Citrus Sinensis ID: 022365

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MMSKHPAASVSRSNNSTGFFSKIKNSTCFSSSSSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFGQ
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccEEEEEEcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccEEEEEcccEEEEccccccccHHHHHHHHcccEEEEccccccccccHHHHHHHcccccccccccccccEEEEEccccccEEEEEccccccccccHHHHHHccccccHHHHHHHHHHHHHHcccccccEEEEEEEcc
ccccccccccccccccHHHHcHHHHHcccccccccccccccccccccEEEEEEccccccccccccEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccEEEEEEcccccEEEEcccEEEEccccccccHHHHHHHHcccEEEEccccccccccEHHHHHHHccHHHHHHccccccEEEEEEccccEEEEEEcccHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHccccccEEEEEEEEcc
mmskhpaasvsrsnnstgffskiknstcfsssssdtgkgrsksssnkvshgyhlvegqsghdmEDYLVAEYRKKKNHVLGLFAIfdghlgdrvptylkdnlfnnileesnfwkdpkAAITNAYRSTDQFILensmqlgpggstAVTAIVIDgkdlwvanvgdSRAVVCergsanqitvdhephaeRRRIEKqggfvtslpgdvprvngQLAVARAFGDQSLkahlssepdvrhvpidpsiEFLILASDGLWKVMKNQeavdlvkpikdpqAAAKRLTTEALARKSKDDISCIVIRFGQ
mmskhpaasvsrsnnstGFFSkiknstcfsssssdtgkgrsksssnkvshgyhlvegqsghDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCErgsanqitvdhephaerrRIEKQggfvtslpgdvPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVdlvkpikdpqaAAKRLTTealarkskddisCIVIRFGQ
MMSKHPAASVSRSNNSTGFFskiknstcfsssssdtgkgrsksssNKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFGQ
*************************************************************DMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQI******************FVTSLPGDVPRVNGQLAVARAFG*************VRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPI*********************DISCIVIRF**
************************************************SHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFGQ
**************NSTGFFSKIKNS***********************HGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFGQ
*********************************************NKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFGQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMSKHPAASVSRSNNSTGFFSKIKNSTCFSSSSSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query298 2.2.26 [Sep-21-2011]
Q0JAA0321 Probable protein phosphat yes no 0.932 0.866 0.817 1e-136
Q0D673290 Probable protein phosphat no no 0.932 0.958 0.639 1e-100
Q93YW5283 Probable protein phosphat yes no 0.936 0.985 0.617 1e-100
Q9SIU8290 Probable protein phosphat no no 0.916 0.941 0.615 5e-96
Q9S9Z7282 Probable protein phosphat no no 0.902 0.953 0.601 3e-92
Q9LDA7289 Probable protein phosphat no no 0.892 0.920 0.610 3e-91
Q9LME4281 Probable protein phosphat no no 0.902 0.957 0.570 7e-91
Q7XQU7284 Probable protein phosphat no no 0.889 0.933 0.603 5e-90
Q8L7I4283 Probable protein phosphat no no 0.875 0.922 0.578 3e-84
O64583339 Probable protein phosphat no no 0.828 0.728 0.581 1e-77
>sp|Q0JAA0|P2C44_ORYSJ Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1 Back     alignment and function desciption
 Score =  483 bits (1242), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/280 (81%), Positives = 256/280 (91%), Gaps = 2/280 (0%)

Query: 19  FFSKIKNSTCFSSSSSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHV 78
             + I+++TC +SSS+DTGKGRSK SSNKV+HG+HLVEG+SGHDMEDY VAEY+  K+H 
Sbjct: 40  ILNMIRSATCLNSSSTDTGKGRSKQSSNKVTHGFHLVEGKSGHDMEDYHVAEYKYDKSHE 99

Query: 79  LGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLG 138
           LGLFAIFDGHLGD VP+YLK NLF NIL+E  FW +P+ AI NAYRST+++ILEN+ QLG
Sbjct: 100 LGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAYRSTNKYILENAKQLG 159

