCCccEEEEEEECceeccccEEeEEEeec-----CCCcccccEEEEEecccEE
Q 022308          223 SIGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYE  296 (299)
Q Consensus       223 ~i~~~~~~~~~~l~g~~~~~~~~-~~~~~~~pi~v~F~i~~~~~Sgl~V~~l~v~~-----~~~~~~k~vry~t~sg~Y~  296 (299)
                      +|++++++.+++++|+++|.+.. ...+.++||+|+|++| +++|||+|++|+|.+     ++|+|+|||||+|+||+|+
T Consensus       233 ~I~~i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~  311 (314)
T 1i31_A          233 KIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE  311 (314)
T ss_dssp             EEEEEESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEE
T ss_pred             EeCcCCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEE
Confidence            99999999999999999997643 3446699999999999 999999999999954     4799999999999999999


Q ss_pred             EcC
Q 022308          297 VRS  299 (299)
Q Consensus       297 ~R~  299 (299)
                      +|+
T Consensus       312 ~R~  314 (314)
T 1i31_A          312 TRC  314 (314)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            996
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 8e-69
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 1e-04
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  213 bits (543), Expect = 8e-69
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 28/276 (10%)

Query: 51  VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 110
           + WR   +KY  NE+++D++E ++ +++  G ++   + G V +   LSG+P+      +
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 111 P---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYR 149
                                   + D  FH CVR   ++S + +SF+PPDG+F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 150 VKKLKSTPIYVKPQLTSDAGT-CRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSN 208
             K    P  V P +     T   + V++     P      I ++   P       +   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 209 HGTVN-VLSNKICTWSIGRIPKDKAPSLSGTMVL-ETGLETLRVFPTFQVEFRIM----G 262
            G      S     W I R+   K   +S  + L  T  +     P   + F +     G
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSG 240

Query: 263 VALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 298
           + +  L++ +  L    + + K  R + R+G YE R
Sbjct: 241 LKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-67  Score=476.86  Aligned_cols=246  Identities=26%  Similarity=0.490  Sum_probs=221.4

Q ss_pred             CcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEEecCCc------------------
Q 022308           51 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS------------------  112 (299)
Q Consensus        51 ~~WR~~~~~~~~neI~vdV~E~i~~~~~~~G~v~~~~i~G~i~~~~~LsG~P~~~l~ln~~~------------------  112 (299)
                      +|||+.|++|++|||||||+|+|+++++++|.+++++|+|+|.|+|+|+|+|+|+|+||++.                  
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            69999999999999999999999999999999999999999999999999999999998753                  


Q ss_pred             ---ccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCeeEEEEEEEeecCCC--Cce
Q 022308          113 ---ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTI  187 (299)
Q Consensus       113 ---~l~d~~fH~cV~~~~f~~~~~l~f~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~~~ei~l~~~~~~~--~~~  187 (299)
                         .|+||+||+|||++.|+++++|+|+||||+|+||+||++.+..+||.+.+++.... +.+++++++++++.+  ..+
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~-~~~~~~~i~l~~~~~~~~~~  159 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKSNFKPSLLA  159 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEET-TTEEEEEEEEEECSCTTCEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEecc-CcEEEEEEEEEeccCCCeee
Confidence               48999999999999999999999999999999999999988999999999998654 567888888888754  389


Q ss_pred             eeEEEEEECCCCceeeEEEecceeceeEeC--cEEEEEeCCcCCCCceEEEEEEEeecCCcc-CCCCccEEEEEEECcee
Q 022308          188 DSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGLET-LRVFPTFQVEFRIMGVA  264 (299)
Q Consensus       188 ~~v~I~iPlP~~~~~~~~~~~~G~~~~~~~--~~l~W~i~~~~~~~~~~l~g~~~~~~~~~~-~~~~~pi~v~F~i~~~~  264 (299)
                      +||.|+||+|.++..++++++.|++ +|+.  ++++|+|++++++.+++++|++++...... ...++||+|+|++| ++
T Consensus       160 ~~v~I~iP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         160 QKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEEECCTTEEEEEEEESSSEE-EEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SC
T ss_pred             eEEEEEeeCCCcccCceEEecCceE-EEeccCCEEEEecccccCCccceEEEEEEeccCCCCccccCCcEEEEEEec-cc
Confidence            9999999999999999999999999 9998  999999999999999999999999754433 35588999999999 79


Q ss_pred             ccccEEeEEEeec-----CCCcccccEEEEEecccEEEcC
Q 022308          265 LSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYEVRS  299 (299)
Q Consensus       265 ~Sgl~V~~l~v~~-----~~~~~~k~vry~t~sg~Y~~R~  299 (299)
                      +||++|++|+|.+     .+|+++|||||+|+||+|++|.
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            9999999999943     3589999999999999999995