Query: 139 PGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFV 196
           PGGSTAVTAIV+DGKD+WVANVGDSRAVVCERG+ANQ+TVDHEPH   ER+RIEKQGGFV
Sbjct: 160 PGGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFV 219

Query: 197 TSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKN 256
           T+ PGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPI+ SIEF+ILASDGLWKVMKN
Sbjct: 220 TTFPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKN 279

Query: 257 QEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRF 296
           QEAVDLVK IKDPQAAAKRLTTEALARKSKDDISCIVIRF
Sbjct: 280 QEAVDLVKSIKDPQAAAKRLTTEALARKSKDDISCIVIRF 319

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q0D673|P2C62_ORYSJ Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1 Back     alignment and function description
>sp|Q93YW5|P2C58_ARATH Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1 Back     alignment and function description
>sp|Q9SIU8|P2C20_ARATH Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3 Back     alignment and function description
>sp|Q9S9Z7|P2C10_ARATH Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1 Back     alignment and function description
>sp|Q9LDA7|P2C39_ARATH Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1 Back     alignment and function description
>sp|Q9LME4|P2C09_ARATH Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1 Back     alignment and function description
>sp|Q7XQU7|P2C41_ORYSJ Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0452000 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7I4|P2C17_ARATH Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1 Back     alignment and function description
>sp|O64583|P2C28_ARATH Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
255546870295 protein phosphatase 2c, putative [Ricinu 0.989 1.0 0.847 1e-142
225465553285 PREDICTED: probable protein phosphatase 0.942 0.985 0.839 1e-140
115460446321 Os04g0609600 [Oryza sativa Japonica Grou 0.932 0.866 0.817 1e-134
32488822317 OSJNBa0085I10.2 [Oryza sativa Japonica G 0.932 0.876 0.817 1e-134
242077128321 hypothetical protein SORBIDRAFT_06g02803 0.932 0.866 0.796 1e-131
226500024318 protein phosphatase 2C [Zea mays] gi|195 0.932 0.874 0.796 1e-131
357165843316 PREDICTED: probable protein phosphatase 0.932 0.879 0.789 1e-130
414585528315 TPA: putative protein phosphatase 2C fam 0.932 0.882 0.785 1e-127
357139951318 PREDICTED: probable protein phosphatase 0.932 0.874 0.75 1e-123
224090621235 predicted protein [Populus trichocarpa] 0.788 1.0 0.876 1e-121
>gi|255546870|ref|XP_002514493.1| protein phosphatase 2c, putative [Ricinus communis] gi|223546392|gb|EEF47893.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/296 (84%), Positives = 271/296 (91%), Gaps = 1/296 (0%)

Query: 2   MSKHPAASVSRSNNSTGFFSKIKNSTCFSSSSSDTGKGRSKSSSNKVSHGYHLVEGQSGH 61
           MSKH  A  SR++    FF KIK S+C +SSS DTGKGRSKSSS K+SHG+ LVEG+SGH
Sbjct: 1   MSKHSVAGASRTSKPPTFFQKIK-SSCLNSSSPDTGKGRSKSSSKKMSHGFQLVEGKSGH 59

Query: 62  DMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITN 121
           DMEDY VAEYRK KNH LGLFAIFDGHLGDRVP+YLKDNLF NIL+E  FW DPK AI N
Sbjct: 60  DMEDYHVAEYRKIKNHELGLFAIFDGHLGDRVPSYLKDNLFLNILQEPQFWDDPKTAIKN 119

Query: 122 AYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHE 181
           AY++TD+FILENSMQLGPGGSTAVTAIVIDGKDLWVAN+GDSRAVVCERGSANQ+TVDHE
Sbjct: 120 AYKNTDKFILENSMQLGPGGSTAVTAIVIDGKDLWVANIGDSRAVVCERGSANQLTVDHE 179

Query: 182 PHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIE 241
           PH ER+RIEKQGGFVT+LPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPID ++E
Sbjct: 180 PHTERKRIEKQGGFVTTLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDSTME 239

Query: 242 FLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 297
           F+ILASDGLWKVM+NQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG
Sbjct: 240 FVILASDGLWKVMQNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465553|ref|XP_002274944.1| PREDICTED: probable protein phosphatase 2C 44 isoform 1 [Vitis vinifera] gi|297745124|emb|CBI38963.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115460446|ref|NP_001053823.1| Os04g0609600 [Oryza sativa Japonica Group] gi|122240832|sp|Q0JAA0.1|P2C44_ORYSJ RecName: Full=Probable protein phosphatase 2C 44; Short=OsPP2C44 gi|113565394|dbj|BAF15737.1| Os04g0609600 [Oryza sativa Japonica Group] gi|218195541|gb|EEC77968.1| hypothetical protein OsI_17335 [Oryza sativa Indica Group] gi|222629521|gb|EEE61653.1| hypothetical protein OsJ_16105 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|32488822|emb|CAE03557.1| OSJNBa0085I10.2 [Oryza sativa Japonica Group] gi|90265077|emb|CAH67750.1| H0702G05.9 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|242077128|ref|XP_002448500.1| hypothetical protein SORBIDRAFT_06g028030 [Sorghum bicolor] gi|241939683|gb|EES12828.1| hypothetical protein SORBIDRAFT_06g028030 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|226500024|ref|NP_001148728.1| protein phosphatase 2C [Zea mays] gi|195621678|gb|ACG32669.1| protein phosphatase 2C [Zea mays] gi|238007398|gb|ACR34734.1| unknown [Zea mays] gi|413919469|gb|AFW59401.1| putative protein phosphatase 2C family protein [Zea mays] Back     alignment and taxonomy information
>gi|357165843|ref|XP_003580512.1| PREDICTED: probable protein phosphatase 2C 44-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|414585528|tpg|DAA36099.1| TPA: putative protein phosphatase 2C family protein isoform 1 [Zea mays] gi|414585529|tpg|DAA36100.1| TPA: putative protein phosphatase 2C family protein isoform 2 [Zea mays] Back     alignment and taxonomy information
>gi|357139951|ref|XP_003571538.1| PREDICTED: probable protein phosphatase 2C 44-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|224090621|ref|XP_002309037.1| predicted protein [Populus trichocarpa] gi|222855013|gb|EEE92560.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
TAIR|locus:2121373283 AT4G28400 [Arabidopsis thalian 0.835 0.879 0.650 2.9e-87
TAIR|locus:2046046290 PIA1 "PP2C induced by AVRRPM1" 0.825 0.848 0.650 2.1e-84
TAIR|locus:2008341282 AT1G34750 [Arabidopsis thalian 0.835 0.882 0.626 5.2e-81
TAIR|locus:2087095289 AT3G15260 [Arabidopsis thalian 0.838 0.865 0.616 2.6e-79
TAIR|locus:2194734283 AT1G78200 [Arabidopsis thalian 0.835 0.879 0.591 5e-76
TAIR|locus:2061579339 AT2G34740 [Arabidopsis thalian 0.828 0.728 0.581 2.5e-72
TAIR|locus:2124784311 WIN2 "HOPW1-1-interacting 2" [ 0.825 0.790 0.466 1.5e-53
TAIR|locus:2149363 447 AT5G24940 [Arabidopsis thalian 0.822 0.548 0.464 7.2e-52
TAIR|locus:2183695354 AT5G10740 [Arabidopsis thalian 0.822 0.692 0.460 1.7e-50
TAIR|locus:2029172371 AT1G43900 [Arabidopsis thalian 0.822 0.660 0.430 1.4e-48
TAIR|locus:2121373 AT4G28400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 162/249 (65%), Positives = 204/249 (81%)

Query:    48 VSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILE 107
             ++HG+H V+G+S H MEDY+V+E++K + H LGLFAIFDGHLG  V  YL+ NLF+NIL+
Sbjct:    34 ITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLFDNILK 93

Query:   108 ESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVV 167
             E +FW D + AI NAYRSTD  IL+ S++LG GGSTAVT I+IDGK L VANVGDSRAV+
Sbjct:    94 EKDFWTDTENAIRNAYRSTDAVILQQSLKLGKGGSTAVTGILIDGKKLVVANVGDSRAVM 153

Query:   168 CERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSS 227
              + G A+Q++VDHEP  E++ IE +GGFV+++PGDVPRV+GQLAVARAFGD+SLK HLSS
Sbjct:   154 SKNGVAHQLSVDHEPSKEKKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKLHLSS 213

Query:   228 EPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKD 287
             EPD+ H  ID   EF++ ASDG+WKV+ NQEAVD +K IKDP AAAK L  EA++RKSKD
Sbjct:   214 EPDITHQTIDDHTEFILFASDGIWKVLSNQEAVDAIKSIKDPHAAAKHLIEEAISRKSKD 273

Query:   288 DISCIVIRF 296
             DISCIV++F
Sbjct:   274 DISCIVVKF 282
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0005575 "cellular_component" evidence=ND
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
TAIR|locus:2046046 PIA1 "PP2C induced by AVRRPM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008341 AT1G34750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087095 AT3G15260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194734 AT1G78200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061579 AT2G34740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124784 WIN2 "HOPW1-1-interacting 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149363 AT5G24940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183695 AT5G10740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029172 AT1G43900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93YW5P2C58_ARATH3, ., 1, ., 3, ., 1, 60.61780.93620.9858yesno
Q0JAA0P2C44_ORYSJ3, ., 1, ., 3, ., 1, 60.81780.93280.8660yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033792001
SubName- Full=Chromosome undetermined scaffold_69, whole genome shotgun sequence; (293 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 8e-80
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 4e-76
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 2e-58
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 2e-42
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 6e-38
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 2e-33
PRK14559645 PRK14559, PRK14559, putative protein serine/threon 1e-05
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  241 bits (618), Expect = 8e-80
 Identities = 108/262 (41%), Positives = 139/262 (53%), Gaps = 21/262 (8%)

Query: 48  VSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILE 107
            S G     G      ED +V +         GLF +FDGH G     +    L   +LE
Sbjct: 1   FSAGVSDKGGDRKT-NEDAVVIKPNLNNEDG-GLFGVFDGHGGHAAGEFASKLLVEELLE 58

Query: 108 ESNFW-----KDPKAAITNAYRSTDQFILENS---MQLGPGGSTAVTAIVIDGKDLWVAN 159
           E         +D + A+  A+   D+ ILE +         G+TAV A++   K L+VAN
Sbjct: 59  ELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNK-LYVAN 117

Query: 160 VGDSRAVVCERGSANQITVDHEPH--AERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFG 217
           VGDSRAV+C  G A Q+T DH+P    ER RIEK GG V        RV G LAV RA G
Sbjct: 118 VGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRV-----SNGRVPGVLAVTRALG 172

Query: 218 DQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVK---PIKDPQAAAK 274
           D  LK  +S+EPDV  V +    +FLILASDGLW V+ NQEAVD+V+     +D Q AA+
Sbjct: 173 DFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQ 232

Query: 275 RLTTEALARKSKDDISCIVIRF 296
            L   AL R S D+I+ +V+R 
Sbjct: 233 ELVDLALRRGSHDNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 298
PLN03145365 Protein phosphatase 2c; Provisional 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
PRK14559645 putative protein serine/threonine phosphatase; Pro 100.0
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
KOG0699542 consensus Serine/threonine protein phosphatase [Si 100.0
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.97
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.95
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.94
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.89
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.86
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.82
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.73
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.66
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 98.85
PRK10693303 response regulator of RpoS; Provisional 87.57
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-47  Score=345.08  Aligned_cols=246  Identities=35%  Similarity=0.566  Sum_probs=207.8

Q ss_pred             CceeEEEEeeecCCCCCCCceEEEEeecc--------CCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCcCHHH
Q 022365           46 NKVSHGYHLVEGQSGHDMEDYLVAEYRKK--------KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKA  117 (298)
Q Consensus        46 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~  117 (298)
                      +-+.++.+|++|.|+ .|||++++.....        ......||+|||||||+.++.++++.+.+.+.+...+...+..
T Consensus        63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~  141 (365)
T PLN03145         63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK  141 (365)
T ss_pred             CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence            457899999999866 9999987532110        1233579999999999999999999999998876655556788


Q ss_pred             HHHHHHHHHHHHHHHhccc-CCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChh--HHHHHHHcCC
Q 022365          118 AITNAYRSTDQFILENSMQ-LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGG  194 (298)
Q Consensus       118 ~l~~a~~~~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~ri~~~gg  194 (298)
                      .|.++|.++++.+.+.... ....+|||++++++.++.+|++||||||+|++|++++.+||.||++.+  |+.||.+.||
T Consensus       142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg  221 (365)
T PLN03145        142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG  221 (365)
T ss_pred             HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence            8999999999998765432 234589999999999999999999999999999999999999999986  8899999999


Q ss_pred             eeecCCCCcCccCCceeeecccCCccccC-------cccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhH----
Q 022365          195 FVTSLPGDVPRVNGQLAVARAFGDQSLKA-------HLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLV----  263 (298)
Q Consensus       195 ~~~~~~~~~~~~~~~~~ltr~lG~~~~~~-------~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~----  263 (298)
                      .+..     .+.++.+.+||+||+..+|.       .+.++|++..+++.++|++||||||||||+|+++++.+++    
T Consensus       222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l  296 (365)
T PLN03145        222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRL  296 (365)
T ss_pred             ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHH
Confidence            8863     35667778999999976642       2578999999999998788899999999999999975554    


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022365          264 KPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG  297 (298)
Q Consensus       264 ~~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~  297 (298)
                      ....+++++|+.|++.|+.+++.||+|+|||+|+
T Consensus       297 ~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~  330 (365)
T PLN03145        297 QEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ  330 (365)
T ss_pred             hcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence            4456899999999999999999999999999986

>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 1e-28
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 2e-28
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 2e-26
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 2e-25
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 7e-25
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 7e-25
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 8e-25
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 8e-25
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 8e-25
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 1e-24
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 2e-24
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 2e-24
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 2e-24
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 2e-24
3fxj_A390 Crystal Structure Of Human Protein Phosphatase 1a ( 6e-23
1a6q_A382 Crystal Structure Of The Protein SerineTHREONINE PH 6e-23
2i44_A324 Crystal Structure Of Serine-Threonine Phosphatase 2 6e-14
2isn_A364 Crystal Structure Of A Phosphatase From A Pathogeni 3e-11
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 2e-10
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 4e-10
2pop_A353 The Crystal Structure Of Tab1 And Bir1 Complex Leng 6e-09
2pom_A372 Tab1 With Manganese Ion Length = 372 1e-06
2j4o_A401 Structure Of Tab1 Length = 401 2e-06
2irm_A358 Crystal Structure Of Mitogen-Activated Protein Kina 1e-04
2j82_A240 Structural Analysis Of The Pp2c Family Phosphatase 2e-04
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 82  FAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFI-----LENSMQ 136
           FA++DGH G     +   ++   I++     K+ +  +T A+   D+       L     
Sbjct: 38  FAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADAT 97
Query: 137 LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGG 194
           L   G+TA  A++ DG +L VA+VGDSRA++C +G   ++T+DH P    E+ RI+K GG
Sbjct: 98  LLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGG 157
Query: 195 FVTSLPGDVPRVNGQLAVARAFGDQSLKAH-LSSEPDVRHVPIDPSIE-FLILASDGLWK 252
           FV       P VNG+LA+ R+ GD  LK   + +EP+ + + +  + + FL+L +DG+  
Sbjct: 158 FVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINF 217
Query: 253 VMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 297
           ++ +QE  D V    DP  AA  +T +A+   ++D+ + +V+ FG
Sbjct: 218 MVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFG 262
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From Toxoplasma Gondii Length = 324 Back     alignment and structure
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii Length = 364 Back     alignment and structure
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex Length = 353 Back     alignment and structure
>pdb|2POM|A Chain A, Tab1 With Manganese Ion Length = 372 Back     alignment and structure
>pdb|2J4O|A Chain A, Structure Of Tab1 Length = 401 Back     alignment and structure
>pdb|2IRM|A Chain A, Crystal Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 7 Interacting Protein 1 From Anopheles Gambiae Length = 358 Back     alignment and structure
>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha From Thermosynechococcus Elongatus Length = 240 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 1e-105
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 1e-105
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 4e-97
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 3e-93
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 3e-92
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 1e-86
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 3e-86
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 1e-83
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 2e-68
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 1e-64
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 7e-62
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 3e-55
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 1e-36
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 2e-22
1txo_A237 Putative bacterial enzyme; serine/threonine protei 5e-22
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 1e-20
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 6e-20
3rnr_A211 Stage II sporulation E family protein; structural 3e-18
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
 Score =  311 bits (797), Expect = e-105
 Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 13/302 (4%)

Query: 6   PAASVSRSNNSTGFFSKIKNSTCFSSSSSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMED 65
            A       +         +       +     G+     +  + G     G+     ED
Sbjct: 80  QADQAPEDLDMEDNDIIEAHREQIGGENLYFQAGKPIPKISLENVGCASQIGKRKE-NED 138

Query: 66  YLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRS 125
                    +      FA++DGH G     +   ++   I++     K+ +  +T A+  
Sbjct: 139 RFDFAQLTDEVL---YFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLE 195

Query: 126 TDQFILENS-----MQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDH 180
            D+    ++       L   G+TA  A++ DG +L VA+VGDSRA++C +G   ++T+DH
Sbjct: 196 IDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDH 255

Query: 181 EPH--AERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAH-LSSEPDVRHVPID 237
            P    E+ RI+K GGFV       P VNG+LA+ R+ GD  LK   + +EP+ + + + 
Sbjct: 256 TPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLH 315

Query: 238 PSI-EFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRF 296
            +   FL+L +DG+  ++ +QE  D V    DP  AA  +T +A+   ++D+ + +V+ F
Sbjct: 316 HADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPF 375

Query: 297 GQ 298
           G 
Sbjct: 376 GA 377
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
1txo_A237 Putative bacterial enzyme; serine/threonine protei 100.0
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 100.0
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 100.0
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
3rnr_A211 Stage II sporulation E family protein; structural 100.0
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.91
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.9
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.85
3f79_A255 Probable two-component response regulator; adaptor 99.81
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 99.41
3eq2_A394 Probable two-component response regulator; adaptor 98.93
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.3e-49  Score=350.25  Aligned_cols=247  Identities=32%  Similarity=0.518  Sum_probs=211.0

Q ss_pred             CCceeEEEEeeecCCCCCCCceEEEEeeccC-CceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCC-----------
Q 022365           45 SNKVSHGYHLVEGQSGHDMEDYLVAEYRKKK-NHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFW-----------  112 (298)
Q Consensus        45 ~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~-~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~-----------  112 (298)
                      ...|.+++++++|+|. .|||++++...... .....+|+|||||||+.+|.++++.+...+.+...+.           
T Consensus        21 ~~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~   99 (307)
T 2p8e_A           21 GNGLRYGLSSMQGWRV-EMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALEL   99 (307)
T ss_dssp             ETTEEEEEEEEEETSS-SCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSTTTC-----------
T ss_pred             CCCeeEEEEecCCCCC-cccceEEEEecCCCCCCCeEEEEEECCCCCHHHHHHHHHHHHHHHHhhHhhhhcccccccccc
Confidence            4569999999999976 89999986543211 2357899999999999999999999999987643222           


Q ss_pred             --cCHHHHHHHHHHHHHHHHHHhcccC--CCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChh--HH
Q 022365          113 --KDPKAAITNAYRSTDQFILENSMQL--GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ER  186 (298)
Q Consensus       113 --~~~~~~l~~a~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~  186 (298)
                        ..+...|+++|.++++.+.+.....  ...+|||++++++.++++|++||||||+|++|+|++.+||+||++.+  |+
T Consensus       100 ~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~DH~~~~~~E~  179 (307)
T 2p8e_A          100 SVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREK  179 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCeEEEEEEECCcEEEEEccCcEEEEEECCccccCCCCCCCCCHHHH
Confidence              2347889999999999998765422  35688999999999999999999999999999999999999999986  88


Q ss_pred             HHHHHcCCeeecCCCCcCccCCceeeecccCCccccC---------cccccceEEEEEeCCCCeEEEEEcCCccCCCCHH
Q 022365          187 RRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKA---------HLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQ  257 (298)
Q Consensus       187 ~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~---------~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~  257 (298)
                      .||...|+.+..     .+.++.+.+||+||+..+|.         .+.++|++..+++.++|++||||||||||+++++
T Consensus       180 ~rI~~~gg~v~~-----~rv~g~l~ltRalGd~~~k~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~  254 (307)
T 2p8e_A          180 ERIQNAGGSVMI-----QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNE  254 (307)
T ss_dssp             HHHHHTTCCEET-----TEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHH
T ss_pred             HHHHHcCCEEEe-----CcccCeEeccccccCHHHhcCcccCCCCCeEeccCeEEEEEcCCCCeEEEEECCCcccCCCHH
Confidence            999999998763     36677789999999988763         3578999999999998568999999999999999


Q ss_pred             HHHHhHcC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022365          258 EAVDLVKP----IKDPQAAAKRLTTEALARKSKDDISCIVIRFG  297 (298)
Q Consensus       258 ei~~~~~~----~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~  297 (298)
                      ++.+++..    ..+++.+|+.|++.|+.+|+.||+|||||++.
T Consensus       255 ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~  298 (307)
T 2p8e_A          255 ELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNMSIVLVCFS  298 (307)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCSCEEEEEEEC-
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCeEEEEEECC
Confidence            99999975    57899999999999999999999999999985
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 298
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 9e-48
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 3e-28
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (403), Expect = 9e-48
 Identities = 81/293 (27%), Positives = 126/293 (43%), Gaps = 35/293 (11%)

Query: 32  SSSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKKKN-HVLGLFAIFDGHLG 90
                 K  ++   N + +G   ++G    +MED   A             FA++DGH G
Sbjct: 5   DKPKMEKHNAQGQGNGLRYGLSSMQGWR-VEMEDAHTAVIGLPSGLESWSFFAVYDGHAG 63

Query: 91  DRVPTYLKDNLFNNILEESNFWKDP--------KAAITNAYRSTDQF---ILENSMQLGP 139
            +V  Y  ++L ++I    +F            K  I   +   D+    + E       
Sbjct: 64  SQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADR 123

Query: 140 GGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEP--HAERRRIEKQGGFVT 197
            GSTAV  ++I  +  +  N GDSR ++C     +  T DH+P    E+ RI+  GG V 
Sbjct: 124 SGSTAV-GVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSV- 181

Query: 198 SLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSI----------EFLILAS 247
                + RVNG LAV+RA GD   K      P  + V  +P +          +F+ILA 
Sbjct: 182 ----MIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILAC 237

Query: 248 DGLWKVMKNQEAVDLVKPI----KDPQAAAKRLTTEALARKSKDDISCIVIRF 296
           DG+W VM N+E  D V+       D +     +    L + S+D++S I+I F
Sbjct: 238 DGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICF 290
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-50  Score=352.93  Aligned_cols=260  Identities=29%  Similarity=0.496  Sum_probs=217.4

Q ss_pred             ccCCCCCccCCCCCceeEEEEeeecCCCCCCCceEEEEeeccC-CceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcC-
Q 022365           33 SSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKKK-NHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESN-  110 (298)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~-~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~-  110 (298)
                      .|++.+......++.++||+++++|+|+ .|||++.+...... .++..||||||||||+.+|.++++.+...+.+... 
T Consensus         6 ~p~~~k~~~~~~~~~~~~g~~s~~G~R~-~~ED~~~~~~~~~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~   84 (295)
T d1a6qa2           6 KPKMEKHNAQGQGNGLRYGLSSMQGWRV-EMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDF   84 (295)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEEEETSS-SCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHH
T ss_pred             CCCcccCcccccCCceEEEEEeCccCCC-cccCeeEEEcccCCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhh
Confidence            3444443333345679999999999998 89999987654333 35678999999999999999999999998876321 


Q ss_pred             -------CCcCHHHHHHHHHHHHHHHHHHhcc--cCCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCC
Q 022365          111 -------FWKDPKAAITNAYRSTDQFILENSM--QLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHE  181 (298)
Q Consensus       111 -------~~~~~~~~l~~a~~~~~~~l~~~~~--~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~  181 (298)
                             ....+.++|+++|.++++.+.....  .....+|||++++++.++++|++|+||||+|++|++++.+||.||+
T Consensus        85 ~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~~~~~lT~dH~  164 (295)
T d1a6qa2          85 KGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHK  164 (295)
T ss_dssp             HCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCC
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecccceeeccccC
Confidence                   1124677899999999988865433  2245678999999999999999999999999999999999999999


Q ss_pred             Chh--HHHHHHHcCCeeecCCCCcCccCCceeeecccCCccccC---------cccccceEEEEEeCC-CCeEEEEEcCC
Q 022365          182 PHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKA---------HLSSEPDVRHVPIDP-SIEFLILASDG  249 (298)
Q Consensus       182 ~~~--e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~---------~~~~~p~~~~~~l~~-~~d~lvL~SDG  249 (298)
                      +.+  |++|+...||.+..     ++.++.+.+||+||+..+|.         .+.+.|++..+.+.. ++++|||||||
T Consensus       165 ~~~~~E~~Ri~~~gg~v~~-----~r~~g~l~~tRa~Gd~~~k~~~~~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDG  239 (295)
T d1a6qa2         165 PSNPLEKERIQNAGGSVMI-----QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDG  239 (295)
T ss_dssp             TTSHHHHHHHHHTTCCEET-----TEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHH
T ss_pred             cccHHHHhhHhhcCCcccc-----cccCCceeeeeccCcHHhhhccccCcccccccccccceEEEeecccceeEeeecCc
Confidence            987  99999999998874     57888899999999998873         478999999999864 34699999999


Q ss_pred             ccCCCCHHHHHHhHcC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeCC
Q 022365          250 LWKVMKNQEAVDLVKP----IKDPQAAAKRLTTEALARKSKDDISCIVIRFGQ  298 (298)
Q Consensus       250 l~d~l~~~ei~~~~~~----~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~~  298 (298)
                      |||.|+++|+.+++..    ..+++.+|+.|++.|+.+++.||+|||||+|+.
T Consensus       240 l~d~l~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~gs~DNiTvivv~~~~  292 (295)
T d1a6qa2         240 IWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPN  292 (295)
T ss_dssp             HHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCSCEEEEEEECTT
T ss_pred             ccccCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCeEEEEEeccC
Confidence            9999999999998753    478999999999999999999999999999963
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure