Citrus Sinensis ID: 022434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Secondary Structure (PSIPRED)
ccccccEEEEEccccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcEEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHccEEEEcccccHHHHHHHHHHHccccccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
MEEKMKVMGvvgsgqmgsgiaqlgvmdgldvwlvdtdpdALVRATKSISSSIQKFVSkgqlsqavgtdaprrlrctsnlkdlhsADIIVEAIVESEDVKKKLFSELDKITKASAIlasntssisitrlasatsrpcqvigmhfmnppplMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGvatkedidagmklgtnqpmgplqladfIGLDVCLSIMKVLhtglgdskyapcpllVQYVDagrlgkkrgigvfdyrrvpesvkpnarl
Flexible Loop (DISEMBL)
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISssiqkfvskgqlsqavgtdaprrLRCTsnlkdlhsadIIVEAIVESEDVKKKLFSELDKITKasailasntssisiTRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALaerfgktvvcSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTglgdskyaPCPLLVQYVDAGRLGKKRGigvfdyrrvpesvkpnarl
Low Complexity Region (SEG)
MEEkmkvmgvvgsgqmgsgIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Disordered region (IsUnstruct)
***************MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI******F****************RLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR***********
Disordered Region (DISOPRED)
***KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVS*****QAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR***********
Disordered Region (DISEMBL)
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Disordered Region (DISPRO)
**EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q45223	293	3-hydroxybutyryl-CoA dehy	yes	no	0.959	0.972	0.547	1e-86
P45856	287	Probable 3-hydroxybutyryl	yes	no	0.952	0.986	0.522	5e-80
Q9RVG1	278	Probable 3-hydroxybutyryl	yes	no	0.915	0.978	0.544	2e-79
P77851	281	3-hydroxybutyryl-CoA dehy	yes	no	0.946	1.0	0.512	3e-76
P52041	282	3-hydroxybutyryl-CoA dehy	yes	no	0.949	1.0	0.517	4e-75
P45364	281	3-hydroxybutyryl-CoA dehy	yes	no	0.939	0.992	0.480	3e-67
P41938	309	Probable 3-hydroxyacyl-Co	yes	no	0.949	0.912	0.380	2e-53
O53753	286	3-hydroxybutyryl-CoA dehy	yes	no	0.952	0.989	0.397	2e-52
Q61425	314	Hydroxyacyl-coenzyme A de	yes	no	0.946	0.894	0.406	4e-52
Q16836	314	Hydroxyacyl-coenzyme A de	yes	no	0.915	0.866	0.404	2e-51

>sp|Q45223|HBD_BRAJA 3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum (strain USDA 110) GN=hbdA PE=3 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/285 (54%), Positives = 199/285 (69%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
           M   +K +GV+G+GQMG+GIA +  + G DV L D   D L     +I+ ++ + VSK  
Sbjct: 1   MAAVIKKVGVIGAGQMGNGIAHVAALAGFDVVLNDVSADRLKSGMATINGNLARQVSKKV 60

Query: 61  LSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
           +++   T A  R+     L DL   D+++E  VE E+VK+K+F EL  + K  AI+AS+T
Sbjct: 61  VTEEAKTKALSRIVAAEKLDDLADCDLVIETAVEKEEVKRKIFHELCAVLKPEAIVASDT 120

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           SSISITRLA+AT RP + IG+HFMNP PLM+LVE+IRG  T D TF A+K    + GK V
Sbjct: 121 SSISITRLAAATDRPERFIGIHFMNPVPLMELVELIRGIATDDATFEASKEFVAKLGKQV 180

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240
             S+D+  FIVNRIL+PMINEA +TLY GV   E IDA MKLG + PMGPL+LADFIGLD
Sbjct: 181 AVSEDFPAFIVNRILLPMINEAIYTLYEGVGNVEAIDAAMKLGAHHPMGPLELADFIGLD 240

Query: 241 VCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            CLSIM+VLH GL DSKY PCPLLV+YV+AG LG+K   G +DYR
Sbjct: 241 TCLSIMQVLHEGLADSKYRPCPLLVKYVEAGWLGRKTQRGFYDYR 285

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5EC: 7

>sp|P45856|HBD_BACSU Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgB PE=2 SV=1

 Score =  298 bits (762), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/283 (52%), Positives = 189/283 (66%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K + V G+GQMGSGIAQ     G  V + D +P+A     K +   + +   KG+ ++
Sbjct: 2   EIKQIMVAGAGQMGSGIAQTAADAGFYVRMYDVNPEAAEAGLKRLKKQLARDAEKGKRTE 61

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                   R+  +  L++   ADI++EAI E+   K ++F  LD+I     ILASNTSS+
Sbjct: 62  TEVKSVINRISISQTLEEAEHADIVIEAIAENMAAKTEMFKTLDRICPPHTILASNTSSL 121

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            IT +A+ T+RP +VIGMHFMNP P+MKLVEVIRG  TS+ET     ALAE+ GKT V  
Sbjct: 122 PITEIAAVTNRPQRVIGMHFMNPVPVMKLVEVIRGLATSEETALDVMALAEKMGKTAVEV 181

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            D+ GF+ NR+L+PMINEA + +Y GVA  E ID  MKLG N PMGPL LADFIGLD CL
Sbjct: 182 NDFPGFVSNRVLLPMINEAIYCVYEGVAKPEAIDEVMKLGMNHPMGPLALADFIGLDTCL 241

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286
           SIM+VLH+GLGDSKY PCPLL +YV AG LGKK G G +DY  
Sbjct: 242 SIMEVLHSGLGDSKYRPCPLLRKYVKAGWLGKKSGRGFYDYEE 284

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q9RVG1|HBD_DEIRA Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=hbd PE=3 SV=1

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/281 (54%), Positives = 185/281 (65%), Gaps = 9/281 (3%)

Query: 8   MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGT 67
            GV+G+GQMG GIAQ+    G DV + D   + L R    I  S+ K   KG+L     T
Sbjct: 3   FGVIGAGQMGGGIAQVAAQSGFDVVVHDQKQEFLDRGKGVIEKSLGKLHEKGKL-----T 57

Query: 68  DAPR----RLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           DAP     R+  T++L+D    D++VEAIVE++ +K  LF +L +I K   ILASNTSSI
Sbjct: 58  DAPETVLGRIHFTTDLQDFADCDLVVEAIVENQQIKNDLFKQLGQIVKPEGILASNTSSI 117

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            IT LA+A+ RP Q IGMHFMNP PLM+LVEVIRG  TSDET R     AE+ GKT +  
Sbjct: 118 PITALATASGRPAQFIGMHFMNPVPLMQLVEVIRGYQTSDETARIVTETAEKLGKTPLSC 177

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            D+ GF+ NRILMPM+NEA   +  GVA  E ID  MKLG N PMGPL LADFIGLD CL
Sbjct: 178 NDFPGFVSNRILMPMLNEAIQCVMEGVAEPEAIDGIMKLGMNHPMGPLTLADFIGLDTCL 237

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +IM+VLH GLGD KY P PLL + V AG LG+K G G + Y
Sbjct: 238 AIMEVLHQGLGDDKYRPSPLLRKMVQAGLLGRKSGEGFYKY 278

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P77851|HBD_THETC 3-hydroxybutyryl-CoA dehydrogenase OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=hbd PE=3 SV=2

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 144/281 (51%), Positives = 193/281 (68%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           M+ + V+G+G MGSGIAQ+   +G +V L D D   + +   +I  ++Q+ V KG+++  
Sbjct: 1   MQKICVIGAGTMGSGIAQVFAQNGFEVILRDIDMKFVEKGFGTIEKNLQRNVDKGKITAD 60

Query: 65  VGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
              +   R+R T+NL+D   AD +VEA +E+ D+KK++F ELD+I K   ILASNTSS+S
Sbjct: 61  EKNEILSRIRGTTNLEDAKEADFVVEAAIENMDLKKQIFKELDEICKMETILASNTSSLS 120

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           IT +ASAT RP +VIGMHF NP P+MKLVEVI+G  TS++TF   + LA +  KT +  +
Sbjct: 121 ITEIASATKRPEKVIGMHFFNPVPVMKLVEVIKGLKTSEQTFNVVRELALKVDKTPIEVK 180

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           +  GF+VNRIL+PMINEA   L  GVAT EDID  MKLG N P+GPL L+D IG DV L+
Sbjct: 181 EAPGFVVNRILIPMINEAIGILADGVATAEDIDEAMKLGANHPIGPLALSDLIGNDVVLA 240

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           IM VL+   GDSKY P PLL + V  G LG+K G G F+Y+
Sbjct: 241 IMNVLYEEYGDSKYRPHPLLKKMVRGGLLGRKTGKGFFEYK 281

Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) (taxid: 580327)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P52041|HBD_CLOAB 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=hbd PE=3 SV=2

 Score =  281 bits (719), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/282 (51%), Positives = 188/282 (66%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           MK + V+G+G MGSGIAQ     G +V L D   + + R    I+ ++ K V KG++ +A
Sbjct: 1   MKKVCVIGAGTMGSGIAQAFAAKGFEVVLRDIKDEFVDRGLDFINKNLSKLVKKGKIEEA 60

Query: 65  VGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
              +   R+  T +L      D+++EA VE  D+KK++F++LD I K   ILASNTSS+S
Sbjct: 61  TKVEILTRISGTVDLNMAADCDLVIEAAVERMDIKKQIFADLDNICKPETILASNTSSLS 120

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           IT +ASAT RP +VIGMHF NP P+MKLVEVIRG  TS ETF A K  +   GK  V   
Sbjct: 121 ITEVASATKRPDKVIGMHFFNPAPVMKLVEVIRGIATSQETFDAVKETSIAIGKDPVEVA 180

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           +  GF+VNRIL+PMINEA   L  G+A+ EDID  MKLG N PMGPL+L DFIGLD+CL+
Sbjct: 181 EAPGFVVNRILIPMINEAVGILAEGIASVEDIDKAMKLGANHPMGPLELGDFIGLDICLA 240

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286
           IM VL++  GDSKY P  LL +YV AG LG+K G G +DY +
Sbjct: 241 IMDVLYSETGDSKYRPHTLLKKYVRAGWLGRKSGKGFYDYSK 282

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P45364|HBD_CLODI 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium difficile GN=hbd PE=3 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 134/279 (48%), Positives = 176/279 (63%)

Query: 8   MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGT 67
           + V+GSG MGSGI Q     G DV L      A+ +    +  ++ K V+KG+  +A   
Sbjct: 3   LAVIGSGTMGSGIVQTFASCGHDVCLKSRTQGAIDKCLALLDKNLTKLVTKGKWMKATKA 62

Query: 68  DAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR 127
           +    +  T+N +DL   D+I+EA VE  ++KK +F  LD++ K   ILA+NTSS+SIT 
Sbjct: 63  EILSHVSSTTNYEDLKDMDLIIEASVEDMNIKKDVFKLLDELCKEDTILATNTSSLSITE 122

Query: 128 LASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYA 187
           +AS+T RP +VIGMHF NP P+MKLVEVI G  TS  TF     L++   K  V   +  
Sbjct: 123 IASSTKRPDKVIGMHFFNPVPMMKLVEVISGQLTSKVTFDTVFELSKSINKVPVDVSESP 182

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GF+VNRIL+PMINEA      GVA+KE+ID  MKLG N PMGPL L D IGLDV L+IM 
Sbjct: 183 GFVVNRILIPMINEAVGIYADGVASKEEIDEAMKLGANHPMGPLALGDLIGLDVVLAIMN 242

Query: 248 VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286
           VL+T  GD+KY   PLL + V A +LG+K  IG +DY +
Sbjct: 243 VLYTEFGDTKYTAHPLLAKMVRANQLGRKTKIGFYDYNK 281

Clostridium difficile (taxid: 1496)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P41938|HCDH2_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 OS=Caenorhabditis elegans GN=B0272.3 PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 172/289 (59%), Gaps = 7/289 (2%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           K+  + ++G+G MGSGIAQ+     L+V +VD++  AL +A + I++S+++   K     
Sbjct: 21  KINNVTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKAQQGIANSLKRVAKKKHADD 80

Query: 64  AVGTDAP-----RRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117
           A    A       R++ ++N+ D +  AD+++EAIVE+ D+K+KLF+E++   K + ++ 
Sbjct: 81  AAAQTALVSSVLDRIKMSTNVSDSVKDADLVIEAIVENIDIKRKLFAEVEVAAKPTTLIT 140

Query: 118 SNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG 177
           +NTSS+ +  +        +  G+HF NP P+MKL+EV+R  +TSD TF       +  G
Sbjct: 141 TNTSSLRLADIGLNLKDKSRFGGLHFFNPVPMMKLLEVVRHTETSDATFNQLVDYGKTVG 200

Query: 178 KTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI 237
           KT V  +D  GFIVNR+L+P + EA      G A+ EDID  MKLG   PMGP +L+D++
Sbjct: 201 KTTVACKDTPGFIVNRLLVPYMFEALRLYERGDASMEDIDVAMKLGAGYPMGPFELSDYV 260

Query: 238 GLDVCLSIMKVLHTGLGDS-KYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           GLD C  IM   H    +   + P PLL   VD+G+ G+K G G + Y+
Sbjct: 261 GLDTCKFIMDGWHAQYPEEVAFTPSPLLNSLVDSGKNGRKSGEGFYKYK 309

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O53753|FADB2_MYCTU 3-hydroxybutyryl-CoA dehydrogenase OS=Mycobacterium tuberculosis GN=fadB2 PE=1 SV=1

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 180/287 (62%), Gaps = 4/287 (1%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS-ISSSIQKFVSKG 59
           M + ++ +GVVG+GQMGSGIA++    G++V + +   +AL+ A ++ I  S+++ VS G
Sbjct: 1   MSDAIQRVGVVGAGQMGSGIAEVSARAGVEVTVFEP-AEALITAGRNRIVKSLERAVSAG 59

Query: 60  QLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILAS 118
           ++++     A   L  T++L DL    +++EA+VE E VK ++F+ELD++ T   A+LAS
Sbjct: 60  KVTERERDRALGLLTFTTDLNDLSDRQLVIEAVVEDEAVKSEIFAELDRVVTDPDAVLAS 119

Query: 119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER-FG 177
           NTSSI I ++A+AT +P +V+G+HF NP P++ LVE++R   T +     T+  A    G
Sbjct: 120 NTSSIPIMKVAAATKQPQRVLGLHFFNPVPVLPLVELVRTLVTDEAAAARTEEFASTVLG 179

Query: 178 KTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI 237
           K VV   D +GF+VN +L+P +  A   +  G AT ED+D  +  G + PMGPL+L+D +
Sbjct: 180 KQVVRCSDRSGFVVNALLVPYLLSAIRMVEAGFATVEDVDKAVVAGLSHPMGPLRLSDLV 239

Query: 238 GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           GLD    I   +     +  Y P PLL++ V+AG+LGKK G G + Y
Sbjct: 240 GLDTLKLIADKMFEEFKEPHYGPPPLLLRMVEAGQLGKKSGRGFYTY 286

Catalyzes the NAD-dependent dehydration of beta-hydroxybutyryl-CoA to acetoacetyl-CoA in vitro at pH 10. Also catalyzes the reverse reaction albeit in a lower pH range of 5.5-6.5. The reverse reaction is able to use NADPH as well as NADH.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q61425|HCDH_MOUSE Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus GN=Hadh PE=1 SV=2

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 161/288 (55%), Gaps = 7/288 (2%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           +K + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S+++   K      
Sbjct: 27  IKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENP 86

Query: 65  VGTD--APRRLRCTSNLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118
              D    + L C S   D    +HS D++VEAIVE+  +K +LF  LDK      I AS
Sbjct: 87  KAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENLKLKNELFQRLDKFAAEHTIFAS 146

Query: 119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGK 178
           NTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF +     +  GK
Sbjct: 147 NTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKTPMTSQKTFESLVDFCKTLGK 206

Query: 179 TVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238
             V  +D  GFIVNR+L+P + EA      G A+KEDID  MKLG   PMGP +L D++G
Sbjct: 207 HPVSCKDTPGFIVNRLLVPYLIEAVRLHERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 266

Query: 239 LDVCLSIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           LD    I+   H    ++  + P P +   V   +LGKK G G + Y+
Sbjct: 267 LDTTKFILDGWHEMEPENPLFQPSPSMNNLVAQKKLGKKTGEGFYKYK 314

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q16836|HCDH_HUMAN Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=1 SV=3

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 163/297 (54%), Gaps = 25/297 (8%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQK---------- 54
           +K + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S++K          
Sbjct: 27  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENL 86

Query: 55  -----FVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKI 109
                FV K   + A  TDA   +         HS D++VEAIVE+  VK +LF  LDK 
Sbjct: 87  KAGDEFVEKTLSTIATSTDAASVV---------HSTDLVVEAIVENLKVKNELFKRLDKF 137

Query: 110 TKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRAT 169
                I ASNTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF + 
Sbjct: 138 AAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESL 197

Query: 170 KALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMG 229
              ++  GK  V  +D  GFIVNR+L+P + EA      G A+KEDID  MKLG   PMG
Sbjct: 198 VDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMG 257

Query: 230 PLQLADFIGLDVCLSIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           P +L D++GLD    I+   H    ++  + P P L + V   + GKK G G + Y+
Sbjct: 258 PFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 314

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
225461498	296	PREDICTED: 3-hydroxybutyryl-CoA dehydrog	0.989	0.993	0.789	1e-137
224128091	295	predicted protein [Populus trichocarpa]	0.986	0.993	0.795	1e-136
147838328	301	hypothetical protein VITISV_020497 [Viti	0.956	0.943	0.806	1e-135
255574666	296	3-hydroxyacyl-CoA dehyrogenase, putative	0.989	0.993	0.789	1e-134
297830084	294	hypothetical protein ARALYDRAFT_897803 [	0.983	0.993	0.792	1e-134
15232545	294	3-hydroxybutyryl-CoA dehydrogenase [Arab	0.976	0.986	0.793	1e-133
312283461	297	unnamed protein product [Thellungiella h	0.962	0.962	0.804	1e-132
449457019	296	PREDICTED: 3-hydroxybutyryl-CoA dehydrog	0.989	0.993	0.751	1e-129
351722947	319	peroxisomal 3-hydroxyacyl-CoA dehydrogen	0.989	0.921	0.744	1e-127
195648550	299	3-hydroxybutyryl-CoA dehydrogenase [Zea	0.989	0.983	0.710	1e-124

>gi|225461498|ref|XP_002285093.1| PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Vitis vinifera] gi|302142978|emb|CBI20273.3| unnamed protein product [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/294 (78%), Positives = 265/294 (90%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +++ +GVVG GQMGSGIAQL  + G+DVWL DTD +AL RATKSIS+SIQ+FVSKGQLSQ
Sbjct: 3   EVRSIGVVGGGQMGSGIAQLAAVHGVDVWLHDTDAEALTRATKSISTSIQRFVSKGQLSQ 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            V T A +RLRCTSNL++L SAD+I+EAIVESED KKKLFSELDK+ K SAILASNTSSI
Sbjct: 63  EVATGALQRLRCTSNLEELCSADVIIEAIVESEDAKKKLFSELDKLAKGSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLA ATSRPCQVIGMHFMNPPP+MKLVE++RGADTS+ETF  TKALAERFGKTV+CS
Sbjct: 123 SITRLAFATSRPCQVIGMHFMNPPPIMKLVEIVRGADTSEETFNLTKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY+GFI+NR+LMPMINEAFFTLYTGVATK+DID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDYSGFIINRVLMPMINEAFFTLYTGVATKKDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVLH GLGDSKY PCPLL QYVDAGRLG+KRGIGV++YR+V  +   ++R+
Sbjct: 243 SIMKVLHAGLGDSKYVPCPLLQQYVDAGRLGRKRGIGVYNYRKVTGATNLSSRI 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128091|ref|XP_002329079.1| predicted protein [Populus trichocarpa] gi|222869748|gb|EEF06879.1| predicted protein [Populus trichocarpa]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/294 (79%), Positives = 263/294 (89%), Gaps = 1/294 (0%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVGSGQMGSGIAQL  + GLDVWL+DTDP AL RATKSI+S+I + +SKGQLSQ
Sbjct: 3   EIKAVGVVGSGQMGSGIAQLAAVHGLDVWLLDTDPAALSRATKSITSNIHRLISKGQLSQ 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A G DA   LRC+SNL++L  ADI++EAIVESED KK LF ELD+I K+SAILASNTSSI
Sbjct: 63  AAGNDALGHLRCSSNLEELRMADIVIEAIVESEDAKKTLFLELDRIAKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASATSRP QVIGMHFMNPPP+MKLVE++RGADTSD TF ATKALAERFGKTV+CS
Sbjct: 123 SITRLASATSRPRQVIGMHFMNPPPIMKLVEIVRGADTSDNTFYATKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QD++GF+VNRILMPMINEAF+ LYTGVATKEDID GMKLGTN PMGPLQLADFIGLDVCL
Sbjct: 183 QDFSGFVVNRILMPMINEAFYALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVL TGLGD+KYAPCPLLVQ+VDAGRLG+KRGIGV+DY R  E VK +ARL
Sbjct: 243 SIMKVLQTGLGDNKYAPCPLLVQFVDAGRLGRKRGIGVYDY-RAAEQVKRSARL 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838328|emb|CAN67802.1| hypothetical protein VITISV_020497 [Vitis vinifera]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/284 (80%), Positives = 258/284 (90%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           + + +GVVG GQMGSGIAQL  + G+BVWL DTD +AL RATKSIS+SIQ+FVSKGQLSQ
Sbjct: 3   EXRSIGVVGGGQMGSGIAQLAAVHGVBVWLHDTDAEALTRATKSISTSIQRFVSKGQLSQ 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            V T A +RLRCTSNL++L SAD+I+EAIVESED KKKLFSELDK+ K SAILASNTSSI
Sbjct: 63  EVATGALQRLRCTSNLEELCSADVIIEAIVESEDAKKKLFSELDKLAKGSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLA ATSRP QVIGMHFMNPPP+MKLVE++RGADTS+ETF  TKALAERFGKTV+CS
Sbjct: 123 SITRLAXATSRPXQVIGMHFMNPPPIMKLVEIVRGADTSEETFNLTKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY+GFI+NRILMPMINEAFFTLYTGVATK+DID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDYSGFIINRILMPMINEAFFTLYTGVATKKDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287
           SIMKVLH GLGDSKY PCPLL QYVDAGRLG+KRGIGV++YR++
Sbjct: 243 SIMKVLHAGLGDSKYVPCPLLQQYVDAGRLGRKRGIGVYNYRKL 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574666|ref|XP_002528242.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223532328|gb|EEF34127.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/294 (78%), Positives = 261/294 (88%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +MK +GVVGSGQMGSGIAQL  + G+DVWL+DTDP AL RA+KSIS +I + +SKG LSQ
Sbjct: 3   EMKRIGVVGSGQMGSGIAQLAAVHGVDVWLLDTDPSALSRASKSISDNILRLISKGHLSQ 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           AVG +A   L CTSN ++L +ADI+VEAIVESEDVKKKLF ELD+I K+SAILASNTSSI
Sbjct: 63  AVGDNALGCLHCTSNPEELCTADIVVEAIVESEDVKKKLFLELDRIVKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASATSR  QVIGMHFMNPPP+MKLVE+IRGADTSDETF ATKALAERFGKTV+CS
Sbjct: 123 SITRLASATSRASQVIGMHFMNPPPVMKLVEIIRGADTSDETFYATKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QD++GFIVNRILMPMINEAF  LYTGVA+KEDID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDFSGFIVNRILMPMINEAFHALYTGVASKEDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVLH GLGDSKY PCPLLVQYVDAGRLG+K+GIGV++YR+  E  KP+ RL
Sbjct: 243 SIMKVLHAGLGDSKYLPCPLLVQYVDAGRLGRKQGIGVYNYRKTTEQAKPSGRL 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830084|ref|XP_002882924.1| hypothetical protein ARALYDRAFT_897803 [Arabidopsis lyrata subsp. lyrata] gi|297328764|gb|EFH59183.1| hypothetical protein ARALYDRAFT_897803 [Arabidopsis lyrata subsp. lyrata]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/294 (79%), Positives = 260/294 (88%), Gaps = 2/294 (0%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +MK +GVVG+GQMGSGIAQL    GLDVWL+D D DAL RAT +ISSS+++FVSKG +S+
Sbjct: 3   EMKCVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISK 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            +G DA  RLR TSNL+DL SADIIVEAIVESED+KKKLF +LD I K+ AILASNTSSI
Sbjct: 63  EIGDDAMHRLRVTSNLEDLSSADIIVEAIVESEDIKKKLFKDLDGIAKSCAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASAT RP QVIGMHFMNPPP+MKLVE+IRGADTS+ETF ATKALAERFGKT VCS
Sbjct: 123 SITRLASATKRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFIATKALAERFGKTTVCS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDYAGFIVNRILMPMINEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCL
Sbjct: 183 QDYAGFIVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           S+MKVLH GLGDSKYAPCPLLVQYVDAGRLG+KRG+GV+DYR+  +  KP+ RL
Sbjct: 243 SVMKVLHEGLGDSKYAPCPLLVQYVDAGRLGRKRGVGVYDYRKATQ--KPSPRL 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232545|ref|NP_188147.1| 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] gi|9294256|dbj|BAB02158.1| 3-hydroxybutyryl-CoA dehydrogenase-like protein [Arabidopsis thaliana] gi|23306408|gb|AAN17431.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] gi|24899761|gb|AAN65095.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] gi|332642120|gb|AEE75641.1| 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/290 (79%), Positives = 256/290 (88%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +MK +GVVG+GQMGSGIAQL    GLDVWL+D D DAL RAT +ISSS+++FVSKG +S+
Sbjct: 3   EMKSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISK 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            VG DA  RLR TSNL+DL SADIIVEAIVESED+KKKLF +LD I K+SAILASNTSSI
Sbjct: 63  EVGDDAMHRLRLTSNLEDLCSADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASAT RP QVIGMHFMNPPP+MKLVE+IRGADTS+ETF ATK LAERFGKT VCS
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTVCS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDYAGF+VNRILMPMINEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCL
Sbjct: 183 QDYAGFVVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP 293
           S+MKVLH GLGDSKYAPCPLLVQYVDAGRLG+KRG+GV+DYR   + + P
Sbjct: 243 SVMKVLHEGLGDSKYAPCPLLVQYVDAGRLGRKRGVGVYDYREATQKLSP 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283461|dbj|BAJ34596.1| unnamed protein product [Thellungiella halophila]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/286 (80%), Positives = 254/286 (88%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVG+GQMGSGIAQL   +GLDVWL+D D DAL RAT +ISSS+++FVSKG +++
Sbjct: 3   EIKCVGVVGAGQMGSGIAQLAATNGLDVWLMDADRDALSRATAAISSSVKRFVSKGLIAK 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
             G DA  RLR TSNL+DL SADIIVEAIVESEDVKKKLF +LD I K+SAILASNTSSI
Sbjct: 63  EAGDDAMHRLRLTSNLQDLCSADIIVEAIVESEDVKKKLFKDLDGIAKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASAT RP QVIGMHFMNPPP+MKLVE+IRG DTSDETF ATKALAERFGKT VCS
Sbjct: 123 SITRLASATQRPSQVIGMHFMNPPPIMKLVEIIRGTDTSDETFIATKALAERFGKTTVCS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDYAGFIVNRILMPMINEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCL
Sbjct: 183 QDYAGFIVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE 289
           S+MKVLH GLGDSKYAPCPLLVQYVDAGRLG+KRGIGV+DYR   +
Sbjct: 243 SVMKVLHQGLGDSKYAPCPLLVQYVDAGRLGRKRGIGVYDYRNATQ 288

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457019|ref|XP_004146246.1| PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase-like [Cucumis sativus] gi|449495515|ref|XP_004159864.1| PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase-like [Cucumis sativus]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/294 (75%), Positives = 258/294 (87%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVG GQMGSGIAQL    G  VWL+D+D  AL +AT SISSSIQ+ VS+  LS+
Sbjct: 3   EIKAIGVVGGGQMGSGIAQLAATYGHQVWLIDSDSAALAKATDSISSSIQRLVSRNLLSR 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            +G +A +RL+ +++LK+LHSAD+I+EAI+ESEDVK+KLF ELDKI K S+ILASNTSSI
Sbjct: 63  EIGANALQRLKFSTDLKELHSADVIIEAILESEDVKRKLFVELDKIAKRSSILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            ITRLASAT+RP QVIGMHFMNPPP+MKLVE++RGADTS+ETF A K LAER GKTV+CS
Sbjct: 123 PITRLASATTRPEQVIGMHFMNPPPVMKLVEIVRGADTSNETFDAIKILAERLGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY+GFIVNRILMPMINEAFF LYTGVATKEDID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDYSGFIVNRILMPMINEAFFALYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVLH+GLGD+KYAPCPLLVQYVDAGRLG+KR IGV+DYR++PE  K  +RL
Sbjct: 243 SIMKVLHSGLGDNKYAPCPLLVQYVDAGRLGRKRRIGVYDYRKLPEPDKSKSRL 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722947|ref|NP_001234958.1| peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max] gi|167963343|dbj|BAG09365.1| peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/294 (74%), Positives = 258/294 (87%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVGSGQMGSGIAQ+  M G+DVWL D DP AL +A+ SISSSI +FVSK  +SQ
Sbjct: 26  EVKRIGVVGSGQMGSGIAQVAAMHGIDVWLHDLDPQALSKASSSISSSINRFVSKNHISQ 85

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
             G DA +RLR T++L+DL  AD+I+EAIVESEDVKK LF++LD+I K+SAILASNTSSI
Sbjct: 86  VAGADALKRLRLTTDLEDLQLADLIIEAIVESEDVKKSLFAQLDRIAKSSAILASNTSSI 145

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           S+TRLA++TSRP QVIGMHFMNPPP+MKL+E++RGADTS+ETF ATKAL+ER GK V+ S
Sbjct: 146 SVTRLATSTSRPRQVIGMHFMNPPPVMKLIEIVRGADTSEETFVATKALSERLGKVVITS 205

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            DY+GFIVNRILMPMINEAFF LYTGVATKEDID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 206 HDYSGFIVNRILMPMINEAFFALYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCL 265

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIM+VLH GLGD+KYAPCPLLVQYVDAGRLG+KRGIGV++Y + P S K ++RL
Sbjct: 266 SIMRVLHAGLGDNKYAPCPLLVQYVDAGRLGRKRGIGVYEYSKDPRSTKSSSRL 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195648550|gb|ACG43743.1| 3-hydroxybutyryl-CoA dehydrogenase [Zea mays]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/294 (71%), Positives = 250/294 (85%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++  +GV+G+GQMGSGIAQL    G  V L+D DP AL RA  SIS+S+++  +KGQLSQ
Sbjct: 6   EIAAVGVIGAGQMGSGIAQLAAGGGCAVLLLDADPTALSRAVVSISASLRRLAAKGQLSQ 65

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A   D+ +R+RC S ++DL  AD+++EA+VE+EDVKKKLF ELDK+TK SAILASNTSSI
Sbjct: 66  AACEDSIKRIRCVSAVQDLRDADLVIEAVVENEDVKKKLFVELDKVTKPSAILASNTSSI 125

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           S+TRLASAT RP QVIGMHF NPPP+MKL+EVIRGADTSDE F A ++ +ER GK+V+CS
Sbjct: 126 SVTRLASATKRPSQVIGMHFFNPPPVMKLIEVIRGADTSDEVFAAVRSFSERLGKSVICS 185

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY GFIVNRILMPMINEAF+ LYTGVATKEDIDAGMKLGTN PMGPLQLADFIGLDVCL
Sbjct: 186 QDYPGFIVNRILMPMINEAFWALYTGVATKEDIDAGMKLGTNHPMGPLQLADFIGLDVCL 245

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           S+++VLH+GLGD+KY+PCPLLVQYVDAGRLGKKRG+GV+ Y   P SV+P + L
Sbjct: 246 SVLRVLHSGLGDNKYSPCPLLVQYVDAGRLGKKRGVGVYSYGHRPSSVRPKSSL 299

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2087120	294	AT3G15290 [Arabidopsis thalian	0.922	0.931	0.795	1.9e-113
TIGR_CMR|BA_5588	283	BA_5588 "3-hydroxyacyl-CoA deh	0.892	0.936	0.528	1.9e-67
TIGR_CMR|SPO_0717	291	SPO_0717 "3-hydroxybutyryl-CoA	0.905	0.924	0.514	5.1e-67
TIGR_CMR|CHY_1603	283	CHY_1603 "3-hydroxybutyryl-CoA	0.892	0.936	0.498	5.2e-65
DICTYBASE|DDB_G0280465	299	DDB_G0280465 "3-hydroxyacyl-Co	0.888	0.882	0.522	3.7e-64
TIGR_CMR|CHY_1292	284	CHY_1292 "3-hydroxybutyryl-CoA	0.892	0.933	0.490	1.6e-63
UNIPROTKB|Q4KER0	283	PFL_2166 "3-hydroxybutyryl-CoA	0.892	0.936	0.460	3.6e-57
ASPGD|ASPL0000065284	319	hadA [Emericella nidulans (tax	0.855	0.796	0.486	4.2e-56
UNIPROTKB|G4N0T7	319	MGG_16630 "3-hydroxybutyryl-Co	0.851	0.793	0.492	4.8e-55
UNIPROTKB|F1N338	314	HADH "Uncharacterized protein"	0.888	0.840	0.421	3e-46

TAIR|locus:2087120 AT3G15290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 218/274 (79%), Positives = 241/274 (87%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
             IAQL    GLDVWL+D D DAL RAT +ISSS+++FVSKG +S+ VG DA  RLR TSNL
Sbjct:    19 IAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEVGDDAMHRLRLTSNL 78

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             +DL SADIIVEAIVESED+KKKLF +LD I K+SAILASNTSSISITRLASAT RP QVI
Sbjct:    79 EDLCSADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSISITRLASATRRPSQVI 138

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHFMNPPP+MKLVE+IRGADTS+ETF ATK LAERFGKT VCSQDYAGF+VNRILMPMI
Sbjct:   139 GMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTVCSQDYAGFVVNRILMPMI 198

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCLS+MKVLH GLGDSKYA
Sbjct:   199 NEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCLSVMKVLHEGLGDSKYA 258

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP 293
             PCPLLVQYVDAGRLG+KRG+GV+DYR   + + P
Sbjct:   259 PCPLLVQYVDAGRLGRKRGVGVYDYREATQKLSP 292

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TIGR_CMR|BA_5588 BA_5588 "3-hydroxyacyl-CoA dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 140/265 (52%), Positives = 179/265 (67%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
             IAQ+  M G DV + D   + L R     + ++ + V KG++ +        RL  T +L
Sbjct:    18 IAQVCAMAGYDVKVQDLKQEQLDRGLAITTKNLARQVEKGRMKEEEKEATLNRLTVTLDL 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
               +  AD+I+EA VE  D+KKK+F+ LD+I    AILA+NTSS+ IT +A+ T RP +VI
Sbjct:    78 DCVKEADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPITEIAAVTKRPEKVI 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHFMNP P+MKLVE+IRG  T D  +   + + ++ GK  V   D+ GF+ NRIL+PMI
Sbjct:   138 GMHFMNPVPVMKLVEIIRGLATDDAVYETIEDITKKIGKVPVEVNDFPGFVSNRILLPMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA +TLY GVATKE ID  MKLG N PMGPL LADFIGLD CL IM+VLH GLGDSKY 
Sbjct:   198 NEAIYTLYEGVATKEAIDEVMKLGMNHPMGPLTLADFIGLDTCLYIMEVLHEGLGDSKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             PCPLL +YV+AG LG+K G G + Y
Sbjct:   258 PCPLLRKYVNAGWLGRKTGRGFYVY 282

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|SPO_0717 SPO_0717 "3-hydroxybutyryl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 139/270 (51%), Positives = 177/270 (65%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
             IA +  + G DV L D    AL  A  ++  ++ +   +G++S+A    A  R+  T  L
Sbjct:    18 IAHVMALAGYDVLLTDISQQALDAALSTVRGNLARQAGRGKISEADMEAAMARISTTLAL 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
              DL   D+++EA  E E VK+ +F +L        IL SNTSSISITRLAS T RP + +
Sbjct:    78 ADLGQTDLVIEAATEREAVKQAIFEDLQPHLLPHTILTSNTSSISITRLASRTDRPERFM 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             G HFMNP P+M+LVE+IRG  T + TF A KA+ ++ GKT   ++D+  FIVNRILMPMI
Sbjct:   138 GFHFMNPVPVMQLVELIRGIATDEATFAACKAVVDKLGKTAASAEDFPAFIVNRILMPMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA +TLY GV     ID  MKLG N PMGPL+LADFIGLD CL+IM VLH GL D+KY 
Sbjct:   198 NEAVYTLYEGVGNVRSIDESMKLGANHPMGPLELADFIGLDTCLAIMNVLHDGLADTKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDYR-RVP 288
             PCPLL +YV+AG LG+K   G +DYR  VP
Sbjct:   258 PCPLLTKYVEAGWLGRKTQRGFYDYRGEVP 287

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0019605 "butyrate metabolic process" evidence=ISS

TIGR_CMR|CHY_1603 CHY_1603 "3-hydroxybutyryl-CoA dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 132/265 (49%), Positives = 181/265 (68%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
             IAQ+    G +  L D + D + +  ++I  S+ KFV KG++++A   +   R++ + +L
Sbjct:    18 IAQVAAQAGFETVLHDLNLDIVNKGLETIKKSLAKFVEKGKITEAEKNEILGRIKPSDSL 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             K+    D+++EA+VE  +VK K+F+ELD+I    AILA+NTSS+ IT +A+ T RP +VI
Sbjct:    78 KNAADCDLVIEAVVEKMEVKAKIFAELDQIAPPHAILATNTSSLPITEIAATTKRPERVI 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHFMNP PLMKLVE+IRG  TSDE ++  + L+ +  K  V  +D  GF+ NR+L  MI
Sbjct:   138 GMHFMNPVPLMKLVEIIRGLQTSDEVYQVIEELSRKMDKVPVECKDVPGFVSNRVLQVMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA + LY GVA+ E ID  MKLG N PMGPL LAD IGLD  L+I++VL+ G GD KY 
Sbjct:   198 NEAIWCLYEGVASVEGIDTIMKLGMNHPMGPLALADLIGLDTVLAILEVLYNGYGDPKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             PCPLL QYV AG LG+K G G ++Y
Sbjct:   258 PCPLLRQYVKAGWLGRKTGRGFYNY 282

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0019626 "short-chain fatty acid catabolic process" evidence=ISS

DICTYBASE|DDB_G0280465 DDB_G0280465 "3-hydroxyacyl-CoA dehydrogenase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 139/266 (52%), Positives = 178/266 (66%)

Query:    20 IAQ-LGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN 78
             IAQ L  +   +V LVD +   + ++  +I+  +QK V+KG +++       +R+  + +
Sbjct:    35 IAQVLAQVAKRNVILVDLNKAVVEKSLININGFLQKSVAKGVITEEDRQSTLKRISFSDD 94

Query:    79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
             L  L + D ++EAIVE+ ++K  LF +L KI K  AILASNTSSISIT++AS T+ P  V
Sbjct:    95 LNSLKNVDFVIEAIVENTEIKCNLFKDLSKICKPEAILASNTSSISITQIASNTNNPQNV 154

Query:   139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPM 198
             IGMHFMNP P+MKLVEVI    T+DET + T  LA    KT   S+D  GFI NR+LMP 
Sbjct:   155 IGMHFMNPVPIMKLVEVIPSLQTNDETLKTTMELAAEMNKTTTLSKDMPGFIANRLLMPY 214

Query:   199 INEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
             INEA   L+ G+ T+EDID  MKLG N PMGPL LADFIGLD C SIM +LHT LGD KY
Sbjct:   215 INEAVQALHEGLGTREDIDTTMKLGCNMPMGPLTLADFIGLDTCYSIMNILHTQLGD-KY 273

Query:   259 APCPLLVQYVDAGRLGKKRGIGVFDY 284
              P PLL +YV+AGRLGKK   G + Y
Sbjct:   274 KPSPLLKRYVEAGRLGKKVKHGFYTY 299

GO:0070403 "NAD+ binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|CHY_1292 CHY_1292 "3-hydroxybutyryl-CoA dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 130/265 (49%), Positives = 182/265 (68%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
             IAQ+    G  V+L D + + + +   +I+ ++++ V+KG+L+     +   R++   N+
Sbjct:    16 IAQVFAQAGFKVFLRDIEINLVEKGLTTINKNLERLVNKGKLTLEDKQEIIGRIKGIVNI 75

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             ++  + D++VE IVE+ +VKKK+F+ELD+I  A+ I A+NTSS+SIT LA+ T RP +VI
Sbjct:    76 EEAQNVDLVVEGIVENIEVKKKVFAELDEIFPANTIFATNTSSLSITDLAAVTKRPEKVI 135

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHF NP P+M+LVEVI+G  TS+ET++    L  + GKT V   +  GF+VNR+L+PMI
Sbjct:   136 GMHFFNPVPVMQLVEVIKGVATSEETYQTICDLVRQLGKTPVTVNEAPGFVVNRLLIPMI 195

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA + L  GVAT EDID  M+LG N PMGPL LAD IGLDVCL+IM+ LH   GD KY 
Sbjct:   196 NEAAYLLMEGVATAEDIDTAMRLGANHPMGPLALADLIGLDVCLAIMETLHKEFGDDKYR 255

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             PCPLL + V AG LG+K   G + Y
Sbjct:   256 PCPLLRKMVRAGHLGRKTQRGFYQY 280

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0019626 "short-chain fatty acid catabolic process" evidence=ISS

UNIPROTKB|Q4KER0 PFL_2166 "3-hydroxybutyryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 122/265 (46%), Positives = 169/265 (63%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
             IAQ+    G DV L+D    AL +A  +I  ++ + VSKG L +     A  R+R +++ 
Sbjct:    18 IAQVCAQAGFDVTLLDIAQGALEKALATIGKNLDRQVSKGTLGEDDKLAALGRIRISTDY 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
               L  A +++EA  E+ D+K K+  ++     A  ++ASNTSS+SIT+LA++ S P + I
Sbjct:    78 GVLKDAQLVIEAATENLDLKLKVLQQIAAQVSAECVIASNTSSLSITQLAASVSAPERFI 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             G+HF NP P+M L+EVIRG  TSD T      +A+R GKT + + +  GF+VNRIL+PMI
Sbjct:   138 GLHFFNPVPVMGLIEVIRGLQTSDATHALAMDMAQRLGKTAITAGNRPGFVVNRILVPMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA      G+A+ EDIDAGM+LG NQP+GPL LAD IGLD  L+I++  + G  DSKY 
Sbjct:   198 NEAILVFQEGLASAEDIDAGMRLGCNQPIGPLALADLIGLDTLLAILEAFYDGFNDSKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             P PLL + V AG LG+K G G   Y
Sbjct:   258 PAPLLKEMVAAGYLGRKTGRGFHHY 282

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

ASPGD|ASPL0000065284 hadA [Emericella nidulans (taxid:162425)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 127/261 (48%), Positives = 162/261 (62%)

Query:    31 VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVE 90
             V LVD    +L +  K     ++K VSK ++++     A  R+  + +L DL S D ++E
Sbjct:    59 VTLVDNSQASLDKGLKFADKLLEKDVSKDRITKEAADAARGRITSSLSLDDLSSVDFVIE 118

Query:    91 AIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR-------PCQVIGMHF 143
             A+ E  D+K  +FS+L +I     ILA+NTSSISIT++A+AT+        P +VI  HF
Sbjct:   119 AVPEIPDLKTSIFSKLAQIAPEHVILATNTSSISITKIAAATTTDPTNLQAPSRVISTHF 178

Query:   144 MNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAF 203
             MNP P+ K VE+I G  TS ET     A  +R GK    S D  GF+ NRILMP INEA 
Sbjct:   179 MNPVPVQKGVEIIAGLQTSKETIDTAIAFVQRMGKIASVSADSPGFLANRILMPYINEAI 238

Query:   204 FTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL 263
               L TG+ ++EDID+ MK GTN PMGPL LADFIGLD CL+IM VLH   GDSKY P  L
Sbjct:   239 ICLETGIGSREDIDSIMKNGTNVPMGPLTLADFIGLDTCLAIMNVLHQESGDSKYRPSGL 298

Query:   264 LVQYVDAGRLGKKRGIGVFDY 284
             L   V+AG LGKK G G +DY
Sbjct:   299 LKNMVNAGWLGKKSGKGFYDY 319

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=ISA

GO:0005739 "mitochondrion" evidence=ISA

GO:0070403 "NAD+ binding" evidence=IEA

UNIPROTKB|G4N0T7 MGG_16630 "3-hydroxybutyryl-CoA dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 129/262 (49%), Positives = 162/262 (61%)

Query:    31 VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPR-RLRCTSNLKDLHSADIIV 89
             V LVD    AL +        + K + K ++SQ    DA R RL  T+++  L   D ++
Sbjct:    59 VTLVDPSQGALDKGLSLADKLLSKDLQKSRISQE-DADATRGRLSPTTSMDSLADVDFVI 117

Query:    90 EAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPC-------QVIGMH 142
             EA+ E  ++K ++FS+L +I    AILA+NTSSISITR+A+AT++         +V+  H
Sbjct:   118 EAVPEIPNLKYEIFSKLAQICPKHAILATNTSSISITRIAAATTKDATDLSASSRVVSTH 177

Query:   143 FMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEA 202
             FMNP P+MK VE+I G  TS ET     A  +  GK    S D  GF+ NRILMP INEA
Sbjct:   178 FMNPVPVMKGVEIISGLQTSQETLDTAVAFCKAMGKVPSTSADSPGFLANRILMPYINEA 237

Query:   203 FFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP 262
                L T V  ++ ID  MK GTN PMGPLQLADFIGLD CL+IMKVLHT  GDSKY P  
Sbjct:   238 VICLETKVGDRDSIDTIMKTGTNVPMGPLQLADFIGLDTCLAIMKVLHTETGDSKYRPSV 297

Query:   263 LLVQYVDAGRLGKKRGIGVFDY 284
             LL + VDAG LGKK G G +DY
Sbjct:   298 LLQKMVDAGWLGKKSGKGFYDY 319

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1N338 HADH "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 116/275 (42%), Positives = 152/275 (55%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
             IAQ+    G  V LVD   D L ++ K I  S++K   K       G D    + L   S
Sbjct:    42 IAQVAAATGHTVVLVDQTEDILEKSRKGIEESLRKVAKKKFAENPKGADEFVAKTLSSIS 101

Query:    78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
                D    +HS D++VEAIVE+  +K +LF  LDK      I ASNTSS+ IT LA++T+
Sbjct:   102 TSTDAASVVHSTDLVVEAIVENLQMKNELFKRLDKFAAEHTIFASNTSSLQITSLANSTT 161

Query:   134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
             R  +  G+HF NP PLMKLVEVI+   TS +TF +    +   GK  V  +D  GFIVNR
Sbjct:   162 RQDRFAGLHFFNPVPLMKLVEVIKTPMTSQKTFESLLDFSRALGKHPVACKDTPGFIVNR 221

Query:   194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
             +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct:   222 LLVPYLMEAVRLCERGEASKEDIDMAMKLGAGYPMGPFELLDYVGLDTTKFILDGWHEM- 280

Query:   254 GDSK---YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
              DSK   + PCP L + V   + GKK G G + Y+
Sbjct:   281 -DSKNPLFQPCPSLNKLVAEKKFGKKSGEGFYKYK 314

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O53753	FADB2_MYCTU	1, ., 1, ., 1, ., 1, 5, 7	0.3972	0.9528	0.9895	yes	no
Q9RVG1	HBD_DEIRA	1, ., 1, ., 1, ., 1, 5, 7	0.5444	0.9158	0.9784	yes	no
P52041	HBD_CLOAB	1, ., 1, ., 1, ., 1, 5, 7	0.5177	0.9494	1.0	yes	no
P45364	HBD_CLODI	1, ., 1, ., 1, ., 1, 5, 7	0.4802	0.9393	0.9928	yes	no
P41938	HCDH2_CAEEL	1, ., 1, ., 1, ., 3, 5	0.3806	0.9494	0.9126	yes	no
Q45223	HBD_BRAJA	1, ., 1, ., 1, ., 1, 5, 7	0.5473	0.9595	0.9726	yes	no
Q61425	HCDH_MOUSE	1, ., 1, ., 1, ., 3, 5	0.4062	0.9461	0.8949	yes	no
P45856	HBD_BACSU	1, ., 1, ., 1, ., 1, 5, 7	0.5229	0.9528	0.9860	yes	no
Q16836	HCDH_HUMAN	1, ., 1, ., 1, ., 3, 5	0.4040	0.9158	0.8662	yes	no
P00348	HCDH_PIG	1, ., 1, ., 1, ., 3, 5	0.4103	0.9393	0.8885	yes	no
Q9WVK7	HCDH_RAT	1, ., 1, ., 1, ., 3, 5	0.4027	0.9461	0.8949	yes	no
P77851	HBD_THETC	1, ., 1, ., 1, ., 1, 5, 7	0.5124	0.9461	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
4th Layer	1.1.1.157	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	0.0
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	1e-141
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	1e-139
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	1e-123
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	1e-102
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	1e-95
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	7e-93
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	2e-76
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	8e-73
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	8e-72
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	1e-62
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	4e-57
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	9e-53
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	7e-52
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	7e-47
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	5e-45
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	1e-43
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	4e-43
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	3e-39
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	2e-34
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	4e-24
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	4e-21
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	1e-19
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	4e-18
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-04
PRK09496	453	PRK09496, trkA, potassium transporter peripheral m	0.001

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  531 bits (1369), Expect = 0.0
 Identities = 217/292 (74%), Positives = 240/292 (82%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           +K +GVVG+GQMGSGIAQL    G+DVWL+D+DP AL R   SISSS+ + V KG++SQ 
Sbjct: 4   IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63

Query: 65  VGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
                  R+RCT+NL++L  AD I+EAIVESED+KKKLFSELD+I K SAILASNTSSIS
Sbjct: 64  EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           ITRLASAT RP QVIGMHFMNPPP+MKLVE+IRGADTSDE F ATKALAERFGKTVVCSQ
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           DY GFIVNRILMPMINEAF+ LYTGVA+KEDID GMKLGTN PMGPL LADFIGLD CLS
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLS 243

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNAR 296
           IMKVLH GLGDSKY PCPLLVQYVDAGRLG+K G GV+ Y        P   
Sbjct: 244 IMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDPPRLS 295

Length = 295

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  398 bits (1026), Expect = e-141
 Identities = 156/280 (55%), Positives = 206/280 (73%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           ++ +GV+G+G MG+GIAQ+  + G DV +VD    A+ R   +I+ S+ + V KG++++A
Sbjct: 3   IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62

Query: 65  VGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
               A  R+  T++L DL  AD+++EA  E+ D+KKK+F++LD+I K  AILA+NTSS+S
Sbjct: 63  DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           IT LA+AT RP +VIGMHF NP P+MKLVE+IRG  TSD T  A +ALA++ GKT V  +
Sbjct: 123 ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK 182

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           +  GF+VNRIL+PMINEA F L  GVAT EDID GMKLG N P+GPL LAD IGLD CL+
Sbjct: 183 NAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           IM+VL+ G GDSKY PCPLL + V AG LG+K G G +DY
Sbjct: 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282

Length = 282

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  393 bits (1013), Expect = e-139
 Identities = 155/280 (55%), Positives = 202/280 (72%)

Query: 6   KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV 65
           K +GV+G+GQMG+GIA +  + G DV L D   D L     +I+ ++ + V+KG++S+  
Sbjct: 5   KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEA 64

Query: 66  GTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
              A  R+   ++L+DL   D+++EA  E E VK+K+F++L  + K  AILA+NTSSISI
Sbjct: 65  RAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI 124

Query: 126 TRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185
           TRLASAT RP + IG+HFMNP P+MKLVE+IRG  T + TF A K    + GKT+  ++D
Sbjct: 125 TRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAED 184

Query: 186 YAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSI 245
           +  FIVNRIL+PMINEA +TLY GV + E ID  MKLG N PMGPL+LADFIGLD CLSI
Sbjct: 185 FPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCLSI 244

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           M+VLH GL DSKY PCPLLV+YV+AG LG+K G G +DYR
Sbjct: 245 MQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYR 284

Length = 292

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  355 bits (913), Expect = e-123
 Identities = 147/292 (50%), Positives = 193/292 (66%), Gaps = 1/292 (0%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K + V+G+G MG+GIA +  + G DV L D  P+AL RA   I  +++K V KG+L++
Sbjct: 2   EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTE 61

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                A  R+  T++L  L  AD+++EA+VE  ++KK++F+EL+ + K  AILASNTSS+
Sbjct: 62  EEADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL 121

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SIT LA A  RP + IG+HF NP PLM LVEVIRG  TSDET       A++ GKT V  
Sbjct: 122 SITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVV 181

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           +D  GFIVNR+L  ++NEA   L  GVAT E+IDA M+ G   PMGP +LAD IGLDV L
Sbjct: 182 KDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241

Query: 244 SIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPN 294
            IMKVL+  LG D  Y P PLL + V+AGRLG+K G G +DYR       PN
Sbjct: 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGEAIKPLPN 293

Length = 307

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  299 bits (769), Expect = e-102
 Identities = 122/286 (42%), Positives = 183/286 (63%), Gaps = 2/286 (0%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
           M + ++ +GVVG+GQMG+GIA++    G+DV + +T  +        I  S+++ VS+G+
Sbjct: 1   MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGK 60

Query: 61  LSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASN 119
           L++     A  RLR T++L D     +++EA+VE E VK ++F+ELDK+ T   A+LASN
Sbjct: 61  LTERERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASN 120

Query: 120 TSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALA-ERFGK 178
           TSSI I +LA+AT RP +V+G+HF NP P++ LVE++    TS+ T    +  A +  GK
Sbjct: 121 TSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGK 180

Query: 179 TVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238
            VV +QD +GF+VN +L+P +  A   + +G AT EDID  M LG   PMGPL+L+D +G
Sbjct: 181 QVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG 240

Query: 239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           LD   +I   ++    +  YAP PLL++ V+AG LGKK G G + Y
Sbjct: 241 LDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286

Length = 286

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  283 bits (726), Expect = 1e-95
 Identities = 128/281 (45%), Positives = 181/281 (64%), Gaps = 2/281 (0%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           ++ + VVG+G MG GIA +  + G    LVD   + L  A + I+S  ++ V++G+L++A
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 65  VGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
               A  RL  + +LK  +  AD+++EA+ E  ++KK +F   D    A   +A+NTS++
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           S T +AS T RP +VI MHF NP   MKLVE+IRG +TSDET +  K +AE+ GK  V  
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            ++ GF+ +RI   + NEAF+ L  GVAT EDID  ++LG N PMGPL+L D +GLD  L
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           + +K LH  LG+ KY P PLL +YV AGRLG+K G GV+DY
Sbjct: 241 NNLKYLHETLGE-KYRPAPLLEKYVKAGRLGRKTGRGVYDY 280

Length = 288

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  283 bits (727), Expect = 7e-93
 Identities = 120/296 (40%), Positives = 161/296 (54%), Gaps = 1/296 (0%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
               +  + V+G+G MG+GIAQ+    G  V L D    A   A   I++ + K V KG+
Sbjct: 3   ALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGK 62

Query: 61  LSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
           L+      A  RLR    L DL   D++VEAIVE  DVK+ LF++L+ I     ILA+NT
Sbjct: 63  LTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNT 122

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           SS+SIT +A+A   P +V G+HF NP PLMKLVEV+ G  T      A  ALA  +GKT 
Sbjct: 123 SSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240
           V ++D  GFIVNR   P   EA   L  GVA    IDA ++      MGP +L D IGLD
Sbjct: 183 VRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLD 242

Query: 241 VCLSIMK-VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNA 295
           V  ++M+ V      + ++ P  +  + V AGRLG+K G G + Y    +     A
Sbjct: 243 VNHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEA 298

Length = 507

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  230 bits (589), Expect = 2e-76
 Identities = 86/177 (48%), Positives = 119/177 (67%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD 68
            V+G+G MG+GIAQ+    GL+V LVD   +AL +A   I  S+ + V KG++++     
Sbjct: 3   AVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDADA 62

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
              R+  T++L D   AD+++EA+ E+ D+K++LF+ELD I    AILASNTSS+SIT L
Sbjct: 63  VLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITEL 122

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185
           A+AT RP + IG+HF NPPPLM LVEV+RG  TS ET     ALA++ GKT V  +D
Sbjct: 123 AAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKD 179

This family also includes lambda crystallin. Length = 180

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  232 bits (592), Expect = 8e-73
 Identities = 115/285 (40%), Positives = 165/285 (57%), Gaps = 1/285 (0%)

Query: 10  VVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDA 69
           V+G+G MG+GIAQ+    G  V L D   +AL RA   I + +   V+KG+L+       
Sbjct: 10  VIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERT 69

Query: 70  PRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLA 129
            +RL   ++L  L  A +++EAIVE+ +VKK LF++L+++  A  I+ASNTSS+SIT +A
Sbjct: 70  LKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIA 129

Query: 130 SATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF 189
           +  +RP +V G+HF NP P+M LVEV+ G  T+ E        A  +GK  V      GF
Sbjct: 130 AGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF 189

Query: 190 IVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK-V 248
           IVNR+  P   EA   L   VA    +DA ++ G   PMGP +L D IG DV  ++   V
Sbjct: 190 IVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFAVTCSV 249

Query: 249 LHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP 293
            +    D ++ P  +  + V AGRLG+K G+GV+DYR   E+V P
Sbjct: 250 FNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVP 294

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  222 bits (568), Expect = 8e-72
 Identities = 116/291 (39%), Positives = 165/291 (56%), Gaps = 10/291 (3%)

Query: 3   EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSS---IQKFVSKG 59
             +KV+GVVGSG MG GIAQ+    G DV +VD   + L  A + I S    ++  V KG
Sbjct: 1   MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKG 60

Query: 60  QLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119
           ++S+        R+R +++ + L  AD IVEA+ E  D+K+K+F+EL++      I+ASN
Sbjct: 61  KMSEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASN 120

Query: 120 TSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT 179
           TS I I  +A+A  R  + IGMH+ NP P+MKL+EV+R A TS+ETF  T  L+++ GK 
Sbjct: 121 TSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKI 180

Query: 180 VVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGL 239
            +   D  GF   R +   + EA  +   G+AT +DID   KL    PMGP +L D IG+
Sbjct: 181 PIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGI 240

Query: 240 DVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKK------RGIGVFDY 284
           D    I + L+   GD ++ P   L Q V  G +G K      +G G FDY
Sbjct: 241 DTVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKG-GWFDY 290

Length = 291

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  199 bits (509), Expect = 1e-62
 Identities = 106/288 (36%), Positives = 157/288 (54%), Gaps = 17/288 (5%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           ++ + ++G+G MGSGIA L    GL V L+D    AL RA   I  ++  +   G  S  
Sbjct: 4   IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAG 63

Query: 65  VGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           +G     R+R  + L   +  AD+++EA+ E  ++K+ +F+ LD +     I A+NTS +
Sbjct: 64  MG-----RIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL 118

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT-VVC 182
            IT +A A +RP + +G HF  P  ++ LVEV+RG  TS +T   T AL    GK  V+ 
Sbjct: 119 PITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLV 178

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDA------GMKLGTNQPMGPLQLADF 236
            +D  GFI NRI   +  EA   L  GVA+ EDID       G++L      GPL+  D 
Sbjct: 179 KKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLAL---TGPLEQRDM 235

Query: 237 IGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
            GLDV L++   L+  L +++  P PLL + V+AG LG K G G + +
Sbjct: 236 NGLDVHLAVASYLYQDL-ENRTTPSPLLEEKVEAGELGAKSGQGFYAW 282

Length = 311

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  194 bits (496), Expect = 4e-57
 Identities = 112/310 (36%), Positives = 166/310 (53%), Gaps = 20/310 (6%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS 62
            +  +GV+G G MG GIA +     GL V + D +P  +  A K     + K V +  L 
Sbjct: 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLK 367

Query: 63  QAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
            +        +  T++ +    AD+++EA+ E   +K+++ +E+++      I ASNTSS
Sbjct: 368 PSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS 427

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVC 182
           + I ++A+A +RP QVIG+H+ +P   M LVEVI  A TS ET   T ALA++ GKT + 
Sbjct: 428 LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIV 487

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDV 241
            +D AGF VNRIL P INEA   L  G    E IDA + K G   P+GP+ L D +G+DV
Sbjct: 488 VRDGAGFYVNRILAPYINEAARLLLEGEPI-EHIDAALVKFGF--PVGPITLLDEVGIDV 544

Query: 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY--------RRVPESV-- 291
              I+ +L   LG+   AP     + ++  R G+K G G + Y        ++V ESV  
Sbjct: 545 GTKIIPILEAALGERFSAP-AAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYP 603

Query: 292 ----KPNARL 297
                P +RL
Sbjct: 604 LLGITPQSRL 613

Length = 708

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  183 bits (466), Expect = 9e-53
 Identities = 101/278 (36%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD 68
            V+G+G MG GIA      G+ V + D +  AL       +  + K V +G++  A    
Sbjct: 317 AVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAG 376

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
               +R T +       D++VEA+VE+  VK  + +E+++  +   ILASNTS+ISI+ L
Sbjct: 377 VLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLL 436

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           A A  RP    GMHF NP   M LVEVIRG  TSDET     A A + GKT +   D  G
Sbjct: 437 AKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG 496

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKV 248
           F VNR+L P     F  L    A    ID  M+     PMGP  L D +G+D       V
Sbjct: 497 FFVNRVLFPYFA-GFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555

Query: 249 LHTGLGD--SKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +  G  D   K     + V + +A R G+K G G + Y
Sbjct: 556 MAEGFPDRMKKDYRDAIDVLF-EAKRFGQKNGKGFYRY 592

Length = 715

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  171 bits (436), Expect = 7e-52
 Identities = 84/285 (29%), Positives = 141/285 (49%), Gaps = 4/285 (1%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ- 63
           +K + V G+G +GS IA      G DV + D   +AL +A + I+    ++V   + ++ 
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 64  AVGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
           A    A  R+  T++L + +  AD+++EA+ E  ++K   + EL K+     I A+N+S+
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGK-TVV 181
           +  ++ A AT RP + + +HF N        E++    T  E F    A A+  G   +V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 182 CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV 241
             ++  G+I+N +L+P ++ A      GVA  E ID    + T  PMGP  + D +GLD 
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDT 242

Query: 242 CLSIMKVLHTGLGDSKYAPCP-LLVQYVDAGRLGKKRGIGVFDYR 285
             +I         D        LL +Y+D G+LG   G G ++Y 
Sbjct: 243 AYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287

Length = 287

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  166 bits (422), Expect = 7e-47
 Identities = 102/283 (36%), Positives = 155/283 (54%), Gaps = 6/283 (2%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS 62
           K+K +G++G G MG GIA +     G+ V + D +P  +  A K     + K V +  ++
Sbjct: 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMT 362

Query: 63  QAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
            A   +    +  T++ +     DI++EA+ E   +K ++  ++++   A  I ASNTSS
Sbjct: 363 PAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS 422

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVC 182
           + I ++A+A SRP  VIG+H+ +P   M LVEVI  A TS++T   T ALA++ GKT + 
Sbjct: 423 LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIV 482

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDV 241
             D AGF VNRIL P +NEA   L  G    E ID  + K G   P+GP+ L D +G+DV
Sbjct: 483 VADKAGFYVNRILAPYMNEAARLLLEGEPV-EHIDKALVKFGF--PVGPITLLDEVGIDV 539

Query: 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
              I  +L   LG+   AP  +  + +   R G+K G G + Y
Sbjct: 540 GAKISPILEAELGERFKAP-AVFDKLLSDDRKGRKNGKGFYLY 581

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  161 bits (410), Expect = 5e-45
 Identities = 94/284 (33%), Positives = 148/284 (52%), Gaps = 3/284 (1%)

Query: 2   EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL 61
           +  +K + V+G+G MG+GIAQ+ V  GL   L D  P  L R  + +   + K V + ++
Sbjct: 332 QRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKI 391

Query: 62  SQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121
           +          L  T +     +AD+++EA+ E   +K K+  E++ +     I+ASNTS
Sbjct: 392 TSLERDSILSNLTPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS 451

Query: 122 SISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV 181
           ++ I  +A+ +SRP +VIGMH+ +P   M+L+E+I    TS +T  +  A+  + GK V+
Sbjct: 452 ALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVI 511

Query: 182 CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV 241
             +D  GF   R L PM+ E    L  GV  K+      K G   P+G   LAD +G+DV
Sbjct: 512 VVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGF--PVGAATLADEVGVDV 569

Query: 242 CLSIMKVLHTGLGDSKYAPCP-LLVQYVDAGRLGKKRGIGVFDY 284
              + + L    G+        LL + V AG LG+K G G+F Y
Sbjct: 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIY 613

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score =  143 bits (364), Expect = 1e-43
 Identities = 52/97 (53%), Positives = 67/97 (69%)

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GF+VNR+L P++NEA   +  GVAT EDIDA M+LG   PMGP +L+D +GLDV   I++
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 248 VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           VL    GD  Y P PLL + V+AGRLG+K G G + Y
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  156 bits (395), Expect = 4e-43
 Identities = 100/286 (34%), Positives = 140/286 (48%), Gaps = 8/286 (2%)

Query: 3   EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS 62
           + +K   V+G+G MG GIA      G  + + D +  +L       +  + K V +G+++
Sbjct: 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRIT 370

Query: 63  QAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
            A        +  T +     + DI+VEA+VE+  VK  + +E+++  +  AILASNTS+
Sbjct: 371 PAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST 430

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVC 182
           ISI+ LA A  RP    GMHF NP   M LVEVIRG  +SDET     A A + GKT + 
Sbjct: 431 ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIV 490

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC 242
             D  GF VNR+L P     F  L    A    ID  M+     PMGP  L D +G+D  
Sbjct: 491 VNDCPGFFVNRVLFPYFG-GFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTG 549

Query: 243 LSIMKVLHTG----LGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
                V+  G    +G         L    +A RLG+K G G + Y
Sbjct: 550 HHAQAVMAEGFPDRMGKDGRDAIDAL---FEAKRLGQKNGKGFYAY 592

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  139 bits (352), Expect = 3e-39
 Identities = 92/286 (32%), Positives = 134/286 (46%), Gaps = 15/286 (5%)

Query: 16  MGSGIAQLGVMDGLDVWLVDTDP------DALVRATKS-ISSSIQKFVSKGQLSQAVGTD 68
           MG GIA      G DV L+D  P       AL    ++ I  ++   V+ G++  A    
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 69  APRRLRCT--SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
              R+         D L  AD++ EA+ E  D K++    L +   A AI+AS TS+  +
Sbjct: 61  VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120

Query: 126 TRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT-VVCSQ 184
           T L    + P + +  H++NP  LM LVEV     T         AL ER GK  VVC  
Sbjct: 121 TDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGP 180

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI---GLDV 241
              G+IV RI    +NEA   +  GVA+ EDID  ++ G       L L +FI   G D+
Sbjct: 181 S-PGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDI 239

Query: 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287
                + L   +G  ++AP  ++V+ ++ GR G + G G +DY  V
Sbjct: 240 LYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV 285

Length = 314

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  126 bits (319), Expect = 2e-34
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           M  + ++G+G +G   A +    G +V L D DP A   A   I+  ++   +   L   
Sbjct: 2   MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGE 61

Query: 65  VGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                  R+R T +L D +  AD + E+  E+ ++K+ LF+ELD +    AILAS+TS++
Sbjct: 62  APDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSAL 121

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG-KTVVC 182
             +      +   + +  H +NPP L+ +VEV+    T+  T    +AL    G   V  
Sbjct: 122 LASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRL 181

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTN---QPMGPLQLAD 235
            ++  GF++NR+   ++ EAF  +  GVA+ +DIDA ++ G       MGP +  D
Sbjct: 182 RREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETID 237

Length = 308

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  101 bits (253), Expect = 4e-24
 Identities = 40/122 (32%), Positives = 59/122 (48%)

Query: 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV 210
           K   ++    TS     A  AL ++ GK V   +D  GF+  R +  ++NEA      G+
Sbjct: 379 KRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGI 438

Query: 211 ATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDA 270
           A+  DID  M+LG N P+GPL   D +G    L +++ L    GD +Y P P L +    
Sbjct: 439 ASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAAL 498

Query: 271 GR 272
           G 
Sbjct: 499 GL 500

Length = 507

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 91.1 bits (226), Expect = 4e-21
 Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
            +K    +GSG +GSG     +  GLDV   D  P A      +++++      +G    
Sbjct: 6   DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPG 65

Query: 64  AVGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
           A    +P RLR  + ++  +  AD I E+  E E +K +L   + +  K  AI+AS+TS 
Sbjct: 66  A----SPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSG 121

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG-KTVV 181
           +  T   +  + P + +  H  NP  L+ LVEV+ G  T+ E   A   +    G + + 
Sbjct: 122 LLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLH 181

Query: 182 CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLG 223
             ++  GFI +R+L  +  EA   +  GVAT  +ID  ++ G
Sbjct: 182 VRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFG 223

Length = 321

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 88.3 bits (219), Expect = 1e-19
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 14/219 (6%)

Query: 11  VGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAP 70
           +G G +G G A   ++ G+DV + D  P+A           I + ++  + + A+ TDAP
Sbjct: 10  IGGGVIGGGWAARFLLAGIDVAVFDPHPEA--------ERIIGEVLANAERAYAMLTDAP 61

Query: 71  R----RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
                RL   ++L + +  AD I E++ E  D+K+++ +E+D   +  A++ S+TS    
Sbjct: 62  LPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLP 121

Query: 126 TRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG-KTVVCSQ 184
           + L    + P ++   H  NP  L+ LVE++ G  TS ET R  K +    G K V  ++
Sbjct: 122 SDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAK 181

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLG 223
           +   F+ +R+L  +  EA + +  G+AT E+ID  ++  
Sbjct: 182 EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYS 220

Length = 495

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score = 83.8 bits (207), Expect = 4e-18
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query: 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV 210
           K + +   A   D   R      ++ GK V+   DY G ++ R +  + NEA   +  GV
Sbjct: 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGV 437

Query: 211 ATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQ 266
           A+ +DID  M+LG N P GPL  A  +G    L +++ L    G+ +Y P  LL +
Sbjct: 438 ASAQDIDTAMRLGVNYPYGPLAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRR 493

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I  R +M M+NEA   L  G+  +  D D G   G   P    GP +  D +G    ++I
Sbjct: 618 IAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAI 677

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
           ++ L    GD ++ PC  LV+  + G 
Sbjct: 678 LERLAAQYGD-RFTPCERLVEMAERGE 703

Length = 708

>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane component; Reviewed

 Score = 39.7 bits (94), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 5  MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45
          MK++ +VG+GQ+G  +A+    +  DV ++DTD + L R  
Sbjct: 1  MKII-IVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQ 40

Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.98
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.96
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.94
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.93
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.88
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.88
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.87
PRK07417	279	arogenate dehydrogenase; Reviewed	99.82
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.8
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.79
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.79
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.78
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.78
PLN02688	266	pyrroline-5-carboxylate reductase	99.77
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.76
PLN02858	1378	fructose-bisphosphate aldolase	99.75
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.75
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.72
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.72
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.71
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.71
PRK08507	275	prephenate dehydrogenase; Validated	99.7
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.7
PLN02858	1378	fructose-bisphosphate aldolase	99.7
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.7
PRK06545	359	prephenate dehydrogenase; Validated	99.7
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.69
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.69
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.68
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.68
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.67
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.66
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.66
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.65
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.65
PRK08655	437	prephenate dehydrogenase; Provisional	99.62
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.62
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.61
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.59
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.58
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.58
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.57
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.56
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.56
PLN02256	304	arogenate dehydrogenase	99.54
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.52
PRK07680	273	late competence protein ComER; Validated	99.52
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.52
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.52
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.51
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.5
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.49
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.48
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.47
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.45
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.45
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.45
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.44
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.42
PRK08818	370	prephenate dehydrogenase; Provisional	99.42
PLN02712	667	arogenate dehydrogenase	99.41
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.4
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.39
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.39
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.38
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.37
PLN02712	667	arogenate dehydrogenase	99.36
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.35
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.34
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.33
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.29
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.29
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.27
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.26
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.26
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.26
PTZ00117	319	malate dehydrogenase; Provisional	99.25
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.25
PRK06223	307	malate dehydrogenase; Reviewed	99.24
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.23
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.22
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	99.19
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.16
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.15
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.12
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.11
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	99.1
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	99.02
PRK12480	330	D-lactate dehydrogenase; Provisional	99.0
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.98
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.96
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.93
PRK06444	197	prephenate dehydrogenase; Provisional	98.88
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.87
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.85
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.83
PRK07574	385	formate dehydrogenase; Provisional	98.83
PLN03139	386	formate dehydrogenase; Provisional	98.83
PRK13243	333	glyoxylate reductase; Reviewed	98.82
PRK06436	303	glycerate dehydrogenase; Provisional	98.8
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.77
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.77
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.7
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.67
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.64
PRK08605	332	D-lactate dehydrogenase; Validated	98.63
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.62
PRK15076	431	alpha-galactosidase; Provisional	98.6
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.59
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.58
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.58
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.57
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.57
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.57
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.54
PLN02602	350	lactate dehydrogenase	98.53
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.53
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.48
PLN02928	347	oxidoreductase family protein	98.44
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.42
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.42
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.41
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.4
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.35
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.35
PRK05442	326	malate dehydrogenase; Provisional	98.35
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.33
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	98.33
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.3
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.29
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.25
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.24
PRK06932	314	glycerate dehydrogenase; Provisional	98.24
PRK06141	314	ornithine cyclodeaminase; Validated	98.24
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.23
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	98.23
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.23
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.21
PLN00112	444	malate dehydrogenase (NADP); Provisional	98.21
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.19
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.17
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.17
PRK06487	317	glycerate dehydrogenase; Provisional	98.16
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.16
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.14
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.12
PRK05225	487	ketol-acid reductoisomerase; Validated	98.12
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.12
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.1
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.1
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.1
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	98.09
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.09
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	98.09
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.07
PLN02306	386	hydroxypyruvate reductase	98.05
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.04
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	98.04
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	98.04
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.03
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	98.03
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.02
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.99
PRK04148	134	hypothetical protein; Provisional	97.97
PLN00106	323	malate dehydrogenase	97.97
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.95
KOG1495	332	consensus Lactate dehydrogenase [Energy production	97.93
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.92
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.9
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.89
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.87
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.86
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.86
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.85
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.8
PLN02494	477	adenosylhomocysteinase	97.79
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.77
COG2910	211	Putative NADH-flavin reductase [General function p	97.77
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.76
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	97.75
PTZ00325	321	malate dehydrogenase; Provisional	97.75
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.74
PRK08618	325	ornithine cyclodeaminase; Validated	97.74
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.73
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.71
PRK05086	312	malate dehydrogenase; Provisional	97.7
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.7
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.7
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.68
PRK07340	304	ornithine cyclodeaminase; Validated	97.68
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.67
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.66
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.66
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.64
PRK08291	330	ectoine utilization protein EutC; Validated	97.62
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.62
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.61
PRK06407	301	ornithine cyclodeaminase; Provisional	97.61
PLN00203	519	glutamyl-tRNA reductase	97.61
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	97.58
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.58
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.57
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.56
PRK06823	315	ornithine cyclodeaminase; Validated	97.55
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	97.55
PRK10669	558	putative cation:proton antiport protein; Provision	97.54
PRK06046	326	alanine dehydrogenase; Validated	97.54
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.54
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.53
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.53
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.5
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.5
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.47
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.46
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.46
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.44
PRK09496	453	trkA potassium transporter peripheral membrane com	97.43
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.43
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	97.42
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.4
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.39
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.35
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.35
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.34
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.29
PRK07589	346	ornithine cyclodeaminase; Validated	97.27
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.26
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.25
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.24
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.19
PRK09496	453	trkA potassium transporter peripheral membrane com	97.19
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.18
PRK06199	379	ornithine cyclodeaminase; Validated	97.18
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.16
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.12
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.11
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.1
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.1
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.09
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.07
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.03
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.02
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.01
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.99
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.99
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.96
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.96
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.96
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.93
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.92
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	96.9
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.89
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.88
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.86
COG5495	289	Uncharacterized conserved protein [Function unknow	96.85
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.84
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.84
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.83
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.83
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.8
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.79
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	96.78
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.78
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.76
PRK08163	396	salicylate hydroxylase; Provisional	96.76
PLN00016	378	RNA-binding protein; Provisional	96.73
PRK06153	393	hypothetical protein; Provisional	96.71
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.71
CHL00194	317	ycf39 Ycf39; Provisional	96.69
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.68
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.68
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.67
PRK07045	388	putative monooxygenase; Reviewed	96.65
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.64
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.63
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	96.6
PRK06847	375	hypothetical protein; Provisional	96.6
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.6
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.58
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.58
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.58
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.56
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.56
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.56
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.56
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.55
PLN03209	576	translocon at the inner envelope of chloroplast su	96.54
PRK08223	287	hypothetical protein; Validated	96.54
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.54
PRK11579	346	putative oxidoreductase; Provisional	96.54
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.51
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	96.51
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.49
PRK05868	372	hypothetical protein; Validated	96.48
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.47
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.45
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.44
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.43
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.43
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.42
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.41
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.41
PRK07236	386	hypothetical protein; Provisional	96.38
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.38
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	96.36
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.34
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.33
PRK06753	373	hypothetical protein; Provisional	96.32
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.31
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.3
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.27
PRK07326	237	short chain dehydrogenase; Provisional	96.25
PRK06185	407	hypothetical protein; Provisional	96.25
PRK12939	250	short chain dehydrogenase; Provisional	96.24
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.22
PRK06126	545	hypothetical protein; Provisional	96.22
PRK07877	722	hypothetical protein; Provisional	96.2
PRK14982	340	acyl-ACP reductase; Provisional	96.2
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.2
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	96.19
COG2344	211	AT-rich DNA-binding protein [General function pred	96.17
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.17
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.17
PRK07411	390	hypothetical protein; Validated	96.14
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.12
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	96.11
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.1
PRK07588	391	hypothetical protein; Provisional	96.1
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.08
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	96.08
PRK06349	426	homoserine dehydrogenase; Provisional	96.07
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.07
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.05
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.04
PRK07538	413	hypothetical protein; Provisional	96.04
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.03
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	96.03
PRK10637	457	cysG siroheme synthase; Provisional	96.03
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	96.03
PRK08013	400	oxidoreductase; Provisional	96.02
PRK07454	241	short chain dehydrogenase; Provisional	96.01
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.01
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.01
PLN03075	296	nicotianamine synthase; Provisional	95.98
PRK06475	400	salicylate hydroxylase; Provisional	95.97
PRK06139	330	short chain dehydrogenase; Provisional	95.97
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.97
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.97
PRK09414	445	glutamate dehydrogenase; Provisional	95.96
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.96
PRK07478	254	short chain dehydrogenase; Provisional	95.95
PRK07190	487	hypothetical protein; Provisional	95.94
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.94
PRK10157	428	putative oxidoreductase FixC; Provisional	95.92
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.92
PRK09072	263	short chain dehydrogenase; Provisional	95.92
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.91
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.91
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.9
PRK06172	253	short chain dehydrogenase; Provisional	95.89
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.88
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.88
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.86
PRK12828	239	short chain dehydrogenase; Provisional	95.86
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.85
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	95.85
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.83
PRK08862	227	short chain dehydrogenase; Provisional	95.83
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.83
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.83
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.82
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.8
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.77
PRK07102	243	short chain dehydrogenase; Provisional	95.76
PRK07774	250	short chain dehydrogenase; Provisional	95.76
PRK07825	273	short chain dehydrogenase; Provisional	95.74
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.73
PRK07890	258	short chain dehydrogenase; Provisional	95.73
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.73
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	95.73
PRK05866	293	short chain dehydrogenase; Provisional	95.72
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.72
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.71
PRK07067	257	sorbitol dehydrogenase; Provisional	95.7
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	95.68
PRK09126	392	hypothetical protein; Provisional	95.68
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.67
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.67
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.65
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.64
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	95.64
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	95.64
PLN02985	514	squalene monooxygenase	95.63
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	95.63
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	95.62
PLN02780	320	ketoreductase/ oxidoreductase	95.62
PRK08703	239	short chain dehydrogenase; Provisional	95.6
PRK06138	252	short chain dehydrogenase; Provisional	95.6
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.59
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.59
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.59
PLN02383	344	aspartate semialdehyde dehydrogenase	95.58
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.58
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.58
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.58
PRK06180	277	short chain dehydrogenase; Provisional	95.58
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.56
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.54
PRK05993	277	short chain dehydrogenase; Provisional	95.54
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.53
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.53
PRK08267	260	short chain dehydrogenase; Provisional	95.53
PRK07576	264	short chain dehydrogenase; Provisional	95.53
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.53
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	95.53
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.53
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.52
PRK06270	341	homoserine dehydrogenase; Provisional	95.51
PRK07063	260	short chain dehydrogenase; Provisional	95.51
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.51
COG3349	485	Uncharacterized conserved protein [Function unknow	95.5
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.5
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.49
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.49
PRK07109	334	short chain dehydrogenase; Provisional	95.48
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.47
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.45
PRK14852	989	hypothetical protein; Provisional	95.44
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.44
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.43
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.43
PRK05867	253	short chain dehydrogenase; Provisional	95.42
PRK10538	248	malonic semialdehyde reductase; Provisional	95.42
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.41
PRK08278	273	short chain dehydrogenase; Provisional	95.41
PRK09186	256	flagellin modification protein A; Provisional	95.41
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	95.4
PRK14851	679	hypothetical protein; Provisional	95.38
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.37
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	95.37
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	95.35
PRK08264	238	short chain dehydrogenase; Validated	95.35
PRK08017	256	oxidoreductase; Provisional	95.34
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.34
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	95.33
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	95.33
PRK06194	287	hypothetical protein; Provisional	95.31
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.3
PRK06101	240	short chain dehydrogenase; Provisional	95.29
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	95.29
PRK07208	479	hypothetical protein; Provisional	95.27
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	95.26
PRK07831	262	short chain dehydrogenase; Provisional	95.25
PRK08339	263	short chain dehydrogenase; Provisional	95.23
PRK06184	502	hypothetical protein; Provisional	95.23
PRK08265	261	short chain dehydrogenase; Provisional	95.23
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.22
PRK07814	263	short chain dehydrogenase; Provisional	95.22
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.22
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.21
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	95.2
PRK05884	223	short chain dehydrogenase; Provisional	95.18
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.18
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.17
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	95.17
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.17
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	95.17
PRK10015	429	oxidoreductase; Provisional	95.17
PRK06720	169	hypothetical protein; Provisional	95.16
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.16
PRK06179	270	short chain dehydrogenase; Provisional	95.16
PRK07035	252	short chain dehydrogenase; Provisional	95.14
PRK06057	255	short chain dehydrogenase; Provisional	95.14
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.13

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=2.8e-72  Score=482.03  Aligned_cols=283  Identities=51%  Similarity=0.799  Sum_probs=275.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||++||..++.+||+|+++|++++.++++.+.+++.+++++++|.++.++.+..+++++.++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            47899999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+|||+++|+.++|+++|++++.++++++|++||||+++++++++.+.+|+|++|+||||||+++++|||+.+..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++.++++.+|+.|++++|.|||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|+|+.+
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC-CCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022434          244 SIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       244 ~~~~~~~~~~~-~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~  286 (297)
                      .+++.+++.++ ++.|.|++++++|++.|++|+|+|+|||+|++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            99999998888 45788999999999999999999999999985

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=9.3e-74  Score=456.23  Aligned_cols=283  Identities=52%  Similarity=0.848  Sum_probs=270.7

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhh-----cccCCCcEEec
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVG-----TDAPRRLRCTS   77 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~i~~~~   77 (297)
                      .++++|+|||+|.||++||+..+.+|++|+++|++++.++++.+.|.+.+.++.+++..+....     +..+++|+.++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            4578999999999999999999999999999999999999999999999999998887654433     56678999999


Q ss_pred             Cccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEe
Q 022434           78 NLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVI  156 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~  156 (297)
                      +.++ ++++|+|||++.|+.++|..+|++|+..+++++|++||||++.+++++..+++|.||.|+|||||++++.++|++
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi  168 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI  168 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence            9887 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHh
Q 022434          157 RGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADF  236 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~  236 (297)
                      .+..|+++++.....+.+.+|+.++.++|.||||+||++.++++||+++++.|.++.+|||.||++|.|+|+||||++|.
T Consensus       169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy  248 (298)
T KOG2304|consen  169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY  248 (298)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHhhcC-CCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022434          237 IGLDVCLSIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       237 ~Gl~~~~~~~~~~~~~~~-~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~  285 (297)
                      +|||++..+|+.|++.++ +..|.|+|+|.++|++|++|||+|.|||+|.
T Consensus       249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            999999999999999994 5689999999999999999999999999994

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.2e-69  Score=469.99  Aligned_cols=284  Identities=43%  Similarity=0.712  Sum_probs=276.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |++.+++|+|||+|.||.+||..|+.+||+|++||++++.++.+.+++++.+++++++|.++..+.+..+++++.+++++
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~   80 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG   80 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH
Confidence            77788899999999999999999999999999999999999999999999999999999999888888999999999998


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhc-CCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKIT-KASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGA  159 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~-~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~  159 (297)
                      ++++||+||||+||+.++|+++|+++++.+ ++++|++||||+++++.++..+.+|+|++|+|||+||++++++||+++.
T Consensus        81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~  160 (286)
T PRK07819         81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTL  160 (286)
T ss_pred             HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCC
Confidence            899999999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHH-HcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhc
Q 022434          160 DTSDETFRATKALAE-RFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG  238 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~-~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~G  238 (297)
                      .|++++++++.+++. .+|+.|++++|.|||++||++.+++|||++++++|++++++||.+++.|+|||+|||+++|.+|
T Consensus       161 ~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~G  240 (286)
T PRK07819        161 VTSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG  240 (286)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhc
Confidence            999999999999988 5999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022434          239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~  284 (297)
                      ++.+..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|
T Consensus       241 ld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        241 LDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             cHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            9999999999999999878999999999999999999999999998

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=7.6e-66  Score=476.70  Aligned_cols=287  Identities=39%  Similarity=0.633  Sum_probs=276.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||++||.+|+++||+|++||+++++++++.+++++.+++++++|.+++++.+..+++++.++++++++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||||+||+.++|+.+|++++..+++++||+||||+++++++++.+.+|.|++|+|||+|+++++++|++.+..|++
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~  163 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA  163 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++.++++.+|+.|+++++.|||+.||++.++++||+.++++|++++++||.+++.++|||+|||+++|++|+|+++
T Consensus       164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~  243 (503)
T TIGR02279       164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF  243 (503)
T ss_pred             HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCC
Q 022434          244 SIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPES  290 (297)
Q Consensus       244 ~~~~~~~~~~-~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~~  290 (297)
                      .+++.+++.+ ++++|.|++++++|+++|++|+|+|+|||+|++++..
T Consensus       244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~  291 (503)
T TIGR02279       244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEA  291 (503)
T ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCC
Confidence            9999998774 6778999999999999999999999999999865443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=9.1e-65  Score=487.50  Aligned_cols=287  Identities=34%  Similarity=0.539  Sum_probs=275.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ++++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.+++++++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  382 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF  382 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence            5689999999999999999998 589999999999999999999999999999999999999889999999999999889


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      ++||+|||++||+.++|+++|++|++.+++++|++||||+++++++++.+.+|+|++|+|||+||+.+++|||+.++.|+
T Consensus       383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~  462 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTS  462 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHH
Q 022434          163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC  242 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~  242 (297)
                      +++++.+..+++.+||.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++
T Consensus       463 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~-~~~dID~a~~-~~G~p~GPf~l~D~vGld~~  540 (699)
T TIGR02440       463 EQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGE-PVEHIDKALV-KFGFPVGPITLLDEVGIDVG  540 (699)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH-HcCCCcCHHHHHHHhchHHH
Confidence            999999999999999999999999999999999999999999999996 9999999997 89999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCCCCC
Q 022434          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP  293 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~~~~~  293 (297)
                      ..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+.+++...+
T Consensus       541 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~  590 (699)
T TIGR02440       541 AKISPILEAELGE-RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAV  590 (699)
T ss_pred             HHHHHHHHHhcCC-CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCC
Confidence            9999999999998 7999999999999999999999999999866554333

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.2e-64  Score=468.41  Aligned_cols=288  Identities=41%  Similarity=0.618  Sum_probs=276.7

Q ss_pred             CCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            2 EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         2 ~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++++++|+|||+|.||.+||.+|+.+||+|++||+++++++++.+++++.+++++++|.++.++.+..+++++.++++++
T Consensus         4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT  161 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~  161 (297)
                      +++||+||||++|+.++|+.+|++++..+++++|++||||++++++++..+.+|+|++|+|||+|+++++++|++.+..|
T Consensus        84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T  163 (507)
T PRK08268         84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT  163 (507)
T ss_pred             hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHH
Q 022434          162 SDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV  241 (297)
Q Consensus       162 ~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~  241 (297)
                      ++++++++.++++.+|+.|++++|.|||++||++.++++||+.++++|++++++||.+++.++|||+|||+++|.+|+|+
T Consensus       164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv  243 (507)
T PRK08268        164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV  243 (507)
T ss_pred             CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434          242 CLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       242 ~~~~~~~~~~~~-~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~  289 (297)
                      .+.+++.++..+ ++++|.|++++++|++.|++|+|+|+|||+|+++++
T Consensus       244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~  292 (507)
T PRK08268        244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAK  292 (507)
T ss_pred             HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCC
Confidence            999999888764 566899999999999999999999999999976544

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.4e-64  Score=486.22  Aligned_cols=282  Identities=35%  Similarity=0.502  Sum_probs=271.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.++++++++
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  391 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD  391 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+|||+++|+.++|+++|++|++.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~  471 (714)
T TIGR02437       392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSD  471 (714)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+||.|++++|.|||++||++.++++||+.++++| +++++||.+++.++|||+|||+++|.+|+|+++
T Consensus       472 ~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~  550 (714)
T TIGR02437       472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGH  550 (714)
T ss_pred             HHHHHHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999 799999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022434          244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       244 ~~~~~~~~~~~~~~-~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~  286 (297)
                      .+++.++..+++.. ..|++++.+|+++|++|+|+|+|||+|++
T Consensus       551 ~i~~~~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~  594 (714)
T TIGR02437       551 HAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEA  594 (714)
T ss_pred             HHHHHHHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEeccc
Confidence            99999998888732 24578999999999999999999999963

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.2e-64  Score=487.47  Aligned_cols=282  Identities=33%  Similarity=0.535  Sum_probs=272.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||++||..++.+|++|+++|++++.+++..+++++.+++++++|.+++++.+..+++|+.++++++++
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  413 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFK  413 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+|||+++|+.++|+++|++|++.+++++|++||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus       414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~  493 (737)
T TIGR02441       414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSK  493 (737)
T ss_pred             cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+..+++.+||.|++++|.|||++||++.++++||+.++++|+ ++++||.+++ ++|+|+|||+++|.+|+|+++
T Consensus       494 ~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv-~~~~ID~a~~-~~G~p~GP~~l~D~vGld~~~  571 (737)
T TIGR02441       494 DTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGV-DPKKLDKLTT-KFGFPVGAATLADEVGVDVAE  571 (737)
T ss_pred             HHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 9999999985 899999999999999999999


Q ss_pred             HHHHHHHhhcCCCCC--CCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022434          244 SIMKVLHTGLGDSKY--APCPLLVQYVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~--~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~  288 (297)
                      .+++.++..+++ +|  .|++++.+|+++|++|+|+|+|||+|++++
T Consensus       572 ~v~~~l~~~~~~-~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~  617 (737)
T TIGR02441       572 HVAEDLGKAFGE-RFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGK  617 (737)
T ss_pred             HHHHHHHHhcCc-ccccccCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence            999999999887 66  378999999999999999999999998654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.4e-64  Score=487.32  Aligned_cols=283  Identities=35%  Similarity=0.508  Sum_probs=272.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+++|++++++++++
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  391 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFE  391 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+|||++||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~  471 (715)
T PRK11730        392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSD  471 (715)
T ss_pred             CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+||.|++++|.|||++||++.++++||+.++++| +++++||.+++.++|||+|||+++|.+|+|++.
T Consensus       472 ~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~  550 (715)
T PRK11730        472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAH  550 (715)
T ss_pred             HHHHHHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhhCCCccCHHHHHHhhchHHHH
Confidence            9999999999999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434          244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       244 ~~~~~~~~~~~~~~-~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~  287 (297)
                      .+++.++..+++.. +.|++++.+|+++|++|+|+|+|||+|+++
T Consensus       551 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~  595 (715)
T PRK11730        551 HAQAVMAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEED  595 (715)
T ss_pred             HHHHHHHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccC
Confidence            99999998888742 345789999999999999999999999743

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.4e-63  Score=433.13  Aligned_cols=282  Identities=29%  Similarity=0.513  Sum_probs=266.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-hcccCCCcEEecCccc-
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV-GTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~-   81 (297)
                      ++++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+.+++.++.+.+.+.++.++ .+....+++.++++++ 
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            46799999999999999999999999999999999999999999999999888888877665 5666788999999876 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT  161 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~  161 (297)
                      +++||+||+|+|++.++|+.+++++.+.+++++||++|||+++++++++.+.+|.|++|+||++|++.++++|+++++.|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchH
Q 022434          162 SDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD  240 (297)
Q Consensus       162 ~~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~  240 (297)
                      ++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|++++++||.+++.++|+|+|||+++|.+|+|
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            9999999999999999999988 699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCC-CCcHHHHHHHHcCCCCcccCCcccccC
Q 022434          241 VCLSIMKVLHTGLGDSKY-APCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~-~p~~~l~~~~~~g~~G~~~g~Gfy~~~  285 (297)
                      .+..+++.+++.++++++ .|++++++|+++|++|+|+|+|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            999999999999998664 389999999999999999999999995

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=9.7e-64  Score=481.46  Aligned_cols=283  Identities=36%  Similarity=0.550  Sum_probs=273.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++++.+...++|+++++++++
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  387 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGF  387 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHh
Confidence            4789999999999999999999 889999999999999999999999999999999999998888999999999999889


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      ++||+|||++||+.++|+++|+++++++++++|++||||++++++|++.+.+|+|++|+|||+||+.+++|||++++.|+
T Consensus       388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts  467 (708)
T PRK11154        388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTS  467 (708)
T ss_pred             ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHH
Q 022434          163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC  242 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~  242 (297)
                      +++++.+..+++.+|+.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|.+
T Consensus       468 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv-~~~dID~a~~-~~G~p~GPf~~~D~~Gld~~  545 (708)
T PRK11154        468 AETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGE-PIEHIDAALV-KFGFPVGPITLLDEVGIDVG  545 (708)
T ss_pred             HHHHHHHHHHHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999996 9999999998 89999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~  289 (297)
                      ..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+++++
T Consensus       546 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~  591 (708)
T PRK11154        546 TKIIPILEAALGE-RFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGK  591 (708)
T ss_pred             HHHHHHHHHHcCC-CCCCCHHHHHHHHCCCCcccCCceEEECCCCcc
Confidence            9999999998886 799999999999999999999999999986443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=5.3e-63  Score=433.96  Aligned_cols=286  Identities=76%  Similarity=1.171  Sum_probs=273.4

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      +++++|+|||+|.||.+||..|+.+|++|++||+++++++...+++++.++++++.|.++.++.+...+++.++++.+.+
T Consensus         2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T PLN02545          2 AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL   81 (295)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999888777777888888888789


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      ++||+||+|++|+.++|+.+++++.+.++++++|+||||+++++++++.+.++.+++++||++||...+++|++.+..++
T Consensus        82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~  161 (295)
T PLN02545         82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTS  161 (295)
T ss_pred             CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHH
Q 022434          163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC  242 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~  242 (297)
                      +++++.+.++++.+|+.+++++|.|||++||++.++++||++++++|++++++||.+++.|+|||+|||+++|.+|++.+
T Consensus       162 ~e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~  241 (295)
T PLN02545        162 DEVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTC  241 (295)
T ss_pred             HHHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022434          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~  288 (297)
                      ..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus       242 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  287 (295)
T PLN02545        242 LSIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK  287 (295)
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence            9999999999988789999999999999999999999999997644

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.9e-63  Score=432.05  Aligned_cols=284  Identities=45%  Similarity=0.713  Sum_probs=269.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||.+||..|+++|++|++||+++++++.+.+++...++..++.|.++..+.+....+++.++++++ ++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            46899999999999999999999999999999999999998888888888888888887777777888998888865 89


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.++.++.+.+++++++++|||+++++++++.+.++.+++|+||++|++.++++|++.++.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      +++++++++++.+|++|++++|.|||++||++.++++||+.++++|++++++||.+++.|+|||+|||+++|.+|++.+.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~  289 (297)
                      ..++.++..+++ +|.|+++|.+|+++|++|+|+|+|||+|+++++
T Consensus       241 ~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~~  285 (288)
T PRK09260        241 NNLKYLHETLGE-KYRPAPLLEKYVKAGRLGRKTGRGVYDYTNREN  285 (288)
T ss_pred             HHHHHHHHHhCC-CCCCCHHHHHHHHCCCCccccCCEEEECCCCCC
Confidence            999999998887 799999999999999999999999999987543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.9e-63  Score=431.46  Aligned_cols=280  Identities=56%  Similarity=0.901  Sum_probs=269.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +++|+|||+|.||.+||..|+.+|++|+++|+++++++...+++++.++.+.+.|.++..+.+....+++++++++++++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~   82 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD   82 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence            57899999999999999999999999999999999999999999999999999998887777777788888888888999


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHH
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDE  164 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~  164 (297)
                      ||+||+|+|++.++|+++++++.+.++++++++|+||+++++.+++.+.++.|++++||++|+++++++|++++.+|+++
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e  162 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA  162 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHH
Q 022434          165 TFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS  244 (297)
Q Consensus       165 ~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~  244 (297)
                      +++.+.++++.+|+.|++++|.|||+.||++.+++|||++++++|++++++||.++++|+|||+|||+++|.+|++.+..
T Consensus       163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~  242 (282)
T PRK05808        163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA  242 (282)
T ss_pred             HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022434          245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       245 ~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~  284 (297)
                      +++.+++.+++++|+|++++++|+++|++|+|+|+|||+|
T Consensus       243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            9999999998878999999999999999999999999999

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-62  Score=430.42  Aligned_cols=284  Identities=55%  Similarity=0.921  Sum_probs=270.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+.+++.++.+.+.|.++..+.+....+++.++++++++
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   82 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA   82 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence            47899999999999999999999999999999999999999899998998888899888777777778889888888899


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.+++++.+.++++++|+|+||+++++.+++.+.+|.|++|+||++|++.++++|++.+.+|++
T Consensus        83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~  162 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE  162 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999988899999999999998999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|++++++||.+++.|+|||+|||+++|.+|++.+.
T Consensus       163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~  242 (292)
T PRK07530        163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL  242 (292)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~  287 (297)
                      .+++.+++.+++++|+|++++.+|+++|++|+|+|+|||+|+++
T Consensus       243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            99999999998878999999999999999999999999999654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.8e-62  Score=429.57  Aligned_cols=281  Identities=41%  Similarity=0.624  Sum_probs=266.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS---SIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ++++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+++++   .++.+++.|.++..+.+....++..+++.+
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            46899999999999999999999999999999999999988887776   367778888888777777788888888886


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~  160 (297)
                      .+++||+||+|+|++.++|+++++++++.+++++|++||||+++++++++.+.++.|++++||++|+++++++|++.+..
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            78999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchH
Q 022434          161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD  240 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~  240 (297)
                      |++++++.+.++++.+|+.|++++|.|||+.||++.++++||++++++|+++++|||++++.++|+|+|||+++|.+|+|
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCccc-----CCccccc
Q 022434          241 VCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKR-----GIGVFDY  284 (297)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~-----g~Gfy~~  284 (297)
                      ++..+++.+++.+++++|.|+++|++|+++|++|+|+     |+|||+|
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            9999999999999988899999999999999999999     9999998

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.6e-60  Score=416.10  Aligned_cols=271  Identities=32%  Similarity=0.476  Sum_probs=259.2

Q ss_pred             hHHHHHHHHHHCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC--ccc-cCCC
Q 022434           16 MGSGIAQLGVMDGLDVWLVDTDPD-------ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN--LKD-LHSA   85 (297)
Q Consensus        16 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~-~~~a   85 (297)
                      ||++||..++.+|++|+++|++++       .++.+.+++++.+++++++|.+++++.+..+++|+++++  ..+ +++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       467788999999999999999999888899999998865  334 8999


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHH
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDET  165 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~  165 (297)
                      |+||||+||+.++|+++|+++++.+++++|++||||+++++++++.+.+|+|++|+|||+||+.+++|||+.++.|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhhchHHH
Q 022434          166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIGLDVC  242 (297)
Q Consensus       166 ~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~Gl~~~  242 (297)
                      ++++.++++.+|+.|++++|.|||++||++.++++|++.++++|++++++||.+++.|+|||   +|||+++|.+|++++
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999   599999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022434          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~  286 (297)
                      ..+++.+++.+++++|+|++++++|+++|++|+|+|+|||+|++
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence            99999999998887899999999999999999999999999965

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4e-59  Score=407.79  Aligned_cols=279  Identities=27%  Similarity=0.403  Sum_probs=250.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||++||..|+.+|++|++||++++.++.+.+++++.++.+.+.|. ..   .....++++++++++ +
T Consensus         6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~i~~~~~l~~av   81 (321)
T PRK07066          6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-AP---GASPARLRFVATIEACV   81 (321)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Ch---hhHHhhceecCCHHHHh
Confidence            378999999999999999999999999999999999999999999999998888773 32   234468888888876 8


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      ++||+||||+||+.++|+++|+++.+.+++++||+||||+++++++++.+.+|+|++++||||||+.+++|||++++.|+
T Consensus        82 ~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~  161 (321)
T PRK07066         82 ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTA  161 (321)
T ss_pred             cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhhc
Q 022434          163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG  238 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~G  238 (297)
                      +++++++.+|++.+|++|+++ +|.|||++||++.++++||++++++|++++++||++++.|+|+|   +|||+++|.+|
T Consensus       162 ~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~G  241 (321)
T PRK07066        162 PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLAG  241 (321)
T ss_pred             HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhcC
Confidence            999999999999999999998 79999999999999999999999999999999999999999998   89999999999


Q ss_pred             hHH-HHHHHHHHHhhcCCC--CCCCcHHHHHHHH------cCCCCcccCCcccccCC
Q 022434          239 LDV-CLSIMKVLHTGLGDS--KYAPCPLLVQYVD------AGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       239 l~~-~~~~~~~~~~~~~~~--~~~p~~~l~~~~~------~g~~G~~~g~Gfy~~~~  286 (297)
                      +|. ....++++.+.+.++  .+.++.++.++++      ++.+|.++..+||.|.+
T Consensus       242 ld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd  298 (321)
T PRK07066        242 GDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD  298 (321)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            997 344445555554321  2344556666766      68999999999999974

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.4e-53  Score=374.04  Aligned_cols=280  Identities=37%  Similarity=0.584  Sum_probs=250.6

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +++++|+|||+|.||.+||..|+++|++|++||+++++++.+.+.+.+....+.+.+.     ......+++.+++.++ 
T Consensus         2 ~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~   76 (311)
T PRK06130          2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAA   76 (311)
T ss_pred             CCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHH
Confidence            4588999999999999999999999999999999999988887766544433322221     0022345667777775 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT  161 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~  161 (297)
                      +++||+||+|+|++.+.++.++.++.+.++++++|+|+|++++++++++.+.++.+++++||++||...++++++++..+
T Consensus        77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t  156 (311)
T PRK06130         77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKT  156 (311)
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCC
Confidence            88999999999999988999999999999999999999999999999998888889999999999998899999999999


Q ss_pred             cHHHHHHHHHHHHHcCCeEEEec-cchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhh
Q 022434          162 SDETFRATKALAERFGKTVVCSQ-DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFI  237 (297)
Q Consensus       162 ~~~~~~~~~~ll~~lg~~~i~v~-d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~  237 (297)
                      ++++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++|+++++++|.+++.++|||   +|||+++|.+
T Consensus       157 ~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~  236 (311)
T PRK06130        157 SPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMN  236 (311)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhh
Confidence            99999999999999999999885 7899999999999999999999999999999999999999999   6999999999


Q ss_pred             chHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022434          238 GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       238 Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~  288 (297)
                      |++.+..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus       237 Gl~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~  286 (311)
T PRK06130        237 GLDVHLAVASYLYQDLEN-RTTPSPLLEEKVEAGELGAKSGQGFYAWPPER  286 (311)
T ss_pred             ccchHHHHHHHHHHhcCC-cCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence            999999999999998876 79999999999999999999999999997543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.3e-45  Score=325.31  Aligned_cols=266  Identities=28%  Similarity=0.400  Sum_probs=249.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..++.+.+.|.++.++......++..++++++ ++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            56899999999999999999999999999999999999999999999999999998887777777888888889876 79


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||+|+|++.++++.+++++.+.+++++++.|+||+++++++++.+.++.++++.||++|++..+++|++++..|++
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~  161 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP  161 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999998899999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhh--
Q 022434          164 ETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFI--  237 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~--  237 (297)
                      +++++++++++.+|++++++ ++.+|+++||++.++++||+.++++|++|+++||.+++.|+|++   +|||++.|..  
T Consensus       162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~  241 (308)
T PRK06129        162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP  241 (308)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence            99999999999999999999 58899999999999999999999999999999999999999998   7999999987  


Q ss_pred             -chHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHc
Q 022434          238 -GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDA  270 (297)
Q Consensus       238 -Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~  270 (297)
                       |++........++..+.++.+.|+|++.++++.
T Consensus       242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~  275 (308)
T PRK06129        242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR  275 (308)
T ss_pred             ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence             899999999999999988889999999999884

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=1.6e-41  Score=275.56  Aligned_cols=179  Identities=47%  Similarity=0.693  Sum_probs=161.2

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCc
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      +|+|||+|.||++||..++.+|++|++||++++.++.+.+++++.++.+++.|.+++++.+....+++++++++++.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999977999


Q ss_pred             EEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHHH
Q 022434           87 IIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETF  166 (297)
Q Consensus        87 ~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~~  166 (297)
                      +|||++||+.++|+++|++|++.+++++||+||||++++++++..+.+|+|++|+|||+||+.++++||++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEecc
Q 022434          167 RATKALAERFGKTVVCSQD  185 (297)
Q Consensus       167 ~~~~~ll~~lg~~~i~v~d  185 (297)
                      +++..+++.+|+.|++++|
T Consensus       161 ~~~~~~~~~~gk~pv~v~D  179 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKD  179 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES
T ss_pred             HHHHHHHHHCCCEEEEecC
Confidence            9999999999999999876

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=1.8e-40  Score=309.11  Aligned_cols=244  Identities=25%  Similarity=0.400  Sum_probs=207.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||++||..|+++|++|++||+++++++.+.+.++.....+.   .+... .....+++++++++++ +
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAV   78 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHh
Confidence            46799999999999999999999999999999999988776543332222111   11110 0111245678888865 8


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      ++||+||+|+||+.++|+++++++.+.++++++|+|+||+++++++++.+.++.+++..||++||+.++++|+++++.|+
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~  158 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS  158 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhhc
Q 022434          163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG  238 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~G  238 (297)
                      ++++++++++++.+|++++++ ++.+||++||++.++++||+.++++|++|+++||.+++.|+|++   +|||+..|+.|
T Consensus       159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g  238 (495)
T PRK07531        159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG  238 (495)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence            999999999999999999999 58999999999999999999999999999999999999888775   79999999998


Q ss_pred             hHH-HHHHHHHHHh
Q 022434          239 LDV-CLSIMKVLHT  251 (297)
Q Consensus       239 l~~-~~~~~~~~~~  251 (297)
                      ++. ....++++.+
T Consensus       239 ~~~g~~~~~~~~~~  252 (495)
T PRK07531        239 GEAGMRHFLAQFGP  252 (495)
T ss_pred             cHHHHHHHHHHhch
Confidence            543 3444444433

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=6.2e-41  Score=286.99  Aligned_cols=265  Identities=31%  Similarity=0.431  Sum_probs=247.3

Q ss_pred             hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCcEEEEecccc
Q 022434           16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVES   95 (297)
Q Consensus        16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~   95 (297)
                      ||++||..+..+|++|+++|.+...++....++...+...+.++.++..+.+....+++.+.|++.++++|+||+++.|+
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHHHHHHHHHHHH
Q 022434           96 EDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER  175 (297)
Q Consensus        96 ~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~~~~~~~ll~~  175 (297)
                      +++|++++.+|++.+++++|+.+|||++++..+++.+.+|++++|.|||.|.+.++++|++.+..|+..++..+.+.-..
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCC
Q 022434          176 FGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD  255 (297)
Q Consensus       176 lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~  255 (297)
                      .|+.|+++++.+||.+||++.++.+++.+++.+-++++.++|...+ -+|||+||+.+.|..|+|+..+.-..    +++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t-~fGf~~g~~~L~d~~gfdv~eal~~g----l~~  235 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLIT-KFGFRVGERALADGVGFDVAEALAVG----LGD  235 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHH-hcCccccHHHHhhccCccHHHHHhhc----cch
Confidence            9999999999999999999999999999999996689999999987 59999999999999999987665544    444


Q ss_pred             CCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434          256 SKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       256 ~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~  287 (297)
                       .+.|. +..++++.|+.|+|+|+|||.|++.
T Consensus       236 -~~~~r-~~eel~~~~~~g~kT~kg~y~y~~~  265 (380)
T KOG1683|consen  236 -EIGPR-IEEELLEKGRAGIKTGKGIYPYARG  265 (380)
T ss_pred             -hccch-hHHHHHHHHhhhhhccCcccccccc
Confidence             23332 7899999999999999999999864

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=7.9e-37  Score=244.75  Aligned_cols=232  Identities=29%  Similarity=0.432  Sum_probs=215.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-VGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..||+|+|.|..|+++|..|+..||+|.+||+.+++++.+.+.+++.+.++.++|.+... .++....+|+.++++++ +
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v   82 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV   82 (313)
T ss_pred             ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence            679999999999999999999999999999999999999999999999999888765432 45566778888999988 8


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      ++|=.|-||+||++++|+.++++|+..+.+.+|+.|+||++.++.+.+.+.+..+++-.|+.|||...|++|+++.+-|+
T Consensus        83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs  162 (313)
T KOG2305|consen   83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS  162 (313)
T ss_pred             hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc---hHHHHHHh
Q 022434          163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPM---GPLQLADF  236 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~---Gp~~~~D~  236 (297)
                      |+++++.+++++.+|.+|+.. ++.-||..||+..+++||--++++.|+.+..|+|.+|..|+|...   ||++.+.+
T Consensus       163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HL  240 (313)
T KOG2305|consen  163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHL  240 (313)
T ss_pred             hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhc
Confidence            999999999999999998855 678899999999999999999999999999999999999999864   99999875

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.98  E-value=4.2e-31  Score=245.87  Aligned_cols=168  Identities=27%  Similarity=0.384  Sum_probs=155.6

Q ss_pred             hcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          109 ITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       109 ~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      .+.+++++.++.++.+.+..+....+|.+++|+|||+|++.++++||+.+..|++++++.+.++++.+|+.|++++|.||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G  416 (507)
T PRK08268        337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG  416 (507)
T ss_pred             cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence            45567788877777666667666678899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHH
Q 022434          189 FIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYV  268 (297)
Q Consensus       189 ~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~  268 (297)
                      |++||++.+++|||++++++|+++++|||.+++.|+|||+|||+|+|.+|++.++.+++.+++.+++++|+|+++|++|+
T Consensus       417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v  496 (507)
T PRK08268        417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA  496 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987999999999999


Q ss_pred             HcCCCCcccCCcccc
Q 022434          269 DAGRLGKKRGIGVFD  283 (297)
Q Consensus       269 ~~g~~G~~~g~Gfy~  283 (297)
                      ++|       +.||.
T Consensus       497 ~~G-------~~~~~  504 (507)
T PRK08268        497 ALG-------LSLRS  504 (507)
T ss_pred             HcC-------CCcCC
Confidence            986       46765

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.96  E-value=1.2e-29  Score=185.83  Aligned_cols=97  Identities=51%  Similarity=0.908  Sum_probs=92.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQY  267 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~  267 (297)
                      ||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|++++..+++.+++.++++.|+|++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999778999999999


Q ss_pred             HHcCCCCcccCCccccc
Q 022434          268 VDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       268 ~~~g~~G~~~g~Gfy~~  284 (297)
                      +++|++|+|+|+|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999999999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.94  E-value=6.9e-26  Score=210.45  Aligned_cols=122  Identities=31%  Similarity=0.499  Sum_probs=117.9

Q ss_pred             ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchH
Q 022434          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGP  230 (297)
Q Consensus       151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp  230 (297)
                      ..+||+++..|++++++.+.++++.+|+.|++++|.|||++||++.+++|||+.++++|+++++|||.+++.|+|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCC
Q 022434          231 LQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGR  272 (297)
Q Consensus       231 ~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~  272 (297)
                      |+|+|.+|+|.+..+++.+++.+++++|+|+++|++|+..|.
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~  499 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS  499 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence            999999999999999999999999878999999999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.93  E-value=4.2e-24  Score=182.43  Aligned_cols=189  Identities=23%  Similarity=0.323  Sum_probs=147.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-cccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-KDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~   83 (297)
                      ++|+|||+|.||.+||.+|.++||+|++|||++++ .+.+           .+.|.             ....++ +.++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~-----------~~~Ga-------------~~a~s~~eaa~   56 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL-----------AAAGA-------------TVAASPAEAAA   56 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH-----------HHcCC-------------cccCCHHHHHH
Confidence            48999999999999999999999999999999998 4333           45565             345555 4489


Q ss_pred             CCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCCc-------
Q 022434           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLMK-------  151 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~~-------  151 (297)
                      ++|+||.|+|++.++...++.  .+.+.++++++++. .||+++   .++++.+.    -.|.+|++.|-..+       
T Consensus        57 ~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~G  131 (286)
T COG2084          57 EADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAG  131 (286)
T ss_pred             hCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhC
Confidence            999999999999998888875  36666777777663 334443   35665542    35678888772221       


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      .+.|+.|  ++++.+++++++|+.+|++++++++. .|   .++|+++..    .+.||+.+.++.+++++.+..+++.+
T Consensus       132 tLtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~  209 (286)
T COG2084         132 TLTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGG  209 (286)
T ss_pred             ceEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence            3567776  89999999999999999999999875 22   488988764    46799999999999999999999876


Q ss_pred             cC
Q 022434          224 TN  225 (297)
Q Consensus       224 ~g  225 (297)
                      .+
T Consensus       210 ~~  211 (286)
T COG2084         210 AA  211 (286)
T ss_pred             cc
Confidence            43

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.88  E-value=3.8e-21  Score=168.58  Aligned_cols=188  Identities=21%  Similarity=0.347  Sum_probs=140.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSA   85 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a   85 (297)
                      +|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|..             ..++.++ +++|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~~-------------~~~~~~~~~~~a   56 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL-----------LAAGAV-------------TAETARQVTEQA   56 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCCc-------------ccCCHHHHHhcC
Confidence            59999999999999999999999999999999887665           334431             2344444 7899


Q ss_pred             cEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCC-------CceE
Q 022434           86 DIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL-------MKLV  153 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v  153 (297)
                      |+||+|+|++..++..++.  .+...++++++|+ ++|+.++   .++.+.+..    .++||+++|-.       .+.+
T Consensus        57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~----~g~~~~~~pv~g~~~~a~~g~l  131 (291)
T TIGR01505        57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKE----KGIDYLDAPVSGGEIGAIEGTL  131 (291)
T ss_pred             CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCCEEecCCCCCHHHHhcCCE
Confidence            9999999998877766553  2555667777776 3444444   356655532    24555554421       1235


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEEecc-chh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVCSQD-YAG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d-~~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                      .++.+  ++++++++++++++.+|++++++++ .++   +++|+++...    ++|++.++++.+++++++..++..+.+
T Consensus       132 ~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       132 SIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            66666  6899999999999999999999975 445   4888887654    899999999988999999999986654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.88  E-value=2.4e-21  Score=162.70  Aligned_cols=191  Identities=20%  Similarity=0.296  Sum_probs=147.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++||+||+|.||.+|+.+|.++||.|++|||+.++.+.+           .+.|.             ++.+++.+ ++
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga-------------~v~~sPaeVae   90 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA-------------RVANSPAEVAE   90 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch-------------hhhCCHHHHHh
Confidence            5789999999999999999999999999999999988776           67776             35666766 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHH---HHhhcCCCeE-EEecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCC--------
Q 022434           84 SADIIVEAIVESEDVKKKLFSE---LDKITKASAI-LASNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM--------  150 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~---l~~~~~~~~i-i~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~--------  150 (297)
                      +||+||.++|+..+++..++..   +....+.++. |.++|+.+.. .+|++....    .+..|++.| +.        
T Consensus        91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~----~~~~~vDAP-VSGg~~~A~~  165 (327)
T KOG0409|consen   91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN----KGGRFVDAP-VSGGVKGAEE  165 (327)
T ss_pred             hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh----CCCeEEecc-ccCCchhhhc
Confidence            9999999999999988888775   3333344444 5555555544 577776642    244555555 22        


Q ss_pred             ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhh
Q 022434          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~  222 (297)
                      ..+.++.+  ++++.++++.++++.+|+++++++.. .|   .++|+++...    +.|++.+.+.-+.|+..+-.++..
T Consensus       166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~  243 (327)
T KOG0409|consen  166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNT  243 (327)
T ss_pred             CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            23556666  89999999999999999999998653 22   5889887643    679999999888999998888887


Q ss_pred             ccCC
Q 022434          223 GTNQ  226 (297)
Q Consensus       223 g~g~  226 (297)
                      |..|
T Consensus       244 G~~~  247 (327)
T KOG0409|consen  244 GRCW  247 (327)
T ss_pred             CCcc
Confidence            6654

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.87  E-value=2.6e-20  Score=163.75  Aligned_cols=189  Identities=20%  Similarity=0.325  Sum_probs=141.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.++|..|++.|++|++||+++++.+.+           .+.|.             ...+++++ +++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~   58 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEV-----------IAAGA-------------ETASTAKAVAEQ   58 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------eecCCHHHHHhc
Confidence            589999999999999999999999999999999877654           33332             34556655 789


Q ss_pred             CcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434           85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KL  152 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~  152 (297)
                      ||+||+|+|++..++..++.  .+.+.++++++|+ ++|+..+   .++++.+..    .+.||+++|-..       +.
T Consensus        59 ~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g~  133 (296)
T PRK11559         59 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDGT  133 (296)
T ss_pred             CCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhCc
Confidence            99999999998876665543  3566677788777 4444444   355555432    256676665221       23


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc-chhh---hHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d-~~g~---i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +.++.+  ++++.++.++++++.+|+.++++++ .+|.   ++|+++..    +++|++.++++.++++++++.+++.+.
T Consensus       134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~  211 (296)
T PRK11559        134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL  211 (296)
T ss_pred             EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence            566666  6899999999999999999998865 3554   57776654    589999999998899999999998665


Q ss_pred             C
Q 022434          225 N  225 (297)
Q Consensus       225 g  225 (297)
                      +
T Consensus       212 ~  212 (296)
T PRK11559        212 A  212 (296)
T ss_pred             c
Confidence            4

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.82  E-value=4.9e-18  Score=147.86  Aligned_cols=155  Identities=17%  Similarity=0.189  Sum_probs=117.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|||+|.||.++|..|.++|++|++||++++.++.+           .+.|...           ...++.+.+++|
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~a   58 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA-----------IERGLVD-----------EASTDLSLLKDC   58 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHCCCcc-----------cccCCHhHhcCC
Confidence            379999999999999999999999999999999877665           3444321           123444457899


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCC------------CceE
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL------------MKLV  153 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~------------~~~v  153 (297)
                      |+||+|+|.+..  ..+++++.+.++++++|. +++++....+........++++.||+.++..            ....
T Consensus        59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~  135 (279)
T PRK07417         59 DLVILALPIGLL--LPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW  135 (279)
T ss_pred             CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence            999999997654  457788888888888775 5555655544444333457999999875531            1234


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      -++++..++++.++.++++++.+|.++++++.
T Consensus       136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~  167 (279)
T PRK07417        136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP  167 (279)
T ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            57788889999999999999999999988754

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.80  E-value=3.3e-18  Score=150.09  Aligned_cols=187  Identities=18%  Similarity=0.226  Sum_probs=132.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.+||..|+++||+|++||+++++.+.+           .+.|.             ....+..+ +++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~   57 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDAL-----------VDKGA-------------TPAASPAQAAAG   57 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------cccCCHHHHHhc
Confidence            489999999999999999999999999999999887765           33343             23445544 789


Q ss_pred             CcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434           85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KL  152 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~  152 (297)
                      ||+||.|+|++..++..+..  .+.+.++++++++ ++|+.++   .++++.+..    .|.+|++.|-..       +.
T Consensus        58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~----~g~~~ldapV~g~~~~a~~g~  132 (296)
T PRK15461         58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQA----KGFSMMDVPVGRTSDNAITGT  132 (296)
T ss_pred             CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEccCCCCHHHHHhCc
Confidence            99999999998766655442  2445566677665 4455544   355554422    133444443111       12


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      ..++.|  ++++++++++++|+.+|++++++++. .|   .++|+++.    ..+.|++.++++.+++++.+-.++..+
T Consensus       133 l~~~~g--g~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~  209 (296)
T PRK15461        133 LLLLAG--GTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGT  209 (296)
T ss_pred             EEEEEC--CCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            335555  79999999999999999999998763 12   36666543    457899999999889999877777644

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.79  E-value=4.4e-18  Score=156.94  Aligned_cols=192  Identities=14%  Similarity=0.198  Sum_probs=131.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..++|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+..       ...|.          ..+....++++ +
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence            467899999999999999999999999999999999887763210       00132          01224455555 4


Q ss_pred             C---CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc------
Q 022434           83 H---SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------  151 (297)
Q Consensus        83 ~---~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------  151 (297)
                      +   .+|+||.|+|++..+.. ++..+.+.+.++.||+ ++|+.+.. .++++.+.    -.|+||++.| +++      
T Consensus        68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~----~~Gi~fldap-VSGG~~gA~  141 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA----EKGLLYLGMG-VSGGEEGAR  141 (493)
T ss_pred             hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEeCC-CcCCHHHhc
Confidence            3   49999999999887654 4466666666555554 44443333 34555442    1245665544 211      


Q ss_pred             -eEEEecCCCCcHHHHHHHHHHHHHcCCe------EEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc-CCCCHHH
Q 022434          152 -LVEVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRILM----PMINEAFFTLYT-GVATKED  215 (297)
Q Consensus       152 -~vei~~~~~~~~~~~~~~~~ll~~lg~~------~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~-g~~~~~~  215 (297)
                       ...++.|  ++++++++++++|+.++.+      ++++++. .|   .++|+.+.    ..+.|++.++++ .+.++++
T Consensus       142 ~G~~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~  219 (493)
T PLN02350        142 NGPSLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEE  219 (493)
T ss_pred             CCCeEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Confidence             1246666  8999999999999999964      7888763 22   25555543    467899999988 3789999


Q ss_pred             HHHHH
Q 022434          216 IDAGM  220 (297)
Q Consensus       216 id~a~  220 (297)
                      +-.++
T Consensus       220 l~~vf  224 (493)
T PLN02350        220 LAEVF  224 (493)
T ss_pred             HHHHH
Confidence            88874

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.79  E-value=1.5e-19  Score=144.80  Aligned_cols=149  Identities=21%  Similarity=0.347  Sum_probs=101.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      |++|+|||+|.||++||.+|+++||+|++|||++++.+++           .+.|.             ...+++++ ++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~-----------~~~g~-------------~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL-----------AEAGA-------------EVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH-----------HHTTE-------------EEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhh-----------HHhhh-------------hhhhhhhhHhh
Confidence            4689999999999999999999999999999999988776           44443             57778777 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHH--HHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434           84 SADIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KL  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~  152 (297)
                      +||+||.|+|++.+++. ++..  +.+.++++.+++ ++|+++.. .++++.+..    .|.+|++.|-..       +.
T Consensus        57 ~~dvvi~~v~~~~~v~~-v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g~  131 (163)
T PF03446_consen   57 QADVVILCVPDDDAVEA-VLFGENILAGLRPGKIIIDMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEGT  131 (163)
T ss_dssp             HBSEEEE-SSSHHHHHH-HHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHTT
T ss_pred             cccceEeecccchhhhh-hhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhh----ccceeeeeeeecccccccccc
Confidence            89999999999887554 4444  666666776665 33333332 355555422    134555544111       12


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEE-ec
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVC-SQ  184 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~-v~  184 (297)
                      +.++.+  ++++.+++++++|+.++.++++ ++
T Consensus       132 l~~~~g--G~~~~~~~~~~~l~~~~~~v~~~~G  162 (163)
T PF03446_consen  132 LTIMVG--GDEEAFERVRPLLEAMGKNVYHYVG  162 (163)
T ss_dssp             EEEEEE--S-HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred             eEEEcc--CCHHHHHHHHHHHHHHhCCceeeeC
Confidence            345555  7899999999999999999884 35

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.78  E-value=6.4e-18  Score=147.86  Aligned_cols=185  Identities=22%  Similarity=0.247  Sum_probs=133.3

Q ss_pred             EECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCCcEE
Q 022434           10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSADII   88 (297)
Q Consensus        10 viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~V   88 (297)
                      |||+|.||.+||..|+++||+|++||+++++.+.+           .+.|.             ..++++.+ +++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEA-----------VAAGA-------------QAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHhcCCEE
Confidence            68999999999999999999999999999887665           33343             34555555 7899999


Q ss_pred             EEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCcHH---HHhhhcCCCCeEEEeecCCCCCCC-------ceEEEe
Q 022434           89 VEAIVESEDVKKKLF--SELDKITKASAILASNTSSISIT---RLASATSRPCQVIGMHFMNPPPLM-------KLVEVI  156 (297)
Q Consensus        89 i~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~l~~~~~~~~~~~g~h~~~p~~~~-------~~vei~  156 (297)
                      |.|+|.+..+...++  ..+.+.++++++++ ++|+++++   ++.+.+..    .|.+|.+.|-..       +.+.++
T Consensus        57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vi-d~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~  131 (288)
T TIGR01692        57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLI-DCSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM  131 (288)
T ss_pred             EEeCCChHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence            999998776544333  45666667777665 34455553   44444321    245566655211       123444


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCeEEEecc-chh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022434          157 RGADTSDETFRATKALAERFGKTVVCSQD-YAG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~d-~~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                      .+  ++++.+++++++|+.+|++++++++ ..|   .++|+++.    ..++|++.++++.+++++++..++..+.|
T Consensus       132 ~g--g~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       132 VG--GVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             EC--CCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence            44  6889999999999999999999986 333   37777654    35789999999988999999998886654

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.78  E-value=8.6e-18  Score=146.88  Aligned_cols=190  Identities=20%  Similarity=0.264  Sum_probs=129.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSA   85 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a   85 (297)
                      +|+|||+|.||.+||..|.++||+|++||+++. .+.+           .+.|.             ....+..+ ++.|
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~-------------~~~~s~~~~~~~a   56 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA-------------VSVETARQVTEAS   56 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC-------------eecCCHHHHHhcC
Confidence            799999999999999999999999999999874 2322           33443             23445544 7899


Q ss_pred             cEEEEeccccHHHHHHHHHH--HHhhcCCCeEEEecCCCCcH---HHHhhhcC-CCCeEEEeecCCC-CC--CCceEEEe
Q 022434           86 DIIVEAIVESEDVKKKLFSE--LDKITKASAILASNTSSISI---TRLASATS-RPCQVIGMHFMNP-PP--LMKLVEVI  156 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~g~h~~~p-~~--~~~~vei~  156 (297)
                      |+||.|+|++..++..++.+  +...+.++.+++ ++|++++   .++++.+. +..+++.. |+.. +.  ..+.+.++
T Consensus        57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~  134 (292)
T PRK15059         57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIM  134 (292)
T ss_pred             CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEE
Confidence            99999999987766655442  344455566555 3344443   34555442 22334442 2221 11  01123444


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022434          157 RGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                      .+  ++++.+++++++|+.+|++++++++. .|   .++|+++.    ..+.|++.+.++.++|++.+-.++..+.+
T Consensus       135 ~g--G~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~  209 (292)
T PRK15059        135 VG--GDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA  209 (292)
T ss_pred             Ec--CCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence            44  78999999999999999999999874 22   36677664    35789999999988899988777765553

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.77  E-value=1.1e-16  Score=138.61  Aligned_cols=151  Identities=19%  Similarity=0.267  Sum_probs=116.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||+|||+|.||.+|+..|.++|+    +|++| |+++++.+.+           .+.|.             ...++..
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~-----------~~~g~-------------~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF-----------QSLGV-------------KTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH-----------HHcCC-------------EEeCChH
Confidence            479999999999999999999998    89999 9998876554           33343             3455555


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-EecC
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRG  158 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~~  158 (297)
                      + +++||+||.|++. .. ..+++.++.+.++++++|++.+++++.+.+.+..... +++..+|..|......+. ++.+
T Consensus        57 e~~~~aDvVil~v~~-~~-~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVKP-QV-VKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEECc-HH-HHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            5 7899999999963 33 5677778877777888888888999998888766543 677777766654444433 4556


Q ss_pred             CCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          159 ADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      ..++++.++.++++|+.+|. ++++.
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~  158 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVD  158 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence            67899999999999999999 77764

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.76  E-value=4.4e-17  Score=143.21  Aligned_cols=184  Identities=17%  Similarity=0.192  Sum_probs=129.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC-
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS-   84 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~-   84 (297)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+.+           .+.|.             ....++++ +++ 
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~~   57 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVA-----------GKLGI-------------TARHSLEELVSKL   57 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHHhC
Confidence            79999999999999999999999999999999877655           33343             34555555 433 


Q ss_pred             --CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCc-HHHHhhhcCCCCeEEEeecCCCCCCCc------eEE
Q 022434           85 --ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSIS-ITRLASATSRPCQVIGMHFMNPPPLMK------LVE  154 (297)
Q Consensus        85 --aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~~l~~~~~~~~~~~g~h~~~p~~~~~------~ve  154 (297)
                        +|+||.|+|++..+ ..++..+.+.++++.+++ ++|++.. ..++.+.+..    .+.+|++.|-..+      ...
T Consensus        58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~  132 (299)
T PRK12490         58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC  132 (299)
T ss_pred             CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence              69999999988654 345566766666666655 3333332 2455555422    2345655441111      112


Q ss_pred             EecCCCCcHHHHHHHHHHHHHcCC---eEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCC--CCHHHHHHHH
Q 022434          155 VIRGADTSDETFRATKALAERFGK---TVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGV--ATKEDIDAGM  220 (297)
Q Consensus       155 i~~~~~~~~~~~~~~~~ll~~lg~---~~i~v~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~--~~~~~id~a~  220 (297)
                      ++.+  ++++++++++++++.+|.   +++++++ +|     .++|+++.    ..+.||+.++++.+  .+++++-.++
T Consensus       133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~  209 (299)
T PRK12490        133 LMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW  209 (299)
T ss_pred             EEec--CCHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence            4544  799999999999999997   6888876 33     36666554    45789999999877  7899988888


Q ss_pred             hh
Q 022434          221 KL  222 (297)
Q Consensus       221 ~~  222 (297)
                      +.
T Consensus       210 ~~  211 (299)
T PRK12490        210 RN  211 (299)
T ss_pred             cC
Confidence            74

>PLN02858 fructose-bisphosphate aldolase

Probab=99.75  E-value=3.9e-17  Score=166.99  Aligned_cols=191  Identities=14%  Similarity=0.124  Sum_probs=140.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..++|||||+|.||.+||.+|+++||+|++|||++++.+.+           .+.|.             ...+++.+ +
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~a   58 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKF-----------CELGG-------------HRCDSPAEAA   58 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------eecCCHHHHH
Confidence            45789999999999999999999999999999999988776           55564             35566666 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEE--eecCCCCCCC-----
Q 022434           83 HSADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIG--MHFMNPPPLM-----  150 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g--~h~~~p~~~~-----  150 (297)
                      ++||+||.|+|++..++..++.  .+.+.++++.+++ .+||+++   .++++.+..    .|  .+|++.|-..     
T Consensus        59 ~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A  133 (1378)
T PLN02858         59 KDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDL  133 (1378)
T ss_pred             hcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHH
Confidence            7899999999999887766653  3555555666554 3344443   356555432    23  4566655211     


Q ss_pred             --ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe-ccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHH
Q 022434          151 --KLVEVIRGADTSDETFRATKALAERFGKTVVCS-QDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAG  219 (297)
Q Consensus       151 --~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v-~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a  219 (297)
                        +.+.++.|  ++++++++++++|+.+|++++++ ++. .|   .++|+++.    ..+.||+.+.++.+++++.+-.+
T Consensus       134 ~~G~L~imvG--G~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v  211 (1378)
T PLN02858        134 LNGKLMIIAS--GRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI  211 (1378)
T ss_pred             hcCCeEEEEc--CCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence              12445555  79999999999999999998865 542 22   37777764    35789999999988999999888


Q ss_pred             HhhccC
Q 022434          220 MKLGTN  225 (297)
Q Consensus       220 ~~~g~g  225 (297)
                      +..+.|
T Consensus       212 l~~s~g  217 (1378)
T PLN02858        212 ISNAAG  217 (1378)
T ss_pred             HhcCCc
Confidence            887655

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.75  E-value=1.4e-16  Score=140.28  Aligned_cols=187  Identities=17%  Similarity=0.210  Sum_probs=130.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH-   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-   83 (297)
                      ++|+|||+|.||.+||..|+++|++|++||+++++.+.+           .+.|.             ...+++++ ++ 
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~   56 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEAL-----------AEEGA-------------TGADSLEELVAK   56 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHhh
Confidence            379999999999999999999999999999999887665           34443             34555554 33 


Q ss_pred             --CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec-CCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc------eE
Q 022434           84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASN-TSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------LV  153 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~-ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------~v  153 (297)
                        ++|+||.++|.+..+ ..++..+...++++.+++.. |+.... .++++.+..    .|.+|++.|-...      ..
T Consensus        57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~  131 (301)
T PRK09599         57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY  131 (301)
T ss_pred             cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence              369999999987554 34556666667666666533 333322 345544421    2455555441111      12


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCC----eEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc--CCCCHHHHHHH
Q 022434          154 EVIRGADTSDETFRATKALAERFGK----TVVCSQDY-AG---FIVNRILM----PMINEAFFTLYT--GVATKEDIDAG  219 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~----~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~--g~~~~~~id~a  219 (297)
                      .++.+  ++++++++++++++.++.    +++++++. .|   .++|+.+.    ..+.|++.++++  .+++++++-.+
T Consensus       132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~  209 (301)
T PRK09599        132 CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV  209 (301)
T ss_pred             eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            35555  899999999999999998    78888773 12   25555443    346799999987  77899999999


Q ss_pred             Hhhc
Q 022434          220 MKLG  223 (297)
Q Consensus       220 ~~~g  223 (297)
                      ++.|
T Consensus       210 ~~~~  213 (301)
T PRK09599        210 WRRG  213 (301)
T ss_pred             HhCC
Confidence            8865

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.72  E-value=9.3e-16  Score=134.70  Aligned_cols=191  Identities=16%  Similarity=0.162  Sum_probs=128.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc----c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK----D   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~   81 (297)
                      |+|+|||+|.||.+||..|+++||+|.+|||++++++.+           .+.|..             ...+.+    .
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l-----------~~~g~~-------------~~~s~~~~~~~   56 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAM-----------KEDRTT-------------GVANLRELSQR   56 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCc-------------ccCCHHHHHhh
Confidence            379999999999999999999999999999999987766           333321             122322    2


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcC-CCCeEEEeecCCCCC-CCceEEEec
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATS-RPCQVIGMHFMNPPP-LMKLVEVIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~~~~g~h~~~p~~-~~~~vei~~  157 (297)
                      +..+|+||.|+|.+ . ...++.++.+.++++.+|+..+++.+  ..++...+. ...+++..+....+. .....-++.
T Consensus        57 ~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~  134 (298)
T TIGR00872        57 LSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMI  134 (298)
T ss_pred             cCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeee
Confidence            45789999999987 4 55677888888877777665444432  234434332 222333333222211 001123444


Q ss_pred             CCCCcHHHHHHHHHHHHHcCC---eEEEeccc-hh---hhHHHHH-H---HHHHHHHHHHHcC--CCCHHHHHHHHhhcc
Q 022434          158 GADTSDETFRATKALAERFGK---TVVCSQDY-AG---FIVNRIL-M---PMINEAFFTLYTG--VATKEDIDAGMKLGT  224 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~---~~i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~~g--~~~~~~id~a~~~g~  224 (297)
                      +  ++++.++.++++|+.++.   ..+++++. .+   .++++.+ .   ..+.|++.++++.  ..+++++-.+++.|.
T Consensus       135 g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~  212 (298)
T TIGR00872       135 G--GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS  212 (298)
T ss_pred             C--CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence            4  799999999999999986   46788763 22   2444433 3   4577999999984  468999999988764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.72  E-value=6.1e-16  Score=141.87  Aligned_cols=204  Identities=18%  Similarity=0.173  Sum_probs=133.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|.||.++|..|+++||+|++||+++++++.+.+..    +..++.++.+.        ...+++++++++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED   72 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence            3799999999999999999999999999999999887653211    00011111100        01234567777775


Q ss_pred             -cCCCcEEEEeccccHH--------HHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhh-hcCC------CC-eEEEe
Q 022434           82 -LHSADIIVEAIVESED--------VKKKLFSELDKITKASAILASNTSSISI---TRLAS-ATSR------PC-QVIGM  141 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~-~~~~------~~-~~~g~  141 (297)
                       +++||+||.|+|++..        ....+.+.+.+.++++++|+. +|++++   .++.. .+..      .. -.+..
T Consensus        73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~  151 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAY  151 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence             8899999999998642        234556677777777776653 344433   23432 2111      01 11222


Q ss_pred             ecCCCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHcC-CeEEEeccchh----hhHHHHH----HHHHHHHH
Q 022434          142 HFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFG-KTVVCSQDYAG----FIVNRIL----MPMINEAF  203 (297)
Q Consensus       142 h~~~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~lg-~~~i~v~d~~g----~i~nri~----~~~~~Ea~  203 (297)
                         +|....+.         ..++.|  ++++.+++++++++.++ ..++++++...    .++++.+    .+++||+.
T Consensus       152 ---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~  226 (411)
T TIGR03026       152 ---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELA  226 (411)
T ss_pred             ---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               23222111         145666  68999999999999998 56777765321    3555555    57899999


Q ss_pred             HHHHcCCCCHHHHHHHHhhc
Q 022434          204 FTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       204 ~l~~~g~~~~~~id~a~~~g  223 (297)
                      .++++-++|++++-.++..+
T Consensus       227 ~la~~~GiD~~~v~~~~~~~  246 (411)
T TIGR03026       227 RICEALGIDVYEVIEAAGTD  246 (411)
T ss_pred             HHHHHhCCCHHHHHHHhCCC
Confidence            99999889999988887643

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.71  E-value=9.6e-16  Score=140.24  Aligned_cols=200  Identities=15%  Similarity=0.148  Sum_probs=128.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAVGTDAPRRLRCT   76 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      +++|+|||+|.||.++|..|+++||+|++||+++++++.....        +...+.+.++.|            ++.++
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g------------~l~~~   70 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG------------YLRAT   70 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC------------ceeee
Confidence            5799999999999999999999999999999999988764211        111122222233            23444


Q ss_pred             cCccccCCCcEEEEeccccH--------HHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCC--CC-eE-----
Q 022434           77 SNLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR--PC-QV-----  138 (297)
Q Consensus        77 ~~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~--~~-~~-----  138 (297)
                      ++   +++||+||.|+|.+.        .....+.+.+.+.++++++|+ .+|..+.. .++...+..  +. ++     
T Consensus        71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g  147 (415)
T PRK11064         71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAG  147 (415)
T ss_pred             cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCccccccc
Confidence            43   348999999999852        334456677888888877665 33333333 334332211  00 00     


Q ss_pred             --EEeec-CCCCCCCc---------eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccch-h---hhHHHHH----HHH
Q 022434          139 --IGMHF-MNPPPLMK---------LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYA-G---FIVNRIL----MPM  198 (297)
Q Consensus       139 --~g~h~-~~p~~~~~---------~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~-g---~i~nri~----~~~  198 (297)
                        ...++ ++|..+.+         ..-++.+  .+++.+++++++++.++..++++++.. +   .++++.+    .++
T Consensus       148 ~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~  225 (415)
T PRK11064        148 EQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAF  225 (415)
T ss_pred             CCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence              00111 23322222         1134433  389999999999999998777776521 1   3555544    368


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHh
Q 022434          199 INEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +||++.++++-++|++++-.++.
T Consensus       226 ~nE~~~lae~~GiD~~~v~~~~~  248 (415)
T PRK11064        226 ANELSLICADQGINVWELIRLAN  248 (415)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHhc
Confidence            99999999998899999877765

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.71  E-value=8.2e-16  Score=141.77  Aligned_cols=190  Identities=14%  Similarity=0.204  Sum_probs=132.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH-   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-   83 (297)
                      .+|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+..       ...|.           .+..++++++ ++ 
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~   63 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS   63 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence            4799999999999999999999999999999999887763211       01121           1235566655 43 


Q ss_pred             --CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCCCCc-------e
Q 022434           84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK-------L  152 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~-------~  152 (297)
                        .+|+||.+++....+ ..++.++.+.+.++.||+..+++.+.  .+..+.+.    -.|+||++.| +++       .
T Consensus        64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldap-VSGG~~gA~~G  137 (470)
T PTZ00142         64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMG-VSGGEEGARYG  137 (470)
T ss_pred             CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCC-CCCCHHHHhcC
Confidence              589999999887664 45667788878877777655544433  23333331    2356776655 222       1


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCe------EEEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHH
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDID  217 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~------~i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id  217 (297)
                      ..++.|  ++++++++++++|+.++.+      +.++++. .|   .++++.+ .   ..+.|++.+++ ..+.+++++-
T Consensus       138 ~~lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~  215 (470)
T PTZ00142        138 PSLMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELS  215 (470)
T ss_pred             CEEEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            246666  8999999999999999987      6778763 23   2444433 3   46789999997 5668898887


Q ss_pred             HHHh
Q 022434          218 AGMK  221 (297)
Q Consensus       218 ~a~~  221 (297)
                      .++.
T Consensus       216 ~v~~  219 (470)
T PTZ00142        216 EVFN  219 (470)
T ss_pred             HHHH
Confidence            7763

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.70  E-value=9.2e-15  Score=127.10  Aligned_cols=151  Identities=20%  Similarity=0.259  Sum_probs=107.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +|+|||+|.||.++|..|.++|+  +|++||+++++++.+           .+.|...            ...+.+++.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~-----------~~~g~~~------------~~~~~~~~~~   58 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKA-----------LELGLVD------------EIVSFEELKK   58 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH-----------HHCCCCc------------ccCCHHHHhc
Confidence            79999999999999999999996  788999999876654           3344321            1234444556


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-HH-HHhhhcCCCCeEEEeecCCC-----C-C------CC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-IT-RLASATSRPCQVIGMHFMNP-----P-P------LM  150 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~-~l~~~~~~~~~~~g~h~~~p-----~-~------~~  150 (297)
                      ||+||.|+|.+.  ..+++.++.+ ++++++|++.+|+.. +. .+.+.  .+.++++.||+.+     | .      ..
T Consensus        59 aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g  133 (275)
T PRK08507         59 CDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYEG  133 (275)
T ss_pred             CCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence            999999999765  4457777877 777887775444322 22 22222  2357999999843     2 1      11


Q ss_pred             ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      ..+.+++...++++.++.+.++++.+|.+++++.+
T Consensus       134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  168 (275)
T PRK08507        134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA  168 (275)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            23456676778899999999999999999998854

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.70  E-value=9.5e-16  Score=138.66  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=122.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |+|+|||+|.||.++|..|+. ||+|++||+++++++.+.+...    ..++.+...          ...+++.+.+.++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~   69 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNE   69 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhh
Confidence            379999999999999988875 9999999999999988755321    122222211          1234555565554


Q ss_pred             -cCCCcEEEEeccccHHH---------HHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCC
Q 022434           82 -LHSADIIVEAIVESEDV---------KKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL  149 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~---------k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~  149 (297)
                       +++||+||+|+|++.+.         ...+.+.+.. .+++.+++ .+|..+.. +++...+..    .++.| +|..+
T Consensus        70 ~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~----~~v~~-~PE~l  143 (388)
T PRK15057         70 AYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT----ENIIF-SPEFL  143 (388)
T ss_pred             hhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc----CcEEE-Ccccc
Confidence             78999999999987432         2344566666 45555554 44433333 355544321    12222 44433


Q ss_pred             Cce---------EEEecCCCCcHHHHHHHHHHHHH--cCCeEE-Eeccc-hh---hhHHHHH----HHHHHHHHHHHHcC
Q 022434          150 MKL---------VEVIRGADTSDETFRATKALAER--FGKTVV-CSQDY-AG---FIVNRIL----MPMINEAFFTLYTG  209 (297)
Q Consensus       150 ~~~---------vei~~~~~~~~~~~~~~~~ll~~--lg~~~i-~v~d~-~g---~i~nri~----~~~~~Ea~~l~~~g  209 (297)
                      .+.         -.++.|  ++++..+++.+++..  ++..+. ++.+. .+   .++++.+    .+++||+..++++-
T Consensus       144 ~~G~a~~d~~~p~rvv~G--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~  221 (388)
T PRK15057        144 REGKALYDNLHPSRIVIG--ERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL  221 (388)
T ss_pred             cCCcccccccCCCEEEEE--cCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            221         135555  345667778887754  454333 45442 12   2455444    36899999999998


Q ss_pred             CCCHHHHHHHHh
Q 022434          210 VATKEDIDAGMK  221 (297)
Q Consensus       210 ~~~~~~id~a~~  221 (297)
                      ++|.+++-.++.
T Consensus       222 GiD~~eV~~a~~  233 (388)
T PRK15057        222 GLNTRQIIEGVC  233 (388)
T ss_pred             CcCHHHHHHHhc
Confidence            899999888874

>PLN02858 fructose-bisphosphate aldolase

Probab=99.70  E-value=6e-16  Score=158.39  Aligned_cols=193  Identities=17%  Similarity=0.200  Sum_probs=135.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||.+|+++||+|++||+++++.+.+           .+.|.             ...+++.+ ++
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~~~  379 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRF-----------ENAGG-------------LAGNSPAEVAK  379 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHh
Confidence            3789999999999999999999999999999999887765           44443             23455555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KL  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~  152 (297)
                      +||+||.|+|++.+++..++.  .+.+.++++.+++ ++|.++.. .++++.+..  .-.|.+|++.|-..       +.
T Consensus       380 ~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G~  457 (1378)
T PLN02858        380 DVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMGT  457 (1378)
T ss_pred             cCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcCC
Confidence            999999999988877666543  2444455555554 33333332 355555422  01345565554111       12


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      +.++.+  ++++.+++++++|+.+|++++++...+|     .++|+++.    ..++|++.++++.+++++.+-.++..+
T Consensus       458 L~imvg--G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s  535 (1378)
T PLN02858        458 LTIMAS--GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNA  535 (1378)
T ss_pred             ceEEEE--CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence            345555  6889999999999999998887543333     37777654    457899999999889999988877765


Q ss_pred             cC
Q 022434          224 TN  225 (297)
Q Consensus       224 ~g  225 (297)
                      .|
T Consensus       536 ~g  537 (1378)
T PLN02858        536 GG  537 (1378)
T ss_pred             cc
Confidence            54

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.70  E-value=4.5e-15  Score=128.57  Aligned_cols=152  Identities=22%  Similarity=0.305  Sum_probs=116.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG---LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +++|+|||+|.||..++..|.++|   ++|.++||++++.+.+.+.          .|.             ..+.+.++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g~-------------~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YGV-------------RAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cCC-------------eecCChHH
Confidence            358999999999999999999999   7899999998876654211          121             23445544


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceE-EEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ei~~~~  159 (297)
                       +.++|+||.|+|...  ..++++++.+.+  +.+|++.+++++.+.+...++...+++..||..|......+ .+.++.
T Consensus        59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence             778999999998543  556777777665  46777888899988888877655688899998776544444 356777


Q ss_pred             CCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          160 DTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      .++++.++.++.+|+.+|..+++.
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~  158 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVD  158 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEEC
Confidence            789999999999999999855443

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.70  E-value=4.8e-15  Score=133.41  Aligned_cols=157  Identities=21%  Similarity=0.240  Sum_probs=112.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.+||..|.++|++|.+|+++++..+....         ...|...           ..+++.++ +++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998875443310         1122211           12344444 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHh-hcCCCeEEEecCCCC--cHHHHhhhcCCCCeEEEeecCCCCCC------------
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPL------------  149 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~------------  149 (297)
                      ||+||+|+|.+.  ...++.++.+ .++++++|...+|.-  ..+.+...+....++++.||+..+..            
T Consensus        61 aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVPVDA--TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            999999999753  5688888886 367787776444432  22445554455678999999754321            


Q ss_pred             CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       150 ~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      ....-++++..++++.++.++++++.+|..++++.
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~  173 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLD  173 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            11244677777899999999999999999998774

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.69  E-value=1.1e-14  Score=126.03  Aligned_cols=152  Identities=20%  Similarity=0.269  Sum_probs=120.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.+          +.|.             ...++.++
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~----------~~g~-------------~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD----------KYGI-------------TITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH----------hcCc-------------EEeCCcHH
Confidence            479999999999999999999885    69999999987765411          1232             34455554


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEE-ecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEV-IRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei-~~~~  159 (297)
                       +++||+||.|++.  .....+++++.+.++++++++|...+++++.+.+.++.+.+++.+.|.-|..+...+.. ..+.
T Consensus        60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence             7899999999995  33667788888888888899999999999999998865567888888777655555444 4666


Q ss_pred             CCcHHHHHHHHHHHHHcCCeEEE
Q 022434          160 DTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      ..+++..+.++.+|+.+|...+.
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~~~~  160 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQTEVV  160 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEE
Confidence            77888999999999999997544

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.69  E-value=1.9e-16  Score=153.68  Aligned_cols=105  Identities=23%  Similarity=0.412  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHH
Q 022434          166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDV  241 (297)
Q Consensus       166 ~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~  241 (297)
                      .+.+.+++..+++.+..+.+.+++|.||++.+++|||++++++|+ ++++|||.++.+|+|||+   |||+++|.+|++.
T Consensus       624 ~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~  703 (737)
T TIGR02441       624 NSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADK  703 (737)
T ss_pred             CHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHH
Confidence            344556677777777655678999999999999999999999999 699999999999999997   9999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCcHHHHHHHHc-C
Q 022434          242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDA-G  271 (297)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~-g  271 (297)
                      +...++.+++.+++ +|+|+++|.+|+++ |
T Consensus       704 v~~~~~~l~~~~g~-~~~p~~lL~~~~~~~g  733 (737)
T TIGR02441       704 LVDKMEKYAAAYGV-QFTPCQLLLDHAKSPG  733 (737)
T ss_pred             HHHHHHHHHHHhCC-CcCCCHHHHHHHHhcC
Confidence            99999999999997 89999999999986 5

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=1.4e-14  Score=126.55  Aligned_cols=201  Identities=14%  Similarity=0.168  Sum_probs=138.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI--------SSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      .+|+|||+|++|.++|..++++|++|+.+|+++.+++.+.+..        ...+...++.            ++++.++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~------------g~lraTt   77 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVES------------GKLRATT   77 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhc------------CCceEec
Confidence            7899999999999999999999999999999999988764321        1112223333            4568999


Q ss_pred             CccccCCCcEEEEeccccH--------HHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhc-------CCCCeEEE
Q 022434           78 NLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASAT-------SRPCQVIG  140 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~-------~~~~~~~g  140 (297)
                      +.+.++.||++|.|||+..        .......+.|.+.++.+.+++ -+|+.+.. +++...+       ..+..|.-
T Consensus        78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l  157 (436)
T COG0677          78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL  157 (436)
T ss_pred             ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence            9999999999999999754        344556667888888776554 44444433 3443322       22223322


Q ss_pred             eecCCCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccch-h---h----hHHHHHHHHHHHHH
Q 022434          141 MHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDYA-G---F----IVNRILMPMINEAF  203 (297)
Q Consensus       141 ~h~~~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~-g---~----i~nri~~~~~~Ea~  203 (297)
                      .  ++|.+..|.         ..|+.|  .+|...+.+..+++.+-...+.+.+.. .   .    +...+..+++||..
T Consensus       158 a--ysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla  233 (436)
T COG0677         158 A--YSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA  233 (436)
T ss_pred             e--eCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            2  355554442         235555  688999999999999866666665432 1   2    34445578999999


Q ss_pred             HHHHcCCCCHHH-HHHHHhh
Q 022434          204 FTLYTGVATKED-IDAGMKL  222 (297)
Q Consensus       204 ~l~~~g~~~~~~-id~a~~~  222 (297)
                      .++++-+++..+ |+.|-+.
T Consensus       234 li~~~~GIdvwevIeaAnt~  253 (436)
T COG0677         234 LICNAMGIDVWEVIEAANTK  253 (436)
T ss_pred             HHHHHhCCcHHHHHHHhccC
Confidence            999887778555 6666655

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.68  E-value=5.3e-15  Score=128.85  Aligned_cols=191  Identities=13%  Similarity=0.151  Sum_probs=130.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .++|+|||+|.||.+|+..|.++|    ++|+++||+++ +++.+.          .+.|.             ..+.+.
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~----------~~~g~-------------~~~~~~   59 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELH----------QKYGV-------------KGTHNK   59 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHH----------HhcCc-------------eEeCCH
Confidence            469999999999999999999998    88999999764 444331          11122             344555


Q ss_pred             cc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc-eEEEec
Q 022434           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIR  157 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vei~~  157 (297)
                      .+ +++||+||.|++.+.  ..+++.++.+.++++++|++..++++++.+.+.+....++++.+|..|..... ..-++.
T Consensus        60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~  137 (279)
T PRK07679         60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP  137 (279)
T ss_pred             HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence            54 688999999998654  34566778777777888888888999988888775555788888865544433 333446


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccch-----hh--hHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhh
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDYA-----GF--IVNRILMPMINEAFF-TLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~-----g~--i~nri~~~~~~Ea~~-l~~~g~~~~~~id~a~~~  222 (297)
                      +...+++.++.++++|+.+|...++ .+.-     +.  -...+ ...+.|++. ...+.+.++++...++..
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~~~~v-~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~~  208 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGLVSVV-EEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLILQ  208 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCcEEEe-CHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            6667789999999999999986542 2110     00  00011 233344443 455555787776666554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.67  E-value=1.9e-15  Score=136.42  Aligned_cols=140  Identities=19%  Similarity=0.280  Sum_probs=108.9

Q ss_pred             CCcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-c
Q 022434            4 KMKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-D   81 (297)
Q Consensus         4 ~~~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~   81 (297)
                      .+++|+||| +|.||.++|..|.++||+|++||+++..                                     +.+ .
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~-------------------------------------~~~~~  139 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD-------------------------------------RAEDI  139 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch-------------------------------------hHHHH
Confidence            357899998 9999999999999999999999986310                                     111 2


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCCCeEEEeecCCCCCCCceEE--Eec
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLMKLVE--VIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve--i~~  157 (297)
                      +++||+||+|+|++.  ...++.++.+ ++++++|+.++|.-  ++..+.+...  .+++|.||+.+|....+..  ++.
T Consensus       140 ~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~  214 (374)
T PRK11199        140 LADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVV  214 (374)
T ss_pred             HhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEE
Confidence            468999999999876  4677888888 88999998887753  3466666543  3699999999886544322  444


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      .+.++++.++++.++++.+|.+++++..
T Consensus       215 ~~~~~~~~~~~~~~l~~~lG~~v~~~~~  242 (374)
T PRK11199        215 CDGRQPEAYQWLLEQIQVWGARLHRISA  242 (374)
T ss_pred             cCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence            5557888999999999999999998853

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.66  E-value=8.2e-15  Score=134.12  Aligned_cols=202  Identities=10%  Similarity=0.131  Sum_probs=127.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +.++|+|||+|+||.++|..|++ ||+|++||+++++++.+.+...    ..++.+.+            ..++.++++.
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~------------~g~l~~t~~~   71 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELRE------------ARYLKFTSEI   71 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHh------------hCCeeEEeCH
Confidence            45799999999999999999887 6999999999999887632110    01111111            1345677777


Q ss_pred             cccCCCcEEEEeccccH------HHHH--HHHHHHHhhcCCCeEEE-ecCCCCcHH-HHh-hhcCC--C----CeEEEee
Q 022434           80 KDLHSADIIVEAIVESE------DVKK--KLFSELDKITKASAILA-SNTSSISIT-RLA-SATSR--P----CQVIGMH  142 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~------~~k~--~~~~~l~~~~~~~~ii~-s~ts~~~~~-~l~-~~~~~--~----~~~~g~h  142 (297)
                      +.+++||++|.|||++.      ++..  ...+.|.+.++++.+++ .+|..+..+ ++. ..+..  .    ..+.-. 
T Consensus        72 ~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~-  150 (425)
T PRK15182         72 EKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVG-  150 (425)
T ss_pred             HHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEe-
Confidence            77899999999999873      2222  22345777777666554 344433332 221 22111  1    111111 


Q ss_pred             cCCCCCCCc---------eEEEecCCCCcHHHHHHHHHHHHHcC-CeEEEeccc-hh---hhHHHHH----HHHHHHHHH
Q 022434          143 FMNPPPLMK---------LVEVIRGADTSDETFRATKALAERFG-KTVVCSQDY-AG---FIVNRIL----MPMINEAFF  204 (297)
Q Consensus       143 ~~~p~~~~~---------~vei~~~~~~~~~~~~~~~~ll~~lg-~~~i~v~d~-~g---~i~nri~----~~~~~Ea~~  204 (297)
                       ++|..+.+         ...++.|  .+++..+.+..+++.+. ..++++.+. .+   .++++.+    .+++||++.
T Consensus       151 -~~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~  227 (425)
T PRK15182        151 -YSPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAI  227 (425)
T ss_pred             -eCCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23333322         1235666  46788899999999975 345555442 12   3566555    368999999


Q ss_pred             HHHcCCCCHHHHHHHHhh
Q 022434          205 TLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       205 l~~~g~~~~~~id~a~~~  222 (297)
                      ++++-++|+.++-.++..
T Consensus       228 lae~~GiD~~~v~~a~~~  245 (425)
T PRK15182        228 IFNRLNIDTEAVLRAAGS  245 (425)
T ss_pred             HHHHhCcCHHHHHHHhcC
Confidence            999988999988777543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.66  E-value=5.5e-14  Score=124.18  Aligned_cols=155  Identities=17%  Similarity=0.201  Sum_probs=112.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +++|+|||+|.||.++|..|.++|+  +|++||+++++.+.+           .+.|...           ....+.++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~   63 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-----------RELGLGD-----------RVTTSAAEA   63 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-----------HhCCCCc-----------eecCCHHHH
Confidence            4799999999999999999999995  899999999876654           2333211           12334443 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCC--------
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM--------  150 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~--------  150 (297)
                      +++||+||.|+|...  ...++.++.+.++++++|...+ +...   ..+........++++.|++.++...        
T Consensus        64 ~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dvg-s~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~  140 (307)
T PRK07502         64 VKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDVG-SVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE  140 (307)
T ss_pred             hcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeCc-cchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence            789999999999754  4567777877788887765433 3332   3444444444589999998764321        


Q ss_pred             ----ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          151 ----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       151 ----~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                          ..+.+++..+++++.++.+.++++.+|.+++++.
T Consensus       141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~  178 (307)
T PRK07502        141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD  178 (307)
T ss_pred             HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                1234566667889999999999999999998874

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=1.1e-14  Score=127.64  Aligned_cols=205  Identities=18%  Similarity=0.246  Sum_probs=137.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |||+|||.|++|...+.+|++.||+|+.+|.++++++.+.+..    +..++.+++++.        ..+|+++++|+++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~--------~~gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL--------ASGRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc--------ccCcEEEEcCHHH
Confidence            5899999999999999999999999999999999999887643    445666666543        2367899999987


Q ss_pred             -cCCCcEEEEeccccH--------HHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcC--CCCeEEEeecCCCC
Q 022434           82 -LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTSSISI---TRLASATS--RPCQVIGMHFMNPP  147 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~--~~~~~~g~h~~~p~  147 (297)
                       ++++|++|.||+++.        .....+.++|.++.+..++|+ +-||+|+   +.+.+.+.  .+.+-.++ -+||.
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v-~~NPE  150 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEV-ASNPE  150 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceE-ecChH
Confidence             899999999998743        345567778888888866555 5566665   23333221  11110011 02332


Q ss_pred             CCCce---------EEEecCCCCcHHHHHHHHHHHHHc--CCeEEEeccch-----hhhHHHHHH---HHHHHHHHHHHc
Q 022434          148 PLMKL---------VEVIRGADTSDETFRATKALAERF--GKTVVCSQDYA-----GFIVNRILM---PMINEAFFTLYT  208 (297)
Q Consensus       148 ~~~~~---------vei~~~~~~~~~~~~~~~~ll~~l--g~~~i~v~d~~-----g~i~nri~~---~~~~Ea~~l~~~  208 (297)
                      .+...         --++.|. .++.+.+.++++++..  ...|++..+..     .+..|.+++   .++||...+++.
T Consensus       151 FLREG~Av~D~~~PdRIViG~-~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~  229 (414)
T COG1004         151 FLREGSAVYDFLYPDRIVIGV-RSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK  229 (414)
T ss_pred             HhcCcchhhhccCCCeEEEcc-CChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11110         0145553 2334666667777654  34455443322     246777765   689999999999


Q ss_pred             CCCCHHHHHHHHh
Q 022434          209 GVATKEDIDAGMK  221 (297)
Q Consensus       209 g~~~~~~id~a~~  221 (297)
                      -++|.++|-.++.
T Consensus       230 ~g~D~~~V~~gIG  242 (414)
T COG1004         230 VGADVKQVAEGIG  242 (414)
T ss_pred             hCCCHHHHHHHcC
Confidence            8899999887763

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.65  E-value=3.7e-14  Score=125.95  Aligned_cols=190  Identities=17%  Similarity=0.174  Sum_probs=129.5

Q ss_pred             cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022434            6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV   65 (297)
Q Consensus         6 ~~I~viG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   65 (297)
                      +||.|.|+|+.                    |.+||..|+++||+|++||++++.++..      .++.+.+.|.     
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~------~~~~l~~~Gi-----   69 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEE------LWKKVEDAGV-----   69 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHH------HHHHHHHCCC-----
Confidence            47888998863                    8889999999999999999998865431      1122234442     


Q ss_pred             hcccCCCcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH----HHhhhcCCCCeEEE
Q 022434           66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG  140 (297)
Q Consensus        66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g  140 (297)
                              .++++..+ +++||+||.|+|.... .+.++..+.+.++++++|+ ++|+.++.    .+.+.+..+.+.++
T Consensus        70 --------~~asd~~eaa~~ADvVIlaVP~~~~-v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~g  139 (342)
T PRK12557         70 --------KVVSDDAEAAKHGEIHILFTPFGKK-TVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVG  139 (342)
T ss_pred             --------EEeCCHHHHHhCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccC
Confidence                    45556554 7899999999997663 4567778888888888776 45555543    34455544445667


Q ss_pred             eecCCCCCC----CceEEEecCC------CCcHHHHHHHHHHHHHcCCeEEEeccchh---hhHHHHHHH----HHHHHH
Q 022434          141 MHFMNPPPL----MKLVEVIRGA------DTSDETFRATKALAERFGKTVVCSQDYAG---FIVNRILMP----MINEAF  203 (297)
Q Consensus       141 ~h~~~p~~~----~~~vei~~~~------~~~~~~~~~~~~ll~~lg~~~i~v~d~~g---~i~nri~~~----~~~Ea~  203 (297)
                      +++++|..+    ....+++.+.      .++++.+++++++++.+|+++++++...+   ..+|+++.+    -..|++
T Consensus       140 i~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~  219 (342)
T PRK12557        140 ISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYY  219 (342)
T ss_pred             eeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777765432    1224555432      34889999999999999999987764333   245555543    456888


Q ss_pred             HHHHcCCCCHHHH
Q 022434          204 FTLYTGVATKEDI  216 (297)
Q Consensus       204 ~l~~~g~~~~~~i  216 (297)
                      .+.++-+.++.+.
T Consensus       220 ~l~~~~~~~p~~~  232 (342)
T PRK12557        220 SVGTKIIKAPKEM  232 (342)
T ss_pred             HHHHHhCCCHHHH
Confidence            8888766666554

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.62  E-value=1.7e-13  Score=126.14  Aligned_cols=155  Identities=18%  Similarity=0.267  Sum_probs=116.8

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      |+|+||| +|.||.++|..|..+|++|++||++++......          .+.|.             ..+++.++ ++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a----------~~~gv-------------~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVA----------KELGV-------------EYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHH----------HHcCC-------------eeccCHHHHhc
Confidence            4799997 799999999999999999999999987653321          12232             34455544 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC--CcHHHHhhhcCCCCeEEEeecCCCCC----CCceEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPP----LMKLVEVIR  157 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~----~~~~vei~~  157 (297)
                      +||+||.|+|.+.  ...++.++.+.++++++|++.+|.  .+.+.+.+.++...++++.||+..|.    ....+.+++
T Consensus        58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence            9999999999754  357788888888889988766663  33456666655556899999976543    223455777


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      +..++++.++.+.++++.+|.+++++..
T Consensus       136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~~  163 (437)
T PRK08655        136 TEKRSNPWFDKVKNFLEKEGARVIVTSP  163 (437)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence            7778899999999999999999987743

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.62  E-value=3.2e-14  Score=131.35  Aligned_cols=187  Identities=17%  Similarity=0.210  Sum_probs=126.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc----c
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD----L   82 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~   82 (297)
                      +|+|||+|.||.+||.+|+++||+|++|||++++.+.+           .+.+..        -..+...+++++    +
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l-----------~~~~~~--------g~~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEF-----------LAEHAK--------GKKIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH-----------HhhccC--------CCCceecCCHHHHHhhc
Confidence            48999999999999999999999999999999988766           222100        001123344443    3


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCCCCc-------eE
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK-------LV  153 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~-------~v  153 (297)
                      +.+|+||.++|.+..+ .+++.++.+.++++.+|+..+++.+.  .+..+.+.    -.|+||++.| +++       ..
T Consensus        62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~----~~gi~fvdap-VsGG~~gA~~G~  135 (467)
T TIGR00873        62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELK----AKGILFVGSG-VSGGEEGARKGP  135 (467)
T ss_pred             CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHH----hcCCEEEcCC-CCCCHHHHhcCC
Confidence            5689999999987664 45667787777777766644433332  23333332    1245666655 222       12


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeE------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHHH
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTV------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDIDA  218 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~------i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id~  218 (297)
                      .++.|  ++++++++++++|+.++.++      .++++. .|   .++++.+ .   ..+.|++.++. ..+.+++++-.
T Consensus       136 ~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~  213 (467)
T TIGR00873       136 SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAE  213 (467)
T ss_pred             cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            35554  89999999999999999874      677653 22   2555543 3   45789999985 46678888877


Q ss_pred             HH
Q 022434          219 GM  220 (297)
Q Consensus       219 a~  220 (297)
                      ++
T Consensus       214 v~  215 (467)
T TIGR00873       214 VF  215 (467)
T ss_pred             HH
Confidence            77

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.61  E-value=2.5e-14  Score=127.41  Aligned_cols=197  Identities=20%  Similarity=0.221  Sum_probs=126.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCCcEEecCccc-cC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-VGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..+|..|+++|++|++||++++.++.+.+           .+..... .......++..+++.++ ++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINA-----------DRENPRYLPGIKLPDNLRATTDLAEALA   70 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------cCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence            48999999999999999999999999999999987766532           1110000 00011123455666664 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-------HHHhhhcCCCCeEEEeecCCCCCCC-----c
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPLM-----K  151 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~~-----~  151 (297)
                      +||+||.|+|..  ....++.++.+.+++++++++.++++..       +.+.+.......   ..++..|...     .
T Consensus        71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~---~~~~~~P~~~~~~~~g  145 (325)
T PRK00094         71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAP---IAVLSGPSFAKEVARG  145 (325)
T ss_pred             CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCc---eEEEECccHHHHHHcC
Confidence            999999999974  3567778888888888887766655554       222332221001   1112222110     1


Q ss_pred             --eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh---------------------hHHHH----HHHHHHHHHH
Q 022434          152 --LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVNRI----LMPMINEAFF  204 (297)
Q Consensus       152 --~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~---------------------i~nri----~~~~~~Ea~~  204 (297)
                        ..-++.  +.+.+.++++.++|+..+..+++..|..+.                     +.++.    ....++|++.
T Consensus       146 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~  223 (325)
T PRK00094        146 LPTAVVIA--STDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR  223 (325)
T ss_pred             CCcEEEEE--eCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence              111222  257889999999999999888776664431                     12222    3356789999


Q ss_pred             HHHcCCCCHHHHHHHH
Q 022434          205 TLYTGVATKEDIDAGM  220 (297)
Q Consensus       205 l~~~g~~~~~~id~a~  220 (297)
                      +++.-+++++.+....
T Consensus       224 la~~~G~d~~~~~~~~  239 (325)
T PRK00094        224 LGVALGANPETFLGLA  239 (325)
T ss_pred             HHHHhCCChhhhhccc
Confidence            9988777888776543

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.59  E-value=5.7e-15  Score=143.48  Aligned_cols=86  Identities=33%  Similarity=0.562  Sum_probs=82.0

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022434          186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC  261 (297)
Q Consensus       186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~  261 (297)
                      .+|++.||++.+++|||++++++|+ ++++|||.+++.|+|||+   |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus       614 ~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~-~~~p~  692 (708)
T PRK11154        614 SANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD-RFTPC  692 (708)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC-ccCCC
Confidence            5799999999999999999999998 899999999999999997   999999999999999999999999988 89999


Q ss_pred             HHHHHHHHcCC
Q 022434          262 PLLVQYVDAGR  272 (297)
Q Consensus       262 ~~l~~~~~~g~  272 (297)
                      ++|.+|+++|.
T Consensus       693 ~~l~~~~~~~~  703 (708)
T PRK11154        693 ERLVEMAERGE  703 (708)
T ss_pred             HHHHHHHHcCC
Confidence            99999999863

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.58  E-value=8.9e-15  Score=141.81  Aligned_cols=86  Identities=34%  Similarity=0.549  Sum_probs=81.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022434          186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC  261 (297)
Q Consensus       186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~  261 (297)
                      .+|+++||++.+++|||++++++|+ ++++|||.++++|+|||.   |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus       607 ~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~-~~~p~  685 (699)
T TIGR02440       607 EASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGD-RFTPC  685 (699)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCC-CcCCC
Confidence            5789999999999999999999998 899999999999999996   999999999999999999999999988 89999


Q ss_pred             HHHHHHHHcCC
Q 022434          262 PLLVQYVDAGR  272 (297)
Q Consensus       262 ~~l~~~~~~g~  272 (297)
                      ++|.+|+++|.
T Consensus       686 ~~L~~~~~~~~  696 (699)
T TIGR02440       686 QRLVAMAAEKQ  696 (699)
T ss_pred             HHHHHHHHcCC
Confidence            99999998763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.58  E-value=1.8e-13  Score=117.91  Aligned_cols=157  Identities=24%  Similarity=0.283  Sum_probs=115.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC--cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN--LK   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~   80 (297)
                      .++|+|+|+|.||.++|..|..+|+.|.+++++.+  .++.+           .+.|...           ..+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence            47899999999999999999999999977766554  33333           3344422           12233  34


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCC-CC-----ce
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPP-LM-----KL  152 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~-~~-----~~  152 (297)
                      .++++|+||.|||-  ....++++++.+.++++++|...+|.-.  ++.+.+..+...++++.||+..|+ ..     ..
T Consensus        61 ~~~~aD~VivavPi--~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVPI--EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEeccH--HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            47889999999994  4456888999988999999987776553  355555543322899999988772 11     23


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      +-++++..++.+.++.++++++.+|.+++.+..
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~  171 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDA  171 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcCh
Confidence            557777778899999999999999999988743

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.57  E-value=3.4e-13  Score=124.59  Aligned_cols=205  Identities=12%  Similarity=0.181  Sum_probs=129.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+|+|||+|.+|..+|..|+++|  ++|+++|+++++++.+++..    +..++.++.++         ...++.+++++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~~   72 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTDV   72 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcCH
Confidence            58999999999999999999985  78999999999988764321    11222222211         12357889998


Q ss_pred             cc-cCCCcEEEEeccccH-------------HHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCC---CCeEEE
Q 022434           80 KD-LHSADIIVEAIVESE-------------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR---PCQVIG  140 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~-------------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~---~~~~~g  140 (297)
                      ++ +++||++|.|||++.             .....+.++|.+.++++.+|+ .+|..+.. +.+...+..   ...|- 
T Consensus        73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~-  151 (473)
T PLN02353         73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQ-  151 (473)
T ss_pred             HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeE-
Confidence            75 899999999997543             245566777888888877655 33333333 334333221   11110 


Q ss_pred             eecCCCCCCCc---------eEEEe-cCCC--CcHHHHHHHHHHHHHcCC-eEEEeccc-----hhhhHHHH---HHHHH
Q 022434          141 MHFMNPPPLMK---------LVEVI-RGAD--TSDETFRATKALAERFGK-TVVCSQDY-----AGFIVNRI---LMPMI  199 (297)
Q Consensus       141 ~h~~~p~~~~~---------~vei~-~~~~--~~~~~~~~~~~ll~~lg~-~~i~v~d~-----~g~i~nri---~~~~~  199 (297)
                      + .++|..+.+         ...++ .+..  ..++..+.+.++++.+-. .++.+.+.     .....|.+   ..+++
T Consensus       152 v-~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~  230 (473)
T PLN02353        152 I-LSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSV  230 (473)
T ss_pred             E-EECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 134433322         12344 4321  125578888999998743 34444332     12344433   35899


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHh
Q 022434          200 NEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       200 ~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      ||...++++-++|..++-.++.
T Consensus       231 NEla~lce~~giD~~eV~~~~~  252 (473)
T PLN02353        231 NAMSALCEATGADVSQVSHAVG  252 (473)
T ss_pred             HHHHHHHHHhCCCHHHHHHHhC
Confidence            9999999988899999888765

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.56  E-value=1.9e-12  Score=116.16  Aligned_cols=166  Identities=17%  Similarity=0.177  Sum_probs=107.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS----QAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|.||..+|..|+++||+|++||+++. .+.+           .+.|...    ..+......++..+++.+.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDEL-----------RAHGLTLTDYRGRDVRVPPSAIAFSTDPAA   70 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHH-----------HhcCceeecCCCcceecccceeEeccChhh
Confidence            5899999999999999999999999999999653 2222           2222210    0011111234555666666


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecCC----CCCCCc---eE
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMN----PPPLMK---LV  153 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~----p~~~~~---~v  153 (297)
                      ++++|+||.|++...  ..+++.++.+.++++++|++.++++.. +.+.+.+.....+.+.+++.    .|....   .-
T Consensus        71 ~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g  148 (341)
T PRK08229         71 LATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSG  148 (341)
T ss_pred             ccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCC
Confidence            889999999998754  457788888888888888877888775 55666654322334444321    221100   11


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      ++..+   ..+.++++.++|+..|.++.+.+|..+
T Consensus       149 ~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~  180 (341)
T PRK08229        149 ALAIE---ASPALRPFAAAFARAGLPLVTHEDMRA  180 (341)
T ss_pred             ceEec---CCchHHHHHHHHHhcCCCceecchhHH
Confidence            12222   124568889999999988888887643

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.56  E-value=1.1e-13  Score=123.33  Aligned_cols=196  Identities=17%  Similarity=0.165  Sum_probs=121.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||..|+++||+|++|+|++++.+.+.+...+. . +. .|.       ....++..++++++ ++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~-~-~~-~g~-------~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR-E-YL-PGV-------ALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc-c-cC-CCC-------cCCCCeEEeCCHHHHHc
Confidence            56899999999999999999999999999999988776653211000 0 00 010       11223456667665 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-----HHHHhhhcCC--CCeEEEeecCCCCCCC------
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-----ITRLASATSR--PCQVIGMHFMNPPPLM------  150 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~l~~~~~~--~~~~~g~h~~~p~~~~------  150 (297)
                      ++|+||+++|+..  ..+++    +.+++++++++.+.++.     ...+++.+..  ..++   .+...|...      
T Consensus        74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~---~~~~gP~~a~~~~~~  144 (328)
T PRK14618         74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARV---AVLSGPNHAEEIARF  144 (328)
T ss_pred             CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCe---EEEECccHHHHHHcC
Confidence            9999999999874  23344    33456666665555554     3344444321  0111   112222111      


Q ss_pred             -ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh---------------------hHH----HHHHHHHHHHHH
Q 022434          151 -KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVN----RILMPMINEAFF  204 (297)
Q Consensus       151 -~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~---------------------i~n----ri~~~~~~Ea~~  204 (297)
                       +...++.+  ++++.+++++++|+..+.++.+..|..|.                     +.+    .++...++|+..
T Consensus       145 ~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~  222 (328)
T PRK14618        145 LPAATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVR  222 (328)
T ss_pred             CCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence             12334443  68899999999999999888754443221                     112    223456789999


Q ss_pred             HHHcCCCCHHHHHHHHh
Q 022434          205 TLYTGVATKEDIDAGMK  221 (297)
Q Consensus       205 l~~~g~~~~~~id~a~~  221 (297)
                      +++.-+++++.+.....
T Consensus       223 la~~~G~~~~~~~~~~~  239 (328)
T PRK14618        223 FGVALGAEEATFYGLSG  239 (328)
T ss_pred             HHHHhCCCccchhcCcc
Confidence            99887788888766554

>PLN02256 arogenate dehydrogenase

Probab=99.54  E-value=3.9e-13  Score=117.83  Aligned_cols=154  Identities=16%  Similarity=0.122  Sum_probs=110.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..++|+|||+|.||.++|..|.+.|++|++||+++.. +.+           .+.|.             ...++.++ +
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a-----------~~~gv-------------~~~~~~~e~~   89 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIA-----------AELGV-------------SFFRDPDDFC   89 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHH-----------HHcCC-------------eeeCCHHHHh
Confidence            3578999999999999999999999999999998632 211           12232             23344544 3


Q ss_pred             -CCCcEEEEeccccHHHHHHHHHHH-HhhcCCCeEEEecCC--CCcHHHHhhhcCCCCeEEEeecCCCCCCCce------
Q 022434           83 -HSADIIVEAIVESEDVKKKLFSEL-DKITKASAILASNTS--SISITRLASATSRPCQVIGMHFMNPPPLMKL------  152 (297)
Q Consensus        83 -~~aD~Vi~~v~e~~~~k~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~------  152 (297)
                       .++|+||.|+|...  ..+++.++ ...++++++|++.+|  +...+.+.+.++...++++.||+.++.....      
T Consensus        90 ~~~aDvVilavp~~~--~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~  167 (304)
T PLN02256         90 EEHPDVVLLCTSILS--TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP  167 (304)
T ss_pred             hCCCCEEEEecCHHH--HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence             46999999999643  45677777 456778888877666  3445667776655557999999988764311      


Q ss_pred             EEEec----CCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          153 VEVIR----GADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       153 vei~~----~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      +-+.+    ...++++.++.++++++.+|.+++.+.
T Consensus       168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~  203 (304)
T PLN02256        168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS  203 (304)
T ss_pred             EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            11111    145688899999999999999998874

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.52  E-value=2.4e-12  Score=111.89  Aligned_cols=152  Identities=12%  Similarity=0.105  Sum_probs=113.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ++|+|||+|.||.+++..|.++|    ++|.+|+++++ +.+..           .+..           ..+..+.+.+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l-----------~~~~-----------~~~~~~~~~~   59 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQL-----------YDKY-----------PTVELADNEA   59 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHH-----------HHHc-----------CCeEEeCCHH
Confidence            57999999999999999999998    78999998753 22222           1110           0113345555


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEE-ecC
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEV-IRG  158 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei-~~~  158 (297)
                      + ++++|+||.|+|...  ..+++.++.+.++++++|+|...+++..++.+.++. .+++.+.|.-|..+...+.. ..+
T Consensus        60 e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~  136 (277)
T PRK06928         60 EIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHA  136 (277)
T ss_pred             HHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecC
Confidence            4 789999999998433  557888888777778888889999999999987753 36777777766655554444 455


Q ss_pred             CCCcHHHHHHHHHHHHHcCCeEEE
Q 022434          159 ADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      ...+++..+.++.+|+.+|...++
T Consensus       137 ~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        137 ETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCHHHHHHHHHHHHhCCCEEEE
Confidence            667888999999999999997765

>PRK07680 late competence protein ComER; Validated

Probab=99.52  E-value=2.7e-12  Score=111.54  Aligned_cols=150  Identities=17%  Similarity=0.240  Sum_probs=105.9

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +|+|||+|.||.+++..|.++|+    +|.++||++++.+.+.           +..           ..+..+.+.++ 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~-----------~~~-----------~g~~~~~~~~~~   59 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIK-----------ERY-----------PGIHVAKTIEEV   59 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHH-----------HHc-----------CCeEEECCHHHH
Confidence            79999999999999999999994    7999999988765541           110           01234555555 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCC-CceEEEecCCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-MKLVEVIRGAD  160 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-~~~vei~~~~~  160 (297)
                      ++++|+||.|++...  ..++++++.+.++++.+|++.+++++.+.+.+.+.  .+++.+++..|... .+..-++.+..
T Consensus        60 ~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~  135 (273)
T PRK07680         60 ISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR  135 (273)
T ss_pred             HHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence            789999999997433  45677888877777788888888888888887764  23444444222111 12223345555


Q ss_pred             CcHHHHHHHHHHHHHcCCeEEE
Q 022434          161 TSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      .+++..+.++++|+.+|....+
T Consensus       136 ~~~~~~~~~~~ll~~~G~~~~i  157 (273)
T PRK07680        136 CSEEDQQKLERLFSNISTPLVI  157 (273)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEE
Confidence            6788889999999999965444

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.52  E-value=1.2e-12  Score=114.95  Aligned_cols=184  Identities=19%  Similarity=0.145  Sum_probs=126.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.++|..|..+|++|++++++.++....          ..+.|.             ... +.++ ++
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~----------A~~~G~-------------~~~-s~~eaa~   72 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKK----------AEADGF-------------EVL-TVAEAAK   72 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHH----------HHHCCC-------------eeC-CHHHHHh
Confidence            4789999999999999999999999999988775433221          022232             233 4444 88


Q ss_pred             CCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC-------CCceEE-
Q 022434           84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP-------LMKLVE-  154 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~-------~~~~ve-  154 (297)
                      .||+|+.++|+...  ..++ .++.+.+++++++ +-.+++.+..+....+...+++-+.|-.|.+       ....+. 
T Consensus        73 ~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~  149 (330)
T PRK05479         73 WADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPC  149 (330)
T ss_pred             cCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceE
Confidence            99999999997654  5666 7788888888877 5677888876665554445677777777765       222222 


Q ss_pred             Ee-cCCCCcHHHHHHHHHHHHHcCCeEE-----Eecc-c-h---h--hhHHHHHHHHHHHHHHHHHcCCCCHHH
Q 022434          155 VI-RGADTSDETFRATKALAERFGKTVV-----CSQD-Y-A---G--FIVNRILMPMINEAFFTLYTGVATKED  215 (297)
Q Consensus       155 i~-~~~~~~~~~~~~~~~ll~~lg~~~i-----~v~d-~-~---g--~i~nri~~~~~~Ea~~l~~~g~~~~~~  215 (297)
                      ++ .....+.+..+.+..+++.+|..+.     ..++ . .   |  .++-.-+..++..++..+.+.+.+|+.
T Consensus       150 l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~  223 (330)
T PRK05479        150 LIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEM  223 (330)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence            22 3444568899999999999998764     2222 1 1   1  133334557788888888776667764

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.52  E-value=5.8e-12  Score=107.11  Aligned_cols=151  Identities=19%  Similarity=0.259  Sum_probs=119.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|+||.+|+..|.++|    .+|++.++++++.+.+.          .+.|.             ..+++.++
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~----------~~~g~-------------~~~~~~~~   58 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALA----------AEYGV-------------VTTTDNQE   58 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHH----------HHcCC-------------cccCcHHH
Confidence            58999999999999999999999    68999999999876431          12222             11444444


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-EecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~~~  159 (297)
                       +..+|+||.|+.  +....+++.++.. ..++.+|+|-..+++++.+.+.++ ..+++.+.|..|..+...+. +..+.
T Consensus        59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~  134 (266)
T COG0345          59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA  134 (266)
T ss_pred             HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence             788999999996  3446678888887 678889999999999999999987 56788888877776555554 44557


Q ss_pred             CCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          160 DTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      ..+++..+.+.++|+.+|...++-
T Consensus       135 ~~~~~~~~~v~~l~~~~G~v~~v~  158 (266)
T COG0345         135 NVSEEDKAFVEALLSAVGKVVEVE  158 (266)
T ss_pred             cCCHHHHHHHHHHHHhcCCeEEec
Confidence            789999999999999999987764

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.51  E-value=2e-12  Score=111.36  Aligned_cols=181  Identities=12%  Similarity=0.140  Sum_probs=121.2

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +|+|||+|.||.+|+..|.++|++   +.++++++++.+.+.           +..           ..+...++.++ +
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~-----------~~~-----------~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLA-----------ERF-----------PKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHH-----------HHc-----------CCceEeCCHHHHH
Confidence            799999999999999999999965   578999988766542           110           01134455555 6


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      +++|+||.|++.+ . ...++.++.  ..++.++++...+++.+.+.+.+....+++..+|..|......+..+..  . 
T Consensus        60 ~~aDvVilav~p~-~-~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~--~-  132 (258)
T PRK06476         60 DRSDVVFLAVRPQ-I-AEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP--P-  132 (258)
T ss_pred             HhCCEEEEEeCHH-H-HHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC--C-
Confidence            8899999999942 2 456666652  3567788888888999999888765456667777755543333333332  1 


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeccc--h------hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022434          163 DETFRATKALAERFGKTVVCSQDY--A------GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v~d~--~------g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                         .+.++++|+.+|..+++..+.  .      +...+  .+.++.++...+.+.+.++++....+.
T Consensus       133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~~  194 (258)
T PRK06476        133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYLA  194 (258)
T ss_pred             ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence               257889999999988743221  1      11222  224667777777776778777655443

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.50  E-value=5.2e-12  Score=108.03  Aligned_cols=155  Identities=15%  Similarity=0.214  Sum_probs=112.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL---D-VWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      ||. .+||+|||+|.||.+++..|+++|+   + ++++++ ++++++.+.+          +.+             +..
T Consensus         1 ~m~-~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~-------------~~~   56 (245)
T PRK07634          1 MLK-KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----------RYN-------------VST   56 (245)
T ss_pred             CCC-CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----------HcC-------------cEE
Confidence            654 4689999999999999999998873   3 677887 4665554411          112             134


Q ss_pred             ecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce-E
Q 022434           76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-V  153 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-v  153 (297)
                      +++.++ ++++|+||.++|...  ..+++.++.+..+ +.+|+|.+.+++++.+.+.++...+++..||..|..+... .
T Consensus        57 ~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~  133 (245)
T PRK07634         57 TTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSIS  133 (245)
T ss_pred             eCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCe
Confidence            456655 789999999999654  4677788877665 4688889999999999988765556777777555433322 2


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEE
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      -+......+++..+.++++|+.+|..+++
T Consensus       134 ~~~~~~~~~~~~~~~v~~lf~~~G~~~~~  162 (245)
T PRK07634        134 LYTMGQSVNETHKETLQLILKGIGTSQLC  162 (245)
T ss_pred             EEeeCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            23455667899999999999999998864

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.49  E-value=1.1e-11  Score=122.04  Aligned_cols=157  Identities=22%  Similarity=0.237  Sum_probs=114.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +++|+|||+|.||.+++..|.++|  ++|++||+++++++.+           .+.|...           ...++.++ 
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~   60 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-----------VSLGVID-----------RGEEDLAEA   60 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-----------HHCCCCC-----------cccCCHHHH
Confidence            578999999999999999999999  4899999999876654           3334311           12334443 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcC-CCCeEEEeecCCCCCC---------
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATS-RPCQVIGMHFMNPPPL---------  149 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~-~~~~~~g~h~~~p~~~---------  149 (297)
                      ++++|+||+|+|..  ....+++++.+.++++++|...++.-  ..+.+.+.+. .+.|+++.||+..+..         
T Consensus        61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~  138 (735)
T PRK14806         61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD  138 (735)
T ss_pred             hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence            78999999999964  36788888888888887765443322  2455655543 2568999999764322         


Q ss_pred             ---CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          150 ---MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       150 ---~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                         .+.+.++++..++++.++.++++++.+|..++++.+
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~  177 (735)
T PRK14806        139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDV  177 (735)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence               123567777778999999999999999998888743

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.48  E-value=7.9e-13  Score=121.63  Aligned_cols=177  Identities=17%  Similarity=0.229  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCChhhhcccCCCcEEecCccc-cC---CCcEEEE
Q 022434           16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSK-GQLSQAVGTDAPRRLRCTSNLKD-LH---SADIIVE   90 (297)
Q Consensus        16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~~-~~---~aD~Vi~   90 (297)
                      ||..||.+|+++||+|++|||++++.+.+           ++. |.         ...+....++++ ++   .+|+||.
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l-----------~~~~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~   60 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEF-----------LAEEGK---------GKKIVPAYTLEEFVASLEKPRKILL   60 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHH-----------HHhhCC---------CCCeEeeCCHHHHHhhCCCCCEEEE
Confidence            89999999999999999999999988876           331 21         012346677776 43   4899999


Q ss_pred             eccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc-------eEEEecCCCC
Q 022434           91 AIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK-------LVEVIRGADT  161 (297)
Q Consensus        91 ~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~-------~vei~~~~~~  161 (297)
                      |+|.+..+.. ++..+.+.+.++.||+ .+|+.+.. .+..+.+.    -.|+||++.| +++       ...+++|  +
T Consensus        61 mv~~g~~v~~-Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~----~~Gi~fvdap-VSGG~~gA~~G~siM~G--G  132 (459)
T PRK09287         61 MVKAGAPVDA-VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELA----EKGIHFIGMG-VSGGEEGALHGPSIMPG--G  132 (459)
T ss_pred             ECCCchHHHH-HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCeEEecC-CCCCHHHHhcCCEEEEe--C
Confidence            9999877554 5567777776666555 33444333 34444432    2356666655 222       1256666  8


Q ss_pred             cHHHHHHHHHHHHHcCCeE-------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHHc-CCCCHHHHHHHH
Q 022434          162 SDETFRATKALAERFGKTV-------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLYT-GVATKEDIDAGM  220 (297)
Q Consensus       162 ~~~~~~~~~~ll~~lg~~~-------i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~~-g~~~~~~id~a~  220 (297)
                      ++++++.++++|+.++.++       .++++. .|   .++++.+ .   ..+.|++.++++ .+.+++++-.++
T Consensus       133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~  207 (459)
T PRK09287        133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF  207 (459)
T ss_pred             CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999999999999887       788763 22   2455543 3   457899999994 568898887777

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.47  E-value=1.6e-11  Score=105.68  Aligned_cols=157  Identities=21%  Similarity=0.210  Sum_probs=104.6

Q ss_pred             cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022434            6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV   65 (297)
Q Consensus         6 ~~I~viG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   65 (297)
                      +||.|.|+|+.                    |.+||.+|+++||+|++||+++++.+..      .++.+.+.|.     
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e------~~e~LaeaGA-----   69 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDD------LWKKVEDAGV-----   69 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhh------hhHHHHHCCC-----
Confidence            47889998863                    8899999999999999999998765321      1122355564     


Q ss_pred             hcccCCCcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhc----CCCCeEEE
Q 022434           66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT----SRPCQVIG  140 (297)
Q Consensus        66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~----~~~~~~~g  140 (297)
                              ..+++..+ +++||+||.|+|++..++. ++..+.+.++++++|+ ++||+++..+...+    ....+-+|
T Consensus        70 --------~~AaS~aEAAa~ADVVIL~LPd~aaV~e-Vl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~  139 (341)
T TIGR01724        70 --------KVVSDDKEAAKHGEIHVLFTPFGKGTFS-IARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVG  139 (341)
T ss_pred             --------eecCCHHHHHhCCCEEEEecCCHHHHHH-HHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccC
Confidence                    34555554 8899999999998776544 4566777778888776 56666665433332    22223344


Q ss_pred             eecCCCCC--CCce--EEEecC------CCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          141 MHFMNPPP--LMKL--VEVIRG------ADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       141 ~h~~~p~~--~~~~--vei~~~------~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      +..|.|..  -++.  .-++.+      .-.+++.++++.++.+..++.++.+
T Consensus       140 v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~  192 (341)
T TIGR01724       140 ISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV  192 (341)
T ss_pred             eeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence            44444431  1111  112222      2257899999999999999999876

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.45  E-value=1.9e-14  Score=131.98  Aligned_cols=158  Identities=15%  Similarity=0.213  Sum_probs=116.8

Q ss_pred             cEEEEECCChhHHHHHH--HH----HHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQMGSGIAQ--LG----VMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .||+|||+|.||.+++.  .+    +.+|++|++||+++++++.....+++.+..    ..        ...++..++|+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~----~~--------~~~~I~~ttD~   68 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE----LG--------APLKIEATTDR   68 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh----cC--------CCeEEEEeCCH
Confidence            37999999999998666  23    556889999999999988876665444332    11        12456778886


Q ss_pred             c-ccCCCcEEEEecc----------ccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCC--CCeEEEeecCCC
Q 022434           80 K-DLHSADIIVEAIV----------ESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR--PCQVIGMHFMNP  146 (297)
Q Consensus        80 ~-~~~~aD~Vi~~v~----------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~--~~~~~g~h~~~p  146 (297)
                      + ++++||+||++++          +...+|..+++++.+.+++++++.+++|...+.++++.+..  | +.+.+||.||
T Consensus        69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP  147 (423)
T cd05297          69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP  147 (423)
T ss_pred             HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence            5 4899999999998          34778888999999999999999999999888888887753  5 7899999999


Q ss_pred             CCCC-----ceE--EEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434          147 PPLM-----KLV--EVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       147 ~~~~-----~~v--ei~~~~~~~~~~~~~~~~ll~~lg~~  179 (297)
                      +..+     +..  .++..   ..........+.+.+|..
T Consensus       148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~  184 (423)
T cd05297         148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEP  184 (423)
T ss_pred             HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCC
Confidence            8644     222  23322   222455555666777764

linked to 3D####ucture

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.45  E-value=4e-13  Score=130.72  Aligned_cols=86  Identities=24%  Similarity=0.400  Sum_probs=78.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL  263 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~  263 (297)
                      ..+.||++.+++|||++++++|+ ++++|||.++++|+|||+   |||+++|.+|++.+..+++.+. .+++ +|+|+++
T Consensus       625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~-~~~p~~~  702 (715)
T PRK11730        625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGP-LYQVPEG  702 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCC-CCCCCHH
Confidence            46999999999999999999996 899999999999999997   9999999999999999999764 5665 8999999


Q ss_pred             HHHHHHcCCCCcccCCccc
Q 022434          264 LVQYVDAGRLGKKRGIGVF  282 (297)
Q Consensus       264 l~~~~~~g~~G~~~g~Gfy  282 (297)
                      |++|+++|       ++||
T Consensus       703 L~~~v~~~-------~~f~  714 (715)
T PRK11730        703 LREMAANG-------ESYY  714 (715)
T ss_pred             HHHHHHcC-------CCCC
Confidence            99999876       4686

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.45  E-value=1.9e-12  Score=114.35  Aligned_cols=169  Identities=17%  Similarity=0.177  Sum_probs=110.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +.++|+|||+|.||++||..|+.+||+|++|+|++.                                     .++++ +
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~   45 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVL   45 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHH
Confidence            346899999999999999999999999999999853                                     11222 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEecCCCCcHH------H-HhhhcCCCCeEEEeecCCCCC------
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISIT------R-LASATSRPCQVIGMHFMNPPP------  148 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~~------~-l~~~~~~~~~~~g~h~~~p~~------  148 (297)
                      +++|+||.++|..  ..+.++.++... +++++++++.++++.+.      + +...+.. .++..  +..|..      
T Consensus        46 ~~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~  120 (308)
T PRK14619         46 ADADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQ  120 (308)
T ss_pred             hcCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhc
Confidence            6899999999974  356677778664 67788887776655432      1 1112111 12211  112211      


Q ss_pred             CCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-h--------------------hHHHH----HHHHHHHHH
Q 022434          149 LMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-F--------------------IVNRI----LMPMINEAF  203 (297)
Q Consensus       149 ~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-~--------------------i~nri----~~~~~~Ea~  203 (297)
                      ..+..-++.+  .+++.++.++++|...+.++++..|..| .                    +.++.    +...++|+.
T Consensus       121 ~~~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~  198 (308)
T PRK14619        121 GLPAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMI  198 (308)
T ss_pred             CCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            0112223333  6889999999999999988887666433 1                    22222    234568999


Q ss_pred             HHHHcCCCCHHHH
Q 022434          204 FTLYTGVATKEDI  216 (297)
Q Consensus       204 ~l~~~g~~~~~~i  216 (297)
                      .+++.-+.+++.+
T Consensus       199 ~l~~~~G~~~~t~  211 (308)
T PRK14619        199 RVGTHLGAQTETF  211 (308)
T ss_pred             HHHHHhCCCcccc
Confidence            9998766776655

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.44  E-value=5e-13  Score=129.75  Aligned_cols=84  Identities=30%  Similarity=0.471  Sum_probs=76.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcH
Q 022434          187 AGFIVNRILMPMINEAFFTLYTG-VATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP  262 (297)
Q Consensus       187 ~g~i~nri~~~~~~Ea~~l~~~g-~~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~  262 (297)
                      ...|+||++.+++||+++++++| +++++|||.++.+|+|||+   |||+++|.+|++.+...++.+. .+++ +|+|++
T Consensus       624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~-~~~p~~  701 (714)
T TIGR02437       624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGA-LYQVTA  701 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCC-CCCCCH
Confidence            34699999999999999999999 6789999999999999997   9999999999999999999654 7776 899999


Q ss_pred             HHHHHHHcCC
Q 022434          263 LLVQYVDAGR  272 (297)
Q Consensus       263 ~l~~~~~~g~  272 (297)
                      +|.+|+++|+
T Consensus       702 ~l~~~~~~g~  711 (714)
T TIGR02437       702 KLREMAKNGQ  711 (714)
T ss_pred             HHHHHHHcCC
Confidence            9999998763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.42  E-value=3.9e-11  Score=103.44  Aligned_cols=144  Identities=13%  Similarity=0.173  Sum_probs=105.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|+||.+|+..|.++|.    +++++|+++++.                 +             +....+..+
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~-------------~~~~~~~~~   53 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P-------------FVYLQSNEE   53 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C-------------eEEeCChHH
Confidence            589999999999999999999873    499999886431                 1             023334443


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce-EEEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-VEVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-vei~~~~  159 (297)
                       ++++|+||.|++..  ....++.++.+..+++ +|+|...+++.+.+...++...+++.+.|..|..+... .-+.++.
T Consensus        54 ~~~~~D~Vilavkp~--~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~  130 (260)
T PTZ00431         54 LAKTCDIIVLAVKPD--LAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANN  130 (260)
T ss_pred             HHHhCCEEEEEeCHH--HHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCC
Confidence             67899999999743  3667888888776654 56778889998888887654444555555555544443 3455666


Q ss_pred             CCcHHHHHHHHHHHHHcCCeEEE
Q 022434          160 DTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      ..+++..+.++.+|+.+|...++
T Consensus       131 ~~~~~~~~~v~~l~~~~G~~~~v  153 (260)
T PTZ00431        131 NVDSTDKKKVIDIFSACGIIQEI  153 (260)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEE
Confidence            67888899999999999997765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.42  E-value=5.9e-12  Score=112.59  Aligned_cols=138  Identities=20%  Similarity=0.232  Sum_probs=100.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-c
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-D   81 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~   81 (297)
                      .++|+|||. |.||.++|..|.+ .|++|+.+|++.+                                   ...+.+ .
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------------------------------~~~~~~~~   48 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------------------------------GSLDPATL   48 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------------------------------ccCCHHHH
Confidence            479999999 9999999999986 4899999998521                                   112333 3


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhh---cCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCCCce----
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKI---TKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLMKL----  152 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~---~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~~~----  152 (297)
                      +++||+||.|+|...  ..+++.++.+.   ++++++|...+|.-.  .+.+.   ....+|+|.||+..|...++    
T Consensus        49 v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~~~fVG~HPMaG~E~s~lf~g~  123 (370)
T PRK08818         49 LQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAML---ASQAEVVGLHPMTAPPKSPTLKGR  123 (370)
T ss_pred             hcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHHH---hcCCCEEeeCCCCCCCCCcccCCC
Confidence            789999999999654  55788888775   688998876555442  23332   22346999999987754332    


Q ss_pred             -EEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          153 -VEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       153 -vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                       +-+++.  ..++.+++++++++.+|.+++.+.
T Consensus       124 ~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~  154 (370)
T PRK08818        124 VMVVCEA--RLQHWSPWVQSLCSALQAECVYAT  154 (370)
T ss_pred             eEEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence             223443  455667889999999999998774

>PLN02712 arogenate dehydrogenase

Probab=99.41  E-value=8.6e-12  Score=120.03  Aligned_cols=154  Identities=18%  Similarity=0.126  Sum_probs=106.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +.++|+|||+|.||.++|..|.+.|++|++||++... +.+           .+.|.             ...++.++ +
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~Gv-------------~~~~~~~el~  422 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLGV-------------SYFSDADDLC  422 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcCC-------------eEeCCHHHHH
Confidence            3579999999999999999999999999999998542 222           22332             23455555 4


Q ss_pred             C-CCcEEEEeccccHHHHHHHHHHHHh-hcCCCeEEEecCCC--CcHHHHhhhcCCCCeEEEeecCCCCCCC--c---eE
Q 022434           83 H-SADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPLM--K---LV  153 (297)
Q Consensus        83 ~-~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~~--~---~v  153 (297)
                      + .+|+||.|+|..  ....++.++.. .+++++++++.+|+  .+.+.+...++...++++.||+.++...  +   ..
T Consensus       423 ~~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~  500 (667)
T PLN02712        423 EEHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA  500 (667)
T ss_pred             hcCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence            3 589999999953  34566777654 56778888866665  3445666655555579999999887643  1   11


Q ss_pred             -----EEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          154 -----EVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       154 -----ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                           -++.+.....+.++.+.++++.+|.+++.+.
T Consensus       501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms  536 (667)
T PLN02712        501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS  536 (667)
T ss_pred             hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence                 1122333344566777799999999998774

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.40  E-value=1.6e-12  Score=103.43  Aligned_cols=104  Identities=25%  Similarity=0.435  Sum_probs=77.9

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCccc-cCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ||+|||+|.||.++|..|+.+|++|++|.++++.++.+.+.           +.... ........++.+++|+++ +++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~-----------~~n~~~~~~~~l~~~i~~t~dl~~a~~~   69 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET-----------RQNPKYLPGIKLPENIKATTDLEEALED   69 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH-----------TSETTTSTTSBEETTEEEESSHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh-----------CCCCCCCCCcccCcccccccCHHHHhCc
Confidence            79999999999999999999999999999999877765321           11000 001223356788899876 899


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +|+||.++|...  .+.+++++.+++++++++++.+.++
T Consensus        70 ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   70 ADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             ccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence            999999999766  5689999999999999888888776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.39  E-value=1.1e-11  Score=104.05  Aligned_cols=163  Identities=16%  Similarity=0.198  Sum_probs=103.7

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      |+|+||| +|.||.++|..|+++||+|++++|++++++...+...+   .+...|.         ..++..+++.+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g~---------~~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGGS---------DIKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccCC---------CceEEEeChHHHHhc
Confidence            4799997 89999999999999999999999999887665332111   1111111         011222333345889


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-----------------HHHhhhcCCCCeEEEeecCCCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------------TRLASATSRPCQVIGMHFMNPP  147 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~l~~~~~~~~~~~g~h~~~p~  147 (297)
                      +|+||.|+|...  ..+++.++...+++ ++|++.+.+++.                 +.+++.++...+++..-...+.
T Consensus        69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a  145 (219)
T TIGR01915        69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA  145 (219)
T ss_pred             CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence            999999998644  45666777665554 677766666654                 3455555432565554332221


Q ss_pred             CC-------CceEEEecCCCCcHHHHHHHHHHHHHc-CCeEEEecc
Q 022434          148 PL-------MKLVEVIRGADTSDETFRATKALAERF-GKTVVCSQD  185 (297)
Q Consensus       148 ~~-------~~~vei~~~~~~~~~~~~~~~~ll~~l-g~~~i~v~d  185 (297)
                      ..       .+....+.|  -++++.+.+..+.+.+ |..|+.++.
T Consensus       146 ~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       146 VLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccCCc
Confidence            11       111223444  3577888899999999 999987764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.39  E-value=1.8e-12  Score=98.41  Aligned_cols=114  Identities=21%  Similarity=0.308  Sum_probs=75.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..||+|||+|++|..++..|.++||+|..+ .|+++..+++...                      .....+ .++++ +
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~-~~~~~~~   66 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAI-LDLEEIL   66 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT------TTGGG
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------cccccc-ccccccc
Confidence            468999999999999999999999999855 7887766655211                      111123 33444 8


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhh--cCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeec
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKI--TKASAILASNTSSISITRLASATSRPCQVIGMHF  143 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~  143 (297)
                      +++|++|.++|++.  ...+.++|...  ..++.+++.++...+.+.+............+||
T Consensus        67 ~~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   67 RDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             CC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             ccCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            89999999999985  56788888876  6788999988777777777666555667777875

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.38  E-value=2.4e-12  Score=104.85  Aligned_cols=107  Identities=18%  Similarity=0.286  Sum_probs=72.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI--------SSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |||+|||+|++|..+|..|+++||+|+.+|.++++++.+.+..        ...+.+.++            .+++.+++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence            5899999999999999999999999999999999888764321        222222222            35678888


Q ss_pred             Cccc-cCCCcEEEEecccc--------HHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           78 NLKD-LHSADIIVEAIVES--------EDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~--------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      +.++ +++||++|.|||.+        ......+.+.|.+.++++.+|+ .-|++++
T Consensus        69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp  124 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP  124 (185)
T ss_dssp             EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred             hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence            8887 89999999999864        3345667778888888877665 3444443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.37  E-value=1.3e-11  Score=107.05  Aligned_cols=165  Identities=22%  Similarity=0.346  Sum_probs=114.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|.++|..|+++||+|++|.|+++..++..+. +.+ .+++. |.       ....++.+++|+++ +++
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N-~~yLp-~i-------~lp~~l~at~Dl~~a~~~   71 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-REN-PKYLP-GI-------LLPPNLKATTDLAEALDG   71 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcC-ccccC-Cc-------cCCcccccccCHHHHHhc
Confidence            689999999999999999999999999999999988776433 111 11111 11       23466778899887 778


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH------HHH-hhhcCCCCeEEEeecCCCCCCC-------
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI------TRL-ASATSRPCQVIGMHFMNPPPLM-------  150 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~------~~l-~~~~~~~~~~~g~h~~~p~~~~-------  150 (297)
                      ||+|+.++|...  ..++++++...+++++++++.+.++..      +++ .+.++. ..   +-++..|+..       
T Consensus        72 ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~-~~---~~vLSGPs~A~EVa~g~  145 (329)
T COG0240          72 ADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD-NP---IAVLSGPSFAKEVAQGL  145 (329)
T ss_pred             CCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC-Ce---EEEEECccHHHHHhcCC
Confidence            999999999654  678888888888899998888877654      233 333331 12   1223334321       


Q ss_pred             ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      +..-++.+  .+++..+.++.+|..--.+++...|..|
T Consensus       146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G  181 (329)
T COG0240         146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG  181 (329)
T ss_pred             CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence            12222333  6888888888888886667777777665

>PLN02712 arogenate dehydrogenase

Probab=99.36  E-value=1.5e-10  Score=111.60  Aligned_cols=153  Identities=18%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L-   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-   82 (297)
                      .++|+|||+|.||..+|..|.+.|++|++||++... +.+           .+.|.             ...++.++ + 
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~Gv-------------~~~~d~~e~~~  106 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLGV-------------SFFLDPHDLCE  106 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcCC-------------EEeCCHHHHhh
Confidence            468999999999999999999999999999998543 222           22332             23455555 3 


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHH-hhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCCC-----ceEE
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELD-KITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLM-----KLVE  154 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~-----~~ve  154 (297)
                      +++|+||.|+|..  ....++.++. +.++++++|+..+|.-.  ...+...++...++++.||+..|...     ....
T Consensus       107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~  184 (667)
T PLN02712        107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF  184 (667)
T ss_pred             cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence            4699999999954  3566777775 55778888775544332  24455555444579999998877521     1111


Q ss_pred             Eec----C-CCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          155 VIR----G-ADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       155 i~~----~-~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      +..    + .....+.++++.++++.+|.+++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms  219 (667)
T PLN02712        185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS  219 (667)
T ss_pred             EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence            221    2 22234567778899999999998874

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.35  E-value=5.5e-12  Score=111.49  Aligned_cols=127  Identities=21%  Similarity=0.318  Sum_probs=92.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      +.+||+|||+|.||..+|..++..|+ +|+++|++++.++.-      .++.....      .......++..+++++++
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~------~ld~~~~~------~~~~~~~~I~~~~d~~~l   72 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGK------ALDISHSN------VIAGSNSKVIGTNNYEDI   72 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHH------HHHHHhhh------hccCCCeEEEECCCHHHh
Confidence            34799999999999999999999996 999999999865321      11111110      011122356666888889


Q ss_pred             CCCcEEEEec-------------------cccHHHHHHHHHHHHhhcCCC-eEEEecCCCCcHHHHhhhcCCC-CeEEEe
Q 022434           83 HSADIIVEAI-------------------VESEDVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGM  141 (297)
Q Consensus        83 ~~aD~Vi~~v-------------------~e~~~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~  141 (297)
                      ++||+||++.                   .++..+++++..++.+.+++. .+++||++.+....+......| .|++|+
T Consensus        73 ~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGl  152 (321)
T PTZ00082         73 AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGM  152 (321)
T ss_pred             CCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEe
Confidence            9999999955                   456677888889999998764 4667888887777777666554 678776


Q ss_pred             e
Q 022434          142 H  142 (297)
Q Consensus       142 h  142 (297)
                      +
T Consensus       153 g  153 (321)
T PTZ00082        153 A  153 (321)
T ss_pred             c
Confidence            5

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.34  E-value=2.4e-10  Score=100.56  Aligned_cols=148  Identities=18%  Similarity=0.209  Sum_probs=108.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|+||.++|..|..+|++|+++++. .++.+.+           .+.|.             ...+ .++ +
T Consensus         3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a-----------~~~Gv-------------~~~s-~~ea~   57 (314)
T TIGR00465         3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKA-----------TEDGF-------------KVGT-VEEAI   57 (314)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHH-----------HHCCC-------------EECC-HHHHH
Confidence            368999999999999999999999998876554 3333333           22332             2333 444 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCC-------CceE-E
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-------MKLV-E  154 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v-e  154 (297)
                      ++||+|+.++|+... ...+.+++.+.++++. +++-..++++..+...++...+++-+.|..|.+.       ...+ -
T Consensus        58 ~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~  135 (314)
T TIGR00465        58 PQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPT  135 (314)
T ss_pred             hcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeE
Confidence            899999999997634 4466677877777776 5567788888888777655557888888888863       4433 3


Q ss_pred             Ee-cCCCCcHHHHHHHHHHHHHcCCe
Q 022434          155 VI-RGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       155 i~-~~~~~~~~~~~~~~~ll~~lg~~  179 (297)
                      ++ .+...+.+..+.+..+++.+|..
T Consensus       136 l~a~~~~~~~~~~~~~~~~~~~iG~~  161 (314)
T TIGR00465       136 LIAVEQDPTGEAMAIALAYAKAIGGG  161 (314)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence            43 56667888999999999999997

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.33  E-value=1.9e-09  Score=95.49  Aligned_cols=179  Identities=13%  Similarity=0.198  Sum_probs=109.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~   79 (297)
                      |-+..++|+|||+|.||+.+|..|+++|++|+++.|++.  +..           .+.|.... ...+.....+...++.
T Consensus         1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~   67 (313)
T PRK06249          1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSA   67 (313)
T ss_pred             CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcch
Confidence            545668999999999999999999999999999999863  222           22231100 0000011123344555


Q ss_pred             cccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEE-EeecC-----CCCCCC--
Q 022434           80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM--  150 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~--  150 (297)
                      ++...+|+||.|++...  ..+++..+.+.+.++++|++...++.. +.+.+.++. .+++ ++.++     .|..+.  
T Consensus        68 ~~~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~  144 (313)
T PRK06249         68 EDMPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHL  144 (313)
T ss_pred             hhcCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEEC
Confidence            55778999999998654  246777888888888888878888876 456555543 3433 33332     222100  


Q ss_pred             --ceEEEecCCCCc-----HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHH
Q 022434          151 --KLVEVIRGADTS-----DETFRATKALAERFGKTVVCSQDYAGFIVNRIL  195 (297)
Q Consensus       151 --~~vei~~~~~~~-----~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~  195 (297)
                        +.+.+-...+.+     .+..+.+..+|+..|..+....|....++..++
T Consensus       145 ~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~  196 (313)
T PRK06249        145 AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV  196 (313)
T ss_pred             CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence              011111111122     456677788888888887777776655444443

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.29  E-value=3e-10  Score=101.73  Aligned_cols=166  Identities=14%  Similarity=0.120  Sum_probs=109.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hh-hcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AV-GTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||+.+|..|+++| +|++|.++++..+...+           .+.... .. ......++..+++.++
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~~~l~~~i~~t~d~~~   73 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGNDVVLSDTLRATTDFAE   73 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCCcccCCCeEEECCHHH
Confidence            4579999999999999999999999 78999999987766532           221000 00 0112245667777765


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-------HHHhhhcCCCCeEEEeecCCCCCC----
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL----  149 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~----  149 (297)
                       ++++|+||.++|..  ....+++++.+.+++++++++.+.+++.       +.+.+.++. .++..  ...|-..    
T Consensus        74 a~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--l~GP~~a~ev~  148 (341)
T PRK12439         74 AANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--LAGPNIAREVA  148 (341)
T ss_pred             HHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--EECCCHHHHHH
Confidence             78999999999844  3667888998888888777777777764       344444432 12111  1122211    


Q ss_pred             --CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          150 --MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       150 --~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                        .+...++.+  .+++..+.+.++|..-+.++....|..|
T Consensus       149 ~g~~t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~g  187 (341)
T PRK12439        149 EGYAAAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVG  187 (341)
T ss_pred             cCCCeEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence              111122222  3677888888999888888888788765

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.29  E-value=1e-11  Score=109.27  Aligned_cols=122  Identities=21%  Similarity=0.305  Sum_probs=86.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCc
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      |+|||+|.||..+|..++..|+ +|+++|++++.++...-.+.+       ..     .......++..+++++++++||
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~-------~~-----~~~~~~~~I~~t~d~~~l~dAD   68 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQ-------AA-----PILGSDTKVTGTNDYEDIAGSD   68 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHH-------hh-----hhcCCCeEEEEcCCHHHhCCCC
Confidence            6899999999999999999887 999999998754322111111       11     0111224566667777899999


Q ss_pred             EEEEec--------------cccHHHHHHHHHHHHhhcCCCe-EEEecCCCCcHHHHhhhcCC-CCeEEEe
Q 022434           87 IIVEAI--------------VESEDVKKKLFSELDKITKASA-ILASNTSSISITRLASATSR-PCQVIGM  141 (297)
Q Consensus        87 ~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~-~~~~~g~  141 (297)
                      +||+++              +++..+++++++++.+.+++.. |+.+|++.+....+.+.... |.|++|+
T Consensus        69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            999866              6678889999999999997776 45677776666666655443 3456654

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.27  E-value=4.1e-10  Score=92.29  Aligned_cols=187  Identities=19%  Similarity=0.249  Sum_probs=125.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc----c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK----D   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~   81 (297)
                      ++|+.||+|.||..|+.+|.+.||+|+.||+|++..+.+           ++.|+             +.+++++    .
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~-----------~~~ga-------------~~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEEL-----------KDEGA-------------TGAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HhcCC-------------ccccCHHHHHHh
Confidence            479999999999999999999999999999999988877           55553             2233332    2


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC-CcH-HHHhhhcCCCCeEEEeecCCCCCCCc-------e
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS-ISI-TRLASATSRPCQVIGMHFMNPPPLMK-------L  152 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~-~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~-------~  152 (297)
                      +...-.|-.+||-. ++..+++.++.+.+..+-+|+....+ +-- ..-.+.+    .-.|+||++.- .++       .
T Consensus        57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l----~~kgi~flD~G-TSGG~~G~~~G  130 (300)
T COG1023          57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL----AEKGIHFLDVG-TSGGVWGAERG  130 (300)
T ss_pred             cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH----HhcCCeEEecc-CCCCchhhhcC
Confidence            44556778888854 24678899999888776655544333 321 2222222    12467887654 221       1


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeE---EEeccc-hh----hhHHHHHH---HHHHHHHHHHHcCCC--CHHHHHHH
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTV---VCSQDY-AG----FIVNRILM---PMINEAFFTLYTGVA--TKEDIDAG  219 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~---i~v~d~-~g----~i~nri~~---~~~~Ea~~l~~~g~~--~~~~id~a  219 (297)
                      --++.|  +++++++.+.++|+.+...+   .++++. .|    .+.|-|=.   ..+.|.+.++++.-.  |.+.+-+.
T Consensus       131 ~~lMiG--G~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v  208 (300)
T COG1023         131 YCLMIG--GDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV  208 (300)
T ss_pred             ceEEec--CcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            234555  69999999999999986532   355442 33    25555543   457899999998654  56778888


Q ss_pred             Hhhcc
Q 022434          220 MKLGT  224 (297)
Q Consensus       220 ~~~g~  224 (297)
                      ++.|.
T Consensus       209 W~hGS  213 (300)
T COG1023         209 WNHGS  213 (300)
T ss_pred             HhCcc
Confidence            87653

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.26  E-value=3e-10  Score=97.70  Aligned_cols=141  Identities=23%  Similarity=0.308  Sum_probs=100.5

Q ss_pred             HHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCcEEEEeccccHH
Q 022434           20 IAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESED   97 (297)
Q Consensus        20 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~~~   97 (297)
                      ||..|.++|  ++|+.+|++++.++.+           .+.|...           ...++.+.++++|+||.|+|-+. 
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~~DlvvlavP~~~-   57 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIID-----------EASTDIEAVEDADLVVLAVPVSA-   57 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSS-----------EEESHHHHGGCCSEEEE-S-HHH-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCee-----------eccCCHhHhcCCCEEEEcCCHHH-
Confidence            578899999  7899999999988776           5677654           23333556899999999998544 


Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCCCeEEEeecCCCCCC------------CceEEEecCCCCcH
Q 022434           98 VKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPL------------MKLVEVIRGADTSD  163 (297)
Q Consensus        98 ~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~------------~~~vei~~~~~~~~  163 (297)
                       ...++.++.+.++++++|...+|.-  ....+.+.+....++++.||+..|..            ...+-++++..+++
T Consensus        58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence             6688999999899999887655543  23556666555678999999887721            22466788888889


Q ss_pred             HHHHHHHHHHHHcCCeEEEec
Q 022434          164 ETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      +.++.+.++++.+|.+++.+.
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~~  157 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEMD  157 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE--
T ss_pred             HHHHHHHHHHHHCCCEEEEcC
Confidence            999999999999999998763

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.26  E-value=3.9e-10  Score=99.57  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=100.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|+++|++|+++++ ++..+..           .+.|.................++.++ .+.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKAL-----------RERGLVIRSDHGDAVVPGPVITDPEELTGP   68 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHH-----------HhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence            4799999999999999999999999999999 6666554           22231100000000001123445555 488


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEE-EeecCCCCCCCc-eEE------E
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFMNPPPLMK-LVE------V  155 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~~p~~~~~-~ve------i  155 (297)
                      +|+||.|++...  ...++.++.+...++++|++...++.. +.+.+.++. .+++ ++.++......+ .+.      +
T Consensus        69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~  145 (305)
T PRK12921         69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL  145 (305)
T ss_pred             CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence            999999998653  346777888877888877777777764 455555432 2333 333322111111 111      2


Q ss_pred             ecC--CCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          156 IRG--ADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       156 ~~~--~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      ..|  +....+..+.+..+|...|..+....|...
T Consensus       146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  180 (305)
T PRK12921        146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ  180 (305)
T ss_pred             EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence            222  223345666777788888876666666543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.26  E-value=3.3e-10  Score=101.01  Aligned_cols=168  Identities=15%  Similarity=0.202  Sum_probs=100.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c-C
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L-H   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-~   83 (297)
                      |+|+|||+|.||..+|..|+++|++|++|+|+++.++...+.         ..+. ..........++..+++.++ + .
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~-~~~~~~~~~~~i~~~~~~~~~~~~   70 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNL-KYLPTCHLPDNISVKSAIDEVLSD   70 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCc-ccCCCCcCCCCeEEeCCHHHHHhC
Confidence            379999999999999999999999999999998876655221         0010 00000111234556667665 4 5


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHh-hcCCCeEEEecCCCCcH-------HHHhhhcCCCCeEEEeecCCCCCC-----C
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL-----M  150 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~-----~  150 (297)
                      ++|+||.++|...  ..++++++.+ .+++++.+++.++++..       +.+.+.++.. ++.   .+..|..     .
T Consensus        71 ~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~---~~~Gp~~a~~~~~  144 (326)
T PRK14620         71 NATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIA---ILSGPSFAKEIAE  144 (326)
T ss_pred             CCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceE---eecCCcHHHHHHc
Confidence            8999999998654  5577888887 77777766656666643       3344444321 211   1112210     0


Q ss_pred             ce-EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhh
Q 022434          151 KL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFI  190 (297)
Q Consensus       151 ~~-vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i  190 (297)
                      +. ..+.. .+.+.+..+.+.++|..-+.++....|..|..
T Consensus       145 ~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~  184 (326)
T PRK14620        145 KLPCSIVL-AGQNETLGSSLISKLSNENLKIIYSQDIIGVQ  184 (326)
T ss_pred             CCCcEEEE-ecCCHHHHHHHHHHHCCCCeEEEecCcchhhh
Confidence            11 11111 12345556666666666666666667776643

>PTZ00117 malate dehydrogenase; Provisional

Probab=99.25  E-value=3.2e-11  Score=106.75  Aligned_cols=126  Identities=20%  Similarity=0.255  Sum_probs=89.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||..+|..++..| .+++++|++++.++...-...+        ..    .......++..++++++++
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~--------~~----~~~~~~~~i~~~~d~~~l~   72 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKH--------FS----TLVGSNINILGTNNYEDIK   72 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhh--------hc----cccCCCeEEEeCCCHHHhC
Confidence            469999999999999999999999 6999999998765422111110        00    0011123555567888899


Q ss_pred             CCcEEEEec--cccH------------HHHHHHHHHHHhhcCCC-eEEEecCCCCcHHHHhhhcCCC-CeEEEee
Q 022434           84 SADIIVEAI--VESE------------DVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGMH  142 (297)
Q Consensus        84 ~aD~Vi~~v--~e~~------------~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h  142 (297)
                      +||+||++.  |...            .+++++..++.+++++. .++++|++.+....+.+....| .+++|++
T Consensus        73 ~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         73 DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            999999998  5555            67888888999998766 4556787776666666655554 6777765

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=94.59  Aligned_cols=154  Identities=21%  Similarity=0.259  Sum_probs=100.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +|+++|+|+|+||.++|.+|+++||+|++-.++ +++++...+.+                     ..+++..+..++++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence            468999999999999999999999999999654 44454442221                     12234455555688


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC----------------cH-HHHhhhcCCCCeEE-EeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI----------------SI-TRLASATSRPCQVI-GMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~----------------~~-~~l~~~~~~~~~~~-g~h~~~  145 (297)
                      .+|+||.+||-..  ...+.+++..... +.|+++.|..+                +. +.+++.++.. +++ .+|-+.
T Consensus        60 ~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~  135 (211)
T COG2085          60 LADVVVLAVPFEA--IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP  135 (211)
T ss_pred             cCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence            9999999999544  5578888887766 56666555542                11 2344444433 322 222211


Q ss_pred             C------CCC-CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          146 P------PPL-MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       146 p------~~~-~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      +      +.. .+..-.+.|  -+.++.+.+.++.+.+|..++.++.
T Consensus       136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence            1      111 122334444  5788999999999999999998765

>PRK06223 malate dehydrogenase; Reviewed

Probab=99.24  E-value=4.5e-11  Score=105.65  Aligned_cols=112  Identities=18%  Similarity=0.262  Sum_probs=77.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++||+|||+|.||..+|..++..|+ +|+++|+++++++.....+.+.       ..     ......+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~-------~~-----~~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA-------AP-----VEGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh-------hh-----hcCCCcEEEeCCCHHHHC
Confidence            4699999999999999999999876 9999999988654321111111       00     011224566667787799


Q ss_pred             CCcEEEEec--------------cccHHHHHHHHHHHHhhcCCCe-EEEecCCCCcHHHH
Q 022434           84 SADIIVEAI--------------VESEDVKKKLFSELDKITKASA-ILASNTSSISITRL  128 (297)
Q Consensus        84 ~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~l  128 (297)
                      +||+||+++              .++..+++++++++.+.+++.. |+.+|++.+-...+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~  129 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA  129 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH
Confidence            999999986              2455778888899999886653 34455544433333

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.23  E-value=7.3e-10  Score=97.72  Aligned_cols=167  Identities=15%  Similarity=0.120  Sum_probs=99.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|||+|.||..+|..|+++|++|++++++++..+...           +.|... .. .....++...++.++++.+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~-~~-~~~~~~~~~~~~~~~~~~~   67 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGLRL-ED-GEITVPVLAADDPAELGPQ   67 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCCcc-cC-CceeecccCCCChhHcCCC
Confidence            4799999999999999999999999999999887665542           223210 00 0011112233444446889


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeec-----CCCCC---CC-ceEEE
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHF-----MNPPP---LM-KLVEV  155 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~-----~~p~~---~~-~~vei  155 (297)
                      |+||.+++...  ...++.++.+.+.++++|++...++.. +.+.+.+....-+.+..+     ..|-.   .. +.+.+
T Consensus        68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~i  145 (304)
T PRK06522         68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKI  145 (304)
T ss_pred             CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEE
Confidence            99999998653  457788888888888777777777764 455554432222222222     12211   11 11112


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      -. ...+.+..+.+.++|...|.......|...
T Consensus       146 g~-~~~~~~~~~~l~~~l~~~~~~~~~~~di~~  177 (304)
T PRK06522        146 GE-PDGESAAAEALADLLNAAGLDVEWSPDIRT  177 (304)
T ss_pred             eC-CCCCcHHHHHHHHHHHhcCCCCCCChHHHH
Confidence            11 112224466677778877766555555433

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.22  E-value=6.1e-11  Score=86.25  Aligned_cols=89  Identities=22%  Similarity=0.424  Sum_probs=65.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec-Cccc
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDG---LDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS-NLKD   81 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~   81 (297)
                      ||+|||+|+||.+|+..|.++|   ++|.++ +++++++++..+.          .+             +.+.. +..+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-------------~~~~~~~~~~   57 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-------------VQATADDNEE   57 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-------------TEEESEEHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-------------cccccCChHH
Confidence            7999999999999999999999   999966 9999988776321          11             12333 4444


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       ++.+|+||.|+|...  ..+++.++ ....++.+++|.+.
T Consensus        58 ~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   58 AAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEEST
T ss_pred             hhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeCC
Confidence             788999999998654  55788888 55566777776543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=99.19  E-value=5.5e-09  Score=86.45  Aligned_cols=158  Identities=20%  Similarity=0.225  Sum_probs=110.4

Q ss_pred             cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022434            6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV   65 (297)
Q Consensus         6 ~~I~viG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   65 (297)
                      ++|+|.|+|+.                    |+.||..|+.+||+|++.|+|.+-.+..      .+++..+.|.     
T Consensus         2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV-----   70 (340)
T COG4007           2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV-----   70 (340)
T ss_pred             ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc-----
Confidence            58999999863                    7889999999999999999987765542      4555566665     


Q ss_pred             hcccCCCcEE-ecCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH----HHhhhcCCCCeEEE
Q 022434           66 GTDAPRRLRC-TSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG  140 (297)
Q Consensus        66 ~~~~~~~i~~-~~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g  140 (297)
                              .+ ++|.+.++.+++.+...|-... .-.+.++|.++++++++|+ ||.+.++-    .+...+..+.+-+|
T Consensus        71 --------~vv~dD~eaa~~~Ei~VLFTPFGk~-T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVG  140 (340)
T COG4007          71 --------EVVSDDAEAAEHGEIHVLFTPFGKA-TFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVG  140 (340)
T ss_pred             --------EEecCchhhhhcceEEEEecccchh-hHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcC
Confidence                    34 4555669999999999886533 3367788999999999998 66665553    34444444444566


Q ss_pred             eecCCCCCCCc----eEEEecCCC------CcHHHHHHHHHHHHHcCCeEEEec
Q 022434          141 MHFMNPPPLMK----LVEVIRGAD------TSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       141 ~h~~~p~~~~~----~vei~~~~~------~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      +..+.|.-+-+    ..-++.+..      .+++.++++.++++..|+.++++.
T Consensus       141 vssmHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         141 VSSMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             ccccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence            66665542111    111232211      367889999999999999998763

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.16  E-value=1.5e-09  Score=96.50  Aligned_cols=161  Identities=20%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCChhhh--cccCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDG--------LDVWLVDT-----DPDALVRATKSISSSIQKFVSKGQLSQAVG--TDAPR   71 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~   71 (297)
                      ||+|||+|.+|.++|..|+.+|        |+|++|.+     +++-.+...            .........  -....
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in------------~~~~n~~ylpgi~Lp~   68 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN------------TTHENVKYLPGIKLPA   68 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH------------hcCCCccccCCCcCCC
Confidence            5899999999999999999999        99999998     433322221            111010000  11245


Q ss_pred             CcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH---------HHhhhcCCCCeEEEe
Q 022434           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT---------RLASATSRPCQVIGM  141 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---------~l~~~~~~~~~~~g~  141 (297)
                      ++.+++|+++ +++||+||.++|...  ...++.++.++++++.++++.+.++..+         .+.+.+..  ++   
T Consensus        69 ~i~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~---  141 (342)
T TIGR03376        69 NLVAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PC---  141 (342)
T ss_pred             CeEEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--Ce---
Confidence            6788889876 799999999999654  6678888988888888888887776543         22233322  11   


Q ss_pred             ecCCCCCCC-------ceEEEecCCCCc----HHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          142 HFMNPPPLM-------KLVEVIRGADTS----DETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       142 h~~~p~~~~-------~~vei~~~~~~~----~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      -.+..|...       +..-++.+  .+    .+..+.++.+|..--.+++...|..|
T Consensus       142 ~~lsGP~~A~Eva~~~pt~~~ia~--~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G  197 (342)
T TIGR03376       142 GVLSGANLANEVAKEKFSETTVGY--RDPADFDVDARVLKALFHRPYFRVNVVDDVAG  197 (342)
T ss_pred             EEeeCcchHHHHHcCCCceEEEEe--CCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence            112333211       11222333  34    78888888888765556666677655

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.15  E-value=3.3e-08  Score=86.97  Aligned_cols=235  Identities=14%  Similarity=0.104  Sum_probs=139.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|+|+|.||+.++..|+++|++|+++.|++. +++.           .+.|..-.............+.+.+....+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l-----------~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEAL-----------KKKGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHH-----------HhCCeEEecCCCccccccccccChhhcCCC
Confidence            5899999999999999999999999999998876 5554           344432111111111112233444557789


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHH-HhhhcCCCCeEEEeecCCCCCCCc---------eEEE
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR-LASATSRPCQVIGMHFMNPPPLMK---------LVEV  155 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~~~~~~~~~g~h~~~p~~~~~---------~vei  155 (297)
                      |+||.++....  ..+++..+.+.++++++|++...++...+ +....+....+.|+-+.......+         -..+
T Consensus        69 Dlviv~vKa~q--~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVKAYQ--LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEecccc--HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            99999996433  56788899999999998888888888754 555544332345554443222111         1122


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh-----------------------------hHHHHHHHHHHHHHHHH
Q 022434          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----------------------------IVNRILMPMINEAFFTL  206 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~-----------------------------i~nri~~~~~~Ea~~l~  206 (297)
                      -...+..++.++.+.+.|+..+....+..|.-..                             -...++...+.|+...+
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~  226 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA  226 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence            2223334567888888888888777665443221                             12223445567777776


Q ss_pred             HcCC--CCHHHHHHHHhhccCC--CchHHHHHHhhc-----hHHHHHHHHHHHhhcC
Q 022434          207 YTGV--ATKEDIDAGMKLGTNQ--PMGPLQLADFIG-----LDVCLSIMKVLHTGLG  254 (297)
Q Consensus       207 ~~g~--~~~~~id~a~~~g~g~--p~Gp~~~~D~~G-----l~~~~~~~~~~~~~~~  254 (297)
                      ...+  .+.+.++.........  +..|-.+.|...     +|.+...+-++.+..+
T Consensus       227 ~~~g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~G~vv~~a~~~g  283 (307)
T COG1893         227 RAEGVELPEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAINGAVVRLAKKHG  283 (307)
T ss_pred             HhccCCCCHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHhhHHHHHHHHhC
Confidence            6433  2444456555433222  446666666544     3444433444444433

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.12  E-value=2.7e-09  Score=95.59  Aligned_cols=168  Identities=18%  Similarity=0.180  Sum_probs=105.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCChhhhcccCCCcEE
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPDA-LVRATKSISSSIQKFVSK-GQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~   75 (297)
                      .++|+|||+|.||+++|..|+.+|       |+|.+|.++++. -+...+.+.+.    .+. ..+.   --....++..
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp---~~~Lp~ni~~   83 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLP---GIKLPDNIVA   83 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCC---CCcCCCceEE
Confidence            468999999999999999999998       899999999752 01111111110    000 0010   1123467888


Q ss_pred             ecCccc-cCCCcEEEEeccccHHHHHHHHHHHHh--hcCCCeEEEecCCCCcH--------H-HHhhhcCCCCeEEEeec
Q 022434           76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDK--ITKASAILASNTSSISI--------T-RLASATSRPCQVIGMHF  143 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~--~~~~~~ii~s~ts~~~~--------~-~l~~~~~~~~~~~g~h~  143 (297)
                      ++|+++ +++||+||.++|...  .++++.++.+  ..++++++++.+.++..        + .+.+.+..  ++.   .
T Consensus        84 tsdl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~---~  156 (365)
T PTZ00345         84 VSDLKEAVEDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCC---A  156 (365)
T ss_pred             ecCHHHHHhcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeE---E
Confidence            888876 899999999998544  6788888887  67777777777666543        2 22233322  221   1


Q ss_pred             CCCCCCC-------ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          144 MNPPPLM-------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       144 ~~p~~~~-------~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      +..|...       +..-++.+  .+++..+.++++|..=-.+++...|..|
T Consensus       157 LsGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G  206 (365)
T PTZ00345        157 LSGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG  206 (365)
T ss_pred             EECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence            2233211       11222333  4788888888888766666666677654

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.11  E-value=6.1e-09  Score=91.35  Aligned_cols=195  Identities=16%  Similarity=0.185  Sum_probs=128.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc---
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD---   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---   81 (297)
                      ...||+||+|.||..+|.+.+.+||.|.+|+|+.++.+.+.+          +.+         ...+|..+.++++   
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~----------~~~---------~~k~i~~~~sieefV~   63 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLA----------ERA---------KGKNIVPAYSIEEFVA   63 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHH----------hCc---------cCCCccccCcHHHHHH
Confidence            357999999999999999999999999999999999988732          111         1134555666664   


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC-C-cH-HHHhhhcCCCCeEEEeecCCCCC-CCceEEEe
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS-I-SI-TRLASATSRPCQVIGMHFMNPPP-LMKLVEVI  156 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~-~-~~-~~l~~~~~~~~~~~g~h~~~p~~-~~~~vei~  156 (297)
                       ++.---|+.+|.-. .....++.+|.+++.++-||+....+ . +. ....+.....-.|+|+-...... ......++
T Consensus        64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiM  142 (473)
T COG0362          64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIM  142 (473)
T ss_pred             HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcC
Confidence             45567788887554 22457788888888777666644333 2 22 22222223344677765432211 01124477


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCeE----E--Eec-cchhh----hHHHHHH---HHHHHHHHHHHc-CCCCHHHHHHHHh
Q 022434          157 RGADTSDETFRATKALAERFGKTV----V--CSQ-DYAGF----IVNRILM---PMINEAFFTLYT-GVATKEDIDAGMK  221 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~~----i--~v~-d~~g~----i~nri~~---~~~~Ea~~l~~~-g~~~~~~id~a~~  221 (297)
                      +|  +++++++.+.++|..+..+.    -  +++ +..|.    +.|-+=.   .++.|++.++.+ .+.+.++|-..+.
T Consensus       143 pG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~  220 (473)
T COG0362         143 PG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFE  220 (473)
T ss_pred             CC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            77  89999999999999886542    2  232 33342    4554433   578999999987 4467888877764

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=99.10  E-value=4.8e-10  Score=98.61  Aligned_cols=99  Identities=17%  Similarity=0.204  Sum_probs=67.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||..+|..++..|+ +|+++|++++..+ ...     ++. .+.+.     ......+++++++++++++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a-----~d~-~~~~~-----~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA-----LDM-YEASP-----VGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH-----Hhh-hhhhh-----ccCCCcEEEecCCHHHhCC
Confidence            489999999999999999999887 8999999766432 211     010 11111     1112356777888888999


Q ss_pred             CcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           85 ADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        85 aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ||+||.+++.              +..+.+++..++.+..+ +++++
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iI  115 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIV  115 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence            9999999972              33445556666777754 44443

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.02  E-value=1.9e-10  Score=99.97  Aligned_cols=78  Identities=29%  Similarity=0.528  Sum_probs=71.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL  263 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~  263 (297)
                      ..++++++.+++|||+.+++||+. ++.++|.+..+|+|||.   |||+|.|.+|++.++..|+.|..      |.|+.+
T Consensus       294 ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~------f~P~~~  367 (380)
T KOG1683|consen  294 EDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS------FEPCQL  367 (380)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc------CCHHHH
Confidence            458999999999999999999987 59999999999999996   99999999999999999999864      899999


Q ss_pred             HHHHHHcC
Q 022434          264 LVQYVDAG  271 (297)
Q Consensus       264 l~~~~~~g  271 (297)
                      |..+.++|
T Consensus       368 l~~~a~~~  375 (380)
T KOG1683|consen  368 LKDHAKSG  375 (380)
T ss_pred             HHHHHhhh
Confidence            99998874

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.00  E-value=8.5e-09  Score=91.66  Aligned_cols=112  Identities=17%  Similarity=0.226  Sum_probs=81.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.++|..|...|++|.+||++++.....                            +....++++ +++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            689999999999999999999999999999997532110                            013345555 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+..+.+++-+.++++++++..+-+.  ....+.+.+... -...++..|.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~  262 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE  262 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence            999999999988766666677777888898887444333  335677776532 2334555554

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.98  E-value=2.3e-08  Score=88.19  Aligned_cols=177  Identities=13%  Similarity=0.042  Sum_probs=104.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|||+|.||+-+|..|+++|++|++++|+++.++..++          +.|...........-++. ..+.+....+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g~~~~~~~~-~~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQGQASLYAIP-AETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCCcceeeccC-CCCccccccc
Confidence            58999999999999999999999999999998876665521          112110000000000111 1122235678


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecCC-----CCCCC--ceEEEec
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMN-----PPPLM--KLVEVIR  157 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~-----p~~~~--~~vei~~  157 (297)
                      |+||.|+....  ..+.+..+.+.+.++++|++...++.. +.+.+.+....-+.|..++.     |-.+.  ..-.+..
T Consensus        72 D~viv~vK~~~--~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~  149 (305)
T PRK05708         72 HRLLLACKAYD--AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWL  149 (305)
T ss_pred             CEEEEECCHHh--HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEE
Confidence            99999996432  346678888999999988888888886 45666554322233443332     21111  0111222


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHH
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILM  196 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~  196 (297)
                      |...+ +..+.+.++|...|....+..|..+.++..++.
T Consensus       150 G~~~~-~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~  187 (305)
T PRK05708        150 GDPRN-PTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL  187 (305)
T ss_pred             cCCCC-cchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence            32222 334566667777776666666666665655554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.96  E-value=3.6e-09  Score=91.44  Aligned_cols=96  Identities=17%  Similarity=0.330  Sum_probs=73.5

Q ss_pred             EEEECC-ChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-cc
Q 022434            8 MGVVGS-GQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-KD   81 (297)
Q Consensus         8 I~viG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   81 (297)
                      |+|||+ |.||..+|..|+..|    .+|+++|+++++++.....+++.....             ...+++.++|. ++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    799999999988777655544332211             12355667774 56


Q ss_pred             cCCCcEEEE--------------eccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 LHSADIIVE--------------AIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~~~aD~Vi~--------------~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++||+||+              .+.++..+++++.+++.+.+ ++++++
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i  116 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII  116 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence            999999999              55666778899999999998 455444

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.93  E-value=7.9e-08  Score=83.69  Aligned_cols=144  Identities=17%  Similarity=0.223  Sum_probs=88.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.||.++|.+|...|++|+++++.....+.+           .+.|.             .+. ++++ ++
T Consensus        16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A-----------~~~G~-------------~v~-sl~Eaak   70 (335)
T PRK13403         16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVA-----------KADGF-------------EVM-SVSEAVR   70 (335)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHH-----------HHcCC-------------EEC-CHHHHHh
Confidence            3789999999999999999999999999998764333222           22232             233 5555 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH--HHhhhcCCCCeEEEeecCCCCCCC-----------
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT--RLASATSRPCQVIGMHFMNPPPLM-----------  150 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~~~~~~~~g~h~~~p~~~~-----------  150 (297)
                      .||+|+.++|++.. +..+..++.+.+++++++..+. +..+.  .+..  +....++-+-|-.|-+..           
T Consensus        71 ~ADVV~llLPd~~t-~~V~~~eil~~MK~GaiL~f~h-gfni~~~~i~p--p~~vdv~mvaPKgpG~~vR~~y~~G~Gvp  146 (335)
T PRK13403         71 TAQVVQMLLPDEQQ-AHVYKAEVEENLREGQMLLFSH-GFNIHFGQINP--PSYVDVAMVAPKSPGHLVRRVFQEGNGVP  146 (335)
T ss_pred             cCCEEEEeCCChHH-HHHHHHHHHhcCCCCCEEEECC-CcceecCceeC--CCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence            99999999997543 4333356778888888776432 33321  1110  111223333333332211           


Q ss_pred             ceEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434          151 KLVEVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~  179 (297)
                      .++-|-..  .+-.+.+.+..+.+.+|..
T Consensus       147 ~l~av~qd--~sg~a~~~ala~a~~iG~~  173 (335)
T PRK13403        147 ALVAVHQD--ATGTALHVALAYAKGVGCT  173 (335)
T ss_pred             eEEEEEEC--CCCcHHHHHHHHHHHcCCC
Confidence            12333333  3445778888899999876

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.88  E-value=8.6e-08  Score=78.58  Aligned_cols=115  Identities=13%  Similarity=0.180  Sum_probs=79.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|+|||+ |.||+.++..|.++||+|++                                                 ++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~   31 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK   31 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence            48999999 99999999999999999861                                                 26


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc--e--EEEecCCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK--L--VEVIRGAD  160 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~--~--vei~~~~~  160 (297)
                      ||+||.|+|.+.  ..++++++.      .+++..+|.-.  .+.+.   ..+++|.||+..|....  +  .-++..+.
T Consensus        32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~   98 (197)
T PRK06444         32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFINDI   98 (197)
T ss_pred             CCEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEEECCC
Confidence            899999999654  335555543      24443333322  22222   24799999988764321  1  22233566


Q ss_pred             CcHHHHHHHHHHHHHcCCeEEEec
Q 022434          161 TSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      ++++.++.++++++  |.+++.+.
T Consensus        99 ~~~~~~~~~~~l~~--G~~~~~~t  120 (197)
T PRK06444         99 SRDNYLNEINEMFR--GYHFVEMT  120 (197)
T ss_pred             CCHHHHHHHHHHHc--CCEEEEeC
Confidence            78888999999998  77777663

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.87  E-value=2.6e-08  Score=77.73  Aligned_cols=88  Identities=19%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++           .+.|.             .+.+..+.++
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~Gf-------------~v~~~~eAv~   59 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADGF-------------EVMSVAEAVK   59 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCCC-------------eeccHHHHHh
Confidence            47899999999999999999999999999988776 34443           55564             3333344589


Q ss_pred             CCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s  118 (297)
                      .+|+|+..+|+..  ..+++ ++|.+.++++.++..
T Consensus        60 ~aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   60 KADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLVF   93 (165)
T ss_dssp             C-SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEEE
T ss_pred             hCCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEEe
Confidence            9999999999765  44666 779999999887764

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.85  E-value=3.5e-08  Score=76.89  Aligned_cols=104  Identities=21%  Similarity=0.321  Sum_probs=67.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      +||+|||+ |.+|..+|..|...++  +++++|+++++++.....+++......             ........+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-------------~~~~i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-------------SPVRITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-------------EEEEEEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-------------ccccccccccccc
Confidence            58999999 9999999999999885  799999998876655444443321110             0111234667789


Q ss_pred             CCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++||+||.+...              +..+.+++...+.+..+ +++++.-|...
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvtNPv  121 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVTNPV  121 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-SSSH
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeCCcH
Confidence            999999987732              12234455556777774 44444334333

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.83  E-value=7e-07  Score=76.27  Aligned_cols=129  Identities=19%  Similarity=0.287  Sum_probs=94.9

Q ss_pred             CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHH
Q 022434           29 LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELD  107 (297)
Q Consensus        29 ~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~  107 (297)
                      ++|++++|++++++.+.+          +.|.             ..+.+.++ ++++|+||.|++ +. ....++.++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~----------~~g~-------------~~~~~~~e~~~~aDiIiLaVk-P~-~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAK----------ELGI-------------VASSDAQEAVKEADVVFLAVK-PQ-DLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHH----------HcCc-------------EEeCChHHHHhhCCEEEEEeC-HH-HHHHHHHHHh
Confidence            689999999987765411          1121             34555555 688999999998 33 3567788888


Q ss_pred             hhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceE-EEecCCCCcHHHHHHHHHHHHHcCCeEEE
Q 022434          108 KITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       108 ~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ei~~~~~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      +.+.++.+|+|...+++++.+.+.++...+++.+.|..|..+...+ -+..+...+++..+.++.+|..+|...++
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v  140 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL  140 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            7666778999999999999998888654567777776665444433 34566667888899999999999987755

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK07574 formate dehydrogenase; Provisional

Probab=98.83  E-value=1.2e-07  Score=85.53  Aligned_cols=115  Identities=13%  Similarity=0.101  Sum_probs=79.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||.|.||+.+|..|...|.+|..||++....+..           .+.|             +....++++ ++.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-----------QELG-------------LTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-----------hhcC-------------ceecCCHHHHhhc
Confidence            689999999999999999999999999999986322211           1112             133456666 799


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-..++++++++ |++.-.+   ..+.+.+... -.-.++..|.
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~  312 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALESGHLAGYAGDVWF  312 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHHhCCccEEEEecCC
Confidence            999999999888765544455666788888877 5554333   5676766432 2334455444

>PLN03139 formate dehydrogenase; Provisional

Probab=98.83  E-value=1.3e-07  Score=85.36  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=81.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.||..+|..|...|.+|..||++....+..           .+.|.             ....++++ ++
T Consensus       199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~g~-------------~~~~~l~ell~  254 (386)
T PLN03139        199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KETGA-------------KFEEDLDAMLP  254 (386)
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhcCc-------------eecCCHHHHHh
Confidence            3689999999999999999999999999999875322211           11121             23456776 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-+++-..++++++++ |++.-.+   +.+.+.+... ..-.++..|.
T Consensus       255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~  319 (386)
T PLN03139        255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWY  319 (386)
T ss_pred             hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCC
Confidence            9999999999888866655556677788888877 5554333   5677776432 2334555554

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.82  E-value=8.7e-08  Score=85.41  Aligned_cols=114  Identities=19%  Similarity=0.281  Sum_probs=79.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..|...|++|.+||+++.... .           .+.|.             .. .++++ ++
T Consensus       150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-----------~~~~~-------------~~-~~l~ell~  203 (333)
T PRK13243        150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-E-----------KELGA-------------EY-RPLEELLR  203 (333)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-H-----------HHcCC-------------Ee-cCHHHHHh
Confidence            37899999999999999999999999999999865321 1           11121             22 35555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-+.++++++++ |++.-.+   ..+.+.+... -...++..|.
T Consensus       204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~  268 (333)
T PRK13243        204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALKEGWIAGAGLDVFE  268 (333)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHHcCCeEEEEeccCC
Confidence            9999999999888766555556667788888877 5544332   5677766432 2234445443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.80  E-value=4.5e-08  Score=85.84  Aligned_cols=111  Identities=12%  Similarity=0.178  Sum_probs=76.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.||+.+|..+...|++|.+||++...                 .+..            ....++++ ++
T Consensus       122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~~------------~~~~~l~ell~  172 (303)
T PRK06436        122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGIS------------SIYMEPEDIMK  172 (303)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCcc------------cccCCHHHHHh
Confidence            378999999999999999888889999999987421                 1110            11235566 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-..++++++++ |++.-+   ...+.+.+... ....++..|.
T Consensus       173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~  237 (303)
T PRK06436        173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWW  237 (303)
T ss_pred             hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCC
Confidence            9999999999888755544455556678888777 555433   35677766532 3345555543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.77  E-value=4.4e-08  Score=77.27  Aligned_cols=114  Identities=21%  Similarity=0.253  Sum_probs=76.8

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCCcEEecCc-cccCCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAVGTDAPRRLRCTSNL-KDLHSA   85 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~-~~~~~a   85 (297)
                      |+|+|+|.||+.+|..|+++|++|+++++++ .++..           .+.|.. +....+..........+. +..+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAI-----------KEQGLTITGPDGDETVQPPIVISAPSADAGPY   68 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHH-----------HHHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhh-----------hheeEEEEecccceecccccccCcchhccCCC
Confidence            7899999999999999999999999999998 66654           233321 100000111111112222 246789


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCC
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRP  135 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~  135 (297)
                      |+||.|+....  ...++..+.+.+.+++.|++...++.. +.+.+..+.+
T Consensus        69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~  117 (151)
T PF02558_consen   69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP  117 (151)
T ss_dssp             SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS
T ss_pred             cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC
Confidence            99999997544  346778899999999888888888886 5566665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.77  E-value=4.3e-08  Score=86.56  Aligned_cols=98  Identities=17%  Similarity=0.271  Sum_probs=66.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|+.+|..|+..|  ++|+++|+++++++.....+.+....   .+.         ... ....++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~---~~~---------~~~-i~~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF---LPS---------PVK-IKAGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc---cCC---------CeE-EEcCCHHHhC
Confidence            48999999999999999999999  68999999998876654444332110   000         001 1235566789


Q ss_pred             CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||+||.+....              ..+.+++..++.++++ +++++
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi  114 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL  114 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            999999988541              2234455566777765 55444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.70  E-value=1.6e-07  Score=82.79  Aligned_cols=114  Identities=14%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.||..+|..|...|++|.+||++++.....                          .......++++ ++
T Consensus       136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~  189 (312)
T PRK15469        136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLS  189 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHh
Confidence            3789999999999999999999999999999876421100                          00001234555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+-++.-+.++++++++ |++.   +.-+.+.+.+... .+-.++..|.
T Consensus       190 ~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalDVf~  254 (312)
T PRK15469        190 QTRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLDVFS  254 (312)
T ss_pred             cCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence            9999999999988866655556666788888777 5543   2335777776543 2334555444

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.67  E-value=1.6e-07  Score=83.06  Aligned_cols=77  Identities=19%  Similarity=0.367  Sum_probs=55.9

Q ss_pred             CCCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            2 EEKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         2 ~~~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ...-+||+|||+|.+|..+|..++..|.  ++.++|+++++++.....+++....+             ....+ .++++
T Consensus         3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i-~~~~~   68 (315)
T PRK00066          3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKI-YAGDY   68 (315)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEE-EeCCH
Confidence            3445799999999999999999999997  89999999887765544433322100             00122 24667


Q ss_pred             cccCCCcEEEEec
Q 022434           80 KDLHSADIIVEAI   92 (297)
Q Consensus        80 ~~~~~aD~Vi~~v   92 (297)
                      +++++||+||.+.
T Consensus        69 ~~~~~adivIita   81 (315)
T PRK00066         69 SDCKDADLVVITA   81 (315)
T ss_pred             HHhCCCCEEEEec
Confidence            7899999999876

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.64  E-value=1.4e-07  Score=83.28  Aligned_cols=97  Identities=18%  Similarity=0.244  Sum_probs=64.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|.++|..|+..|  .+|.++|+++++++.....+.+.       ..+.       ......++++++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~-------~~~~i~~~d~~~l~   66 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFV-------KPVRIYAGDYADCK   66 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------cccc-------CCeEEeeCCHHHhC
Confidence            37999999999999999999999  58999999987765321111111       0000       01112356777799


Q ss_pred             CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEE
Q 022434           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii  116 (297)
                      +||+||.+++..              ..+.+++..+|.++.+...++
T Consensus        67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii  113 (308)
T cd05292          67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL  113 (308)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            999999998652              223445556677776554433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.63  E-value=3.2e-07  Score=81.83  Aligned_cols=101  Identities=22%  Similarity=0.278  Sum_probs=69.1

Q ss_pred             CcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|.||..+|..|+ ..|.+|..||+++.....              .+             +...+++++ +
T Consensus       146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell  198 (332)
T PRK08605        146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAV  198 (332)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHH
Confidence            368999999999999999994 468899999988643210              00             123446666 7


Q ss_pred             CCCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEecCCCCcH--HHHhhhcC
Q 022434           83 HSADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISI--TRLASATS  133 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  133 (297)
                      ++||+|+.++|.....+. ++ .+.-+.++++++++..+.+..+  ..+.+.+.
T Consensus       199 ~~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  251 (332)
T PRK08605        199 EGADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD  251 (332)
T ss_pred             HhCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            899999999998776443 33 3455667888877743333332  45666654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.62  E-value=4.1e-08  Score=81.03  Aligned_cols=105  Identities=23%  Similarity=0.313  Sum_probs=67.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccC----CCcEEe
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATKSISSSIQKFVSKGQLSQAVGTDAP----RRLRCT   76 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~i~~~   76 (297)
                      ..+|+|+|+|.||+.+|..|+.+|+ +++++|.+   ++.+.+-. ...      .+.|....+.....+    ..+.+.
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~------~~iG~~Ka~~~~~~l~~inp~~~i~   93 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKA------SQVGEPKTEALKENISEINPYTEIE   93 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CCh------hhCCCHHHHHHHHHHHHHCCCCEEE
Confidence            3689999999999999999999999 69999998   55443310 000      001110000001111    111111


Q ss_pred             --------cCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           77 --------SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        77 --------~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                              ++.++ ++++|+||+| .++.+.|..++.++....+...++.
T Consensus        94 ~~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        94 AYDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             EeeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                    11223 6789999999 6888889999998888777666665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK15076 alpha-galactosidase; Provisional

Probab=98.60  E-value=5.2e-07  Score=83.03  Aligned_cols=77  Identities=19%  Similarity=0.296  Sum_probs=55.4

Q ss_pred             cEEEEECCChhHHHHHH--HHH----HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQMGSGIAQ--LGV----MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|.||...+.  .++    ..|.+|+++|+++++++.....+++.+...   +         ...+++.++|.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~   69 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR   69 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence            58999999999966655  333    356799999999999886655555544322   1         12456778884


Q ss_pred             -cccCCCcEEEEeccc
Q 022434           80 -KDLHSADIIVEAIVE   94 (297)
Q Consensus        80 -~~~~~aD~Vi~~v~e   94 (297)
                       +++++||+||+++..
T Consensus        70 ~eal~dADfVv~ti~v   85 (431)
T PRK15076         70 REALQGADYVINAIQV   85 (431)
T ss_pred             HHHhCCCCEEeEeeee
Confidence             559999999998743

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.59  E-value=2.4e-06  Score=73.84  Aligned_cols=152  Identities=15%  Similarity=0.114  Sum_probs=103.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc--c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD--L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~   82 (297)
                      ..+|+|||.|.||.-+|..|.++||.|...||++-  +.+.++          -|.             ...+++.+  -
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~----------yg~-------------~~ft~lhdlce  106 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEK----------YGS-------------AKFTLLHDLCE  106 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHH----------hcc-------------cccccHHHHHh
Confidence            35799999999999999999999999999999872  222111          121             12233333  2


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCC-CC------ce
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPP-LM------KL  152 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~-~~------~~  152 (297)
                      +..|+|+.|+.  ..-...+++..... .+.++++...+|.-..  +.+...++....++..|++..|. ..      |+
T Consensus       107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf  184 (480)
T KOG2380|consen  107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF  184 (480)
T ss_pred             cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence            56899999984  22234555555444 6778888866665433  45666777667899999988774 21      23


Q ss_pred             EEE--ecC-CCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          153 VEV--IRG-ADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       153 vei--~~~-~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      |-+  -.+ ....++-+|.+.+++...|.+.+.+
T Consensus       185 VydkvRig~~~~r~ercE~fleIf~cegckmVem  218 (480)
T KOG2380|consen  185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEM  218 (480)
T ss_pred             EEEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence            321  112 2234788999999999999988865

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.58  E-value=9.4e-07  Score=83.58  Aligned_cols=114  Identities=22%  Similarity=0.242  Sum_probs=77.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||.|.||+.+|..|...|.+|..||+.... +..           .+.|.             ...+++++ ++.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g~-------------~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERA-----------EQLGV-------------ELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcCC-------------EEcCCHHHHHhh
Confidence            68999999999999999999999999999985321 111           11221             33456666 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++ |++.-.   ...+.+.+... -...++..|.
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~  257 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALEEGHVRAAALDVFE  257 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHHcCCeeEEEEecCC
Confidence            999999999887654433344455678888776 554433   35677776532 2334555443

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.58  E-value=1.3e-07  Score=74.86  Aligned_cols=74  Identities=16%  Similarity=0.210  Sum_probs=53.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++|+|+|+|.||.+++..|.+.| ++|+++|+++++.+...+.+..       .. .          . ....+.++ +
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~-~~~~~~~~~~   79 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------A-IAYLDLEELL   79 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------c-eeecchhhcc
Confidence            478999999999999999999996 8899999998877665322110       00 0          0 11233333 7


Q ss_pred             CCCcEEEEeccccHH
Q 022434           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      +++|+||.|+|....
T Consensus        80 ~~~Dvvi~~~~~~~~   94 (155)
T cd01065          80 AEADLIINTTPVGMK   94 (155)
T ss_pred             ccCCEEEeCcCCCCC
Confidence            899999999998763

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.57  E-value=6.2e-07  Score=79.14  Aligned_cols=98  Identities=18%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      -+||+|||+|.+|..+|..++..|.  ++.++|+++++++.....+.+...       +      .....+..+.+++++
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-------~------~~~~~v~~~~dy~~~   69 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-------F------LKNPKIEADKDYSVT   69 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-------c------CCCCEEEECCCHHHh
Confidence            3599999999999999999999885  799999998766544333322210       0      001245556788889


Q ss_pred             CCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeE
Q 022434           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAI  115 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~i  115 (297)
                      ++||+||.+...              +..+.+++...+.++++...+
T Consensus        70 ~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~v  116 (312)
T cd05293          70 ANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL  116 (312)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            999999986532              112344455567777654443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=1.5e-06  Score=75.45  Aligned_cols=196  Identities=16%  Similarity=0.192  Sum_probs=124.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc--
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD--   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   81 (297)
                      +...|++||++.||..++.+.+.+||.|.+|+|+.++.+.+.+.-        .+|           ..|....++++  
T Consensus         5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flane--------ak~-----------~~i~ga~S~ed~v   65 (487)
T KOG2653|consen    5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANE--------AKG-----------TKIIGAYSLEDFV   65 (487)
T ss_pred             cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHh--------hcC-----------CcccCCCCHHHHH
Confidence            357899999999999999999999999999999999988774321        111           11233455554  


Q ss_pred             --cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCe-EEEecCCCCcH-H-HHhhhcCCCCeEEEeecCCCCCCCc-eEEE
Q 022434           82 --LHSADIIVEAIVESEDVKKKLFSELDKITKASA-ILASNTSSISI-T-RLASATSRPCQVIGMHFMNPPPLMK-LVEV  155 (297)
Q Consensus        82 --~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~-~-~l~~~~~~~~~~~g~h~~~p~~~~~-~vei  155 (297)
                        ++.--.||..+.-... ....+++|.+++..+- ||.-..|.++- + ...+.....--|+|.-......-.+ ...+
T Consensus        66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl  144 (487)
T KOG2653|consen   66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL  144 (487)
T ss_pred             HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc
Confidence              4667777777754433 4567778888776654 55433444443 2 2222223334466654432211111 2346


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCe-----E--EEeccc-hhh----hHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHH
Q 022434          156 IRGADTSDETFRATKALAERFGKT-----V--VCSQDY-AGF----IVNRIL---MPMINEAFFTLYT-GVATKEDIDAG  219 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~-----~--i~v~d~-~g~----i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a  219 (297)
                      ++|  +++++...++++|..+..+     |  .++++. .|.    +.|-|=   ..++.||+.++.. ++.+-++|-.+
T Consensus       145 MpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~v  222 (487)
T KOG2653|consen  145 MPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEV  222 (487)
T ss_pred             CCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            777  8999999999999887443     2  234432 332    344332   3678999999987 66777777666


Q ss_pred             Hh
Q 022434          220 MK  221 (297)
Q Consensus       220 ~~  221 (297)
                      +.
T Consensus       223 F~  224 (487)
T KOG2653|consen  223 FD  224 (487)
T ss_pred             HH
Confidence            54

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.57  E-value=2.2e-07  Score=75.50  Aligned_cols=115  Identities=21%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.+|+.+|..+..-|.+|+.||++.......           .+.+              ....++++ ++
T Consensus        36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-----------~~~~--------------~~~~~l~ell~   90 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-----------DEFG--------------VEYVSLDELLA   90 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-----------HHTT--------------EEESSHHHHHH
T ss_pred             CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-----------cccc--------------ceeeehhhhcc
Confidence            4789999999999999999999999999999998754421           1112              13446666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|-..+.+.-+-++.-..++++++++ |++.-.   -+.+.+.+... ..-.++..+.
T Consensus        91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  155 (178)
T PF02826_consen   91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALESGKIAGAALDVFE  155 (178)
T ss_dssp             H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred             hhhhhhhhhccccccceeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence            9999999999665433323334445678888887 555333   35677766433 2334555554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.54  E-value=3.1e-07  Score=80.77  Aligned_cols=96  Identities=20%  Similarity=0.321  Sum_probs=66.2

Q ss_pred             EEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |+|||+|.+|.++|..++..|  .+++++|+++++++.....+++....+             ...++..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence            689999999999999999999  689999999988776554444332110             11233445667789999


Q ss_pred             cEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           86 DIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        86 D~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      |+||.+...              +..+.+++..++.+.+ ++++++
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi  112 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL  112 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            999998853              1223445555677777 455444

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02602 lactate dehydrogenase

Probab=98.53  E-value=5.8e-07  Score=80.31  Aligned_cols=96  Identities=22%  Similarity=0.321  Sum_probs=63.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|..+|..++..|.  ++.++|+++++++.....+.+...      ..      .. .++....++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~------~~------~~-~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA------FL------PR-TKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh------cC------CC-CEEEeCCCHHHhC
Confidence            599999999999999999998886  799999998776554333333211      00      00 1333345778899


Q ss_pred             CCcEEEEeccc-------c-------HHHHHHHHHHHHhhcCCCe
Q 022434           84 SADIIVEAIVE-------S-------EDVKKKLFSELDKITKASA  114 (297)
Q Consensus        84 ~aD~Vi~~v~e-------~-------~~~k~~~~~~l~~~~~~~~  114 (297)
                      +||+||.+.-.       .       ..+.+++...+.++++...
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i  149 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI  149 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            99999998522       1       1233445556777665444

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.53  E-value=1.6e-06  Score=82.00  Aligned_cols=114  Identities=21%  Similarity=0.214  Sum_probs=78.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|.+||++... +..           .+.|.             ... ++++ ++
T Consensus       140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g~-------------~~~-~l~ell~  193 (526)
T PRK13581        140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLGV-------------ELV-SLDELLA  193 (526)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcCC-------------EEE-cHHHHHh
Confidence            368999999999999999999999999999986431 111           11221             233 5665 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-.+.-+.++++++++ |++.-   ....+.+.+... ..-.++..|.
T Consensus       194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~  258 (526)
T PRK13581        194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVAGAALDVFE  258 (526)
T ss_pred             hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCeeEEEEecCC
Confidence            9999999999887755444355666788888777 55433   335677776432 2334555543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.48  E-value=9.2e-07  Score=78.23  Aligned_cols=114  Identities=21%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|||||+|.+|+.+|..+..-|.+|..||+ .+...+..             .+             .....++++ +
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL  195 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELL  195 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHH
Confidence            36899999999999999999999999999999 33322111             11             123466777 8


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +.||+|...+|...+.+.-+-++.-..++++++++ |++.-   ....+.+.+... -+-.++..|.
T Consensus       196 ~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~  261 (324)
T COG0111         196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFE  261 (324)
T ss_pred             hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence            99999999999888744433344455678888666 76643   335677777543 2334555554

>PLN02928 oxidoreductase family protein

Probab=98.44  E-value=3.6e-06  Score=75.44  Aligned_cols=126  Identities=13%  Similarity=0.090  Sum_probs=77.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|++||++.......            ..+ +................++++ ++.
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPED------------GLL-IPNGDVDDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhh------------hhc-cccccccccccccCcccCHHHHHhh
Confidence            689999999999999999999999999999974321110            000 000000000000001235555 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-++.-..++++++++ |++.   +.-+.+.+.+... ....++..|.
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~~g~i~gAaLDV~~  290 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALESGHLGGLAIDVAW  290 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence            999999999877654433345556678888887 5543   3335677777543 2334556554

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.42  E-value=1.2e-06  Score=77.43  Aligned_cols=107  Identities=18%  Similarity=0.302  Sum_probs=67.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLD--VWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~--V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||+|+|+ |.+|..++..|+..|+.  |+++|+++  ++++.....+.+   .+...+         ...++..+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d---~~~~~~---------~~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYD---ALAAAG---------IDAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhh---chhccC---------CCcEEEECCCHH
Confidence            58999998 99999999999999974  99999965  333322111111   111111         112455566777


Q ss_pred             ccCCCcEEEEeccc------c-H-------HHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           81 DLHSADIIVEAIVE------S-E-------DVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++++||+||.++..      + .       .+.+++...|.+.++ +.+++..++..++
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~  126 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDV  126 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHH
Confidence            79999999999841      1 1       234455556777765 5555556665554

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.42  E-value=1.6e-06  Score=68.25  Aligned_cols=88  Identities=31%  Similarity=0.356  Sum_probs=56.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-ccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (297)
                      -+++.|+|.|..|+++|..|...|.+|+++|++|-++-++           ...|.             .+. +.+ .++
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------~~dGf-------------~v~-~~~~a~~   77 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------AMDGF-------------EVM-TLEEALR   77 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------HHTT--------------EEE--HHHHTT
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------hhcCc-------------Eec-CHHHHHh
Confidence            3689999999999999999999999999999999765443           33443             333 344 488


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .+|++|.+......+..+.+.    .+++++|+++.++
T Consensus        78 ~adi~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh  111 (162)
T PF00670_consen   78 DADIFVTATGNKDVITGEHFR----QMKDGAILANAGH  111 (162)
T ss_dssp             T-SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSS
T ss_pred             hCCEEEECCCCccccCHHHHH----HhcCCeEEeccCc
Confidence            999999987654333334443    4678899885443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.41  E-value=1.5e-06  Score=75.93  Aligned_cols=92  Identities=18%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..|...|.+|++++|++++.+.+           .+.|..          . ....++++ ++
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-----------~~~g~~----------~-~~~~~l~~~l~  208 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-----------TEMGLI----------P-FPLNKLEEKVA  208 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHCCCe----------e-ecHHHHHHHhc
Confidence            3689999999999999999999999999999998765443           222320          0 01123333 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++|+||.++|...- .    ++..+.++++++++...|..
T Consensus       209 ~aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       209 EIDIVINTIPALVL-T----ADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             cCCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCcCC
Confidence            99999999986431 1    22334456777776444433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.40  E-value=3.5e-06  Score=74.49  Aligned_cols=110  Identities=24%  Similarity=0.276  Sum_probs=77.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||.|.+|+.+|..+..-|.+|..||+.....               +.+             +. ..++++ ++
T Consensus       145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~  195 (311)
T PRK08410        145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLK  195 (311)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhh
Confidence            3789999999999999999999999999999864210               001             11 235666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|-..+.+.-+-++.-..++++++++ |++.-   ....+.+.+... -. .++..|.
T Consensus       196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~  259 (311)
T PRK08410        196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVLE  259 (311)
T ss_pred             cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence            9999999999877644433344556678888887 66533   335777777543 33 5666664

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.35  E-value=1.3e-06  Score=78.80  Aligned_cols=110  Identities=19%  Similarity=0.184  Sum_probs=71.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||+|.||+.+|..+...|++|.+||+.....+                +.             ....++++ ++
T Consensus       116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~-------------~~~~~l~ell~  166 (381)
T PRK00257        116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD-------------GDFVSLERILE  166 (381)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC-------------ccccCHHHHHh
Confidence            36899999999999999999999999999998643110                00             01235666 68


Q ss_pred             CCcEEEEeccccHH---HHHHHH-HHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecC
Q 022434           84 SADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      .||+|+.++|-..+   ....++ ++.-..++++++++ |++.-+   ...+.+.+... ....++..|
T Consensus       167 ~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~  234 (381)
T PRK00257        167 ECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALLSGEDLDAVLDVW  234 (381)
T ss_pred             hCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence            99999999996542   122233 23445578888877 555433   35666665332 234455554

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.35  E-value=2e-06  Score=75.74  Aligned_cols=74  Identities=23%  Similarity=0.408  Sum_probs=51.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ||+|||+|.+|..+|..|+..|.  +++++|+++++++.....+.+..       .+..    ...-++. +.+++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~-------~~~~----~~~~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT-------ALTY----STNTKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh-------ccCC----CCCEEEE-ECCHHHhCC
Confidence            69999999999999999999886  79999999876654322222211       0000    0001222 467888999


Q ss_pred             CcEEEEec
Q 022434           85 ADIIVEAI   92 (297)
Q Consensus        85 aD~Vi~~v   92 (297)
                      ||+||.+.
T Consensus        69 aDivvita   76 (307)
T cd05290          69 ADIIVITA   76 (307)
T ss_pred             CCEEEECC
Confidence            99999876

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05442 malate dehydrogenase; Provisional

Probab=98.35  E-value=2.7e-06  Score=75.40  Aligned_cols=108  Identities=11%  Similarity=0.075  Sum_probs=66.7

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCc
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL   73 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i   73 (297)
                      +.+||+|||+ |.+|..+|..|+..|.       +++++|++++  +++.....+.+...              ....++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~   68 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGV   68 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCc
Confidence            4569999998 9999999999988775       7999999643  23322212221110              001112


Q ss_pred             EE-ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           74 RC-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        74 ~~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .. ..+++++++||+||.+..-              +..+.+++..+|.++.+++++++..|....+
T Consensus        69 ~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv  135 (326)
T PRK05442         69 VITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT  135 (326)
T ss_pred             EEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence            22 4566789999999986531              1233445555677777667766645544433

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.33  E-value=6.4e-06  Score=75.48  Aligned_cols=111  Identities=25%  Similarity=0.347  Sum_probs=76.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||.|.+|+.+|..+..-|.+|..||+++...                .+            ......++++ ++
T Consensus       151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~  202 (409)
T PRK11790        151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLA  202 (409)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHh
Confidence            3689999999999999999999999999999864210                00            1123446776 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      .||+|+.++|-..+.+.-+-++.-..++++++++ |++.-   ....+.+.+... -.-.++..|
T Consensus       203 ~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDVf  266 (409)
T PRK11790        203 QSDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALKSGHLAGAAIDVF  266 (409)
T ss_pred             hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHcCCceEEEEcCC
Confidence            9999999999877654434344556678888877 66533   335677766432 233445533

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=98.33  E-value=2e-05  Score=68.97  Aligned_cols=165  Identities=16%  Similarity=0.104  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCccccCCCcEEEEecc
Q 022434           15 QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNLKDLHSADIIVEAIV   93 (297)
Q Consensus        15 ~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~   93 (297)
                      .||+.+|..|+++|++|++++|+ +..+..           .+.|..-. .........+..+++++....+|+||.|++
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i-----------~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK   68 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEAL-----------NQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK   68 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHH-----------HHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence            37999999999999999999997 444443           23332100 000000012334455566778999999998


Q ss_pred             ccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecC-----CCCCCCc--eEEEecC-CCCcHH
Q 022434           94 ESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFM-----NPPPLMK--LVEVIRG-ADTSDE  164 (297)
Q Consensus        94 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~-----~p~~~~~--~vei~~~-~~~~~~  164 (297)
                      ...  ...++..+.+.+.++++|++...++.. +.+.+.++.+.-+.|+.++     .|-.+..  .-.+..| .....+
T Consensus        69 s~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~  146 (293)
T TIGR00745        69 AYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENE  146 (293)
T ss_pred             chh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchH
Confidence            643  356778888888888888888888865 4455544332222222222     2211000  0011112 111224


Q ss_pred             HHHHHHHHHHHcCCeEEEeccchhhhHHH
Q 022434          165 TFRATKALAERFGKTVVCSQDYAGFIVNR  193 (297)
Q Consensus       165 ~~~~~~~ll~~lg~~~i~v~d~~g~i~nr  193 (297)
                      ..+.+.++|...|.......|....++..
T Consensus       147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~K  175 (293)
T TIGR00745       147 AVEALAELLNEAGIPAELHGDILAAIWKK  175 (293)
T ss_pred             HHHHHHHHHHhCCCCCEecchHHHHHHHH
Confidence            55667777777777666666654443333

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.30  E-value=1.7e-06  Score=75.08  Aligned_cols=70  Identities=21%  Similarity=0.204  Sum_probs=53.5

Q ss_pred             CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|+|||.| .||.+||..|.++|+.|++|++....++.                                     .++
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e-------------------------------------~~~  201 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKA-------------------------------------LCR  201 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHH-------------------------------------HHh
Confidence            4789999996 99999999999999999999865432211                                     146


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.+++....+...+       ++++++++.
T Consensus       202 ~ADIVIsavg~~~~v~~~~-------ik~GaiVID  229 (301)
T PRK14194        202 QADIVVAAVGRPRLIDADW-------LKPGAVVID  229 (301)
T ss_pred             cCCEEEEecCChhcccHhh-------ccCCcEEEE
Confidence            7999999998765544333       567777664

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.29  E-value=3.1e-06  Score=73.85  Aligned_cols=104  Identities=23%  Similarity=0.383  Sum_probs=64.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe--cCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT--SNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~~   81 (297)
                      +||+|||+|.+|.++|..|+..++  ++.++|+++++++.....+.+...              -........  .++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~--------------~~~~~~~i~~~~~y~~   66 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA--------------PLGSDVKITGDGDYED   66 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch--------------hccCceEEecCCChhh
Confidence            489999999999999999977664  899999996654432212111100              011112233  44788


Q ss_pred             cCCCcEEEEec--cc------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 LHSADIIVEAI--VE------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++|+|+.+.  |.            +..+.+.+..++.+.++ +.++...|....
T Consensus        67 ~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD  122 (313)
T COG0039          67 LKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVD  122 (313)
T ss_pred             hcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHH
Confidence            99999999887  22            22345555566777776 554443444333

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.25  E-value=1.2e-05  Score=71.29  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=76.1

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|||||.|.+|..+|..+. .-|.+|..||+.......            .+.+.             .. .++++ ++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~------------~~~~~-------------~~-~~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE------------ERFNA-------------RY-CDLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH------------HhcCc-------------Ee-cCHHHHHH
Confidence            78999999999999999987 678899999986421110            01111             22 35666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|-..+.+.-+-++.-..++++++++ |++.-   .-+.+.+.+... ..-.++..|.
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~  264 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQKGEIHAAGLDVFE  264 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence            9999999999888754444345556678888887 66543   336777777543 2234455443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.24  E-value=1.2e-05  Score=70.51  Aligned_cols=91  Identities=22%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.+|..++..|...|.+|+++|+++++.+.+           .+.|..           ....+++.+ ++
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-----------~~~G~~-----------~~~~~~l~~~l~  209 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-----------TEMGLS-----------PFHLSELAEEVG  209 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCe-----------eecHHHHHHHhC
Confidence            4789999999999999999999999999999998765443           223321           001123333 68


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      ++|+||.++|...     +.++.-+.++++++|+...+.
T Consensus       210 ~aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        210 KIDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             CCCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence            8999999998532     122333345666766544443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.24  E-value=1.3e-05  Score=70.83  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=75.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||.|.+|+.+|..+..-|.+|..||+....  ..            ..                ...++++ ++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~----------------~~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------RE----------------GYTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------cc----------------ccCCHHHHHHh
Confidence            68999999999999999999999999999975321  00            00                0134565 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-++.-..++++++++ |++.   +....+.+.+... ..-.++..|.
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~  261 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVLV  261 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence            999999999877644433344556678888887 6653   3335777777532 2334555554

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.24  E-value=5.2e-06  Score=73.54  Aligned_cols=94  Identities=21%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||..++..+..  ...+|++|+|++++.+.+.+.+.+       .|.           .+....+.++
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~  185 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEA  185 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHH
Confidence            35789999999999999985554  347899999999988877544321       121           1244566665


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+|+.+.+....    ++.  .+.+++++.|...++
T Consensus       186 av~~aDIVi~aT~s~~p----vl~--~~~l~~g~~i~~ig~  220 (314)
T PRK06141        186 AVRQADIISCATLSTEP----LVR--GEWLKPGTHLDLVGN  220 (314)
T ss_pred             HHhcCCEEEEeeCCCCC----Eec--HHHcCCCCEEEeeCC
Confidence             7899999888876522    221  134566666554443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.23  E-value=9.5e-06  Score=70.30  Aligned_cols=71  Identities=25%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||..++..|.+.  +++|. ++|+++++.+...+          +.|.            ....+++++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~ee   63 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLDQ   63 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHHH
Confidence            47899999999999999999874  78876 88999887654411          1121            023455665


Q ss_pred             -cCCCcEEEEeccccHH
Q 022434           82 -LHSADIIVEAIVESED   97 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~   97 (297)
                       ++++|+|++|.|.+..
T Consensus        64 ll~~~D~Vvi~tp~~~h   80 (271)
T PRK13302         64 LATHADIVVEAAPASVL   80 (271)
T ss_pred             HhcCCCEEEECCCcHHH
Confidence             6789999999997653

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=98.23  E-value=7.3e-06  Score=72.60  Aligned_cols=106  Identities=16%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .-||+|||+ |.+|..+|..|...|.       +++++|+++  ++++.....+.+.        ..      ....+..
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~--------~~------~~~~~~~   68 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDC--------AF------PLLAGVV   68 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhc--------cc------cccCCcE
Confidence            358999998 9999999999998885       799999965  3233322222111        10      0011122


Q ss_pred             E-ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      . ..+++++++||+||.+.--              +..+.+++..++.++++++++++..|..+.
T Consensus        69 i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD  133 (323)
T TIGR01759        69 ATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN  133 (323)
T ss_pred             EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence            2 4567789999999987522              123445556668888776776665554443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.23  E-value=3.6e-06  Score=75.86  Aligned_cols=111  Identities=22%  Similarity=0.238  Sum_probs=71.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||.|.+|+.+|..+..-|.+|.+||+....  .               +.           . ....++++ ++
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~-~~~~~L~ell~  166 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------E-GDFRSLDELVQ  166 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------c-cccCCHHHHHh
Confidence            368999999999999999999999999999975321  0               00           0 01235666 68


Q ss_pred             CCcEEEEeccccHH---HHHHHH-HHHHhhcCCCeEEEecCCCC---cHHHHhhhcCC-CCeEEEeecCC
Q 022434           84 SADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTSSI---SITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      .||+|+..+|-..+   -...++ ++.-..++++++++ |++.-   .-..+.+.+.. ...-.++..|.
T Consensus       167 ~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e  235 (378)
T PRK15438        167 EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVWE  235 (378)
T ss_pred             hCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecCC
Confidence            99999999985442   011222 33445678888887 66543   33566666643 23344555544

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.21  E-value=4.3e-06  Score=64.65  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=52.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++|.|||+|.||++++..|+..|.+ |++++|+.++++.+.+.+         .+.         .-.+...++... +
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---------~~~---------~~~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---------GGV---------NIEAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---------TGC---------SEEEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---------Ccc---------ccceeeHHHHHHHH
Confidence            57999999999999999999999987 999999999887764332         010         000112233333 6


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      ..+|+||.|+|-..
T Consensus        74 ~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 QEADIVINATPSGM   87 (135)
T ss_dssp             HTESEEEE-SSTTS
T ss_pred             hhCCeEEEecCCCC
Confidence            78999999987654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=98.21  E-value=1.6e-05  Score=72.90  Aligned_cols=105  Identities=9%  Similarity=0.079  Sum_probs=70.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMD-------GL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .-||+|||+ |.+|..+|..|+..       |+  +++++|+++++++...-.+++..-.+              ..++.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~  165 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVS  165 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceE
Confidence            358999999 99999999999988       65  79999999998776544444332111              12233


Q ss_pred             -EecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           75 -CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        75 -~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                       .+.+++++++||+||.+..-              +..+.+++...|.++..++++++..+...
T Consensus       166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv  229 (444)
T PLN00112        166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC  229 (444)
T ss_pred             EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence             34677889999999987622              12234445555666555666655444333

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.19  E-value=4.5e-06  Score=73.98  Aligned_cols=105  Identities=10%  Similarity=0.043  Sum_probs=65.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .+||+|||+ |.+|..+|..++..|.       +++++|++++.  ++.....+.        +...      ....++.
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~--------~~~~------~~~~~~~   67 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELE--------DCAF------PLLAEIV   67 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhh--------hccc------cccCceE
Confidence            368999999 9999999999999886       79999996432  322111111        1100      0111222


Q ss_pred             E-ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      . ..+++++++||+||.+..-              +..+.+++..+|.++.+++++++..|...
T Consensus        68 i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv  131 (322)
T cd01338          68 ITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC  131 (322)
T ss_pred             EecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence            2 4566779999999987522              12344555566777776566655444433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.17  E-value=2.5e-05  Score=65.31  Aligned_cols=151  Identities=21%  Similarity=0.305  Sum_probs=106.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|++||+|.|..+++..+...|.    ++..+-.+......          .+.+.|.-            .+.++.+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g~~------------~~~~n~~~   58 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALGVK------------TVFTNLEV   58 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCCce------------eeechHHH
Confidence            479999999999999999999885    34444432211111          01222321            23444445


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-EecCCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGAD  160 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~~~~  160 (297)
                      ++.+|+++.++.  +.+...++.++......+.||.|..-+.+++.+...+..+.|++.+.+..|..+..... ...+..
T Consensus        59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~  136 (267)
T KOG3124|consen   59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH  136 (267)
T ss_pred             HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence            889999999984  34455666666665666778888888999988888888677899998888886666555 445566


Q ss_pred             CcHHHHHHHHHHHHHcCCeE
Q 022434          161 TSDETFRATKALAERFGKTV  180 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~  180 (297)
                      ...+..+.+.+++...|+-.
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~  156 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCE  156 (267)
T ss_pred             cchhhHHHHHHHHHhcCcce
Confidence            77778899999999999743

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.17  E-value=2e-05  Score=71.86  Aligned_cols=85  Identities=26%  Similarity=0.290  Sum_probs=60.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+           .+.|.             ......+.+++
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-----------~~~G~-------------~~~~~~e~v~~  257 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-----------AMEGY-------------EVMTMEEAVKE  257 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-----------HhcCC-------------EEccHHHHHcC
Confidence            3689999999999999999999999999999999887665           33443             11111123678


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +|+||+|......+.    .+.-..++++.+++
T Consensus       258 aDVVI~atG~~~~i~----~~~l~~mk~Ggilv  286 (413)
T cd00401         258 GDIFVTTTGNKDIIT----GEHFEQMKDGAIVC  286 (413)
T ss_pred             CCEEEECCCCHHHHH----HHHHhcCCCCcEEE
Confidence            999999986433222    22234566777665

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.16  E-value=2.2e-05  Score=69.57  Aligned_cols=108  Identities=20%  Similarity=0.272  Sum_probs=75.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||.|.+|+.+|..+..-|.+|..||+.... ...                             . ..++++ ++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~~-----------------------------~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-ARP-----------------------------D-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-ccc-----------------------------c-ccCHHHHHHh
Confidence            68999999999999999999999999999986321 000                             0 124565 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-++.-+.++++++++ |++.   +..+.+.+.+... ..-.++..|.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~  261 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVLS  261 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence            999999999877754444445556678888887 6653   3335677777532 2334555554

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.16  E-value=1.1e-05  Score=66.62  Aligned_cols=39  Identities=28%  Similarity=0.478  Sum_probs=36.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|+|+|.||..+|..|.+.|++|+++|+++++++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999998776654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.14  E-value=1.7e-05  Score=68.48  Aligned_cols=68  Identities=16%  Similarity=0.292  Sum_probs=50.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +||+|||+|.||..++..+.+.  +++ +.++|+++++.+.+.+          ..+             ....+++++ 
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence            5899999999999999998876  466 5588999887665421          111             134556666 


Q ss_pred             cCCCcEEEEeccccH
Q 022434           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      +.++|+|++|.+.+.
T Consensus        59 l~~~DvVvi~a~~~~   73 (265)
T PRK13304         59 VEDVDLVVECASVNA   73 (265)
T ss_pred             hcCCCEEEEcCChHH
Confidence            578999999997544

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.12  E-value=9.5e-06  Score=71.78  Aligned_cols=102  Identities=25%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -+++||||.|.+|..+|..+..-|.+|..||+++. -+..            +.+            ...+.+ +++ ++
T Consensus       146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~------------~~~------------~~~y~~-l~ell~  199 (324)
T COG1052         146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE------------KEL------------GARYVD-LDELLA  199 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH------------hhc------------Cceecc-HHHHHH
Confidence            47999999999999999999977889999999875 1111            111            013444 665 89


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATS  133 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~  133 (297)
                      .||+|+..+|-..+...-+-++.-+.++++++++ ||+.=   ....+.+.+.
T Consensus       200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~  251 (324)
T COG1052         200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK  251 (324)
T ss_pred             hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            9999999999888755545455666788888776 77643   3356666664

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.12  E-value=1.4e-05  Score=72.55  Aligned_cols=147  Identities=18%  Similarity=0.248  Sum_probs=91.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEE------EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWL------VDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~------~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      -++|+|||.|..|.+.|..|...|++|++      +|.+.+.-+.+           .+.|.             .+ .+
T Consensus        36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA-----------~~dGF-------------~v-~~   90 (487)
T PRK05225         36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA-----------TENGF-------------KV-GT   90 (487)
T ss_pred             CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHH-----------HhcCC-------------cc-CC
Confidence            37899999999999999999999999993      33333333332           33342             23 33


Q ss_pred             ccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCC-------
Q 022434           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM-------  150 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~-------  150 (297)
                      .++ ++.||+|+..+|+. . ...++.++.+.+++++.+..+. +..+.......+....++-+-|-.|-+..       
T Consensus        91 ~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G  167 (487)
T PRK05225         91 YEELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRG  167 (487)
T ss_pred             HHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcC
Confidence            444 89999999999987 3 6677788999999998876433 33322111111111234444444433211       


Q ss_pred             ---c-eEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434          151 ---K-LVEVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       151 ---~-~vei~~~~~~~~~~~~~~~~ll~~lg~~  179 (297)
                         | ++-|-.-...+-.+.+.+..+...+|..
T Consensus       168 ~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~  200 (487)
T PRK05225        168 FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGH  200 (487)
T ss_pred             CCceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence               1 2333311234556788888999999876

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.12  E-value=0.00013  Score=62.76  Aligned_cols=204  Identities=14%  Similarity=0.242  Sum_probs=117.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHH----HHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKS----ISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      +.+|+-||+|++|.+-....+..  ..+|+++|.+..++.+-...    .+..++..++         ..+-.++-+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence            36899999999999887766553  46899999998877542110    1122222222         123356678889


Q ss_pred             ccc-cCCCcEEEEecccc-------------HHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEe
Q 022434           79 LKD-LHSADIIVEAIVES-------------EDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGM  141 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~-------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~  141 (297)
                      .+. ++++|+|+.+|-.+             +..-....+.|.+....+.|+. ..|++|+   +.+...+.+...  |+
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i  148 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI  148 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence            887 99999999998542             2223344455666666666665 5666665   344444432221  22


Q ss_pred             ec---CCCCCCC----------ceEEEecCCCCcH--HHHHHHHHHHHHc-CCeEEEe-----ccchhhhHHHHHH---H
Q 022434          142 HF---MNPPPLM----------KLVEVIRGADTSD--ETFRATKALAERF-GKTVVCS-----QDYAGFIVNRILM---P  197 (297)
Q Consensus       142 h~---~~p~~~~----------~~vei~~~~~~~~--~~~~~~~~ll~~l-g~~~i~v-----~d~~g~i~nri~~---~  197 (297)
                      +|   .||..+.          +---++.|..+.+  .+++.+..+++.+ -..-+..     .+...+.+|..++   .
T Consensus       149 ~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqris  228 (481)
T KOG2666|consen  149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRIS  228 (481)
T ss_pred             eeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHh
Confidence            22   2232111          1123555554432  2445555555543 2222222     2334445555554   3


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHH
Q 022434          198 MINEAFFTLYTGVATKEDIDAGM  220 (297)
Q Consensus       198 ~~~Ea~~l~~~g~~~~~~id~a~  220 (297)
                      -+|....++|.-+++..++..|.
T Consensus       229 sins~salceatgadv~eva~av  251 (481)
T KOG2666|consen  229 SINSMSALCEATGADVSEVAYAV  251 (481)
T ss_pred             hhHHHHHHHHhcCCCHHHHHHHh
Confidence            46777788888889999988876

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.10  E-value=1.4e-05  Score=60.80  Aligned_cols=101  Identities=27%  Similarity=0.427  Sum_probs=57.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +||+|+|+ |.||+.++..+.+ .|+++. ++|++++...                |.-..+-.......+.+.+++++ 
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~----------------g~d~g~~~~~~~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV----------------GKDVGELAGIGPLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT----------------TSBCHHHCTSST-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc----------------cchhhhhhCcCCcccccchhHHHh
Confidence            48999999 9999999999988 788855 6688762110                00000000011223456677777 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHH
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR  127 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~  127 (297)
                      ++.+|++|+...  ++   .+...++..++.+..+++.|++...++
T Consensus        65 ~~~~DVvIDfT~--p~---~~~~~~~~~~~~g~~~ViGTTG~~~~~  105 (124)
T PF01113_consen   65 LEEADVVIDFTN--PD---AVYDNLEYALKHGVPLVIGTTGFSDEQ  105 (124)
T ss_dssp             TTH-SEEEEES---HH---HHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred             cccCCEEEEcCC--hH---HhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence            677999999872  22   222233333334566666787887543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.10  E-value=0.00016  Score=62.02  Aligned_cols=146  Identities=21%  Similarity=0.232  Sum_probs=90.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|+|||.|..|.+-|.+|..+|.+|++=-|.... -+++           .+.|.             .+.+-.++++
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dGf-------------~V~~v~ea~k   73 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDGF-------------KVYTVEEAAK   73 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcCC-------------EeecHHHHhh
Confidence            479999999999999999999999998877665443 2222           45553             3444445589


Q ss_pred             CCcEEEEeccccHHHHHHHHH-HHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCC----------c-
Q 022434           84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM----------K-  151 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~----------~-  151 (297)
                      .||+|+..+|+..  ..+++. +|.+.++.+..+.... ++.+..-.-..+....++-+-|-.|-+..          | 
T Consensus        74 ~ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~FaH-GfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~  150 (338)
T COG0059          74 RADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGFAH-GFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA  150 (338)
T ss_pred             cCCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEecc-ccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence            9999999999766  446666 7999998887665332 22221100000111123333333333211          1 


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~  179 (297)
                      ++-|-  ...+-.+.+.+..+.+.+|..
T Consensus       151 LiAV~--qD~sG~a~~~Ala~AkgiGg~  176 (338)
T COG0059         151 LIAVH--QDASGKALDIALAYAKGIGGT  176 (338)
T ss_pred             EEEEE--eCCCchHHHHHHHHHHhcCCC
Confidence            22222  223445788888899999853

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.10  E-value=5.3e-05  Score=63.79  Aligned_cols=92  Identities=18%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE--ecC---cc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC--TSN---LK   80 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~---~~   80 (297)
                      |+|.|||+|.+|.++|..|.+.||+|+++|++++++++....         +...           +...  .++   ++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---------~~~~-----------~~v~gd~t~~~~L~   60 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---------ELDT-----------HVVIGDATDEDVLE   60 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---------hcce-----------EEEEecCCCHHHHH
Confidence            589999999999999999999999999999999987763110         0110           0011  122   22


Q ss_pred             -c-cCCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEec
Q 022434           81 -D-LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASN  119 (297)
Q Consensus        81 -~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~  119 (297)
                       . +.++|+++-+..++..  ..++..+... .....+++..
T Consensus        61 ~agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar~  100 (225)
T COG0569          61 EAGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIARA  100 (225)
T ss_pred             hcCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEEe
Confidence             2 6889999999988763  3344444322 3444555533

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=98.09  E-value=3.9e-05  Score=69.32  Aligned_cols=104  Identities=11%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLV--DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .-||+|||+ |.+|..+|..++..|.       .++++  |+++++++...-.+.+..-.+              ..++.
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~--------------~~~v~  109 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPL--------------LREVS  109 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhh--------------cCceE
Confidence            358999999 9999999999998875       24445  888887765544443332111              12233


Q ss_pred             -EecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434           75 -CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        75 -~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                       .+.+++++++||+||.+..-              +..+.+++...|.++.+++++++..|..
T Consensus       110 i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP  172 (387)
T TIGR01757       110 IGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP  172 (387)
T ss_pred             EecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence             24667789999999986522              1233445555677777677766544433

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.09  E-value=1.7e-05  Score=72.93  Aligned_cols=89  Identities=29%  Similarity=0.348  Sum_probs=62.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.+|+.+|..+...|.+|+++|+++.+...+           ...|.             .. .++++ ++
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-----------~~~G~-------------~~-~~leell~  308 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-----------AMEGY-------------QV-VTLEDVVE  308 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-----------HhcCc-------------ee-ccHHHHHh
Confidence            4789999999999999999999999999999998764332           12232             11 23444 78


Q ss_pred             CCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEecCCCCc
Q 022434           84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSIS  124 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      .+|+||.+....     .++ .+.-..++++++++ |++...
T Consensus       309 ~ADIVI~atGt~-----~iI~~e~~~~MKpGAiLI-NvGr~d  344 (476)
T PTZ00075        309 TADIFVTATGNK-----DIITLEHMRRMKNNAIVG-NIGHFD  344 (476)
T ss_pred             cCCEEEECCCcc-----cccCHHHHhccCCCcEEE-EcCCCc
Confidence            999999986432     233 23334567888877 555544

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=98.09  E-value=2.2e-05  Score=69.12  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC---
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN---   78 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---   78 (297)
                      +||+|||+ |.+|+.+|..|+..|.  +++++|++  +++...-.        ++.+.        ...++... .+   
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD--------L~~~~--------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD--------LSHIN--------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH--------hHhCC--------CcceEEEecCCCch
Confidence            48999999 9999999999998884  89999998  22211001        11111        11234432 33   


Q ss_pred             ccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           79 LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++++++||+||.+..-              +..+.+++...+.++.+ +++++
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vi  114 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALIL  114 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            6789999999987632              12334455556777754 56554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.07  E-value=2.5e-05  Score=70.95  Aligned_cols=99  Identities=25%  Similarity=0.252  Sum_probs=65.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+           ...|.             .+.+..+.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-----------~~~G~-------------~v~~leeal~~  250 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-----------AMDGF-------------RVMTMEEAAKI  250 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-----------HhcCC-------------EeCCHHHHHhc
Confidence            4789999999999999999999999999999998765433           22332             12211123778


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhh
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASA  131 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~  131 (297)
                      +|+||++......+.    .+.-..++++++++.....   +....+.+.
T Consensus       251 aDVVItaTG~~~vI~----~~~~~~mK~GailiN~G~~~~eId~~aL~~~  296 (406)
T TIGR00936       251 GDIFITATGNKDVIR----GEHFENMKDGAIVANIGHFDVEIDVKALEEL  296 (406)
T ss_pred             CCEEEECCCCHHHHH----HHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence            999999876432222    2234567788877633321   334455443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02306 hydroxypyruvate reductase

Probab=98.05  E-value=4.9e-05  Score=69.00  Aligned_cols=128  Identities=21%  Similarity=0.276  Sum_probs=77.5

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ++|||||.|.+|+.+|..+. .-|.+|..||+.... .+...+...   ..+...+..        ...+....++++ +
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~--------~~~~~~~~~L~ell  234 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQ--------PVTWKRASSMEEVL  234 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---ccccccccc--------cccccccCCHHHHH
Confidence            78999999999999999986 679999999987542 111100000   000000000        001122346776 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +.||+|+.++|-..+.+.-+-++.-+.++++++++ |++.-   ....+.+.+... -...++.-|.
T Consensus       235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~  300 (386)
T PLN02306        235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVFE  300 (386)
T ss_pred             hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence            99999999999777644444445556788898887 66532   335677766432 2334555554

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.04  E-value=2.4e-05  Score=69.31  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=51.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++|+|||+|.||..++..|...| .+|+++||++++.+.+.+.          .|.           .....++..+ +
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l  236 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-----------NAVPLDELLELL  236 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-----------eEEeHHHHHHHH
Confidence            578999999999999999998866 6899999999876554221          121           0011123333 6


Q ss_pred             CCCcEEEEeccccHH
Q 022434           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .++|+||.|++.+..
T Consensus       237 ~~aDvVi~at~~~~~  251 (311)
T cd05213         237 NEADVVISATGAPHY  251 (311)
T ss_pred             hcCCEEEECCCCCch
Confidence            789999999986654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=98.04  E-value=2.1e-05  Score=69.29  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-e-cC--c
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-T-SN--L   79 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~   79 (297)
                      ||+|||+ |.+|..+|..|+..|+  ++.++|+++. ...+       ++  ++++.        ...++.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a-~g~a-------~D--L~~~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA-AGVA-------AD--LSHIP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC-cEEE-------ch--hhcCC--------cCceEEEecCCCchH
Confidence            6999999 9999999999998886  8999999871 1111       00  11111        1123333 2 22  6


Q ss_pred             cccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           80 KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +++++||+||.+..-              +..+.+++...+.++. ++++++.-|.
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsN  117 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITN  117 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence            779999999987632              2234445555677765 5555443333

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=98.04  E-value=4e-05  Score=61.90  Aligned_cols=32  Identities=41%  Similarity=0.627  Sum_probs=29.8

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      +|.|||+|.||+.++..|+..|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 599999886

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.03  E-value=2.9e-05  Score=70.99  Aligned_cols=84  Identities=31%  Similarity=0.362  Sum_probs=59.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+           ...|.             .+ .+.++ ++
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-----------~~~G~-------------~v-~~l~eal~  266 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-----------AMDGF-------------RV-MTMEEAAE  266 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-----------HhcCC-------------Ee-cCHHHHHh
Confidence            4689999999999999999999999999999998765433           22232             11 12333 67


Q ss_pred             CCcEEEEeccccHHHHHHHHH-HHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s  118 (297)
                      ++|+||++.....     ++. +.-..++++++++.
T Consensus       267 ~aDVVI~aTG~~~-----vI~~~~~~~mK~GailiN  297 (425)
T PRK05476        267 LGDIFVTATGNKD-----VITAEHMEAMKDGAILAN  297 (425)
T ss_pred             CCCEEEECCCCHH-----HHHHHHHhcCCCCCEEEE
Confidence            8999999875322     232 34456778887763

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=98.03  E-value=1.3e-05  Score=70.31  Aligned_cols=93  Identities=19%  Similarity=0.318  Sum_probs=60.0

Q ss_pred             EECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccccCCCc
Q 022434           10 VVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKDLHSAD   86 (297)
Q Consensus        10 viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aD   86 (297)
                      |||+|.+|..+|..|+..+.  ++.++|+++++++.....+.+....              ...+... ..+++++++||
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~--------------~~~~~~i~~~~~~~~~daD   66 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASF--------------LPTPKKIRSGDYSDCKDAD   66 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcc--------------cCCCeEEecCCHHHHCCCC
Confidence            69999999999999998886  7999999887665543333322110              0111222 35677899999


Q ss_pred             EEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           87 IIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        87 ~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||.+...              +..+.+++...+.++. ++++++
T Consensus        67 ivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi  110 (299)
T TIGR01771        67 LVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL  110 (299)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            99987632              1223444555566664 455544

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.02  E-value=0.00012  Score=63.76  Aligned_cols=174  Identities=22%  Similarity=0.224  Sum_probs=101.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CC-----cEEEEeCCHHHHH---HHHHHHHHH--HHHHHHcCCCChhhhcccCCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GL-----DVWLVDTDPDALV---RATKSISSS--IQKFVSKGQLSQAVGTDAPRR   72 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~---~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~   72 (297)
                      ..||+|||+|++|++||..+..+  ++     +|..|-+.++.-.   .+.+-|...  .-+|+.        .-....+
T Consensus        21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlp--------g~~lP~N   92 (372)
T KOG2711|consen   21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLP--------GIKLPEN   92 (372)
T ss_pred             ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccC--------CccCCCC
Confidence            46899999999999999987764  22     5777755433221   222222110  001111        1233466


Q ss_pred             cEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-----------HHHhhhcCCCCeEEE
Q 022434           73 LRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------TRLASATSRPCQVIG  140 (297)
Q Consensus        73 i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------~~l~~~~~~~~~~~g  140 (297)
                      +.+.+|+.+ +.+||++|..+|...  ...+..+|..+.++++..+|.+.++..           +.|.+.+..|..++.
T Consensus        93 vvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~  170 (372)
T KOG2711|consen   93 VVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLM  170 (372)
T ss_pred             eEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeec
Confidence            778888876 889999999999544  667899999999999988887766552           234444544443322


Q ss_pred             eecCCCC-CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          141 MHFMNPP-PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       141 ~h~~~p~-~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      ..-+.+. .--...|-..+.....+.-..+..+|+.--.+++.+.|..+
T Consensus       171 GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~  219 (372)
T KOG2711|consen  171 GANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG  219 (372)
T ss_pred             CCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence            1111000 00012333333222233333466777776677777777654

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=2.1e-05  Score=68.49  Aligned_cols=70  Identities=29%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVD-TDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      -++|+||| .|.||.+||.+|.++|+.|++|+ ++++ ++                                     +.+
T Consensus       158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~  199 (296)
T PRK14188        158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVC  199 (296)
T ss_pred             CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHH
Confidence            47999999 89999999999999999999995 6642 11                                     114


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      +.||+||.|++.+..+...       +++++++++..
T Consensus       200 ~~ADIVIsavg~~~~v~~~-------~lk~GavVIDv  229 (296)
T PRK14188        200 RRADILVAAVGRPEMVKGD-------WIKPGATVIDV  229 (296)
T ss_pred             hcCCEEEEecCChhhcchh-------eecCCCEEEEc
Confidence            5799999999976544332       26677776643

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.99  E-value=3.5e-05  Score=68.61  Aligned_cols=94  Identities=13%  Similarity=0.172  Sum_probs=63.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.||...+..+..  ...+|.+||+++++.+.+.++++       +.|.           .+...++.++
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~e  188 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPRE  188 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHH
Confidence            35789999999999997665544  34689999999999887755432       1121           1245566666


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+|+.|+|....    ++.  .+++++++.|....|
T Consensus       189 av~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       189 AVEGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGA  223 (325)
T ss_pred             HhccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence             8999999999986543    221  234567776654433

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK04148 hypothetical protein; Provisional

Probab=97.97  E-value=8e-05  Score=56.86  Aligned_cols=96  Identities=23%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .++|.+||+| -|..+|..|++.|++|+.+|.+++.++.+++           .+. .     ...+.+ +..+.+--++
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-----------~~~-~-----~v~dDl-f~p~~~~y~~   77 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK-----------LGL-N-----AFVDDL-FNPNLEIYKN   77 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCC-e-----EEECcC-CCCCHHHHhc
Confidence            3679999999 8999999999999999999999998776622           221 0     000110 1223333689


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +|+|-..-|.. + .+.-+.++.+....+.+|-.-+.
T Consensus        78 a~liysirpp~-e-l~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         78 AKLIYSIRPPR-D-LQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             CCEEEEeCCCH-H-HHHHHHHHHHHcCCCEEEEcCCC
Confidence            99999988753 3 44555667777777777764443

>PLN00106 malate dehydrogenase

Probab=97.97  E-value=5.1e-05  Score=67.18  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~   38 (297)
                      ..||+|||+ |.+|..+|..|+..++  ++.++|+++
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            368999999 9999999999998775  899999987

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.95  E-value=0.00052  Score=60.71  Aligned_cols=159  Identities=16%  Similarity=0.181  Sum_probs=91.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc---cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL---KD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~   81 (297)
                      -++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.+           .+.|+-          .+..+.+.   +.
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a-----------~~lGAd----------~~i~~~~~~~~~~  225 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELA-----------KKLGAD----------HVINSSDSDALEA  225 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHH-----------HHhCCc----------EEEEcCCchhhHH
Confidence            4789999999888666666666899999999999998877           444541          11111111   12


Q ss_pred             cC-CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCC
Q 022434           82 LH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        82 ~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~  160 (297)
                      ++ .+|++|++++ ...+.    ..+..+.+.++++...-..  ..          .....+.+  ..+.....|..+..
T Consensus       226 ~~~~~d~ii~tv~-~~~~~----~~l~~l~~~G~~v~vG~~~--~~----------~~~~~~~~--~li~~~~~i~GS~~  286 (339)
T COG1064         226 VKEIADAIIDTVG-PATLE----PSLKALRRGGTLVLVGLPG--GG----------PIPLLPAF--LLILKEISIVGSLV  286 (339)
T ss_pred             hHhhCcEEEECCC-hhhHH----HHHHHHhcCCEEEEECCCC--Cc----------ccCCCCHH--HhhhcCeEEEEEec
Confidence            22 2888888887 44322    2223333445544321110  00          00000000  01233456666666


Q ss_pred             CcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCC
Q 022434          161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVA  211 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~  211 (297)
                      ++....+.+.+|...-+-+|.+...        +-..-+|||+..+++|-+
T Consensus       287 g~~~d~~e~l~f~~~g~Ikp~i~e~--------~~l~~in~A~~~m~~g~v  329 (339)
T COG1064         287 GTRADLEEALDFAAEGKIKPEILET--------IPLDEINEAYERMEKGKV  329 (339)
T ss_pred             CCHHHHHHHHHHHHhCCceeeEEee--------ECHHHHHHHHHHHHcCCe
Confidence            7888888888888887777765311        123347888888887643

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=97.93  E-value=0.00012  Score=61.63  Aligned_cols=75  Identities=20%  Similarity=0.303  Sum_probs=55.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ..||.|||.|.+|.+.|..++..|.  ++.++|.++++++...=.        .++|.     .-....++....|+..-
T Consensus        20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s-----~f~~~~~V~~~~Dy~~s   86 (332)
T KOG1495|consen   20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGS-----AFLSTPNVVASKDYSVS   86 (332)
T ss_pred             CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hcccc-----ccccCCceEecCccccc
Confidence            5789999999999999999888885  899999999877543111        22221     11223566667788888


Q ss_pred             CCCcEEEEec
Q 022434           83 HSADIIVEAI   92 (297)
Q Consensus        83 ~~aD~Vi~~v   92 (297)
                      +++++||.+.
T Consensus        87 a~S~lvIiTA   96 (332)
T KOG1495|consen   87 ANSKLVIITA   96 (332)
T ss_pred             CCCcEEEEec
Confidence            9999999876

>cd00704 MDH Malate dehydrogenase

Probab=97.92  E-value=2e-05  Score=69.93  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-   75 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-   75 (297)
                      ||+|||+ |.+|..+|..|+..|.       +++++|+++  +.++.....+.+..              ......... 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~--------------~~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCA--------------FPLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhc--------------ccccCCcEEe
Confidence            7999999 9999999999998663       599999987  43322111111100              001111223 


Q ss_pred             ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           76 TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        76 ~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ..+++++++||+||.+.-.              +..+.+++..+|.++++++++++..|...
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv  129 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA  129 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence            3556779999999976521              22344555566777765566555444333

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.90  E-value=5.9e-05  Score=66.97  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCCcEE
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAVGT-DAPRRLRC   75 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~   75 (297)
                      ||+|||+ |.+|+.+|..|+..|.       +++++|++++.  ++.....+.+               .. .....+..
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d---------------~~~~~~~~~~~   65 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMD---------------CAFPLLDGVVP   65 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhc---------------ccchhcCceec
Confidence            5899999 9999999999998654       59999996542  2211001110               00 01122333


Q ss_pred             e-cCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           76 T-SNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        76 ~-~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      + ++++++++||+||.+...              +..+.+++..+|.++++++++++..|....
T Consensus        66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD  129 (324)
T TIGR01758        66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN  129 (324)
T ss_pred             cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence            3 346779999999986522              112344455567777656666654444333

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.89  E-value=6.2e-05  Score=65.69  Aligned_cols=42  Identities=19%  Similarity=0.325  Sum_probs=37.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|||+|.+|++++..|+..|. +|+++||+.++.+.+.+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~  170 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE  170 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence            689999999999999999999997 799999999888776444

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.87  E-value=7e-05  Score=64.95  Aligned_cols=42  Identities=10%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .+++.|+|+|.+|++++..|+..|++|++++|++++++...+
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~  158 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE  158 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            468999999999999999999999999999999887766543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.86  E-value=7e-05  Score=65.88  Aligned_cols=115  Identities=18%  Similarity=0.179  Sum_probs=76.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|+|+|.+|..+|.+|..-|-.+.-+.|++...+..           .+.+.              -..|.++ ++
T Consensus       162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~-----------~~~~~--------------~~~d~~~~~~  216 (336)
T KOG0069|consen  162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEA-----------YEYYA--------------EFVDIEELLA  216 (336)
T ss_pred             CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhH-----------HHhcc--------------cccCHHHHHh
Confidence            4799999999999999999999993344445655544433           11111              1344555 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .+|+|+.+.|-..+...-+-+++-..++++++|+ |+.--   .-..+.+.+... -.-.|..-|.
T Consensus       217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-N~aRG~iide~~l~eaL~sG~i~~aGlDVf~  281 (336)
T KOG0069|consen  217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-NTARGAIIDEEALVEALKSGKIAGAGLDVFE  281 (336)
T ss_pred             hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-eccccccccHHHHHHHHhcCCcccccccccC
Confidence            9999999999998866666667778889988887 55432   225666665321 1224455554

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.86  E-value=0.00012  Score=61.15  Aligned_cols=33  Identities=36%  Similarity=0.534  Sum_probs=30.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~   37 (297)
                      ..+|.|||+|.+|+.+|..|+..|.. ++++|.+
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999984 9999988

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.85  E-value=0.00029  Score=56.95  Aligned_cols=74  Identities=18%  Similarity=0.322  Sum_probs=48.6

Q ss_pred             EEEEECCChhHHHHHH--HHHHC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            7 VMGVVGSGQMGSGIAQ--LGVMD----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~--~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ||+|||+|..-.+.-.  .+...    +-+++++|+|+++++......++..+   +.|.         .-++..++|.+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~---~~~~---------~~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVE---EAGA---------DLKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHH---HCTT---------SSEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHH---hcCC---------CeEEEEeCCHH
Confidence            7999999988665433  23332    34899999999999876555444432   1221         23456788887


Q ss_pred             c-cCCCcEEEEec
Q 022434           81 D-LHSADIIVEAI   92 (297)
Q Consensus        81 ~-~~~aD~Vi~~v   92 (297)
                      + +++||+||.++
T Consensus        69 eAl~gADfVi~~i   81 (183)
T PF02056_consen   69 EALEGADFVINQI   81 (183)
T ss_dssp             HHHTTESEEEE--
T ss_pred             HHhCCCCEEEEEe
Confidence            6 99999999876

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=4.3e-05  Score=65.99  Aligned_cols=69  Identities=30%  Similarity=0.326  Sum_probs=52.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||. |.||.+||..|.++|+.|++|....                                      .++++ +
T Consensus       158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------------------------------~~l~~~~  199 (284)
T PRK14179        158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------------------------------RNLAEVA  199 (284)
T ss_pred             CCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------------------------------CCHHHHH
Confidence            478999999 9999999999999999999994221                                      12333 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +.||+||.+++.+..+...       +++++++++.
T Consensus       200 ~~ADIVI~avg~~~~v~~~-------~ik~GavVID  228 (284)
T PRK14179        200 RKADILVVAIGRGHFVTKE-------FVKEGAVVID  228 (284)
T ss_pred             hhCCEEEEecCccccCCHH-------HccCCcEEEE
Confidence            7899999999876654433       3677777663

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.80  E-value=0.00067  Score=56.14  Aligned_cols=127  Identities=17%  Similarity=0.210  Sum_probs=74.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC--cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN--LK   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~   80 (297)
                      -++|.|||+|.+|...+..|.++|++|++++++.. .+...           .+.+.+            .+. ..  .+
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~i------------~~~~~~~~~~   66 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGKI------------RWKQKEFEPS   66 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCCE------------EEEecCCChh
Confidence            47899999999999999999999999999987642 12211           233321            221 11  23


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRG  158 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~  158 (297)
                      ++.++|+||.|+.+ .++...+..    .+..+.++  |...           .|..   ..|+.|..  ..++.--+.+
T Consensus        67 ~l~~adlViaaT~d-~elN~~i~~----~a~~~~lv--n~~d-----------~~~~---~~f~~Pa~~~~g~l~iaIsT  125 (202)
T PRK06718         67 DIVDAFLVIAATND-PRVNEQVKE----DLPENALF--NVIT-----------DAES---GNVVFPSALHRGKLTISVST  125 (202)
T ss_pred             hcCCceEEEEcCCC-HHHHHHHHH----HHHhCCcE--EECC-----------CCcc---CeEEEeeEEEcCCeEEEEEC
Confidence            48899999988764 343444433    33333333  2221           1111   23444442  2233334555


Q ss_pred             CCCcHHHHHHHHHHHHH
Q 022434          159 ADTSDETFRATKALAER  175 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~  175 (297)
                      .+.+|.....+++-++.
T Consensus       126 ~G~sP~la~~lr~~ie~  142 (202)
T PRK06718        126 DGASPKLAKKIRDELEA  142 (202)
T ss_pred             CCCChHHHHHHHHHHHH
Confidence            66788877777766664

>PLN02494 adenosylhomocysteinase

Probab=97.79  E-value=9.8e-05  Score=67.91  Aligned_cols=86  Identities=26%  Similarity=0.349  Sum_probs=60.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|+|.|.+|+.+|..+...|.+|+++|+++.+...+           ...|.             .+. +.++ ++
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-----------~~~G~-------------~vv-~leEal~  308 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-----------LMEGY-------------QVL-TLEDVVS  308 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-----------HhcCC-------------eec-cHHHHHh
Confidence            3789999999999999999999999999999998764433           23332             111 3334 67


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .+|+||++......    +..+.-..++++++++..
T Consensus       309 ~ADVVI~tTGt~~v----I~~e~L~~MK~GAiLiNv  340 (477)
T PLN02494        309 EADIFVTTTGNKDI----IMVDHMRKMKNNAIVCNI  340 (477)
T ss_pred             hCCEEEECCCCccc----hHHHHHhcCCCCCEEEEc
Confidence            89999987654322    223333467888877733

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.77  E-value=0.00013  Score=65.07  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             CcEEEEECCChhHHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGV-MDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++++|||+|.+|...+..|+ ..+. +|++|+|++++.+.+.+++.+.      .|.           .+...++.++ 
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~------~g~-----------~v~~~~~~~~a  191 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSL------LGI-----------DVTAATDPRAA  191 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhh------cCc-----------eEEEeCCHHHH
Confidence            468999999999999999987 4664 6999999999988775554311      111           1233456665 


Q ss_pred             cCCCcEEEEeccccH
Q 022434           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      +++||+|+.|.|...
T Consensus       192 v~~aDiVvtaT~s~~  206 (326)
T TIGR02992       192 MSGADIIVTTTPSET  206 (326)
T ss_pred             hccCCEEEEecCCCC
Confidence            789999999998644

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.77  E-value=4.8e-05  Score=60.53  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |||+|||+ |..|+.|+.-..+.||+|+.+-||++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence            58999999 999999999999999999999999998754

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.76  E-value=0.0006  Score=51.19  Aligned_cols=93  Identities=16%  Similarity=0.333  Sum_probs=60.3

Q ss_pred             EEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            7 VMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ||+|||+|.+|......+...  +++++ ++|+++++.+.+.+          +.|             +...+|.++ +
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~----------~~~-------------~~~~~~~~~ll   58 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE----------KYG-------------IPVYTDLEELL   58 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH----------HTT-------------SEEESSHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH----------Hhc-------------ccchhHHHHHH
Confidence            799999999999999888776  45654 78999988776521          122             235667766 4


Q ss_pred             C--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           83 H--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +  +.|+|+.++|.....  ++.....+.  ...+++--.-..+.+
T Consensus        59 ~~~~~D~V~I~tp~~~h~--~~~~~~l~~--g~~v~~EKP~~~~~~  100 (120)
T PF01408_consen   59 ADEDVDAVIIATPPSSHA--EIAKKALEA--GKHVLVEKPLALTLE  100 (120)
T ss_dssp             HHTTESEEEEESSGGGHH--HHHHHHHHT--TSEEEEESSSSSSHH
T ss_pred             HhhcCCEEEEecCCcchH--HHHHHHHHc--CCEEEEEcCCcCCHH
Confidence            4  789999999987642  333332221  224555444444443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.75  E-value=0.00055  Score=59.84  Aligned_cols=158  Identities=20%  Similarity=0.259  Sum_probs=84.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .-|||+||+|.||+.|+.+.+. .|.+|..+ |++.....++.++.-..-...++.-..+.-..+...+.+.+++|.+.+
T Consensus        17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i   96 (438)
T COG4091          17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI   96 (438)
T ss_pred             ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence            3589999999999999998665 69987754 888776665543221000000111000111111122455677877763


Q ss_pred             ---CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC-----CCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE
Q 022434           83 ---HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-----SISITRLASATSRPCQVIGMHFMNPPPLMKLVE  154 (297)
Q Consensus        83 ---~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-----~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve  154 (297)
                         ...|+||++.--...--+..+..|.   ....++..|.-     +.-+.+.+..       .|+-|           
T Consensus        97 ~~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~Ad~-------~Gviy-----------  155 (438)
T COG4091          97 IANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQADA-------AGVIY-----------  155 (438)
T ss_pred             hcCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHHHhh-------cCeEE-----------
Confidence               3468999987433322223333333   34445554531     1112233332       22221           


Q ss_pred             EecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          155 VIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       155 i~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                       ..+.+-.|...-.+.+|.+++|..++..+
T Consensus       156 -S~~~GDeP~~~mEL~efa~a~G~evv~aG  184 (438)
T COG4091         156 -SGGAGDEPSSCMELYEFASALGFEVVSAG  184 (438)
T ss_pred             -eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence             22333566667777788889998887653

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.75  E-value=0.00021  Score=63.25  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCC--CcEEEEeCC
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDG--LDVWLVDTD   37 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G--~~V~~~d~~   37 (297)
                      +++||+|||+ |.+|+.+|..|+..+  .+++++|++
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~   43 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV   43 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence            4689999999 999999999999666  589999993

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.74  E-value=5.7e-05  Score=67.99  Aligned_cols=75  Identities=23%  Similarity=0.361  Sum_probs=54.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCc---
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNL---   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---   79 (297)
                      +++|.|||+|.+|+.+|..|+++| ++|++.||+.++++++.+...         +.+..         +++ ..+.   
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~---------~~vD~~d~~al   62 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEA---------LQVDAADVDAL   62 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------cccee---------EEecccChHHH
Confidence            368999999999999999999999 999999999998887732211         11111         111 1122   


Q ss_pred             -cccCCCcEEEEeccccHH
Q 022434           80 -KDLHSADIIVEAIVESED   97 (297)
Q Consensus        80 -~~~~~aD~Vi~~v~e~~~   97 (297)
                       +.+++.|+||.++|....
T Consensus        63 ~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748          63 VALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             HHHHhcCCEEEEeCCchhh
Confidence             226888999999987654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.74  E-value=0.00017  Score=64.32  Aligned_cols=92  Identities=16%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.+|...+..++. .+ .+|.+|+|++++.+++.+.+...      .+.           .+...++.++ 
T Consensus       127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~------~~~-----------~~~~~~~~~~~  189 (325)
T PRK08618        127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK------FNT-----------EIYVVNSADEA  189 (325)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh------cCC-----------cEEEeCCHHHH
Confidence            5789999999999998877653 45 47999999999888775544321      111           1234566555 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ++++|+||.|.|...    .++.   ..+++++.|....
T Consensus       190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iG  221 (325)
T PRK08618        190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVG  221 (325)
T ss_pred             HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecC
Confidence            789999999998653    2332   3456676655443

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.73  E-value=5.6e-05  Score=69.62  Aligned_cols=71  Identities=20%  Similarity=0.223  Sum_probs=50.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (297)
                      .++|+|||+|.||..++..|...| .+|++++++.++.+...+.          .|..          . ....+.. .+
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~----------~g~~----------~-i~~~~l~~~l  238 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE----------LGGE----------A-VKFEDLEEYL  238 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------cCCe----------E-eeHHHHHHHH
Confidence            368999999999999999999999 7899999998876544211          1210          0 1112333 36


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .++|+||.|++...
T Consensus       239 ~~aDvVi~aT~s~~  252 (417)
T TIGR01035       239 AEADIVISSTGAPH  252 (417)
T ss_pred             hhCCEEEECCCCCC
Confidence            78999999986543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.71  E-value=0.0008  Score=62.13  Aligned_cols=75  Identities=15%  Similarity=0.223  Sum_probs=50.6

Q ss_pred             cEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|.. +..+...|++.     +-+|+++|+++++++......++.    .+...        ..-++..++|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~----~~~~g--------~~~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKIL----FKENY--------PEIKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHH----HHhhC--------CCeEEEEECCH
Confidence            58999999985 33344445443     468999999999988754443333    33211        11246778887


Q ss_pred             cc-cCCCcEEEEec
Q 022434           80 KD-LHSADIIVEAI   92 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v   92 (297)
                      .+ +++||+||.++
T Consensus        69 ~eAl~gADfVi~~i   82 (437)
T cd05298          69 EEAFTDADFVFAQI   82 (437)
T ss_pred             HHHhCCCCEEEEEe
Confidence            76 99999999876

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK05086 malate dehydrogenase; Provisional

Probab=97.70  E-value=0.00029  Score=62.30  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH---CCCcEEEEeCCHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVM---DGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~   39 (297)
                      +||+|||+ |.+|..++..+..   .+++++++|+++.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~   38 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV   38 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence            58999999 9999999998855   3468999999854

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.70  E-value=0.00019  Score=62.55  Aligned_cols=73  Identities=16%  Similarity=0.217  Sum_probs=52.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-ccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-KDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~   82 (297)
                      .+++.|+|+|.+|++++..|+..| .+|++++|+.++++.+.+.+..       .+            .+.+..+. +.+
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~  183 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEEL  183 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhcc
Confidence            368999999999999999999999 7899999999887766433210       00            01121122 336


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .++|+||.|+|-..
T Consensus       184 ~~~DivInaTp~g~  197 (278)
T PRK00258        184 ADFDLIINATSAGM  197 (278)
T ss_pred             ccCCEEEECCcCCC
Confidence            78999999987544

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.70  E-value=0.001  Score=61.25  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=50.8

Q ss_pred             cEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|.. ...+...|+..     +-+|+++|+++++++...+..++.    .+...        ..-++..++|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~----~~~~g--------~~~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRY----VEEVG--------ADIKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHH----HHhhC--------CCeEEEEeCCH
Confidence            48999999874 33445555543     468999999999988754444433    33211        11246678888


Q ss_pred             cc-cCCCcEEEEec
Q 022434           80 KD-LHSADIIVEAI   92 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v   92 (297)
                      ++ +++||+||.++
T Consensus        69 ~~Al~gADfVi~~i   82 (425)
T cd05197          69 EDAIIDADFVINQF   82 (425)
T ss_pred             HHHhCCCCEEEEee
Confidence            76 99999999875

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.68  E-value=0.00044  Score=63.56  Aligned_cols=75  Identities=19%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             cEEEEECCChhHH-HHHHHHHHC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            6 KVMGVVGSGQMGS-GIAQLGVMD-----GLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         6 ~~I~viG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      +||+|||+|..-. .+...|+..     +-+|+++|++ +++++.....+++..    +...        ..-++..++|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~----~~~~--------~~~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMV----KKAG--------LPIKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHH----HhhC--------CCeEEEEeCC
Confidence            4899999998733 344445542     3589999999 788776544444332    2211        0124567788


Q ss_pred             ccc-cCCCcEEEEec
Q 022434           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      .++ +.+||+||.+.
T Consensus        69 ~~~al~gadfVi~~~   83 (419)
T cd05296          69 RREALEGADFVFTQI   83 (419)
T ss_pred             HHHHhCCCCEEEEEE
Confidence            876 89999999876

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.68  E-value=0.00022  Score=62.87  Aligned_cols=89  Identities=11%  Similarity=0.151  Sum_probs=61.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+++++       .+.           .+. .++.++ 
T Consensus       125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~a  185 (304)
T PRK07340        125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAI  185 (304)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHH
Confidence            4789999999999999999865 56 4699999999988877554321       111           112 345554 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      ++++|+||.|.|....    ++..   .+++++.|...
T Consensus       186 v~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~i  216 (304)
T PRK07340        186 PEAVDLVVTATTSRTP----VYPE---AARAGRLVVAV  216 (304)
T ss_pred             hhcCCEEEEccCCCCc----eeCc---cCCCCCEEEec
Confidence            8899999999987553    2321   34666655433

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.67  E-value=9.1e-05  Score=68.44  Aligned_cols=71  Identities=20%  Similarity=0.246  Sum_probs=51.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (297)
                      .++|+|||+|.||..++..|...|. +|+++++++++++.+.+.          .|.           ......+.. .+
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l  240 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE----------FGG-----------EAIPLDELPEAL  240 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH----------cCC-----------cEeeHHHHHHHh
Confidence            4689999999999999999999997 799999999876654211          121           001112333 36


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .++|+||.|++.+.
T Consensus       241 ~~aDvVI~aT~s~~  254 (423)
T PRK00045        241 AEADIVISSTGAPH  254 (423)
T ss_pred             ccCCEEEECCCCCC
Confidence            78999999987543

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.66  E-value=0.00027  Score=62.84  Aligned_cols=101  Identities=16%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCCcE
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDG-------LDVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGT-DAPRRLR   74 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~   74 (297)
                      .||+|+|+ |.+|+.++..|+..+       .+|+++|+++.  .++..               .+.-.+.. ....++.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~---------------~~Dl~d~~~~~~~~~~   67 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGV---------------VMELQDCAFPLLKSVV   67 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccce---------------eeehhhccccccCCce
Confidence            48999999 999999999998855       58999999753  12211               00000000 1112344


Q ss_pred             EecCc-cccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           75 CTSNL-KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        75 ~~~~~-~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      ...++ +++++||+||.+..-              +..+.+++...+.+.++++++++.-|.
T Consensus        68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            45564 669999999976521              112234555667777766776554444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.66  E-value=0.00012  Score=60.16  Aligned_cols=92  Identities=23%  Similarity=0.398  Sum_probs=59.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ++|++||+|.+|..+...+...  .++ |.+||++.+++..+.+.          .+.             ...+++++ 
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~~-------------~~~s~ide~   57 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VGR-------------RCVSDIDEL   57 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cCC-------------CccccHHHH
Confidence            3799999999999999876653  354 77999999987765221          111             13367776 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++.|+++||...+. +++-+...|+.  .-+.||. ++..+.
T Consensus        58 ~~~~DlvVEaAS~~A-v~e~~~~~L~~--g~d~iV~-SVGALa   96 (255)
T COG1712          58 IAEVDLVVEAASPEA-VREYVPKILKA--GIDVIVM-SVGALA   96 (255)
T ss_pred             hhccceeeeeCCHHH-HHHHhHHHHhc--CCCEEEE-echhcc
Confidence            689999999986432 23322333333  2355665 455555

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.64  E-value=0.0004  Score=52.52  Aligned_cols=98  Identities=17%  Similarity=0.209  Sum_probs=57.2

Q ss_pred             EEEEECC-ChhHHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc--
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMD-GLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD--   81 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   81 (297)
                      ||+|+|+ |.+|..++..+... ++++..+ +++.++.+.+..          ..+.+.        .-+....+.+.  
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~~~~~~~   62 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLK--------GEVVLELEPEDFE   62 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccc--------cccccccccCChh
Confidence            5899995 99999999999885 8888766 654332222210          011000        00000111122  


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ..++|+||.|+|.+...  ++...+...+.++++++..++++.
T Consensus        63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCcccc
Confidence            24899999999987653  333233344567888887777654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.62  E-value=0.0002  Score=63.89  Aligned_cols=75  Identities=16%  Similarity=0.226  Sum_probs=54.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.+|...+..+.. .+ .+|.+|+|++++++.+.+.+++.+      |.           .+...++.++ 
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g~-----------~v~~~~d~~~a  194 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------GI-----------PVTVARDVHEA  194 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------Cc-----------eEEEeCCHHHH
Confidence            4689999999999998888875 45 579999999999888755443211      11           1234566655 


Q ss_pred             cCCCcEEEEeccccH
Q 022434           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      ++++|+||.+.|...
T Consensus       195 l~~aDiVi~aT~s~~  209 (330)
T PRK08291        195 VAGADIIVTTTPSEE  209 (330)
T ss_pred             HccCCEEEEeeCCCC
Confidence            788999999987643

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.62  E-value=0.00011  Score=58.80  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -++|.|||+|.| |..+|..|.+.|.+|++.+++.+
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~   79 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK   79 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence            478999999997 88899999999999999998854

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.61  E-value=0.0017  Score=48.42  Aligned_cols=89  Identities=20%  Similarity=0.296  Sum_probs=59.4

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc------c-
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL------K-   80 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~-   80 (297)
                      |.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+           .+.|..            ....|.      + 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-----------~~~~~~------------~i~gd~~~~~~l~~   57 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-----------REEGVE------------VIYGDATDPEVLER   57 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-----------HHTTSE------------EEES-TTSHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-----------Hhcccc------------cccccchhhhHHhh
Confidence            5799999999999999999777999999999987776           344421            122221      1 


Q ss_pred             -ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           81 -DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        81 -~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                       .+++++.+|.+.+++.. ...+...+.+..+.-.+++...
T Consensus        58 a~i~~a~~vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   58 AGIEKADAVVILTDDDEE-NLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             TTGGCESEEEEESSSHHH-HHHHHHHHHHHTTTSEEEEEES
T ss_pred             cCccccCEEEEccCCHHH-HHHHHHHHHHHCCCCeEEEEEC
Confidence             26789999999887654 3333334455455455665433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.61  E-value=0.00036  Score=61.43  Aligned_cols=76  Identities=16%  Similarity=0.153  Sum_probs=56.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.+|...+..++.- . -+|.+|+|++++.+++.+++++.+      |           -.+...++.++
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~e  178 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEA  178 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHH
Confidence            357899999999999988877653 3 379999999999988765554211      2           12345667766


Q ss_pred             -cCCCcEEEEeccccH
Q 022434           82 -LHSADIIVEAIVESE   96 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~   96 (297)
                       +++||+|+.+.+...
T Consensus       179 av~~aDIV~taT~s~~  194 (301)
T PRK06407        179 ALRDADTITSITNSDT  194 (301)
T ss_pred             HHhcCCEEEEecCCCC
Confidence             899999999987654

>PLN00203 glutamyl-tRNA reductase

Probab=97.61  E-value=0.0001  Score=69.35  Aligned_cols=85  Identities=14%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (297)
                      .++|+|||+|.||..++..|...|. +|++++|+.++++.+.+...         +. .        -.+...++.. .+
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~-~--------i~~~~~~dl~~al  327 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV-E--------IIYKPLDEMLACA  327 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC-c--------eEeecHhhHHHHH
Confidence            4789999999999999999999997 69999999988776532110         10 0        0001112333 37


Q ss_pred             CCCcEEEEeccccH-HHHHHHHHHHH
Q 022434           83 HSADIIVEAIVESE-DVKKKLFSELD  107 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~-~~k~~~~~~l~  107 (297)
                      .++|+||.|++... .+..+.++++.
T Consensus       328 ~~aDVVIsAT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        328 AEADVVFTSTSSETPLFLKEHVEALP  353 (519)
T ss_pred             hcCCEEEEccCCCCCeeCHHHHHHhh
Confidence            88999999975433 23445555543

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=97.58  E-value=0.0022  Score=54.45  Aligned_cols=108  Identities=18%  Similarity=0.230  Sum_probs=74.4

Q ss_pred             cEEe-cCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHH---HhhhcCCC-CeEEEeecCCCC
Q 022434           73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR---LASATSRP-CQVIGMHFMNPP  147 (297)
Q Consensus        73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~---l~~~~~~~-~~~~g~h~~~p~  147 (297)
                      +.++ +|.++++++|++|..+|-... ...+++++.+.+++++||+ ||.++++..   +.+.+.+. ..+...||-.-|
T Consensus       127 vkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP  204 (340)
T TIGR01723       127 LKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP  204 (340)
T ss_pred             ceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence            3444 455669999999999997652 2467888888999999987 777777653   44444322 234455554434


Q ss_pred             CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       148 ~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      ..-..+-++.+ -.+++.++++.++.+..++.++.+
T Consensus       205 gt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~  239 (340)
T TIGR01723       205 EMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKM  239 (340)
T ss_pred             CCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeec
Confidence            32233444444 368899999999999999999876

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.58  E-value=0.00036  Score=60.91  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=37.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~   46 (297)
                      -+++.|||+|.+|++++..|+..|. +|++++|++++.+.+.+
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            3589999999999999999999997 69999999988776643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.57  E-value=0.0013  Score=54.50  Aligned_cols=129  Identities=16%  Similarity=0.205  Sum_probs=74.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC--ccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN--LKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~~   81 (297)
                      -++|.|||+|.+|..-+..|++.|.+|++++.+...  ..        ..+.+.|.+            .+. .+  .++
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~l--------~~l~~~~~i------------~~~~~~~~~~d   66 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--EL--------TLLAEQGGI------------TWLARCFDADI   66 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--HH--------HHHHHcCCE------------EEEeCCCCHHH
Confidence            468999999999999999999999999999886541  11        112333332            221 12  234


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA  159 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~~  159 (297)
                      +.++++||.+.. +.++...+.....    ...+.+...+.            |+.   ..|+.|..  ..++.--+.+.
T Consensus        67 l~~~~lVi~at~-d~~ln~~i~~~a~----~~~ilvn~~d~------------~e~---~~f~~pa~~~~g~l~iaisT~  126 (205)
T TIGR01470        67 LEGAFLVIAATD-DEELNRRVAHAAR----ARGVPVNVVDD------------PEL---CSFIFPSIVDRSPVVVAISSG  126 (205)
T ss_pred             hCCcEEEEECCC-CHHHHHHHHHHHH----HcCCEEEECCC------------ccc---CeEEEeeEEEcCCEEEEEECC
Confidence            789999998854 4444454444332    22333312211            111   23334432  22333335556


Q ss_pred             CCcHHHHHHHHHHHHH
Q 022434          160 DTSDETFRATKALAER  175 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~  175 (297)
                      +.+|.....+++-++.
T Consensus       127 G~sP~la~~lr~~ie~  142 (205)
T TIGR01470       127 GAAPVLARLLRERIET  142 (205)
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            6788777777666554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.56  E-value=0.00023  Score=66.69  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .++++|+|+|.+|.+++..|++.|++|++++|++++.+...+...        ...             ....+..++.+
T Consensus       332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--------~~~-------------~~~~~~~~l~~  390 (477)
T PRK09310        332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--------GKA-------------FPLESLPELHR  390 (477)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------cce-------------echhHhcccCC
Confidence            368999999999999999999999999999999887665422110        000             00122233568


Q ss_pred             CcEEEEeccccH
Q 022434           85 ADIIVEAIVESE   96 (297)
Q Consensus        85 aD~Vi~~v~e~~   96 (297)
                      +|+||.|+|...
T Consensus       391 ~DiVInatP~g~  402 (477)
T PRK09310        391 IDIIINCLPPSV  402 (477)
T ss_pred             CCEEEEcCCCCC
Confidence            999999998765

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.55  E-value=0.00064  Score=60.18  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.++...+..+...  --+|.+|+|++++.+++.+.++       +.+           -.+...++.++
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-----------~~v~~~~~~~~  188 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-----------FAVNTTLDAAE  188 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-----------CcEEEECCHHH
Confidence            357899999999999998877653  2479999999999887754432       112           12344666665


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +++||+|+.+.+....    ++.  .+++++++.|...
T Consensus       189 av~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~i  221 (315)
T PRK06823        189 VAHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAV  221 (315)
T ss_pred             HhcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEec
Confidence             8999999999875443    221  1345666655433

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=97.55  E-value=0.0028  Score=53.66  Aligned_cols=108  Identities=16%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             cEEe-cCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhh---cCCC-CeEEEeecCCCC
Q 022434           73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA---TSRP-CQVIGMHFMNPP  147 (297)
Q Consensus        73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~---~~~~-~~~~g~h~~~p~  147 (297)
                      +.++ +|.++++++|++|..+|-... ...+++++.+.+++++||+ ||.++++..+...   +.+. ..+...||-.-|
T Consensus       129 vkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP  206 (342)
T PRK00961        129 LKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP  206 (342)
T ss_pred             ceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            3444 556669999999999997653 2467888888999999987 7777777544433   3321 224445554434


Q ss_pred             CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       148 ~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      ..-+.+-+-. .-.+++.++++.++.+..++.++.+
T Consensus       207 gt~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~  241 (342)
T PRK00961        207 EMKGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKM  241 (342)
T ss_pred             CCCCceeccc-ccCCHHHHHHHHHHHHHhCCCeeec
Confidence            2222222222 2368899999999999999999876

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.54  E-value=0.00047  Score=66.14  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=61.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc--ccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK--DLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~   83 (297)
                      .+|.|+|+|.+|..+|..|.+.|++|+++|.|+++.+.+           .+.|..      ...+...-.+.++  .++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-----------~~~g~~------~i~GD~~~~~~L~~a~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-----------RERGIR------AVLGNAANEEIMQLAHLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HHCCCe------EEEcCCCCHHHHHhcCcc
Confidence            578999999999999999999999999999999988776           223321      0000000001112  267


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      ++|.++.+++++.+.. .+...+....+.-.|++.
T Consensus       481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR  514 (558)
T ss_pred             ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence            8999999998876533 233334444444455554

>PRK06046 alanine dehydrogenase; Validated

Probab=97.54  E-value=0.00041  Score=61.82  Aligned_cols=93  Identities=16%  Similarity=0.229  Sum_probs=60.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.+|...+..+.. .+. .|.+||+++++.+++.+.+.+.      .+           ..+...++.++
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~  190 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEE  190 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHH
Confidence            35789999999999999988874 343 6889999999888775543211      01           11234566666


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                       ++ +|+|+.|.|....    ++.  .+++++++.|.+..
T Consensus       191 ~l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iG  223 (326)
T PRK06046        191 ACD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIG  223 (326)
T ss_pred             Hhh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecC
Confidence             55 9999999986432    221  13456666555333

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.54  E-value=0.00014  Score=59.89  Aligned_cols=43  Identities=33%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      -+++.|+|+ |.+|..++..|++.|++|++++|+.++++...+.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~   71 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS   71 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            368999996 9999999999999999999999998877665433

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00067  Score=60.03  Aligned_cols=95  Identities=15%  Similarity=0.227  Sum_probs=65.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+.++|||+|.++......+..-  --+|.+|+|+++..+++...+++.       +.          ..+...++.++
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~  191 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE  191 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence            357899999999999999887652  348999999999988875554322       11          12345666665


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+|+.|+|....+    +.  .+++++++-|....+
T Consensus       192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa  226 (330)
T COG2423         192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA  226 (330)
T ss_pred             HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence             89999999999876532    11  245566766654333

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.53  E-value=0.0012  Score=63.76  Aligned_cols=130  Identities=19%  Similarity=0.198  Sum_probs=81.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec---C---c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS---N---L   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~---~   79 (297)
                      .+|.|+|.|.+|..++..|.+.|++++++|.|+++++.+           .+.|..            ....   +   +
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-----------~~~g~~------------v~~GDat~~~~L  457 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLM-----------RKYGYK------------VYYGDATQLELL  457 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH-----------HhCCCe------------EEEeeCCCHHHH
Confidence            579999999999999999999999999999999988766           223321            1111   1   1


Q ss_pred             c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEec
Q 022434           80 K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR  157 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~  157 (297)
                      +  .+++||.+|.+++++... ..+...+.+..+.-.|++...+......+.+        .|...           +++
T Consensus       458 ~~agi~~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~--------~Ga~~-----------vv~  517 (601)
T PRK03659        458 RAAGAEKAEAIVITCNEPEDT-MKIVELCQQHFPHLHILARARGRVEAHELLQ--------AGVTQ-----------FSR  517 (601)
T ss_pred             HhcCCccCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHh--------CCCCE-----------EEc
Confidence            2  267899999999887643 3344445555555567765444322233322        12211           121


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeE
Q 022434          158 GADTSDETFRATKALAERFGKTV  180 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~  180 (297)
                      -  +-+...+.....+..+|..+
T Consensus       518 e--~~es~l~l~~~~L~~lg~~~  538 (601)
T PRK03659        518 E--TFSSALELGRKTLVSLGMHP  538 (601)
T ss_pred             c--HHHHHHHHHHHHHHHcCCCH
Confidence            1  34455666677777777644

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.50  E-value=0.00038  Score=59.90  Aligned_cols=67  Identities=22%  Similarity=0.337  Sum_probs=46.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +||+|+|+ |.||..++..+.+. +++++ ++|+++++....            +.            ..+...+++++ 
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence            58999998 99999999888764 67766 578887543221            00            11224466665 


Q ss_pred             cCCCcEEEEeccccH
Q 022434           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      ++++|+||++.+.+.
T Consensus        58 l~~~DvVid~t~p~~   72 (257)
T PRK00048         58 LADADVLIDFTTPEA   72 (257)
T ss_pred             ccCCCEEEECCCHHH
Confidence            568999998886544

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.50  E-value=0.00022  Score=64.59  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=37.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~   45 (297)
                      -++|.|||+|-||...|.+|+.+| .+|++.+|+.+++..+.
T Consensus       178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La  219 (414)
T COG0373         178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA  219 (414)
T ss_pred             cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            468999999999999999999999 68999999999887764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.47  E-value=0.00051  Score=56.90  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            589999999999999999999997 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.46  E-value=0.00035  Score=56.58  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434            8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         8 I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      |.|+|+ |.+|..++..|.+.|++|+++-|++++++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~   36 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE   36 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc
Confidence            789997 99999999999999999999999998655

...

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.46  E-value=0.00062  Score=60.33  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=55.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|..+..-+..++. .+ -+|.+|+|++++.+++.+.+++       .+           -.+...++.++
T Consensus       127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~  188 (313)
T PF02423_consen  127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEE  188 (313)
T ss_dssp             T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhh
Confidence            35789999999999998887655 44 3799999999988887655432       11           23456677766


Q ss_pred             -cCCCcEEEEeccccH--HHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           82 -LHSADIIVEAIVESE--DVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~--~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+|+.|.+...  .+    +.  .+++++++.|....+
T Consensus       189 av~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs  225 (313)
T PF02423_consen  189 AVRGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGS  225 (313)
T ss_dssp             HHTTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-
T ss_pred             hcccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecC
Confidence             899999999987654  22    11  235667776654444

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.44  E-value=0.00095  Score=59.71  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ++|.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            589999999999999999999998 899999985

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.43  E-value=0.0021  Score=59.93  Aligned_cols=39  Identities=33%  Similarity=0.405  Sum_probs=36.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+|.|+|+|.+|..++..|.+.|++|+++|+++++++.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~   39 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL   39 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence            479999999999999999999999999999999887765

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.43  E-value=0.00029  Score=64.69  Aligned_cols=72  Identities=21%  Similarity=0.226  Sum_probs=51.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (297)
                      -++|.|||+|.||..++..|+..|. ++++++|+.++.+.+.+.+          +.          ......++.. .+
T Consensus       181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~----------~~----------~~~~~~~~l~~~l  240 (414)
T PRK13940        181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF----------RN----------ASAHYLSELPQLI  240 (414)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh----------cC----------CeEecHHHHHHHh
Confidence            3689999999999999999999995 7999999988776653221          10          0001123333 37


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .++|+||.|++.+.
T Consensus       241 ~~aDiVI~aT~a~~  254 (414)
T PRK13940        241 KKADIIIAAVNVLE  254 (414)
T ss_pred             ccCCEEEECcCCCC
Confidence            78999999886543

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.42  E-value=0.0062  Score=59.75  Aligned_cols=95  Identities=14%  Similarity=0.073  Sum_probs=71.2

Q ss_pred             EEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCC-CCeEEEeecCCCCCCCc------------e
Q 022434           88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMNPPPLMK------------L  152 (297)
Q Consensus        88 Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~p~~~~~------------~  152 (297)
                      ||.|+|-.  ...+++.++.+.++++++|...+|+-.  ...+.+.+.. ..+|+|.||+..+...+            .
T Consensus         1 vila~Pv~--~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAPVA--QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcCHH--HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            57888844  356888999999999999876666543  2455555442 25799999998775433            3


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      +-+++...++++.+++++++++.+|.+++.+.
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~  110 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMS  110 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            55777778899999999999999999998774

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00069  Score=58.74  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|.|+|+|-++++++..|++.|. ++++++|+.++.+++.+.+
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~  170 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF  170 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence            689999999999999999999995 7999999999988775443

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.39  E-value=0.00073  Score=61.59  Aligned_cols=39  Identities=23%  Similarity=0.397  Sum_probs=33.7

Q ss_pred             cEEEEECCChhHHHH-HHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGI-AQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |||.++|+|.||++. ...|.++|++|+++|++++.++.+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL   40 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL   40 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            479999999999955 788999999999999988866665

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.35  E-value=0.00052  Score=62.21  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ..+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            3579999999999999999999999999999998876654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.35  E-value=0.0012  Score=56.38  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG---LDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|.||..++..+.+.+   +++. ++++++++.+.+           ...              ....+++++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~-----------~~~--------------~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL-----------AGR--------------VALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh-----------hcc--------------CcccCCHHH
Confidence            68999999999999999987643   4543 678887655443           111              135566776


Q ss_pred             --cCCCcEEEEeccc
Q 022434           82 --LHSADIIVEAIVE   94 (297)
Q Consensus        82 --~~~aD~Vi~~v~e   94 (297)
                        ....|+|+||...
T Consensus        58 ll~~~~DlVVE~A~~   72 (267)
T PRK13301         58 LLAWRPDLVVEAAGQ   72 (267)
T ss_pred             HhhcCCCEEEECCCH
Confidence              3679999999863

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.34  E-value=0.0042  Score=49.19  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -++|.|||+|.+|...+..|.+.|++|++++++
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            478999999999999999999999999999643

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.29  E-value=0.001  Score=50.28  Aligned_cols=96  Identities=19%  Similarity=0.256  Sum_probs=55.4

Q ss_pred             EEEEEC-CChhHHHHHHHHHHCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec-Ccccc
Q 022434            7 VMGVVG-SGQMGSGIAQLGVMDG-LD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS-NLKDL   82 (297)
Q Consensus         7 ~I~viG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~   82 (297)
                      ||+||| .|++|..+...|+++= ++ +.++.++.+.-......        ..        .......+.+.+ +.+++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEV--------FP--------HPKGFEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHT--------TG--------GGTTTEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehh--------cc--------ccccccceeEeecchhHh
Confidence            799999 6999999999999852 34 44566665211111000        00        000011223333 44558


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +++|+||.|+|...  ..++...+   .+.++.|+.+++..
T Consensus        65 ~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   65 SDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDF  100 (121)
T ss_dssp             TTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTT
T ss_pred             hcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHH
Confidence            99999999998654  33444443   45667777777654

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.27  E-value=0.002  Score=57.64  Aligned_cols=72  Identities=22%  Similarity=0.361  Sum_probs=53.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++++|||+|..+...+..++. .. .+|.+|+|++++.+++.+++++       .+           -.+...++.++ 
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a  190 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA  190 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence            5789999999999888776544 23 4899999999998887655432       11           12345677776 


Q ss_pred             cCCCcEEEEeccc
Q 022434           82 LHSADIIVEAIVE   94 (297)
Q Consensus        82 ~~~aD~Vi~~v~e   94 (297)
                      +++||+|+.+.+.
T Consensus       191 v~~ADIIvtaT~S  203 (346)
T PRK07589        191 VEGADIITTVTAD  203 (346)
T ss_pred             HhcCCEEEEecCC
Confidence            8999999999974

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.26  E-value=0.0023  Score=55.35  Aligned_cols=74  Identities=15%  Similarity=0.313  Sum_probs=44.7

Q ss_pred             cEEEEEC-CChhHHHHHHHHHH-CCCcEE-EEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVM-DGLDVW-LVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||+|+| +|.||..++..+.. .+++++ ++|+. ++....-   .    ..+  .+.        ....+.+.+++++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~---~----~~~--~~~--------~~~gv~~~~d~~~   64 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTD---A----GEL--AGI--------GKVGVPVTDDLEA   64 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCC---H----HHh--cCc--------CcCCceeeCCHHH
Confidence            5899999 59999999999886 578766 56843 3221100   0    000  010        0011345667766


Q ss_pred             c-CCCcEEEEeccccH
Q 022434           82 L-HSADIIVEAIVESE   96 (297)
Q Consensus        82 ~-~~aD~Vi~~v~e~~   96 (297)
                      + ..+|+||++.+...
T Consensus        65 l~~~~DvVIdfT~p~~   80 (266)
T TIGR00036        65 VETDPDVLIDFTTPEG   80 (266)
T ss_pred             hcCCCCEEEECCChHH
Confidence            4 46899999986533

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.25  E-value=0.0037  Score=60.62  Aligned_cols=91  Identities=18%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe---cCc--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT---SNL--   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~--   79 (297)
                      .++|-|+|.|.+|..++..|.+.|++++++|.|+++++.++           +.|..            .+.   ++.  
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~-----------~~g~~------------v~~GDat~~~~  456 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLR-----------KFGMK------------VFYGDATRMDL  456 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHH-----------hcCCe------------EEEEeCCCHHH
Confidence            36799999999999999999999999999999999887762           22321            111   122  


Q ss_pred             -c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           80 -K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        80 -~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +  .++++|.+|.++.++.. ...+...+.+..+.-.+++..
T Consensus       457 L~~agi~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iiaRa  498 (621)
T PRK03562        457 LESAGAAKAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIARA  498 (621)
T ss_pred             HHhcCCCcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEEEE
Confidence             2  26789999999977654 233333444544444566543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.24  E-value=0.00087  Score=46.58  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      ||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.19  E-value=0.002  Score=55.68  Aligned_cols=69  Identities=19%  Similarity=0.345  Sum_probs=44.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL-   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-   82 (297)
                      +||+|||+|.||..++..+.+. +.++.. ++++.. .+...+.        ...             .+...+|++++ 
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~~-------------~~~~~~d~~~l~   59 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LGE-------------AVRVVSSVDALP   59 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hcc-------------CCeeeCCHHHhc
Confidence            5899999999999999998875 566553 344322 1111000        111             12456666664 


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .+.|+|++|.+...
T Consensus        60 ~~~DvVve~t~~~~   73 (265)
T PRK13303         60 QRPDLVVECAGHAA   73 (265)
T ss_pred             cCCCEEEECCCHHH
Confidence            56899999998654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.19  E-value=0.0034  Score=58.51  Aligned_cols=40  Identities=30%  Similarity=0.482  Sum_probs=37.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.+|..++..|.+.|++|+++|.++++.+.+
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~  270 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEEL  270 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            4789999999999999999999999999999999887765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.18  E-value=0.003  Score=59.33  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=37.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a  204 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV  204 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4689999999999999999999999999999999988876

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.18  E-value=0.0012  Score=60.01  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=55.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-C-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-D-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ..++++|||+|.++...+..++. . . -+|.+|+|++++++++.+++.+.+.     |.          ..+...++.+
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~  218 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIE  218 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHH
Confidence            35789999999999999988776 2 2 3899999999998887655442210     10          1245567776


Q ss_pred             c-cCCCcEEEEeccc
Q 022434           81 D-LHSADIIVEAIVE   94 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e   94 (297)
                      + +++||+|+.|.+.
T Consensus       219 eav~~ADIVvtaT~s  233 (379)
T PRK06199        219 EVVRGSDIVTYCNSG  233 (379)
T ss_pred             HHHcCCCEEEEccCC
Confidence            6 8999999998864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.16  E-value=0.0022  Score=57.42  Aligned_cols=33  Identities=33%  Similarity=0.529  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            589999999999999999999998 899999874

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.12  E-value=0.0044  Score=55.59  Aligned_cols=86  Identities=20%  Similarity=0.233  Sum_probs=49.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGT-DAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~-   81 (297)
                      .||+|+|+|.||..++..+... +++|+ +.|++++..+.+.++.  .++.   .+.. +.... .....+.+..+.++ 
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~-~~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVAD-PEREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccC-ccccccccCCceEEcCChhHh
Confidence            5899999999999999987754 56766 4566654433321110  0000   0000 00000 00123455556665 


Q ss_pred             cCCCcEEEEeccccHH
Q 022434           82 LHSADIIVEAIVESED   97 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~   97 (297)
                      ..++|+||+|.+....
T Consensus        76 ~~~vDVVIdaT~~~~~   91 (341)
T PRK04207         76 LEKADIVVDATPGGVG   91 (341)
T ss_pred             hccCCEEEECCCchhh
Confidence            5789999999986654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.11  E-value=0.0011  Score=57.00  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=52.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCc---
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNL---   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---   79 (297)
                      ++|++||.|.+-...-......  |..|..+|+++++.+.+++-+...+.  ++             .++++. .|.   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence            5999999999977665554444  45788999999988877554442211  11             222332 222   


Q ss_pred             -cccCCCcEEEEeccc--cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           80 -KDLHSADIIVEAIVE--SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 -~~~~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                       .+++++|+|+.+.--  +.+-|++++..|.+.++++++++
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~  227 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV  227 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence             236789999987632  33358999999999999998766

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.10  E-value=0.01  Score=55.33  Aligned_cols=38  Identities=37%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |..+.++|.|+|+|..|.++|..|++.|++|+++|++.
T Consensus         1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            43345799999999999999999999999999999985

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.10  E-value=0.0026  Score=55.21  Aligned_cols=70  Identities=23%  Similarity=0.342  Sum_probs=51.4

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|.|||.|. +|.++|..|...|..|+++++....++.                                     .++
T Consensus       158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~-------------------------------------~~~  200 (286)
T PRK14175        158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMAS-------------------------------------YLK  200 (286)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHH-------------------------------------HHh
Confidence            47999999988 9999999999999999999875422211                                     145


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +||+||.+++-..-+..       +.++++++++.
T Consensus       201 ~ADIVIsAvg~p~~i~~-------~~vk~gavVID  228 (286)
T PRK14175        201 DADVIVSAVGKPGLVTK-------DVVKEGAVIID  228 (286)
T ss_pred             hCCEEEECCCCCcccCH-------HHcCCCcEEEE
Confidence            89999999975432222       24566777663

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.09  E-value=0.0051  Score=53.74  Aligned_cols=95  Identities=18%  Similarity=0.246  Sum_probs=55.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |+++ .||+|||+|.+|..+...+.+ .+.++. ++|+++++....  .       ..+.|.-            ...++
T Consensus         1 ~m~k-lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla--~-------A~~~Gi~------------~~~~~   58 (302)
T PRK08300          1 MMSK-LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLA--R-------ARRLGVA------------TSAEG   58 (302)
T ss_pred             CCCC-CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHH--H-------HHHcCCC------------cccCC
Confidence            5544 589999999999997777765 356766 678988643211  0       0223321            11233


Q ss_pred             ccc------cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434           79 LKD------LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        79 ~~~------~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      ++.      ..+.|+|+++.+....  .+....   ....++.++.+++.
T Consensus        59 ie~LL~~~~~~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA  103 (302)
T PRK08300         59 IDGLLAMPEFDDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPA  103 (302)
T ss_pred             HHHHHhCcCCCCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCcc
Confidence            333      2568999999987554  223222   23345555556553

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.07  E-value=0.00081  Score=58.60  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=36.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|+|+|-.+++++..|++.|. +++++||+.++.+.+.+.
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~  170 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV  170 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence            689999999999999999999996 799999999887766433

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.03  E-value=0.0047  Score=43.56  Aligned_cols=32  Identities=41%  Similarity=0.581  Sum_probs=29.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDT   36 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~~~d~   36 (297)
                      .++++|+|+|.+|.+++..+.+. +.+|.+||+
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            47899999999999999999998 578999986

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.02  E-value=0.0017  Score=54.74  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc---EEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~---V~~~d~~   37 (297)
                      ++|.|+|+|.+|+++|..|...|..   ++++||+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            6899999999999999999999974   9999999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.01  E-value=0.0031  Score=49.07  Aligned_cols=31  Identities=35%  Similarity=0.436  Sum_probs=29.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      +|.|||+|.+|+.++..|+..|+ +++++|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998 69999977

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.99  E-value=0.015  Score=48.67  Aligned_cols=128  Identities=15%  Similarity=0.096  Sum_probs=72.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCc--c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNL--K   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--~   80 (297)
                      -++|.|||.|.++..=+..|++.|.+|+++.++-. .+..           +.+.|.+            ++. .++  +
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i------------~~~~r~~~~~   81 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNL------------KLIKGNYDKE   81 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCE------------EEEeCCCChH
Confidence            36899999999999999999999999999976532 1211           1333432            221 222  3


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRG  158 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~  158 (297)
                      ++.++++||.|+. +.++-+.+.    ..++...+++.+...            |..   ..|+.|..  ..++.--+.+
T Consensus        82 dl~g~~LViaATd-D~~vN~~I~----~~a~~~~~lvn~vd~------------p~~---~dFi~PAiv~rg~l~IaIST  141 (223)
T PRK05562         82 FIKDKHLIVIATD-DEKLNNKIR----KHCDRLYKLYIDCSD------------YKK---GLCIIPYQRSTKNFVFALNT  141 (223)
T ss_pred             HhCCCcEEEECCC-CHHHHHHHH----HHHHHcCCeEEEcCC------------ccc---CeEEeeeEEecCCEEEEEEC
Confidence            4889999999865 454444443    344332333322211            111   23444542  2233334555


Q ss_pred             CCCcHHHHHHHHHHHHH
Q 022434          159 ADTSDETFRATKALAER  175 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~  175 (297)
                      .+.+|.....+++-++.
T Consensus       142 ~G~sP~lar~lR~~ie~  158 (223)
T PRK05562        142 KGGSPKTSVFIGEKVKN  158 (223)
T ss_pred             CCcCcHHHHHHHHHHHH
Confidence            56677766666655543

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.99  E-value=0.0037  Score=46.85  Aligned_cols=80  Identities=19%  Similarity=0.379  Sum_probs=52.6

Q ss_pred             cEEEEEC----CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVG----SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||    -+..|.-+...|.++|++|+.++...+.+                             ..+.+..++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5899999    58999999999999999999998775322                             11245666665


Q ss_pred             c-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 L-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      . ...|+++.++|.+.  ..++++++.+.- ...+++
T Consensus        52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~g-~~~v~~   85 (116)
T PF13380_consen   52 IPEPIDLAVVCVPPDK--VPEIVDEAAALG-VKAVWL   85 (116)
T ss_dssp             CSST-SEEEE-S-HHH--HHHHHHHHHHHT--SEEEE
T ss_pred             CCCCCCEEEEEcCHHH--HHHHHHHHHHcC-CCEEEE
Confidence            4 68999999998543  446777766542 344444

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.96  E-value=0.0028  Score=55.82  Aligned_cols=91  Identities=30%  Similarity=0.317  Sum_probs=64.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -+++.|.|.|-.|+++|..+...|.+|.+++.+|-++-.+                        ..+-+.+..-.++++.
T Consensus       209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~  264 (420)
T COG0499         209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKT  264 (420)
T ss_pred             CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhc
Confidence            3678899999999999999999999999999999653222                        1122345555555788


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +|++|.+.-..-.+..+-+.    .++.++|++ |.....
T Consensus       265 gDifiT~TGnkdVi~~eh~~----~MkDgaIl~-N~GHFd  299 (420)
T COG0499         265 GDIFVTATGNKDVIRKEHFE----KMKDGAILA-NAGHFD  299 (420)
T ss_pred             CCEEEEccCCcCccCHHHHH----hccCCeEEe-cccccc
Confidence            99999998765444444333    356777776 665443

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.96  E-value=0.0054  Score=53.93  Aligned_cols=41  Identities=32%  Similarity=0.392  Sum_probs=36.1

Q ss_pred             CCC-CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            1 MEE-KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         1 M~~-~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |+. ..++|+|-|+ |.+|+.|...|+++||.|...-|+++..
T Consensus         1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~   43 (327)
T KOG1502|consen    1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDE   43 (327)
T ss_pred             CCCCCCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchh
Confidence            443 4679999999 9999999999999999999999998863

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.96  E-value=0.003  Score=55.72  Aligned_cols=67  Identities=12%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDP-DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|+||..++..+.++ +++++ ++|+++ +++..             ..+.             ....+.++
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~v-------------~~~~d~~e   56 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETPV-------------YAVADDEK   56 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCCc-------------cccCCHHH
Confidence            36999999999999999988765 78877 579985 32210             0111             11223333


Q ss_pred             -cCCCcEEEEeccccHH
Q 022434           82 -LHSADIIVEAIVESED   97 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~   97 (297)
                       +.++|+|+.|.|....
T Consensus        57 ~l~~iDVViIctPs~th   73 (324)
T TIGR01921        57 HLDDVDVLILCMGSATD   73 (324)
T ss_pred             hccCCCEEEEcCCCccC
Confidence             5679999999987654

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.93  E-value=0.0066  Score=61.56  Aligned_cols=75  Identities=12%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-Cc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDG-LD-------------VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDA   69 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G-~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   69 (297)
                      .+++|+|||+|.||...|..|++.. ++             |++.|++.++++++.+..         .+.         
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~~---------  629 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------ENA---------  629 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CCC---------
Confidence            4679999999999999999998753 34             999999988776552210         010         


Q ss_pred             CCCcEE-ecCccc----cCCCcEEEEeccccHH
Q 022434           70 PRRLRC-TSNLKD----LHSADIIVEAIVESED   97 (297)
Q Consensus        70 ~~~i~~-~~~~~~----~~~aD~Vi~~v~e~~~   97 (297)
                       .-+.. .+|.++    ++++|+||.|+|....
T Consensus       630 -~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H  661 (1042)
T PLN02819        630 -EAVQLDVSDSESLLKYVSQVDVVISLLPASCH  661 (1042)
T ss_pred             -ceEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence             01122 234333    3679999999998654

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.92  E-value=0.00066  Score=62.02  Aligned_cols=37  Identities=35%  Similarity=0.592  Sum_probs=31.9

Q ss_pred             EEEECCChhHHHHHHHHHHCC-C-cEEEEeCCHHHHHHH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDG-L-DVWLVDTDPDALVRA   44 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~   44 (297)
                      |.|+|+|.+|+.++..|++.+ + +|++.||+.+++++.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~   39 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERL   39 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH
Confidence            789999999999999999987 4 899999999988776

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.90  E-value=0.082  Score=46.10  Aligned_cols=41  Identities=27%  Similarity=0.367  Sum_probs=36.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      +-.+++|+|+|.+|.+.++-...+|. +++.+|.|+++.+.+
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~a  233 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKA  233 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHH
Confidence            34689999999999999999999885 799999999998877

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.89  E-value=0.054  Score=47.28  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=83.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      +-++|+|+|+|-+| .||..+++ -|++|+++|++..+-+++.+          ..                        
T Consensus       181 pG~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea~~----------~L------------------------  225 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEAIK----------SL------------------------  225 (360)
T ss_pred             CCcEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHHHH----------hc------------------------
Confidence            45789999998888 45555555 59999999999755444411          12                        


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCC-------CCCCCceEEE
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMN-------PPPLMKLVEV  155 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~-------p~~~~~~vei  155 (297)
                       +||+.|.+.- +.+..+.+...+.-.  .+++  +|-+..+.+.+...+....+++-+-.-.       .|.....+.|
T Consensus       226 -GAd~fv~~~~-d~d~~~~~~~~~dg~--~~~v--~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I  299 (360)
T KOG0023|consen  226 -GADVFVDSTE-DPDIMKAIMKTTDGG--IDTV--SNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSI  299 (360)
T ss_pred             -CcceeEEecC-CHHHHHHHHHhhcCc--ceee--eeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEE
Confidence             3555555542 222222222221110  1111  1224445555555554444443332211       1222334556


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeE-EEeccchhhhHHHHHHHHHHHHHHHHHcCCC
Q 022434          156 IRGADTSDETFRATKALAERFGKTV-VCSQDYAGFIVNRILMPMINEAFFTLYTGVA  211 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~-i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~  211 (297)
                      ..+.-++....+.+.+|+.+-.-++ +.+-          -...+|||+..+++|.+
T Consensus       300 ~GS~vG~~ket~E~Ldf~a~~~ik~~IE~v----------~~~~v~~a~erm~kgdV  346 (360)
T KOG0023|consen  300 KGSIVGSRKETQEALDFVARGLIKSPIELV----------KLSEVNEAYERMEKGDV  346 (360)
T ss_pred             EeeccccHHHHHHHHHHHHcCCCcCceEEE----------ehhHHHHHHHHHHhcCe
Confidence            6666677777777778877644333 2211          12337888888888754

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.88  E-value=0.019  Score=51.73  Aligned_cols=38  Identities=34%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      +|.|+|+|.+|...+..+...|. +|++.|+++++++.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A  209 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELA  209 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH
Confidence            79999999999998888888884 677889999999887

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.86  E-value=0.0046  Score=53.83  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -++|.|||.|. .|+++|..|...|..|+++++..
T Consensus       159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t  193 (283)
T PRK14192        159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT  193 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            47899999997 99999999999999999999743

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.034  Score=46.16  Aligned_cols=179  Identities=12%  Similarity=0.159  Sum_probs=98.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ...|++||.|..|........+.++....+ .+++...+.+           .+.-..             ...+.+. .
T Consensus        10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~L-----------aE~~~a-------------~p~d~~~~a   65 (289)
T COG5495          10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNL-----------AETYVA-------------PPLDVAKSA   65 (289)
T ss_pred             eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhc-----------hhccCC-------------CccchhhCh
Confidence            357999999999999776666665555433 4555544332           111000             0111222 3


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCC-CeEEEeecCCCCC-----CCceE-EE
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRP-CQVIGMHFMNPPP-----LMKLV-EV  155 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h~~~p~~-----~~~~v-ei  155 (297)
                      +-.+++|..+|++.-  ..+..  ...-.+++|++.++...... |...+.+. .--..+||..--.     ..++- .+
T Consensus        66 el~~~vfv~vpd~~~--s~vaa--~~~~rpg~iv~HcSga~~~~-il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~  140 (289)
T COG5495          66 ELLLLVFVDVPDALY--SGVAA--TSLNRPGTIVAHCSGANGSG-ILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTI  140 (289)
T ss_pred             hhhceEEecchHHHH--HHHHH--hcccCCCeEEEEccCCCchh-hhhhhhhcCCcceeecccccccCCHHHHHhCcccE
Confidence            346788888886632  22222  23446888888654433333 33333322 2235566632111     11111 12


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-------hhHHHHHHHHHHHHHHHHHcCCCC
Q 022434          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG-------FIVNRILMPMINEAFFTLYTGVAT  212 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-------~i~nri~~~~~~Ea~~l~~~g~~~  212 (297)
                      +....++.--+..++.+...+|.+++.+.+...       -.+.+.+...+.++..++...+.|
T Consensus       141 ~~i~eaD~~g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~D  204 (289)
T COG5495         141 FGITEADDVGYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDD  204 (289)
T ss_pred             EEeecccccccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence            233335566667778899999999998865432       144555667778888888764444

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.84  E-value=0.026  Score=47.70  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=29.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ||.|||+|..|+.++..|+..|+ +++++|.|.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999997 788998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.84  E-value=0.0015  Score=60.20  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            589999999999999999999999999999875

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.83  E-value=0.011  Score=55.53  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...+..+...|..|+++|+++++++.+
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a  203 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  203 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999987665

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.83  E-value=0.0057  Score=52.99  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      +++.|+|+|-.+++++..|++.|. +|++++|++++.+.+
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            479999999999999999999997 599999999877665

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.80  E-value=0.0057  Score=53.47  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=31.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      +++.|+|+|..+++++..|+..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            589999999999999999999996 8999999964

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.79  E-value=0.0026  Score=55.77  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~   39 (297)
                      .+++.|+|+|..|++++..|+..|.+ |++++|+++
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~  161 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD  161 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence            35789999999999999999999986 999999973

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=96.78  E-value=0.092  Score=46.32  Aligned_cols=165  Identities=19%  Similarity=0.196  Sum_probs=89.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---hhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLS---QAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~i~~~~~~~   80 (297)
                      -.+|+|+|+|.+|.+-.+.+..+|. .++.+|+++++++.+           .+.|+..   +.+.+.      +..-..
T Consensus       186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A-----------~~fGAT~~vn~~~~~~------vv~~i~  248 (366)
T COG1062         186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELA-----------KKFGATHFVNPKEVDD------VVEAIV  248 (366)
T ss_pred             CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHH-----------HhcCCceeecchhhhh------HHHHHH
Confidence            3589999999999999999999886 688899999999887           5566531   000000      000001


Q ss_pred             c-cC-CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--H-HHHhhhcCCCCeEEEeecCCCCCCCceEEE
Q 022434           81 D-LH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--I-TRLASATSRPCQVIGMHFMNPPPLMKLVEV  155 (297)
Q Consensus        81 ~-~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~-~~l~~~~~~~~~~~g~h~~~p~~~~~~vei  155 (297)
                      + .. ++|.+|+++-.... .+..+....   +.+..++..-....  + ....+.... ..+.| .+            
T Consensus       249 ~~T~gG~d~~~e~~G~~~~-~~~al~~~~---~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~G-s~------------  310 (366)
T COG1062         249 ELTDGGADYAFECVGNVEV-MRQALEATH---RGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKG-SA------------  310 (366)
T ss_pred             HhcCCCCCEEEEccCCHHH-HHHHHHHHh---cCCeEEEEecCCCCceeecChHHeecc-ceEEE-Ee------------
Confidence            1 12 79999999875432 333333222   23333322211111  0 000111111 11122 12            


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCC
Q 022434          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVA  211 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~  211 (297)
                       .|..-.+..+.++.+++.+ |+-++     ..++..++-..-+|||+..+.+|..
T Consensus       311 -~G~~~p~~diP~lv~~y~~-Gkl~~-----d~lvt~~~~Le~INeaf~~m~~G~~  359 (366)
T COG1062         311 -FGGARPRSDIPRLVDLYMA-GKLPL-----DRLVTHTIPLEDINEAFDLMHEGKS  359 (366)
T ss_pred             -ecCCccccchhHHHHHHHc-CCCch-----hHHhhccccHHHHHHHHHHHhCCce
Confidence             2222233344555555543 44332     1456667778889999999998853

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.78  E-value=0.0015  Score=59.53  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |+.+...|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            655556799999999999999999999999999998753

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.76  E-value=0.0023  Score=57.66  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            689999999999999999999997 788999875

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.76  E-value=0.0019  Score=59.00  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |++ ..+|.|||+|..|..+|..|++.|++|+++|++++
T Consensus         1 ~~~-~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          1 MTK-VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCC-CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            553 46899999999999999999999999999998864

>PLN00016 RNA-binding protein; Provisional

Probab=96.73  E-value=0.0082  Score=54.68  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             CcEEEEE----CC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVV----GS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~vi----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .++|.|+    |+ |.+|..++..|++.||+|++++|+++.
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            4689999    76 999999999999999999999998764

>PRK06153 hypothetical protein; Provisional

Probab=96.71  E-value=0.0059  Score=54.94  Aligned_cols=32  Identities=28%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|+|||+|..|+.++..|++.|. +++++|.+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            589999999999999999999997 89999876

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.71  E-value=0.018  Score=51.41  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=60.5

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ..||+|||+|.+ +...+..+.+.+.   -|.++|+++++++.+.+.          .|.-            ...+|++
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~~------------~~~~~~~   60 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGIA------------KAYTDLE   60 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCCC------------cccCCHH
Confidence            469999999855 4567878888763   366889999987766321          1210            2556777


Q ss_pred             c-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           81 D-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      + ++  +.|+|+.++|.+... ..+...|+.   ...|++--.-+.+++
T Consensus        61 ~ll~~~~iD~V~Iatp~~~H~-e~~~~AL~a---GkhVl~EKPla~t~~  105 (342)
T COG0673          61 ELLADPDIDAVYIATPNALHA-ELALAALEA---GKHVLCEKPLALTLE  105 (342)
T ss_pred             HHhcCCCCCEEEEcCCChhhH-HHHHHHHhc---CCEEEEcCCCCCCHH
Confidence            6 44  379999999988863 223333332   345666444444443

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.69  E-value=0.0027  Score=56.37  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=32.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |+|.|.|+ |.+|+.++..|.+.||+|++.+|++++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            37999997 9999999999999999999999997643

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.68  E-value=0.037  Score=45.97  Aligned_cols=132  Identities=21%  Similarity=0.242  Sum_probs=76.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -++|.|||.|..|..=+..|++.|-+|+++..+.  ...+..        +.+.+.+.         .+.-.-+.+.+.+
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~--------~~~~~~i~---------~~~~~~~~~~~~~   72 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKA--------LIEEGKIK---------WIEREFDAEDLDD   72 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHH--------HHHhcCcc---------hhhcccChhhhcC
Confidence            4689999999999999999999999999998765  222221        23333221         1111223344667


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecCCCCc
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGADTS  162 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~~~~~  162 (297)
                      +++||.++.+ .++.+.++....+    ..+++ |...           .|..   ..|+.|..  ..++.--+.+.+.+
T Consensus        73 ~~lviaAt~d-~~ln~~i~~~a~~----~~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s  132 (210)
T COG1648          73 AFLVIAATDD-EELNERIAKAARE----RRILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKS  132 (210)
T ss_pred             ceEEEEeCCC-HHHHHHHHHHHHH----hCCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCC
Confidence            9999998764 5555556554433    23333 3321           1221   34444542  23344345555567


Q ss_pred             HHHHHHHHHHHHH
Q 022434          163 DETFRATKALAER  175 (297)
Q Consensus       163 ~~~~~~~~~ll~~  175 (297)
                      |.....+++-.+.
T Consensus       133 P~la~~ir~~Ie~  145 (210)
T COG1648         133 PVLARLLREKIEA  145 (210)
T ss_pred             hHHHHHHHHHHHH
Confidence            7776666655554

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.68  E-value=0.0073  Score=51.77  Aligned_cols=47  Identities=23%  Similarity=0.308  Sum_probs=41.9

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS   50 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~   50 (297)
                      ..+++.|-|+ +.+|..+|..|++.|++|+++.|++++++++.+.+++
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~   52 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED   52 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence            3567888899 9999999999999999999999999999988776654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.67  E-value=0.0088  Score=50.89  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~   40 (297)
                      .+|.|+|+|.+|+.+|..|+.+|. +++++|.+.-.
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            589999999999999999999996 78898877543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07045 putative monooxygenase; Reviewed

Probab=96.65  E-value=0.0025  Score=58.20  Aligned_cols=40  Identities=25%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      |++...+|.|||+|..|...|..|+++|++|+++|+.++.
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            6655678999999999999999999999999999987653

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.64  E-value=0.066  Score=47.28  Aligned_cols=32  Identities=28%  Similarity=0.559  Sum_probs=29.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT   33 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence            58999999999999999999997 799999764

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.63  E-value=0.0036  Score=56.71  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            589999999999999999999996 89999987

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=96.60  E-value=0.0034  Score=53.26  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=30.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-----------CcEEEEeCCH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDG-----------LDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~   38 (297)
                      +-.+|.|||+|..|+.++..|++.|           .+++++|.|.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            3468999999999999999999874           2899999764

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK06847 hypothetical protein; Provisional

Probab=96.60  E-value=0.0029  Score=57.40  Aligned_cols=38  Identities=34%  Similarity=0.402  Sum_probs=34.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |. +.++|.|||+|.-|...|..|++.|++|++++++++
T Consensus         1 m~-~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          1 MA-AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             CC-CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            54 467899999999999999999999999999998754

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.60  E-value=0.0035  Score=57.09  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|..|+.++..|+.+|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999999999999999999998 79999988

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.58  E-value=0.0041  Score=52.50  Aligned_cols=33  Identities=36%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999997 788997653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.58  E-value=0.015  Score=50.63  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=46.5

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+|+|||+|.+|..++..+.+ .++++. ++|+++++.....         ..+.|.-            ...++.+. +
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~---------A~~~Gi~------------~~~~~~e~ll   60 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR---------ARELGVK------------TSAEGVDGLL   60 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH---------HHHCCCC------------EEECCHHHHh
Confidence            489999999999988776664 467766 6788887532110         0223321            23345554 3


Q ss_pred             --CCCcEEEEeccccHH
Q 022434           83 --HSADIIVEAIVESED   97 (297)
Q Consensus        83 --~~aD~Vi~~v~e~~~   97 (297)
                        .+.|+|+.+.|...+
T Consensus        61 ~~~dIDaV~iaTp~~~H   77 (285)
T TIGR03215        61 ANPDIDIVFDATSAKAH   77 (285)
T ss_pred             cCCCCCEEEECCCcHHH
Confidence              368999999998765

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.58  E-value=0.013  Score=49.06  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~   38 (297)
                      -++|+|.|.|++|..+|..|.+.|.. |.+.|.+.
T Consensus        23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            46999999999999999999999884 55678876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.56  E-value=0.033  Score=51.92  Aligned_cols=39  Identities=28%  Similarity=0.202  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.-..++|.|+|+|.+|.++|..|++.|++|+++|++..
T Consensus         1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            554567899999999999999999999999999998754

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.56  E-value=0.0092  Score=53.42  Aligned_cols=143  Identities=22%  Similarity=0.224  Sum_probs=75.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC-cc
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDV---WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN-LK   80 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~   80 (297)
                      ++|+|+|+ |..|..+...|+++||++   ..+.++.+.-+..            ..+.          ..+.+.+. ..
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l------------~~~g----------~~i~v~d~~~~   59 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL------------SFKG----------KELKVEDLTTF   59 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee------------eeCC----------ceeEEeeCCHH
Confidence            58999999 999999999999999864   5554443221111            0000          11223221 12


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce--EEEecC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--VEVIRG  158 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--vei~~~  158 (297)
                      +++++|+||+|+|....  .++..++   ...+++|+++++....+.   .  .|   .++.-+++..+...  -.++..
T Consensus        60 ~~~~vDvVf~A~g~g~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~--~p---~~lpevn~~~i~~~~~~~iVan  126 (334)
T PRK14874         60 DFSGVDIALFSAGGSVS--KKYAPKA---AAAGAVVIDNSSAFRMDP---D--VP---LVVPEVNPEALAEHRKKGIIAN  126 (334)
T ss_pred             HHcCCCEEEECCChHHH--HHHHHHH---HhCCCEEEECCchhhcCC---C--CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence            36789999999986543  3344333   234567776776543221   0  11   22222222211111  126666


Q ss_pred             CCCcHHH-HHHHHHHHHHcCCeEEEe
Q 022434          159 ADTSDET-FRATKALAERFGKTVVCS  183 (297)
Q Consensus       159 ~~~~~~~-~~~~~~ll~~lg~~~i~v  183 (297)
                      +++.+.. .-.+.++.+..+-..+.+
T Consensus       127 p~C~~t~~~l~l~pL~~~~~i~~i~v  152 (334)
T PRK14874        127 PNCSTIQMVVALKPLHDAAGIKRVVV  152 (334)
T ss_pred             ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence            6555544 334556666666554443

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.56  E-value=0.006  Score=55.43  Aligned_cols=98  Identities=12%  Similarity=0.179  Sum_probs=57.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD   81 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~   81 (297)
                      .+||+|+|+ |..|..+...|..+ +++|+.+.++.++-+..    ......+. .+.           ..... .+.++
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i----~~~~~~l~-~~~-----------~~~~~~~~~~~  101 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF----GSVFPHLI-TQD-----------LPNLVAVKDAD  101 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc----hhhCcccc-Ccc-----------ccceecCCHHH
Confidence            468999999 99999999999998 78999987754322111    00000000 000           00011 11223


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++|+||.|+|...  -.++...+    ..++.|+.+++..-
T Consensus       102 ~~~~DvVf~Alp~~~--s~~i~~~~----~~g~~VIDlSs~fR  138 (381)
T PLN02968        102 FSDVDAVFCCLPHGT--TQEIIKAL----PKDLKIVDLSADFR  138 (381)
T ss_pred             hcCCCEEEEcCCHHH--HHHHHHHH----hCCCEEEEcCchhc
Confidence            678999999998753  23444433    34566776776543

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.56  E-value=0.0034  Score=42.14  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             EECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434           10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus        10 viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |||+|.-|...|..|++.|++|+++|+++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            799999999999999999999999998753

...

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.55  E-value=0.0087  Score=50.44  Aligned_cols=44  Identities=27%  Similarity=0.268  Sum_probs=37.6

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+...++|.|.|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            5445578999997 9999999999999999999999998766543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.54  E-value=0.014  Score=55.43  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++++|+.++++.+.+
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~  122 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ  122 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            56888988 999999999999999999999999987765533

>PRK08223 hypothetical protein; Validated

Probab=96.54  E-value=0.0036  Score=54.30  Aligned_cols=33  Identities=18%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.|.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            589999999999999999999997 788998764

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.54  E-value=0.0081  Score=52.06  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=51.3

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||.|.. |.++|..|.+.|..|+++....                                      .++.+ +
T Consensus       158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~  199 (285)
T PRK14189        158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHT  199 (285)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHh
Confidence            478999999777 9999999999999999875432                                      22332 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +.||+||.+++...     ++..  ++++++++++.
T Consensus       200 ~~ADIVV~avG~~~-----~i~~--~~ik~gavVID  228 (285)
T PRK14189        200 RQADIVVAAVGKRN-----VLTA--DMVKPGATVID  228 (285)
T ss_pred             hhCCEEEEcCCCcC-----ccCH--HHcCCCCEEEE
Confidence            78999999998543     2221  56778887763

>PRK11579 putative oxidoreductase; Provisional

Probab=96.54  E-value=0.038  Score=49.69  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=47.3

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEEKMKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.. ..||+|||+|.+|.. .+..+.. .+++++ ++|+++++...             +.+            ...+.+
T Consensus         1 m~~-~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~   54 (346)
T PRK11579          1 MSD-KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVS   54 (346)
T ss_pred             CCC-cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeC
Confidence            543 358999999999984 4555554 467776 78998764321             111            113556


Q ss_pred             Cccc-cC--CCcEEEEeccccHH
Q 022434           78 NLKD-LH--SADIIVEAIVESED   97 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~   97 (297)
                      |+++ ++  +.|+|+.|+|....
T Consensus        55 ~~~ell~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579         55 EPQHLFNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH
Confidence            7776 43  58999999998765

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.51  E-value=0.0035  Score=57.72  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|.+|++.|..|++.|++|+++|++.
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            379999999999999999999999999999975

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=96.51  E-value=0.025  Score=44.32  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CCCcEEE-EeC-CHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVM-DGLDVWL-VDT-DPDALVR   43 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~-~G~~V~~-~d~-~~~~~~~   43 (297)
                      .+|+|+|+|.||+.++..+.. .+.+++. .|+ +++.+..
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~   41 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAH   41 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHH
Confidence            379999999999999998775 4566664 563 5544433

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.49  E-value=0.0045  Score=57.23  Aligned_cols=37  Identities=32%  Similarity=0.409  Sum_probs=33.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4689999999999999999999999999999887643

>PRK05868 hypothetical protein; Validated

Probab=96.48  E-value=0.0035  Score=57.03  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |++|.|||+|..|...|..|+++|++|+++|+.++
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            35899999999999999999999999999998765

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.47  E-value=0.013  Score=49.94  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|..|+.++..|+..|. +++++|.+.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            689999999999999999999996 788998764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.45  E-value=0.0086  Score=56.50  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~   47 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA   47 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            68999999999999999999999999999987654

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.44  E-value=0.015  Score=53.13  Aligned_cols=76  Identities=20%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             CcEEEEECCChhHHHHHHH--HHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQMGSGIAQL--GVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~--l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ..||+|||+|..+.+--..  +.+    .+.++.++|.++++++..    ....++++++-..        .-++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~--------~~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGA--------PVKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCC--------CeEEEEecC
Confidence            4689999999887664332  222    356899999999988743    3334444443221        134567888


Q ss_pred             ccc-cCCCcEEEEec
Q 022434           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      .++ +++||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            876 99999999876

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.43  E-value=0.018  Score=54.19  Aligned_cols=35  Identities=29%  Similarity=0.177  Sum_probs=31.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|..+|..|++.|++|+++|.++.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            46899999999999999999999999999997653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.43  E-value=0.0037  Score=57.16  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ....|.|||+|..|.+.|..|++.|++|+++|+.+
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            34579999999999999999999999999999865

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.42  E-value=0.024  Score=47.77  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEE-EEeC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDT   36 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~-~~d~   36 (297)
                      -++|+|.|.|.+|..+|..|.+.|.+|+ +.|.
T Consensus        31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3689999999999999999999999998 6677

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.41  E-value=0.012  Score=49.96  Aligned_cols=44  Identities=32%  Similarity=0.385  Sum_probs=37.6

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |..+.++|.|+|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~   45 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV   45 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4444578999998 9999999999999999999999998766554

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.41  E-value=0.01  Score=47.02  Aligned_cols=71  Identities=25%  Similarity=0.292  Sum_probs=46.3

Q ss_pred             CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|.|||-+ .+|.+++..|.+.|..|++.+.....+++.                                     ++
T Consensus        36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~-------------------------------------~~   78 (160)
T PF02882_consen   36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEI-------------------------------------TR   78 (160)
T ss_dssp             T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHH-------------------------------------HT
T ss_pred             CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccce-------------------------------------ee
Confidence            4789999996 589999999999999999987654322221                                     46


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .||+||.++...--++.       ++++++++++..
T Consensus        79 ~ADIVVsa~G~~~~i~~-------~~ik~gavVIDv  107 (160)
T PF02882_consen   79 RADIVVSAVGKPNLIKA-------DWIKPGAVVIDV  107 (160)
T ss_dssp             TSSEEEE-SSSTT-B-G-------GGS-TTEEEEE-
T ss_pred             eccEEeeeecccccccc-------ccccCCcEEEec
Confidence            89999999975443322       456788877643

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK07236 hypothetical protein; Provisional

Probab=96.38  E-value=0.0053  Score=56.03  Aligned_cols=35  Identities=26%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46899999999999999999999999999998764

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.38  E-value=0.012  Score=50.95  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|.|||-| .+|.++|..|.+.|..|++++.....+..                                     .++
T Consensus       157 Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~-------------------------------------~~~  199 (285)
T PRK14191        157 GKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSF-------------------------------------YTQ  199 (285)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHH-------------------------------------HHH
Confidence            4789999998 89999999999999999998643322211                                     145


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      .||+||.++.-..-+..       ++++++++++
T Consensus       200 ~ADIvV~AvG~p~~i~~-------~~vk~GavVI  226 (285)
T PRK14191        200 NADIVCVGVGKPDLIKA-------SMVKKGAVVV  226 (285)
T ss_pred             hCCEEEEecCCCCcCCH-------HHcCCCcEEE
Confidence            79999999965433222       3457777765

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=96.36  E-value=0.0042  Score=56.72  Aligned_cols=38  Identities=21%  Similarity=0.374  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |..+...|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            66666789999999999999999999999999999864

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.34  E-value=0.011  Score=51.14  Aligned_cols=90  Identities=23%  Similarity=0.365  Sum_probs=61.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-e---cCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-T---SNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~---~~~~~   81 (297)
                      -+|+|||.|..|.--|.....-|.+|++.|+|.+++..+...                     ...|+.. .   .++++
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee  227 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE  227 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence            479999999999999999999999999999999887665211                     1122222 1   22344


Q ss_pred             -cCCCcEEEEec--cccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 -LHSADIIVEAI--VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 -~~~aD~Vi~~v--~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                       ++.+|+||-+|  |.... -+-+.++.-+.++++++|+
T Consensus       228 ~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         228 AVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             HhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEE
Confidence             88999999877  22211 1234555555667777665

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.33  E-value=0.014  Score=42.64  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +-++|.|||.|.+|..=+..|++.|.+|+++.++.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            35789999999999999999999999999999886

>PRK06753 hypothetical protein; Provisional

Probab=96.32  E-value=0.0049  Score=55.85  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|...|..|++.|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4799999999999999999999999999998865

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.31  E-value=0.022  Score=51.13  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=55.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc--c
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK--D   81 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~   81 (297)
                      +||+|||+ |.+|..++..|..+ +++++.+-.+.+.-+...+.          .+.+.     .. ....+ .+.+  .
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~----------~~~~~-----~~-~~~~~-~~~~~~~   65 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV----------HPHLR-----GL-VDLVL-EPLDPEI   65 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh----------Ccccc-----cc-cCcee-ecCCHHH
Confidence            69999998 99999999999886 67776543332211111100          00000     00 00011 1222  3


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ..++|+|+.|+|....  .++..++   ...++.|+++++....
T Consensus        66 ~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~  104 (343)
T PRK00436         66 LAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRL  104 (343)
T ss_pred             hcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCC
Confidence            5679999999998654  2333333   2346777778876654

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.30  E-value=0.0045  Score=55.16  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=29.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||+|.-|..+|..|+++|++|+++|+++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            699999999999999999999999999998755

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.27  E-value=0.021  Score=44.25  Aligned_cols=70  Identities=29%  Similarity=0.328  Sum_probs=49.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|.|+|- ...|.++|..|.+.|..|++.+.+...++.                                     .++
T Consensus        28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~-------------------------------------~v~   70 (140)
T cd05212          28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS-------------------------------------KVH   70 (140)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH-------------------------------------HHh
Confidence            468889988 566999999999889999888754321211                                     256


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-++.       ++++++++++.
T Consensus        71 ~ADIVvsAtg~~~~i~~-------~~ikpGa~Vid   98 (140)
T cd05212          71 DADVVVVGSPKPEKVPT-------EWIKPGATVIN   98 (140)
T ss_pred             hCCEEEEecCCCCccCH-------HHcCCCCEEEE
Confidence            89999999976533333       45678887763

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.016  Score=48.67  Aligned_cols=40  Identities=28%  Similarity=0.320  Sum_probs=35.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+ |.+|..++..|++.|++|++++|++++++..
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~   46 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA   46 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence            367999987 9999999999999999999999998766554

>PRK06185 hypothetical protein; Provisional

Probab=96.25  E-value=0.0057  Score=56.15  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ...|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            35799999999999999999999999999998753

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.018  Score=48.76  Aligned_cols=44  Identities=20%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             CCCCC--cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKM--KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~--~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+..+  ++|.|.|+ |.+|..+|..|++.|++|+++++++++++..
T Consensus         1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (250)
T PRK12939          1 MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL   47 (250)
T ss_pred             CCCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            44433  78889987 9999999999999999999999998776654

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.22  E-value=0.017  Score=54.35  Aligned_cols=36  Identities=33%  Similarity=0.367  Sum_probs=32.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .++|.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            478999999999999999999999999999987653

>PRK06126 hypothetical protein; Provisional

Probab=96.22  E-value=0.0056  Score=58.58  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=32.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ...+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            345799999999999999999999999999998754

>PRK07877 hypothetical protein; Provisional

Probab=96.20  E-value=0.018  Score=56.45  Aligned_cols=32  Identities=38%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~   38 (297)
                      .+|+|||+| +|+.+|..|+.+|.  +++++|.|.
T Consensus       108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            589999999 89999999999995  899998764

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.20  E-value=0.009  Score=53.23  Aligned_cols=40  Identities=25%  Similarity=0.431  Sum_probs=34.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+ |.||+.++.+|+.. | .++++++|+++++..+
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L  197 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL  197 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence            368999999 89999999999864 5 5899999998877655

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.20  E-value=0.062  Score=47.43  Aligned_cols=144  Identities=19%  Similarity=0.250  Sum_probs=77.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE---ecC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC---TSN   78 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (297)
                      .+|+|+|+ |.+|.-|...|....+.   +.++....+.   .+++        .+.+.          ..+..   ..+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSa---G~~~--------~~f~~----------~~~~v~~~~~~   60 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSA---GKKY--------IEFGG----------KSIGVPEDAAD   60 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccccc---CCcc--------ccccC----------ccccCcccccc
Confidence            58999998 99999999999997654   3344322211   1000        01000          00111   133


Q ss_pred             ccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceE---EE
Q 022434           79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV---EV  155 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v---ei  155 (297)
                      ..+.+++|+++.|.+.+..  +++..++   ...++++++|+|..-.+        ++-.+-+.-.||-++....   -|
T Consensus        61 ~~~~~~~Divf~~ag~~~s--~~~~p~~---~~~G~~VIdnsSa~Rm~--------~DVPLVVPeVN~~~l~~~~~rg~I  127 (334)
T COG0136          61 EFVFSDVDIVFFAAGGSVS--KEVEPKA---AEAGCVVIDNSSAFRMD--------PDVPLVVPEVNPEHLIDYQKRGFI  127 (334)
T ss_pred             ccccccCCEEEEeCchHHH--HHHHHHH---HHcCCEEEeCCcccccC--------CCCCEecCCcCHHHHHhhhhCCCE
Confidence            4446789999999986654  3444433   34578999999865422        1111222223332211111   24


Q ss_pred             ecCCC-CcHHHHHHHHHHHHHcCCeEEEe
Q 022434          156 IRGAD-TSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       156 ~~~~~-~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      +.++. +.....-.+.++++..+-+-+++
T Consensus       128 ianpNCst~~l~~aL~PL~~~~~i~~v~V  156 (334)
T COG0136         128 IANPNCSTIQLVLALKPLHDAFGIKRVVV  156 (334)
T ss_pred             EECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence            44433 34455666777887777655544

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=96.19  E-value=0.016  Score=50.80  Aligned_cols=101  Identities=27%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++++|+|.|.+|+..|.++...|..|+.||+ .+.....             ..|.             +..+-.+.+..
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~-------------a~gv-------------q~vsl~Eil~~  200 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE-------------AFGV-------------QLVSLEEILPK  200 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH-------------hccc-------------eeeeHHHHHhh
Confidence            6899999999999999999999999999985 4433222             2232             33333334889


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATS  133 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~  133 (297)
                      ||+|-.-+|-.++.+.-+-.+.-..++.+.-|+ |++.   ++...+.+.+.
T Consensus       201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al~  251 (406)
T KOG0068|consen  201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRALD  251 (406)
T ss_pred             cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHHh
Confidence            999998888766644434344444566666444 4442   23345655553

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.17  E-value=0.01  Score=47.53  Aligned_cols=76  Identities=17%  Similarity=0.329  Sum_probs=49.9

Q ss_pred             CCcEEEEECCChhHHHHHHH-HH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE--ecC
Q 022434            4 KMKVMGVVGSGQMGSGIAQL-GV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC--TSN   78 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~-l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~   78 (297)
                      ++.+|.|||+|++|.+++.. +. ++|++++ ++|.+++.+-.-                         .+.+.+  .++
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~-------------------------~~~v~V~~~d~  137 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK-------------------------IGDVPVYDLDD  137 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc-------------------------cCCeeeechHH
Confidence            45689999999999999985 44 6777755 889999744211                         011112  234


Q ss_pred             ccc-cC--CCcEEEEeccccHHHHHHHHHHH
Q 022434           79 LKD-LH--SADIIVEAIVESEDVKKKLFSEL  106 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l  106 (297)
                      ++. ++  +.|+.|.|||...  -|++...|
T Consensus       138 le~~v~~~dv~iaiLtVPa~~--AQ~vad~L  166 (211)
T COG2344         138 LEKFVKKNDVEIAILTVPAEH--AQEVADRL  166 (211)
T ss_pred             HHHHHHhcCccEEEEEccHHH--HHHHHHHH
Confidence            444 44  7899999999654  34554444

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.17  E-value=0.018  Score=49.95  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=51.0

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|.|||-+. +|.++|..|...|..|++++....                                      ++.+ +
T Consensus       159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~  200 (285)
T PRK10792        159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--------------------------------------NLRHHV  200 (285)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--------------------------------------CHHHHH
Confidence            47899999988 899999999999999999975422                                      2222 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +.||+||.++.-..-+..       ++++++++++.
T Consensus       201 ~~ADIvi~avG~p~~v~~-------~~vk~gavVID  229 (285)
T PRK10792        201 RNADLLVVAVGKPGFIPG-------EWIKPGAIVID  229 (285)
T ss_pred             hhCCEEEEcCCCcccccH-------HHcCCCcEEEE
Confidence            689999999943322222       56678887763

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.17  E-value=0.0018  Score=61.78  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=29.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus       339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            589999999999999999999997 68888865

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK07411 hypothetical protein; Validated

Probab=96.14  E-value=0.0095  Score=54.46  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            589999999999999999999997 788998764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.12  E-value=0.0082  Score=46.18  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=29.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            589999999999999999999998 799999763

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=96.11  E-value=0.22  Score=41.12  Aligned_cols=103  Identities=19%  Similarity=0.259  Sum_probs=67.4

Q ss_pred             ecCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhh---hcCCC-CeEEEeecCCCCCCCc
Q 022434           76 TSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLAS---ATSRP-CQVIGMHFMNPPPLMK  151 (297)
Q Consensus        76 ~~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~---~~~~~-~~~~g~h~~~p~~~~~  151 (297)
                      ++|.++++++|+||..+|-.- ..-.++.++.+.+++++|+. ++.+++.+.+..   ...+. ..+-.-|+-.-|...+
T Consensus       131 tddreavedad~iitwlpkg~-~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~vpemkg  208 (343)
T COG4074         131 TDDREAVEDADMIITWLPKGG-VQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGTVPEMKG  208 (343)
T ss_pred             cCcHhhhcCCCeEEEeccCCC-CCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCCCccccC
Confidence            445566999999999998543 23456777777788898886 677888765444   33321 2344455555455555


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i  181 (297)
                      .|-+..|. .++++++.+.++-+......+
T Consensus       209 qvyiaegy-aseeavn~lyelg~karg~af  237 (343)
T COG4074         209 QVYIAEGY-ASEEAVNALYELGEKARGLAF  237 (343)
T ss_pred             cEEEeccc-ccHHHHHHHHHHHHHhhcccc
Confidence            67677665 688888888887766544343

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.10  E-value=0.022  Score=48.58  Aligned_cols=43  Identities=23%  Similarity=0.204  Sum_probs=37.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+++++..+...+.
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~   50 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE   50 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence            367889988 9999999999999999999999999777665443

>PRK07588 hypothetical protein; Provisional

Probab=96.10  E-value=0.0071  Score=55.26  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|..|.+.|..|++.|++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3799999999999999999999999999998754

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.08  E-value=0.027  Score=47.42  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=29.8

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.|+|+ |.+|++++..|.+.|++|++.-|++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~   33 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS   33 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            789998 99999999999999999999999874

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=96.08  E-value=0.0088  Score=53.32  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .|.|||+|..|.++|..|++.|++|+++|++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            3889999999999999999999999999988

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.07  E-value=0.023  Score=52.62  Aligned_cols=67  Identities=19%  Similarity=0.294  Sum_probs=43.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--------C--Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--------G--LD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL   73 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--------G--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i   73 (297)
                      ..+|+|+|+|.+|..++..|.++        |  ++ +.++|++.++....            +            ....
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~------------~------------~~~~   58 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGV------------D------------LPGI   58 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCC------------C------------Cccc
Confidence            35899999999999999877553        3  34 33668886543211            0            0112


Q ss_pred             EEecCccc-cC--CCcEEEEecccc
Q 022434           74 RCTSNLKD-LH--SADIIVEAIVES   95 (297)
Q Consensus        74 ~~~~~~~~-~~--~aD~Vi~~v~e~   95 (297)
                      .+++++++ +.  +.|+|+++++..
T Consensus        59 ~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349         59 LLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             ceeCCHHHHhhCCCCCEEEECCCCc
Confidence            35667766 43  579999998653

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.07  E-value=0.017  Score=51.57  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT   76 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      |+ .+.+|+|+|+ |..|.-+...|.+++|++.   .+ .+.++..+   .        +...        .  ..+.+.
T Consensus         1 m~-~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~---~--------l~~~--------~--~~l~~~   57 (336)
T PRK05671          1 MS-QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGH---S--------VPFA--------G--KNLRVR   57 (336)
T ss_pred             CC-CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCC---e--------eccC--------C--cceEEe
Confidence            54 3479999999 9999999999998888544   33 22221110   0        0000        0  112232


Q ss_pred             c-CccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce--E
Q 022434           77 S-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--V  153 (297)
Q Consensus        77 ~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--v  153 (297)
                      . +..+++++|+||.++|....  ..+..++.   ..++.++.+++..-..      ..|   .++.-+++..+...  -
T Consensus        58 ~~~~~~~~~vD~vFla~p~~~s--~~~v~~~~---~~G~~VIDlS~~fR~~------~~p---l~lPEvn~~~i~~~~~~  123 (336)
T PRK05671         58 EVDSFDFSQVQLAFFAAGAAVS--RSFAEKAR---AAGCSVIDLSGALPSA------QAP---NVVPEVNAERLASLAAP  123 (336)
T ss_pred             eCChHHhcCCCEEEEcCCHHHH--HHHHHHHH---HCCCeEEECchhhcCC------CCC---EEecccCHHHHccccCC
Confidence            2 22236789999999996432  33444332   3467777777755432      111   22222332211110  2


Q ss_pred             EEecCCCCcHHH-HHHHHHHHHHcCC
Q 022434          154 EVIRGADTSDET-FRATKALAERFGK  178 (297)
Q Consensus       154 ei~~~~~~~~~~-~~~~~~ll~~lg~  178 (297)
                      .++..+++.+.. .-.+.++.+.++.
T Consensus       124 ~iIAnPgC~~t~~~laL~PL~~~~~~  149 (336)
T PRK05671        124 FLVSSPSASAVALAVALAPLKGLLDI  149 (336)
T ss_pred             CEEECCCcHHHHHHHHHHHHHHhcCC
Confidence            366666655543 3445666655553

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.05  E-value=0.026  Score=47.58  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=36.3

Q ss_pred             CCCCC--cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKM--KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~--~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ||+.+  ++|.|.|+ |..|..++..|++.|++|++.+|++++.+..
T Consensus         1 ~~~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~   47 (239)
T PRK07666          1 MAQSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAV   47 (239)
T ss_pred             CCccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            54433  57889987 8999999999999999999999998766544

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.04  E-value=0.02  Score=53.57  Aligned_cols=35  Identities=31%  Similarity=0.379  Sum_probs=31.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||.|..|.+.|..|.+.|++|.++|..+.
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   43 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPA   43 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChh
Confidence            46899999999999999999999999999997754

>PRK07538 hypothetical protein; Provisional

Probab=96.04  E-value=0.0077  Score=55.50  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|..+|..|+++|++|+++|+.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            4799999999999999999999999999998764

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.03  E-value=0.07  Score=49.97  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=32.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|+|+|.|.-|.++|..|.+.|++|+++|.++.
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            36899999999999999999999999999998753

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=96.03  E-value=0.0095  Score=54.14  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ...+|+|||+|.+|.+.|..|++.|++|+++|..+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            34689999999999999999999999999999775

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.03  E-value=0.086  Score=49.35  Aligned_cols=130  Identities=17%  Similarity=0.172  Sum_probs=75.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC--ccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN--LKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~~   81 (297)
                      -++|.|||.|.++..=+..|++.|.+|+++.+.-.  +.+        ..+.+.|.+            .+. ..  .++
T Consensus        12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~--~~~--------~~l~~~~~i------------~~~~~~~~~~d   69 (457)
T PRK10637         12 DRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI--PQF--------TAWADAGML------------TLVEGPFDESL   69 (457)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC--HHH--------HHHHhCCCE------------EEEeCCCChHH
Confidence            47899999999999999999999999999965421  111        112334432            222 22  234


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCC--CCCceEEEecCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP--PLMKLVEVIRGA  159 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~--~~~~~vei~~~~  159 (297)
                      ++++++||.|+. |.++.+.+    ...++...+++ |...-           |..   .+|+.|.  ...+++--+.+.
T Consensus        70 l~~~~lv~~at~-d~~~n~~i----~~~a~~~~~lv-N~~d~-----------~~~---~~f~~pa~~~~g~l~iaisT~  129 (457)
T PRK10637         70 LDTCWLAIAATD-DDAVNQRV----SEAAEARRIFC-NVVDA-----------PKA---ASFIMPSIIDRSPLMVAVSSG  129 (457)
T ss_pred             hCCCEEEEECCC-CHHHhHHH----HHHHHHcCcEE-EECCC-----------ccc---CeEEEeeEEecCCEEEEEECC
Confidence            889999888865 44444444    34444444444 33221           111   2344444  223344445666


Q ss_pred             CCcHHHHHHHHHHHHHc
Q 022434          160 DTSDETFRATKALAERF  176 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~l  176 (297)
                      +.+|.....+++-++.+
T Consensus       130 G~sP~~a~~lr~~ie~~  146 (457)
T PRK10637        130 GTSPVLARLLREKLESL  146 (457)
T ss_pred             CCCcHHHHHHHHHHHHh
Confidence            67887777766665543

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=96.03  E-value=0.0077  Score=54.59  Aligned_cols=32  Identities=31%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|.|||+|.+|+++|..|++.|++|+++|+..
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            59999999999999999999999999999864

>PRK08013 oxidoreductase; Provisional

Probab=96.02  E-value=0.0074  Score=55.38  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            4799999999999999999999999999998765

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.027  Score=47.51  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++++.|.|+ |.+|..++..|++.|++|++.+|++++.+..
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   46 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL   46 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4567888887 9999999999999999999999998765544

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.01  E-value=0.0086  Score=54.71  Aligned_cols=33  Identities=33%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ...|.|||+|..|..+|..|+++|++|+++|+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            357999999999999999999999999999998

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.01  E-value=0.23  Score=36.27  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=61.2

Q ss_pred             cEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCc---
Q 022434            6 KVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNL---   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---   79 (297)
                      .+|.-||+|.=  .++..+++  .|.+|+.+|.+++.++.+++...       +.+         ...++++ ..|.   
T Consensus         3 ~~vLDlGcG~G--~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~---------~~~~i~~~~~d~~~~   64 (112)
T PF12847_consen    3 GRVLDLGCGTG--RLSIALARLFPGARVVGVDISPEMLEIARERAA-------EEG---------LSDRITFVQGDAEFD   64 (112)
T ss_dssp             CEEEEETTTTS--HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTT---------TTTTEEEEESCCHGG
T ss_pred             CEEEEEcCcCC--HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcC---------CCCCeEEEECccccC
Confidence            57889999873  23333444  89999999999999888865541       111         1234443 2344   


Q ss_pred             -cccCCCcEEEEec-----cccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           80 -KDLHSADIIVEAI-----VESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        80 -~~~~~aD~Vi~~v-----~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +.....|+|+...     -...+..+.+++.+.+.++++.+++.+
T Consensus        65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence             1245689999876     112234667888888888887766533

...

>PLN03075 nicotianamine synthase; Provisional

Probab=95.98  E-value=0.043  Score=47.92  Aligned_cols=101  Identities=22%  Similarity=0.254  Sum_probs=66.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCc--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNL--   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--   79 (297)
                      .++|..||.|..|..-...++.+  +-.++.+|.+++..+.+++.+.+      +.|         ...++++. .|.  
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g---------L~~rV~F~~~Da~~  188 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD---------LSKRMFFHTADVMD  188 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC---------ccCCcEEEECchhh
Confidence            47899999999877655444443  34699999999998887654321      011         11233442 221  


Q ss_pred             --cccCCCcEEEEeccc--cHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           80 --KDLHSADIIVEAIVE--SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 --~~~~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                        ....+.|+|+..+--  +..-|+.++..+.+.++++.+++.-+
T Consensus       189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence              124678999988521  12347899999999999988777554

>PRK06475 salicylate hydroxylase; Provisional

Probab=95.97  E-value=0.008  Score=55.16  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|...|..|++.|++|+++++.++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            6899999999999999999999999999998764

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.16  Score=45.43  Aligned_cols=42  Identities=21%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~   49 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAE   49 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            357888888 899999999999999999999999988766533

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.97  E-value=0.032  Score=50.21  Aligned_cols=98  Identities=18%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD   81 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~   81 (297)
                      +||+|||+ |.+|..++..|.++ ++++. +++.+.+.-+..    ...      .+.+..     . ..+.+. .+.++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~----~~~------~~~l~~-----~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV----SEV------HPHLRG-----L-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh----HHh------Cccccc-----c-CCceeecCCHHH
Confidence            48999999 99999999999987 67877 556554211111    000      010000     0 011122 13333


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                       .+++|+||.|+|....  .++..++.   ..++.|+.+++..-
T Consensus        65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR  103 (346)
T TIGR01850        65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFR  103 (346)
T ss_pred             hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhh
Confidence             3589999999997653  33433332   34576777776554

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.97  E-value=0.013  Score=53.59  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            589999999999999999999997 789999764

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.96  E-value=0.036  Score=51.21  Aligned_cols=31  Identities=26%  Similarity=0.141  Sum_probs=28.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEE-e
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLV-D   35 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~-d   35 (297)
                      -++|+|.|.|++|...|..|...|..|+.+ |
T Consensus       232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            468999999999999999999999999977 8

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.96  E-value=0.0093  Score=54.81  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ||. ...|.|||+|..|...|..|++.|++|+++|+.
T Consensus         1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQ-SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCC-cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            554 357999999999999999999999999999985

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.03  Score=47.74  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=35.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.++++++++...
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~   47 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV   47 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            357888887 89999999999999999999999988766553

>PRK07190 hypothetical protein; Provisional

Probab=95.94  E-value=0.011  Score=55.84  Aligned_cols=40  Identities=28%  Similarity=0.464  Sum_probs=35.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      |.+....|.|||+|..|..+|..|+++|++|.++|+.++.
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            6656678999999999999999999999999999988653

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.94  E-value=0.43  Score=41.37  Aligned_cols=39  Identities=31%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|.+ |++.++++++++.+
T Consensus       122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a  161 (280)
T TIGR03366       122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA  161 (280)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            5799999999999999988889987 88889998877655

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.92  E-value=0.011  Score=54.93  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.++.-.|.|||+|.-|+..|..|+++|++|.++|+.+
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~   38 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGN   38 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            65455679999999999999999999999999999864

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.92  E-value=0.011  Score=54.32  Aligned_cols=34  Identities=35%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +++|.|||+|..|+..|..|++.|++|++++..+
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            3579999999999999999999999999999543

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.029  Score=48.14  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=37.4

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |..+.++|.|.|+ |.+|..++..|++.|++|++.+|+++.++..
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~   45 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEAL   45 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            5444578999986 9999999999999999999999998776554

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.91  E-value=0.032  Score=48.22  Aligned_cols=70  Identities=24%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|.|||-+ ..|.++|..|...|..|++...+...++..                                     ++
T Consensus       152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~-------------------------------------~~  194 (279)
T PRK14178        152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAE-------------------------------------LR  194 (279)
T ss_pred             CCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHH-------------------------------------Hh
Confidence            3789999998 889999999999999999998765433221                                     45


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +||+||.+++-..-++.       .+++++++++.
T Consensus       195 ~ADIvI~Avgk~~lv~~-------~~vk~GavVID  222 (279)
T PRK14178        195 QADILVSAAGKAGFITP-------DMVKPGATVID  222 (279)
T ss_pred             hCCEEEECCCcccccCH-------HHcCCCcEEEE
Confidence            79999999974322222       23577877663

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.91  E-value=0.0089  Score=55.00  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|.-|..+|..|++.|++|+++|+.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            4799999999999999999999999999998764

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.90  E-value=0.022  Score=49.44  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=29.6

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -++|.|||-+. +|.++|..|...|..|++++..
T Consensus       164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~  197 (287)
T PRK14176        164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF  197 (287)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence            47899999987 8999999999999999999843

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.032  Score=47.46  Aligned_cols=40  Identities=25%  Similarity=0.212  Sum_probs=35.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~   47 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEET   47 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            368999988 8999999999999999999999998876554

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.88  E-value=0.029  Score=52.57  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             CcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~-iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|.+ +|..|.+.|++|+++|.++.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            468999999999999 79999999999999998754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.88  E-value=0.011  Score=53.89  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|..|.+.|..|++.|++|+++|+.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            479999999999999999999999999999764

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.86  E-value=0.034  Score=47.42  Aligned_cols=40  Identities=30%  Similarity=0.300  Sum_probs=35.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|.|+ |.+|..+|..|++.|++|++.++++++.+..
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~   50 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAA   50 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            368999987 9999999999999999999999998766554

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.13  Score=42.99  Aligned_cols=39  Identities=26%  Similarity=0.369  Sum_probs=34.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++++|++++...
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~   46 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ   46 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence            468999987 999999999999999999999999876544

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.85  E-value=0.01  Score=55.05  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..++|+|||||.-|..-|..|.+.|++|++++++..
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            357899999999999999999999999999998753

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=95.85  E-value=0.012  Score=53.78  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=31.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4799999999999999999999999999998774

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.83  E-value=0.01  Score=53.81  Aligned_cols=31  Identities=29%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .|.|||+|.+|.+.|..|++.|++|+++|+.
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.035  Score=46.73  Aligned_cols=46  Identities=22%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      |..+-+++.|.|+ +.+|.++|..|++.|++|++.+|++++++...+
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   47 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYE   47 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            5444567888888 669999999999999999999999987766543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.83  E-value=0.036  Score=46.91  Aligned_cols=45  Identities=27%  Similarity=0.398  Sum_probs=37.5

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      |..+-+++.|+|+ |.+|..++..|++.|++|++.++++++++...
T Consensus         1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~   46 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV   46 (253)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4334468899998 99999999999999999999999987765543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.83  E-value=0.011  Score=54.49  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=30.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||+|..|+..|..|++.|++|++++..+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999997554

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.82  E-value=0.028  Score=48.22  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=36.3

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |..+.+++.|.|+ |.+|..+|..|++.|++|++.+++.+.++..
T Consensus         1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l   45 (262)
T TIGR03325         1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQEL   45 (262)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5334567888887 8899999999999999999999998765543

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.80  E-value=0.029  Score=48.06  Aligned_cols=42  Identities=21%  Similarity=0.212  Sum_probs=35.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      |+|.|.|+ |.+|.++|..|++.|++|++.+|+++.++...+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   43 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE   43 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            37889987 8899999999999999999999998877655433

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.77  E-value=0.015  Score=54.30  Aligned_cols=36  Identities=22%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ....|.|||+|.-|+..|..|+++|++|.++|+...
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            345799999999999999999999999999998743

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.033  Score=47.08  Aligned_cols=39  Identities=21%  Similarity=0.335  Sum_probs=34.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~   41 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL   41 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence            57889986 9999999999999999999999998876554

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.041  Score=46.65  Aligned_cols=40  Identities=28%  Similarity=0.367  Sum_probs=35.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|+++..+..
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~   46 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV   46 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467889998 9999999999999999999999998765544

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.036  Score=47.82  Aligned_cols=44  Identities=20%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |..+.++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus         1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~   45 (273)
T PRK07825          1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET   45 (273)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4334568889988 9999999999999999999999999877654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.73  E-value=0.042  Score=46.79  Aligned_cols=40  Identities=28%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++++++++.++..
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~   51 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAA   51 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            478889987 9999999999999999999999998766554

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.041  Score=46.87  Aligned_cols=41  Identities=29%  Similarity=0.300  Sum_probs=35.6

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ..++|.|.|+ |.+|..+|..|++.|++|++.+|+++..+..
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~   45 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEV   45 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            3467889987 8999999999999999999999998766554

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.73  E-value=0.012  Score=57.84  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|.+|+++|..|++.|++|+++|++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            379999999999999999999999999999863

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=95.73  E-value=0.011  Score=53.68  Aligned_cols=32  Identities=28%  Similarity=0.523  Sum_probs=30.5

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.|||+|.-|...|..|++.|++|+++|+++.
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            88999999999999999999999999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.041  Score=48.21  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=35.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus        41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            67888887 999999999999999999999999887765533

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.72  E-value=0.04  Score=46.46  Aligned_cols=44  Identities=32%  Similarity=0.391  Sum_probs=36.9

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~   44 (297)
                      |.-+.++|.|+|+ |.+|..++..|++.|++|++. ++++++.+..
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~   46 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQEL   46 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            4444568999987 999999999999999999998 9998766544

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.71  E-value=0.02  Score=50.67  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|++++++++.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~   36 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD   36 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence            37899987 999999999999999999999998764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.70  E-value=0.036  Score=47.29  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=35.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+++.+..+..
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~   46 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA   46 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            467888887 9999999999999999999999998876654

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=95.68  E-value=0.11  Score=44.30  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCC-CcEE-EEeCCHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDG-LDVW-LVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G-~~V~-~~d~~~~   39 (297)
                      ++||+|.|+ |.||+.+...+.+.. +++. .+|+.+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~   39 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS   39 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence            468999999 999999999988775 4543 6677754

>PRK09126 hypothetical protein; Provisional

Probab=95.68  E-value=0.014  Score=53.23  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            4799999999999999999999999999998754

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.67  E-value=0.014  Score=53.88  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|..+|..|+++|+ +|++++++++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            479999999999999999999984 9999998765

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.67  E-value=0.014  Score=53.07  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|..|.++|..|++.|++|+++|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            46999999999999999999999999999975

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.65  E-value=0.011  Score=54.24  Aligned_cols=32  Identities=38%  Similarity=0.551  Sum_probs=30.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|.|||+|..|.++|..|+++|++|+++|+.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            69999999999999999999999999999875

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.64  E-value=0.015  Score=53.10  Aligned_cols=32  Identities=28%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHC---CCcEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD---GLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~---G~~V~~~d~~   37 (297)
                      ..|.|||+|..|..+|..|++.   |++|+++|+.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            5799999999999999999998   9999999994

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=95.64  E-value=0.016  Score=52.41  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|.|||+|.+|.+.|..|++.|++|+++|+..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999999999999763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=95.64  E-value=0.012  Score=53.55  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             EEEECCChhHHHHHHHHHHCC-CcEEEEeCCHH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPD   39 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~   39 (297)
                      |.|||+|..|...|..|+++| ++|+++|+.+.
T Consensus         2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            789999999999999999999 99999998754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02985 squalene monooxygenase

Probab=95.63  E-value=0.017  Score=54.76  Aligned_cols=34  Identities=29%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ...|.|||+|..|+..|..|++.|++|+++|+++
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3579999999999999999999999999999874

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=95.63  E-value=0.047  Score=48.54  Aligned_cols=85  Identities=22%  Similarity=0.345  Sum_probs=48.6

Q ss_pred             EEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            8 MGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |+|+|.|.+|+..+..+.+ .+.+|+ +.|.+++..+.+.....  ++.+.   ........-....+....++++ +.+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lg--yds~~---~~~~~~~~~~~~~l~v~g~~eeLl~~   75 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELG--IPVYA---ASEEFIPRFEEAGIEVAGTLEDLLEK   75 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhC--CCEEe---ecCCcceEeccCceEecCCHHHHhhc
Confidence            6899999999999998765 456766 45777765443321100  00000   0000000011123445556666 678


Q ss_pred             CcEEEEeccccHH
Q 022434           85 ADIIVEAIVESED   97 (297)
Q Consensus        85 aD~Vi~~v~e~~~   97 (297)
                      +|+|++|.|....
T Consensus        76 vDiVve~Tp~~~~   88 (333)
T TIGR01546        76 VDIVVDATPGGIG   88 (333)
T ss_pred             CCEEEECCCCCCC
Confidence            9999999987654

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=95.62  E-value=0.022  Score=48.94  Aligned_cols=68  Identities=25%  Similarity=0.312  Sum_probs=49.7

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -+++.|||.+. +|.+|+..|..+++.|++.....                                      .++.+ +
T Consensus       156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------------------------------~~l~~~~  197 (283)
T COG0190         156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------------------------------KDLASIT  197 (283)
T ss_pred             CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------------------------------CCHHHHh
Confidence            36899999955 59999999999999999987443                                      22233 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +.||++|.++--..-++       .++++++++++
T Consensus       198 k~ADIvv~AvG~p~~i~-------~d~vk~gavVI  225 (283)
T COG0190         198 KNADIVVVAVGKPHFIK-------ADMVKPGAVVI  225 (283)
T ss_pred             hhCCEEEEecCCccccc-------cccccCCCEEE
Confidence            68999999986433333       34567777665

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.62  E-value=0.039  Score=49.07  Aligned_cols=43  Identities=33%  Similarity=0.425  Sum_probs=36.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +.+.|.|+ |.+|..+|..|++.|++|++++|++++++...+.+
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l   97 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI   97 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence            56777887 88999999999999999999999998877664443

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.05  Score=45.86  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=34.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++++|+++.++..
T Consensus         7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~   46 (239)
T PRK08703          7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKV   46 (239)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence            67889987 9999999999999999999999998766554

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.045  Score=46.41  Aligned_cols=44  Identities=30%  Similarity=0.351  Sum_probs=36.7

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+.++|.|.|+ |.+|..++..|++.|++|++++|+.+..+..
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   45 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV   45 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence            5434568999988 9999999999999999999999998765543

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.59  E-value=0.61  Score=41.82  Aligned_cols=40  Identities=28%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|+++++++++++.+
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            4689999999999999999999999999999999887665

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.59  E-value=0.013  Score=55.74  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=28.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +||+|||+|.-|...+..|.+.|++|++++++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            6899999999999999999999999999998753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.59  E-value=0.049  Score=46.32  Aligned_cols=40  Identities=30%  Similarity=0.298  Sum_probs=35.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   44 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA   44 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            368999986 9999999999999999999999998876654

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.58  E-value=0.052  Score=48.71  Aligned_cols=93  Identities=17%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             CCCcEEEEECC-ChhHHHHHHHHHHCCCc---EEEEe--CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434            3 EKMKVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVD--TDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT   76 (297)
Q Consensus         3 ~~~~~I~viG~-G~mG~~iA~~l~~~G~~---V~~~d--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      +...+|+|||+ |..|..+...|...+|+   +..+.  ++..+.-.             ..|           ..+.+.
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-------------~~~-----------~~~~v~   60 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-------------FEG-----------RDYTVE   60 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-------------ecC-----------ceeEEE
Confidence            34579999999 99999999999998885   33332  22211000             001           112222


Q ss_pred             c-CccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           77 S-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        77 ~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      . +.++++++|+||.|+|....  .++..++   ...++.|+.+++..-
T Consensus        61 ~~~~~~~~~~D~vf~a~p~~~s--~~~~~~~---~~~g~~VIDlS~~fR  104 (344)
T PLN02383         61 ELTEDSFDGVDIALFSAGGSIS--KKFGPIA---VDKGAVVVDNSSAFR  104 (344)
T ss_pred             eCCHHHHcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCchhh
Confidence            2 22347789999999997653  2333333   235677777777543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.58  E-value=0.047  Score=46.15  Aligned_cols=40  Identities=30%  Similarity=0.301  Sum_probs=34.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|+++++...
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~   46 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT   46 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367999986 9999999999999999999999998765544

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.58  E-value=0.014  Score=53.39  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~   38 (297)
                      ..|.|||+|.+|.++|..|++.  |++|+++|+.+
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3699999999999999999998  99999999864

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.58  E-value=0.047  Score=47.24  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..++..|++.|++|++++++++..+..
T Consensus        11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   50 (278)
T PRK08277         11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV   50 (278)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56788887 8999999999999999999999998766544

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.58  E-value=0.036  Score=47.97  Aligned_cols=40  Identities=23%  Similarity=0.184  Sum_probs=35.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l   44 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF   44 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence            467889987 9999999999999999999999998766543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.56  E-value=0.025  Score=48.89  Aligned_cols=69  Identities=23%  Similarity=0.284  Sum_probs=49.8

Q ss_pred             CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|.|||-+ .+|.++|..|.+.|..|++.....                                      .++.+ +
T Consensus       157 Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------------------------------~~l~~~~  198 (281)
T PRK14183        157 GKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------------------------------KDLKAHT  198 (281)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------------------------------cCHHHHH
Confidence            4689999997 889999999999999999875322                                      22222 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +.||+||.++.-..-++       .++++++++++.
T Consensus       199 ~~ADIvV~AvGkp~~i~-------~~~vk~gavvID  227 (281)
T PRK14183        199 KKADIVIVGVGKPNLIT-------EDMVKEGAIVID  227 (281)
T ss_pred             hhCCEEEEecCcccccC-------HHHcCCCcEEEE
Confidence            68999999996433222       245677877663

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.54  E-value=0.043  Score=43.95  Aligned_cols=39  Identities=28%  Similarity=0.454  Sum_probs=34.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|..|.+-+..+...|++|+.+|.++++++..
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~   59 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL   59 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence            589999999999999999999999999999998877654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.04  Score=47.74  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++.+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l   44 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL   44 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            357889998 9999999999999999999999998876544

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.53  E-value=0.017  Score=54.12  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|+|||+|.-|...|..|.+.|++|++++++.
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4789999999999999999999999999999764

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.53  E-value=0.16  Score=45.47  Aligned_cols=40  Identities=28%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|++.++++++++.+
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a  210 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA  210 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH
Confidence            3689999999999999988888898 588999999888766

>PRK08267 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.04  Score=47.11  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=34.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|+|+ |.+|..++..|++.|++|++++++++.++.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   41 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL   41 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            57889987 9999999999999999999999998876655

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.053  Score=46.60  Aligned_cols=39  Identities=28%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|+..|++|++.+|+++.++..
T Consensus        10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   49 (264)
T PRK07576         10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA   49 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            67889988 8999999999999999999999998766544

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.53  E-value=0.047  Score=46.79  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.++++++++..
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL   46 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467888887 8899999999999999999999998776554

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.53  E-value=0.6  Score=42.24  Aligned_cols=170  Identities=12%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhcccCCCcEE---e
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLS----QAVGTDAPRRLRC---T   76 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~i~~---~   76 (297)
                      |.+|-|+|+|..+-.+|..|.+.+. .|-++.|.-.+.+++.+.+.+.      .+.+.    .++.....+...+   .
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~------~~~~~v~vqn~~h~~l~G~~~id~~~   74 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARS------DGLFEVSVQNEQHQALSGECTIDHVF   74 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhC------CCEEEEeecchhhhhhcCeEEhhHhh
Confidence            3589999999999999999998875 6999999766666554433221      11110    0111111122222   2


Q ss_pred             cCccc-cCCCcEEEEeccccHHHHHHHHHHHHhh--cCCCeEEEecCCCCc----HHHHhhhcCCCCeEEEee-------
Q 022434           77 SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKI--TKASAILASNTSSIS----ITRLASATSRPCQVIGMH-------  142 (297)
Q Consensus        77 ~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~----~~~l~~~~~~~~~~~g~h-------  142 (297)
                      .++++ ..+=|.+|.|+|.|.  -..++++|...  ..-.++|. -++++.    ++.+.........++...       
T Consensus        75 ~~~~~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVL-vSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr  151 (429)
T PF10100_consen   75 QDYEEIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVL-VSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTR  151 (429)
T ss_pred             cCHHHhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEE-ECcccchHHHHHHHHHhcCCCceEEEeecccccce
Confidence            44455 345799999999876  44677765432  22344544 233333    333333333222344332       


Q ss_pred             cCCC--C-CCC-----ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          143 FMNP--P-PLM-----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       143 ~~~p--~-~~~-----~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      |.++  | ++.     +-+=+-. ...+...++++..+++.+|-....+.
T Consensus       152 ~~d~~~~~~vlt~~vK~kiYigS-t~~~s~~~~~l~~~~~~~gI~~~~~~  200 (429)
T PF10100_consen  152 WSDGEQPNRVLTTAVKKKIYIGS-THSNSPELDKLCRLLAQLGIQLEVMD  200 (429)
T ss_pred             eccCCCcceehhhhhhceEEEEe-CCCCChHHHHHHHHHHHcCCeEEEeC
Confidence            2221  2 110     1122222 34556678888999999999888764

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.53  E-value=0.05  Score=46.11  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|+++++++++++..
T Consensus        12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~   52 (247)
T PRK08945         12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAV   52 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence            467888877 9999999999999999999999998776554

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.52  E-value=0.057  Score=45.37  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=36.8

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-..++|.|.|+ |.+|..++..|++.|++|++.+|+++..+.+
T Consensus         1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (238)
T PRK05786          1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM   45 (238)
T ss_pred             CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4333468999988 8899999999999999999999998766544

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.51  E-value=0.027  Score=50.58  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD   27 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~   27 (297)
                      .+|+|+|+|.||..++..+.+.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            5899999999999999998765

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.053  Score=46.35  Aligned_cols=41  Identities=34%  Similarity=0.359  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~   49 (260)
T PRK07063          8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAA   49 (260)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56778887 899999999999999999999999887665543

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.51  E-value=0.035  Score=46.48  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~   43 (297)
                      .+|+|+|.|.+|+..+..|++.|. +++++|.+.=.+..
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN   69 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTN   69 (263)
T ss_pred             CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccc
Confidence            589999999999999999999997 78888876544433

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.017  Score=53.51  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||+|+|+|.-|.+-|..|+++||+|++|+...
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~   33 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD   33 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence            589999999999999999999999999998764

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.50  E-value=0.054  Score=46.14  Aligned_cols=40  Identities=20%  Similarity=0.137  Sum_probs=34.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.++++++++...
T Consensus        10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~   50 (254)
T PRK08085         10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAV   50 (254)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            56888887 89999999999999999999999987766553

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.49  E-value=0.025  Score=49.18  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=31.7

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      +|.|+|+ |.+|+.++..|.+.|++|++..|++++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~   36 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS   36 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence            4789998 9999999999999999999999998743

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.49  E-value=0.12  Score=46.40  Aligned_cols=97  Identities=23%  Similarity=0.292  Sum_probs=58.8

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHH-CCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVM-DGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~-~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      |.....+|+|||+ |..|.-+...|.. ..++   +.++....+                  .|..-.  .  ....+.+
T Consensus         1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s------------------aGk~~~--~--~~~~l~v   58 (347)
T PRK06728          1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS------------------AGKTVQ--F--KGREIII   58 (347)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc------------------CCCCee--e--CCcceEE
Confidence            6555679999999 9999999999995 6777   555543321                  011000  0  0011222


Q ss_pred             e-cCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           76 T-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        76 ~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      . .+.++++++|++|.|+|....  .++..++   ...+++++.+++..-
T Consensus        59 ~~~~~~~~~~~Divf~a~~~~~s--~~~~~~~---~~~G~~VID~Ss~fR  103 (347)
T PRK06728         59 QEAKINSFEGVDIAFFSAGGEVS--RQFVNQA---VSSGAIVIDNTSEYR  103 (347)
T ss_pred             EeCCHHHhcCCCEEEECCChHHH--HHHHHHH---HHCCCEEEECchhhc
Confidence            2 233447889999999987643  3333332   235678887887543

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.33  Score=43.37  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...
T Consensus         9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~   49 (334)
T PRK07109          9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA   49 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            57888887 99999999999999999999999988766553

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.47  E-value=0.26  Score=44.34  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeC---CHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT---DPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~---~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|+++++   ++++.+.+
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~  215 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV  215 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence            46899999999999999988889999999998   56665544

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.45  E-value=0.12  Score=45.66  Aligned_cols=39  Identities=26%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|.+ |.++|+++++++.+
T Consensus       146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a  185 (308)
T TIGR01202       146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA  185 (308)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence            5799999999999888888888987 55678888766543

>PRK14852 hypothetical protein; Provisional

Probab=95.44  E-value=0.065  Score=53.90  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|+|||+|.+|+.+|..|+..|. +++++|.|.
T Consensus       333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~  366 (989)
T PRK14852        333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA  366 (989)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence            689999999999999999999997 688888664

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.44  E-value=0.036  Score=52.80  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=35.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|+|+|.+|++++..|++.|.+|++++|+.++.+.+
T Consensus       380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~l  418 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKEL  418 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            578999999999999999999999999999998877655

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.43  E-value=0.019  Score=55.86  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=32.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +..+|.|||+|..|..+|..|++.|++|++|++++
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            34689999999999999999999999999999875

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.43  E-value=0.068  Score=39.89  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             CCChhHHHHHHHHHHC----CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC--
Q 022434           12 GSGQMGSGIAQLGVMD----GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH--   83 (297)
Q Consensus        12 G~G~mG~~iA~~l~~~----G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~--   83 (297)
                      |+|.||+.++..|.+.    +++|. +++++ ........       ...              .....++++++ +.  
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~   58 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWA-------ASF--------------PDEAFTTDLEELIDDP   58 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHH-------HHH--------------THSCEESSHHHHHTHT
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhh-------hhc--------------ccccccCCHHHHhcCc
Confidence            8999999999999887    56655 56877 11110000       000              11135677766 55  


Q ss_pred             CCcEEEEeccc
Q 022434           84 SADIIVEAIVE   94 (297)
Q Consensus        84 ~aD~Vi~~v~e   94 (297)
                      +.|+||||.+.
T Consensus        59 ~~dvvVE~t~~   69 (117)
T PF03447_consen   59 DIDVVVECTSS   69 (117)
T ss_dssp             T-SEEEE-SSC
T ss_pred             CCCEEEECCCc
Confidence            79999999554

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.058  Score=45.91  Aligned_cols=41  Identities=24%  Similarity=0.223  Sum_probs=35.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      -+++.|.|+ |.+|..+|..|++.|++|++.++++++++...
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   50 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA   50 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            357888888 89999999999999999999999987766553

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.42  E-value=0.046  Score=46.43  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+|.|+|+ |..|..+|..|++.|++|++.+|++++++..
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   40 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL   40 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            36889987 9999999999999999999999998776554

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.41  E-value=0.25  Score=43.04  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|+|+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            589999999999999999999997 699999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.22  Score=43.06  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++++|+.+.
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   42 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEP   42 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccccc
Confidence            467888887 899999999999999999999998653

>PRK09186 flagellin modification protein A; Provisional

Probab=95.41  E-value=0.057  Score=45.90  Aligned_cols=42  Identities=26%  Similarity=0.293  Sum_probs=36.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.++++++++...+
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   46 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLE   46 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHH
Confidence            468889987 899999999999999999999999887765533

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=95.40  E-value=0.02  Score=52.30  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=31.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            5799999999999999999999999999998864

>PRK14851 hypothetical protein; Provisional

Probab=95.38  E-value=0.057  Score=52.80  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|+|||+|.+|+.++..|+..|. +++++|.|.
T Consensus        44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~   77 (679)
T PRK14851         44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ   77 (679)
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence            689999999999999999999997 688888653

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.37  E-value=0.028  Score=50.40  Aligned_cols=90  Identities=22%  Similarity=0.330  Sum_probs=53.2

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD   81 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~   81 (297)
                      +|+|||+ |..|..+...|.++||++.   ++.++.+.-+..           .-.|           ..+.+. .+.++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~-----------~~~~-----------~~~~~~~~~~~~   58 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKV-----------TFKG-----------KELEVNEAKIES   58 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCee-----------eeCC-----------eeEEEEeCChHH
Confidence            5899997 9999999999999998754   443443211111           0001           011221 12234


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++++|+||+|.+....  .++..++   ...+++|+++++.+
T Consensus        59 ~~~~D~v~~a~g~~~s--~~~a~~~---~~~G~~VID~ss~~   95 (339)
T TIGR01296        59 FEGIDIALFSAGGSVS--KEFAPKA---AKCGAIVIDNTSAF   95 (339)
T ss_pred             hcCCCEEEECCCHHHH--HHHHHHH---HHCCCEEEECCHHH
Confidence            7889999999986543  2333333   33456777676643

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=95.37  E-value=0.078  Score=42.01  Aligned_cols=78  Identities=14%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             cEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~--G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+|++||-  +++..+++..+++-|.+|+++.+..-....-.+.+....+...+.|           ..+.+++++++ +
T Consensus         3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g-----------~~i~~~~~~~e~l   71 (158)
T PF00185_consen    3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG-----------GKITITDDIEEAL   71 (158)
T ss_dssp             EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT-----------TEEEEESSHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC-----------CCeEEEeCHHHhc
Confidence            58999994  7999999999999999999988765221111111111112222223           34567888865 9


Q ss_pred             CCCcEEEEeccc
Q 022434           83 HSADIIVEAIVE   94 (297)
Q Consensus        83 ~~aD~Vi~~v~e   94 (297)
                      +++|+|+...--
T Consensus        72 ~~aDvvy~~~~~   83 (158)
T PF00185_consen   72 KGADVVYTDRWQ   83 (158)
T ss_dssp             TT-SEEEEESSS
T ss_pred             CCCCEEEEcCcc
Confidence            999999976643

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=95.35  E-value=0.022  Score=52.33  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             EEEEECCChhHHHHHHHHHHC-CC-cEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~-G~-~V~~~d~~   37 (297)
                      .|.|||+|.+|+++|..|++. |. +|+++|++
T Consensus        32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            699999999999999999985 95 89999986

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08264 short chain dehydrogenase; Validated

Probab=95.35  E-value=0.041  Score=46.31  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=33.5

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCC-cEEEEeCCHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGL-DVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~-~V~~~d~~~~~~   41 (297)
                      ..++|.|+|+ |.+|..+|..|++.|+ +|+++++++++.
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~   44 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESV   44 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhh
Confidence            4468999986 9999999999999999 999999997654

>PRK08017 oxidoreductase; Provisional

Probab=95.34  E-value=0.043  Score=46.67  Aligned_cols=39  Identities=23%  Similarity=0.231  Sum_probs=34.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++++|++++++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~   42 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM   42 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence            47999998 9999999999999999999999998766543

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.34  E-value=0.032  Score=51.50  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=33.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .++|.|+|+|.-|.+.|..|.+.|++|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            589999999999999999999999999999977664

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=95.33  E-value=0.026  Score=48.17  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|+|||+|.-|..-|..|..+|++|+++|++..
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G   35 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRG   35 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence            4699999999999999999999999999998754

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.33  E-value=0.025  Score=53.64  Aligned_cols=36  Identities=36%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             CCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            2 EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         2 ~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      +...-.|.|||+|..|.++|..|++.|++|.++++.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            333457999999999999999999999999999986

>PRK06194 hypothetical protein; Provisional

Probab=95.31  E-value=0.066  Score=46.49  Aligned_cols=40  Identities=35%  Similarity=0.497  Sum_probs=34.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++..
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   46 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRA   46 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            367888887 8999999999999999999999998766554

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.30  E-value=0.09  Score=42.85  Aligned_cols=85  Identities=20%  Similarity=0.282  Sum_probs=55.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe--cC---
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT--SN---   78 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---   78 (297)
                      -++|.|||- ..+|.++|..|.+.|..|+++|.+.-..-             ...+.+          +-+.+  .+   
T Consensus        62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~-------------~~~~~~----------~hs~t~~~~~~~  118 (197)
T cd01079          62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVF-------------TRGESI----------RHEKHHVTDEEA  118 (197)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccc-------------cccccc----------ccccccccchhh
Confidence            478999998 55699999999999999999986643210             000000          00111  12   


Q ss_pred             -ccc-cCCCcEEEEeccccHH-HHHHHHHHHHhhcCCCeEEEec
Q 022434           79 -LKD-LHSADIIVEAIVESED-VKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        79 -~~~-~~~aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +.+ ++.||+||.+++-..- ++.       ++++++++++.-
T Consensus       119 ~l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDV  155 (197)
T cd01079         119 MTLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINF  155 (197)
T ss_pred             HHHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEc
Confidence             333 7899999999976543 333       345678877643

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.29  E-value=0.049  Score=46.03  Aligned_cols=39  Identities=15%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++++|++++++..
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~   41 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDEL   41 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            56888886 9999999999999999999999998766544

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=95.29  E-value=0.063  Score=45.19  Aligned_cols=48  Identities=19%  Similarity=0.241  Sum_probs=38.3

Q ss_pred             CCCCCcEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            1 MEEKMKVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         1 M~~~~~~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      |+....+|.+| |+ ...|.++|..|+.+|++|++..|..++++++...+
T Consensus         1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~   50 (246)
T COG4221           1 MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEI   50 (246)
T ss_pred             CCCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhh
Confidence            54433455544 88 77899999999999999999999999998875543

>PRK07208 hypothetical protein; Provisional

Probab=95.27  E-value=0.025  Score=53.20  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+ ..++|.|||+|.-|.+.|..|.++|++|++++.++
T Consensus         1 ~~-~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~   37 (479)
T PRK07208          1 MT-NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP   37 (479)
T ss_pred             CC-CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            54 34689999999999999999999999999998754

>cd05295 MDH_like Malate dehydrogenase-like

Probab=95.26  E-value=0.2  Score=46.49  Aligned_cols=104  Identities=11%  Similarity=0.080  Sum_probs=61.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD---GL----DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~---G~----~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      -+|+|-|+ |.+|-++..++++-   |.    .++++|+  +.++++...-.+++..-.+              +..+.+
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i  189 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV  189 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence            47999998 99999999999873   32    4778898  5666554433333322111              112233


Q ss_pred             -ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCC-CeEEEecCCCC
Q 022434           76 -TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKA-SAILASNTSSI  123 (297)
Q Consensus        76 -~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~-~~ii~s~ts~~  123 (297)
                       +++++++++||+||.+..-              +..+.+.+...|.+..++ ..|++..|...
T Consensus       190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPv  253 (452)
T cd05295         190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFL  253 (452)
T ss_pred             EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcH
Confidence             4556679999999987632              122334444556666662 34444343333

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.06  Score=46.10  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=36.2

Q ss_pred             CcEEEEECC-C-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            5 MKVMGVVGS-G-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~I~viG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      .+++.|.|+ | .+|..++..|++.|++|++.++++++++...+.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~   61 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADE   61 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            367889997 6 699999999999999999999998877665443

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.077  Score=45.62  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=34.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   50 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKARE   50 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45677787 789999999999999999999999887766543

>PRK06184 hypothetical protein; Provisional

Probab=95.23  E-value=0.025  Score=53.63  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|..|...|..|++.|++|+++|+.++
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~   37 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE   37 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5799999999999999999999999999998754

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.065  Score=45.93  Aligned_cols=40  Identities=33%  Similarity=0.334  Sum_probs=34.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV   46 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367888887 9999999999999999999999998766554

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.22  E-value=0.069  Score=46.35  Aligned_cols=70  Identities=21%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|+|||- ..+|.++|..|.+.|..|++++.....++.                                     .++
T Consensus       158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~-------------------------------------~~~  200 (284)
T PRK14190        158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAE-------------------------------------LTK  200 (284)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHH-------------------------------------HHH
Confidence            478999998 677999999999999999998644322211                                     146


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-+..       ++++++++++.
T Consensus       201 ~ADIvI~AvG~p~~i~~-------~~ik~gavVID  228 (284)
T PRK14190        201 QADILIVAVGKPKLITA-------DMVKEGAVVID  228 (284)
T ss_pred             hCCEEEEecCCCCcCCH-------HHcCCCCEEEE
Confidence            79999999864432222       34577887763

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.078  Score=45.48  Aligned_cols=40  Identities=25%  Similarity=0.258  Sum_probs=34.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~   50 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV   50 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367888887 7899999999999999999999998776554

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.22  E-value=0.23  Score=44.60  Aligned_cols=66  Identities=9%  Similarity=0.112  Sum_probs=46.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+ .||...+..+...  +++++ ++|+++++.+++.++          .|.             ...+++++
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~----------~gi-------------~~y~~~ee   58 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR----------LGV-------------PLYCEVEE   58 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH----------hCC-------------CccCCHHH
Confidence            368999999 6899888888775  46655 779999887766321          121             24567776


Q ss_pred             -cCCCcEEEEeccc
Q 022434           82 -LHSADIIVEAIVE   94 (297)
Q Consensus        82 -~~~aD~Vi~~v~e   94 (297)
                       +++.|+++.++|.
T Consensus        59 ll~d~Di~~V~ipt   72 (343)
T TIGR01761        59 LPDDIDIACVVVRS   72 (343)
T ss_pred             HhcCCCEEEEEeCC
Confidence             6778888888754

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.21  E-value=0.45  Score=39.69  Aligned_cols=98  Identities=14%  Similarity=0.040  Sum_probs=58.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh----hhc-ccCCCcEE-ecCc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA----VGT-DAPRRLRC-TSNL   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~~i~~-~~~~   79 (297)
                      .+|-++|+|.  ..-|..|++.|++|+.+|.++..++.+.+          +.|.....    ... ....++++ ..|.
T Consensus        36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~D~  103 (213)
T TIGR03840        36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFA----------ENGLTPTVTQQGEFTRYRAGNIEIFCGDF  103 (213)
T ss_pred             CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHH----------HcCCCcceeccccceeeecCceEEEEccC
Confidence            5899999997  36677789999999999999998886421          11110000    000 00122332 2233


Q ss_pred             cc-----cCCCcEEEEec---cccHHHHHHHHHHHHhhcCCCeE
Q 022434           80 KD-----LHSADIIVEAI---VESEDVKKKLFSELDKITKASAI  115 (297)
Q Consensus        80 ~~-----~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~i  115 (297)
                      .+     ...-|.|+++.   .-+.+.....++.+.+.++++..
T Consensus       104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~  147 (213)
T TIGR03840       104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR  147 (213)
T ss_pred             CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence            22     12358787643   12344466788888888888763

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=95.20  E-value=0.055  Score=47.02  Aligned_cols=45  Identities=24%  Similarity=0.353  Sum_probs=38.4

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSS   51 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~   51 (297)
                      +.+|| |+ ..+|.+.|..||+.|++|+++.|+++++++..+.|++.
T Consensus        50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~   96 (312)
T KOG1014|consen   50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEK   96 (312)
T ss_pred             CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHH
Confidence            44544 77 78999999999999999999999999999987776643

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.18  E-value=0.054  Score=45.36  Aligned_cols=38  Identities=34%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~   40 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVA   40 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            6888987 8999999999999999999999998876554

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.18  E-value=0.029  Score=53.21  Aligned_cols=32  Identities=38%  Similarity=0.518  Sum_probs=30.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -.|.|||+|..|+++|..+++.|++|.++|++
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46999999999999999999999999999985

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.17  E-value=0.05  Score=46.43  Aligned_cols=38  Identities=26%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      .++|.|+|+ |.+|+.++..|++.|++|++..|++++..
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   55 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK   55 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            578999997 99999999999999999999999987543

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=95.17  E-value=0.029  Score=53.71  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|.+|+++|..|++.|++|+++|++
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            46999999999999999999999999999975

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.17  E-value=0.08  Score=47.77  Aligned_cols=93  Identities=20%  Similarity=0.271  Sum_probs=54.1

Q ss_pred             cEEEEECC-ChhHHHHHH-HHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            6 KVMGVVGS-GQMGSGIAQ-LGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~-~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .+|+|||+ |..|.-+.. .|....++   +.++....+    .              |...  ........+.-..+.+
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s----g--------------~~~~--~f~g~~~~v~~~~~~~   61 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA----G--------------GAAP--SFGGKEGTLQDAFDID   61 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh----C--------------Cccc--ccCCCcceEEecCChh
Confidence            58999999 999999998 66666777   666543211    1              1100  0000001111112344


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCC--eEEEecCCCC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKAS--AILASNTSSI  123 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~--~ii~s~ts~~  123 (297)
                      +++++|++|.|+|....  .++..++.   ..+  +++++++|..
T Consensus        62 ~~~~~Divf~a~~~~~s--~~~~~~~~---~aG~~~~VID~Ss~f  101 (369)
T PRK06598         62 ALKKLDIIITCQGGDYT--NEVYPKLR---AAGWQGYWIDAASTL  101 (369)
T ss_pred             HhcCCCEEEECCCHHHH--HHHHHHHH---hCCCCeEEEECChHH
Confidence            57889999999986543  33444332   345  6788888754

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.17  E-value=0.083  Score=47.15  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEEE-EeCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVWL-VDTD   37 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~-G~~V~~-~d~~   37 (297)
                      |.....||+|+|+|.||+..+..+.+. +.+++. .|++
T Consensus         1 ~~~~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~   39 (338)
T PLN02358          1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF   39 (338)
T ss_pred             CCCCceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence            544456999999999999999987754 567665 4544

>PRK10015 oxidoreductase; Provisional

Probab=95.17  E-value=0.028  Score=52.20  Aligned_cols=39  Identities=31%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |....-.|.|||+|.-|+..|..|+++|++|.++|+.+.
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~   39 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS   39 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            544345799999999999999999999999999998754

>PRK06720 hypothetical protein; Provisional

Probab=95.16  E-value=0.094  Score=42.04  Aligned_cols=39  Identities=28%  Similarity=0.265  Sum_probs=32.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +.+.|.|+ +.+|.++|..|++.|++|.++|++.+.++..
T Consensus        17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~   56 (169)
T PRK06720         17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQAT   56 (169)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            56777787 5699999999999999999999997755443

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.16  E-value=0.18  Score=45.09  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=32.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-C-CCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-D-GLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+.+ . +.+|+++|+++++++.+
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a  205 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF  205 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH
Confidence            3589999999999988877765 4 46899999999887765

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.16  E-value=0.22  Score=42.76  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |+ +.++|.|.|+ |.+|..++..|++.|++|++.+|+++..
T Consensus         1 m~-~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~   41 (270)
T PRK06179          1 MS-NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARA   41 (270)
T ss_pred             CC-CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhc
Confidence            54 3457888887 9999999999999999999999987543

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.088  Score=44.71  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=34.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+++.+.++..
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~   48 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAV   48 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367888886 9999999999999999999999998766654

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.062  Score=45.80  Aligned_cols=40  Identities=28%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+ |.+|..++..|++.|++|+++++++...+..
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~   47 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA   47 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            368999998 9999999999999999999999998765543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.13  E-value=0.084  Score=45.07  Aligned_cols=40  Identities=28%  Similarity=0.194  Sum_probs=35.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+++.++++..
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~   52 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEA   52 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            367889986 9999999999999999999999998766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		2e-48
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		3e-48
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		4e-48
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		5e-48
3had_A	308	Biochemical Characterization And Structure Determin		6e-48
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		6e-48
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		6e-48
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		1e-47
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		1e-47
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		1e-46
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		7e-46
2hdh_A	293	Biochemical Characterization And Structure Determin		1e-45
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		6e-37
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		6e-37
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		6e-37
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		6e-37
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		9e-33
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		3e-24
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		7e-24
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		4e-23
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		6e-23
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		3e-16
3ado_A	319	Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr		6e-14
3ctv_A	110	Crystal Structure Of Central Domain Of 3-Hydroxyacy		3e-06

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/275 (40%), Positives = 150/275 (54%), Gaps = 11/275 (4%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   S
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSIS 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT LA+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP PLMKLVEV++   TS +T  +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHE-- 267
Query: 254 GDSK---YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            DS+   + P P + + V   + GKK G G + Y+
Sbjct: 268 MDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNT+S+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIV++  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLV+VI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIV+R
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVSR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 149/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNT S+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/273 (37%), Positives = 153/273 (56%), Gaps = 1/273 (0%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
           IA++    G  V L D   +AL RA   I + +   V++G+L+        +RL   +++
Sbjct: 20  IAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI 79
Query: 80  KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             L +AD+++EA  E  +VKK LF++L ++     +L +NTSSISIT +A+    P +V 
Sbjct: 80  HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVA 139
Query: 140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
           G+HF NP P+MKLVEV+ G  T+ E       L   +GK  V      GFIVNR+  P  
Sbjct: 140 GLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYY 199
Query: 200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIM-KVLHTGLGDSKY 258
           +EA+  L   VA  E IDA ++ G   PMGPL+L D IG DV  ++   V +    + ++
Sbjct: 200 SEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRF 259
Query: 259 APCPLLVQYVDAGRLGKKRGIGVFDYRRVPESV 291
            P  +  + V  GRLGKK G+GV+D+R   E+V
Sbjct: 260 LPSLVQQELVIGGRLGKKSGLGVYDWRAEREAV 292

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  180 bits (457), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 145/271 (53%), Gaps = 7/271 (2%)
Query: 22  QLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD--APRRLRCTSNL 79
           Q+    G  V LVD   D L ++ K I  S++K   K         D    + L   +  
Sbjct: 54  QVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 113
Query: 80  KD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRP 135
            D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+R 
Sbjct: 114 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQ 173
Query: 136 CQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195
            +  G+HF NP P+ KLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR+L
Sbjct: 174 DRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLL 233
Query: 196 MPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD 255
           +P + EA      G A+KEDID   KLG   P GP +L D++GLD    I+   H    +
Sbjct: 234 VPYLXEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAE 293
Query: 256 SK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           +  + P P L + V   + GKK G G + Y+
Sbjct: 294 NPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 324

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/280 (38%), Positives = 148/280 (52%), Gaps = 25/280 (8%)
Query: 22  QLGVMDGLDVWLVDTDPDALVRATKSISSSIQK---------------FVSKGQLSQAVG 66
           Q+    G  V LVD   D L ++ K I  S++K               FV+K   + A  
Sbjct: 21  QVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATS 80
Query: 67  TDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT 126
           TDA   +         HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT
Sbjct: 81  TDAASVV---------HSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQIT 131
Query: 127 RLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY 186
            +A+AT+R  +  G+HF NP P+ KLVEVI+   TS +TF +    ++  GK  V  +D 
Sbjct: 132 SIANATTRQDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDT 191
Query: 187 AGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIM 246
            GFIVNR+L+P + EA      G A+KEDID   KLG   P GP +L D++GLD    I+
Sbjct: 192 PGFIVNRLLVPYLXEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIV 251
Query: 247 KVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
              H    ++  + P P L + V   + GKK G G + Y+
Sbjct: 252 DGWHEXDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 291

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 324 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 381
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 382 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 441
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 442 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 501
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 502 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 558
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+  PL     +AGR G+K G G + Y
Sbjct: 559 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 586

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/270 (35%), Positives = 152/270 (56%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 60  GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 117
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 118 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 177
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 178 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 237
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 238 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 294
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+P   ++   +AGR G+K G G + Y
Sbjct: 295 NSRYSPLGDML--CEAGRFGQKTGKGWYQY 322

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 396
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 456
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 457 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 516
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 517 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 573
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+  PL     +AGR G+K G G + Y
Sbjct: 574 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 601

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 396
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 456
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 457 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 516
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 517 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 573
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+  PL     +AGR G+K G G + Y
Sbjct: 574 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 601

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 5/232 (2%)
Query: 56  VSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAI 115
           V KG+++ A   +    +R T +  D  + D++VEA+VE+  VK+ + +E++   +  AI
Sbjct: 365 VDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAI 424
Query: 116 LASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER 175
           LASNTS+ISI+ LA A  RP   +GMHF NP  +M LVEVIRG  +SD     T A A++
Sbjct: 425 LASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK 484
Query: 176 FGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLA 234
            GK  +   D  GF+VNR+L P     F  L +       ID  M K G   PMGP  L 
Sbjct: 485 MGKNPIVVNDCPGFLVNRVLFPYFG-GFAKLVSAGVDFVRIDKVMEKFG--WPMGPAYLM 541
Query: 235 DFIGLDVCLSIMKVLHTGLGDS-KYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           D +G+D       V+  G  D  K      +    +A RLG+K G G + Y 
Sbjct: 542 DVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYE 593

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 10/281 (3%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79
           IA   ++    V L + +   L      + +++Q  V KG +SQ         L+ + + 
Sbjct: 327 IATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY 386
Query: 80  KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
           +     D+++EA++E+  +K+++F++L+K      ILASNTS+I + ++   T    +++
Sbjct: 387 ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIV 446
Query: 140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
           G HF +P  +M L+E++R   TS +       + ++  KT V   +  GF VNR+  P  
Sbjct: 447 GAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYT 506
Query: 200 NEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
             A F +  G A    ID  + K G   PMGP +L D +G  V ++          +  Y
Sbjct: 507 QAAMFLVECG-ADPYLIDRAISKFG--MPMGPFRLCDLVGFGVAIATATQFIENFSERTY 563
Query: 259 AP--CPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
                PL+ +   AG   +K G  ++D +R     KP+  L
Sbjct: 564 KSMIIPLMQEDKRAGEATRK-GFYLYDDKR---KAKPDPEL 600

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 29/244 (11%)
Query: 73  LRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 132
           L+ TS+   L + D+IVE+++E   +KK+LF+ L+ I K++ I  +NTSS+ +  ++S  
Sbjct: 119 LKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVL 178
Query: 133 SRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVN 192
             P  ++G+HF NP  +++LVE+I G+ TS +         E   K  V   +   F+ N
Sbjct: 179 RDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFN 238
Query: 193 RILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP--MGPLQLADFIGLDVCLSIMKVLH 250
           R+L    +++   +Y        ID   K+ TN    MGP+ +AD  G DV   + K   
Sbjct: 239 RLLHVYFDQSQKLMYEYGYLPHQID---KIITNFGFLMGPMTVADMNGFDVMEKLKK--E 293
Query: 251 TGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY-----------------RRVPESVKP 293
            GL      P P+  +     R G+K   G + Y                 RRV ++ K 
Sbjct: 294 NGL-----EPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKS 348
Query: 294 NARL 297
           N ++
Sbjct: 349 NIQI 352

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 8/216 (3%)
Query: 72  RLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA 131
           ++  T+ L+ +   DI+ EA+ E  + K ++  E++++T A   L SNTS IS+  +A  
Sbjct: 61  KIEFTTTLEKVKDCDIVXEAVFEDLNTKVEVLREVERLTNAP--LCSNTSVISVDDIAER 118
Query: 132 TSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIV 191
              P + +G+H+ NPP +  LVE++    T  +T    +      GK VV  +  +  +V
Sbjct: 119 LDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS--LV 176
Query: 192 NRILMPMINEAFFTLYTGVATKEDIDAGMK--LGTNQPM-GPLQLADFIGLDVCLSIMKV 248
           NR    +++EA   +  GV   ED+D   K  LG    + GPL   D+IGLDV       
Sbjct: 177 NRFNAAVLSEASRXIEEGVRA-EDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLY 235
Query: 249 LHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           L+   GD K+ P   L + +  G +G K G G+++Y
Sbjct: 236 LYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEY 271

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 137/273 (50%), Gaps = 16/273 (5%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATK---SISSSIQKFVS---KGQLSQAVGTDAPRRL 73
           IA      G  V   D + DAL  A K    +++  +K V+    G   +A+G      +
Sbjct: 19  IAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG-----I 73
Query: 74  RCTSNL-KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 132
           R + +L + +  AD+++EA+ ES D+K+ ++++L ++  A  I A+N+S++  + L   T
Sbjct: 74  RYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYT 133
Query: 133 SRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT-VVCSQDYAGFIV 191
            R  + + +HF N   +    EV+    T  E ++     A   G   +   ++ AG+++
Sbjct: 134 GRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVL 193
Query: 192 NRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHT 251
           N +L+P+++ A   L  G+A  E ID   ++GT  P GP ++ D +GL    +I  V  +
Sbjct: 194 NSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLTTAYNISSV--S 251
Query: 252 GLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           G    ++A   L   Y+D G+LG   G G + Y
Sbjct: 252 GPKQREFAAY-LKENYIDKGKLGLATGEGFYRY 283

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 6/218 (2%)
Query: 21  AQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL--RCTSN 78
           A L    G  V L D +   +  A ++I   ++     G L  ++  +    L   C + 
Sbjct: 19  AMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNI 78
Query: 79  LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
            + +  A  I E + E  ++KKK+F++LD I     IL+S+TS +  ++L +      Q 
Sbjct: 79  QEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQC 138
Query: 139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV-CSQDYAGFIVNRILMP 197
           I  H +NPP  + LVE++   +T+  T   T AL ++ G+  +   ++ AGF++NR+   
Sbjct: 139 IVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYA 198
Query: 198 MINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQ 232
           +I+EA+  +  G+ +  D+D  M  G       +GPL+
Sbjct: 199 IISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLE 236

>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 6/218 (2%)
Query: 21  AQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL--RCTSN 78
           A L    G  V L D +P  +  A ++I   ++     G L  ++  +    L   CT+ 
Sbjct: 22  AMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNL 81
Query: 79  LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
            + +     I E + E+ D+K+K+F++LD I     +L+S++S +  ++L +  +   Q 
Sbjct: 82  AEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQC 141
Query: 139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV-CSQDYAGFIVNRILMP 197
           I  H +NPP  + LVE++   +TS  T   T AL  + G++ V   ++  GF++NR+   
Sbjct: 142 IVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYA 201
Query: 198 MINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQ 232
           +I+EA+  +  G+ +  D+D  M  G       +GPL+
Sbjct: 202 IISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLE 239

>pdb|3CTV|A Chain A, Crystal Structure Of Central Domain Of 3-Hydroxyacyl-Coa Dehydrogenase From Archaeoglobus Fulgidus Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 199 INEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
           INEA   +  GVAT +DID  +KLG N+P GP +LA   G +     ++ L    G   +
Sbjct: 28  INEAVKLVEXGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQFGKKIF 87
Query: 259 APCPLLVQ 266
            P   L +
Sbjct: 88  EPAKTLKE 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	1e-162
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	1e-159
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	2e-82
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	1e-143
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	2e-94
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	5e-93
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-10
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-92
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	9e-12
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	4e-90
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	2e-12
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	9e-90
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	9e-11
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	2e-88
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	7e-12
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	3e-59
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	5e-04
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	5e-04

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  452 bits (1166), Expect = e-162
 Identities = 114/288 (39%), Positives = 160/288 (55%), Gaps = 7/288 (2%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKG----- 59
           +K + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S++K   K      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74

Query: 60  QLSQAVGTDAPRRLRCTSNLKDL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118
           +            +  +++   + HS D++VEAIVE+  VK +LF  LDK      I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134

Query: 119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGK 178
           NTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194

Query: 179 TVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238
             V  +D  GFIVNR+L+P + EA      G A+KEDID  MKLG   PMGP +L D++G
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254

Query: 239 LDVCLSIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           LD    I+   H     +  + P P L + V   + GKK G G + Y+
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  451 bits (1161), Expect = e-159
 Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 1/296 (0%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
           M   ++ + V+GSG MG+GIA++    G  V L D   +AL RA   I + +   V++G+
Sbjct: 1   MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGK 60

Query: 61  LSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
           L+        +RL   +++  L +AD+++EA  E  +VKK LF++L ++     +L +NT
Sbjct: 61  LTAETCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNT 120

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           SSISIT +A+    P +V G+HF NP P+MKLVEV+ G  T+ E       L   +GK  
Sbjct: 121 SSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQP 180

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240
           V      GFIVNR+  P  +EA+  L   VA  E IDA ++ G   PMGPL+L D IG D
Sbjct: 181 VRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQD 240

Query: 241 VCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNA 295
           V  ++   +      + ++ P  +  + V  GRLGKK G+GV+D+R   E+V    
Sbjct: 241 VNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLE 296

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  255 bits (654), Expect = 2e-82
 Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 12/206 (5%)

Query: 81  DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIG 140
                 ++    V       K+  + D +T+   +L   T   +   LA   +RP  VI 
Sbjct: 286 RAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVID 345

Query: 141 MHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMIN 200
                     K+V +   A   D   R      ++ GKTV+   DY G ++ R +  +IN
Sbjct: 346 KMAG------KVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIIN 399

Query: 201 EAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAP 260
           EA   L  GVA+++DID  M+LG N P GPL     +G    L +++ L    G+ +Y P
Sbjct: 400 EALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRP 459

Query: 261 CPLLVQ--YVDAGRLGKKRGIGVFDY 284
           C LL Q   +++G   +    G   +
Sbjct: 460 CSLLRQRALLESGYESE----GHHHH 481

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  403 bits (1039), Expect = e-143
 Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 27/288 (9%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
               MKV  V+G+G MG GIA   +    +V L D    AL  A + I   +        
Sbjct: 9   HHHHMKV-FVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEELLS------ 60

Query: 61  LSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
                      ++  T+ L+ +   DI++EA+ E  + K ++  E++++T A   L SNT
Sbjct: 61  -----------KIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLTNA--PLCSNT 107

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           S IS+  +A     P + +G+H+MNPP +M LVE++    T  +T    +      GK V
Sbjct: 108 SVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEV 167

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMK--LGTNQPM-GPLQLADFI 237
           V  +     +VNR    +++EA   +  GV   ED+D   K  LG    + GPL   D+I
Sbjct: 168 VVCKGQ--SLVNRFNAAVLSEASRMIEEGVRA-EDVDRVWKHHLGLLYTLFGPLGNLDYI 224

Query: 238 GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           GLDV       L+   GD K+ P   L + +  G +G K G G+++Y 
Sbjct: 225 GLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYG 272

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  289 bits (742), Expect = 5e-93
 Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 13/282 (4%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD 68
            V+G+G MG GIA      G  + + D +   + +     +  +   V KG+++ A   +
Sbjct: 318 AVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAE 377

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
               +R T +  D  + D++VEA+VE+  VK+ + +E++   +  AILASNTS+ISI+ L
Sbjct: 378 VLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLL 437

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           A A  RP   +GMHF NP  +M LVEVIRG  +SD     T A A++ GK  +   D  G
Sbjct: 438 AKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPG 497

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDID-----AGMKLGTNQPMGPLQLADFIGLDVCL 243
           F+VNR+L P        +  G      ID      G       PMGP  L D +G+D   
Sbjct: 498 FLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVMEKFGW------PMGPAYLMDVVGIDTGH 550

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQY-VDAGRLGKKRGIGVFDY 284
               V+  G  D         +    +A RLG+K G G + Y
Sbjct: 551 HGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAY 592

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+N +++P+  E    L  G+     + D G+  G   P+   G L+  D IG+   +++
Sbjct: 627 IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL 686

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
                  LG   Y P   L +    G+
Sbjct: 687 ADQYAE-LGA-LYHPTAKLREMAKNGQ 711

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  288 bits (739), Expect = 1e-92
 Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 5/282 (1%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           K+K + ++G G MGSGIA   ++    V L + +   L      + +++Q  V KG +SQ
Sbjct: 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQ 370

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                    L+ + + +     D+++EA++E+  +K+++F++L+K      ILASNTS+I
Sbjct: 371 EKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTI 430

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            + ++   T    +++G HF +P  +M L+E++R   TS +       + ++  KT V  
Sbjct: 431 DLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVV 490

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDID-AGMKLGTNQPMGPLQLADFIGLDVC 242
            +  GF VNR+  P    A F +  G A    ID A  K G   PMGP +L D +G  V 
Sbjct: 491 GNCTGFAVNRMFFPYTQAAMFLVECG-ADPYLIDRAISKFGM--PMGPFRLCDLVGFGVA 547

Query: 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           ++          + +     ++    +  R G+    G + Y
Sbjct: 548 IATATQFIENFSE-RTYKSMIIPLMQEDKRAGEATRKGFYLY 588

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+     P++NEA      G+A K  D+D    +G   P    G +  AD IG     S 
Sbjct: 627 IIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSR 686

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
           +       G+  + PC  L +    G 
Sbjct: 687 LDEWSKAYGE-FFKPCAFLAERGSKGV 712

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  274 bits (703), Expect = 4e-90
 Identities = 103/287 (35%), Positives = 155/287 (54%), Gaps = 16/287 (5%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD 68
           GV+G G MG GIA      G+ V  V++DP  L  A K I+ +++K  S+   +      
Sbjct: 41  GVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--AS 98

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
           A  +LR +S+ K+L + D++VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +
Sbjct: 99  AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI 158

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           AS+T RP  VIG HF +P  +M+L+EVI    +S  T     +L+++ GK  V   +  G
Sbjct: 159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG 218

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDID-AGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           F+ NR+L P  N+ FF L  G +  ED+D    + G    MGP +++D  GLDV   I K
Sbjct: 219 FVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLEEFGF--KMGPFRVSDLAGLDVGWKIRK 275

Query: 248 -------VLHTGLGDSKYAP---CPLLVQYVDAGRLGKKRGIGVFDY 284
                   L  G    K       PL     +AGR G+K G G + Y
Sbjct: 276 GQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQY 322

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+ R L  +INEAF  L  G+A + E ID     G   P    GP+  A  +GL   L  
Sbjct: 359 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 418

Query: 246 MKVLHTGLGDSK-YAPCPLLVQYVDAGR 272
           ++  +    D     P   L + V  G 
Sbjct: 419 LQKYYRQNPDIPQLEPSDYLRRLVAQGS 446

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  273 bits (701), Expect = 9e-90
 Identities = 72/277 (25%), Positives = 129/277 (46%), Gaps = 13/277 (4%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTD 68
            ++G G MG  +A    + G++ +LV  +     +  + +     +  S  +L+      
Sbjct: 58  AIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEK 114

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
               L+ TS+   L + D+IVE+++E   +KK+LF+ L+ I K++ I  +NTSS+ +  +
Sbjct: 115 INANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEI 174

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           +S    P  ++G+HF NP  +++LVE+I G+ TS +         E   K  V   +   
Sbjct: 175 SSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKS 234

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDID-AGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           F+ NR+L    +++   +Y        ID      G    MGP+ +AD  G DV   + K
Sbjct: 235 FVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGF--LMGPMTVADMNGFDVMEKLKK 292

Query: 248 VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
                  ++   P P+  +     R G+K   G + Y
Sbjct: 293 -------ENGLEPNPIEKEMWRLKRYGRKTNKGFYKY 322

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           ++N +L P +NE +  +  GV +    ID    LG   P+   GP++     GLD   ++
Sbjct: 358 VINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANM 417

Query: 246 MKVLHTGLGD-SKYAPCPLLVQY-VDAGRLGKKRGIGVFDYR 285
           +    +     S Y     L    V  G  G   G     + 
Sbjct: 418 LVHWSSLEPKESAYIVADALKTANVSTGSSGSSGGHHHHHHH 459

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  278 bits (712), Expect = 2e-88
 Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 24/296 (8%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
            +  +GV+G G MG GIA      G+ V  V++DP  L  A K I+ +++K  S+   + 
Sbjct: 315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG 374

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                A  +LR +S+ K+L + D++VEA+ E  ++KKK+F+EL  + K  A L +NTS++
Sbjct: 375 Q--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL 432

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           ++  +AS+T RP  VIG HF +P  +M+L+EVI    +S  T     +L+++ GK  V  
Sbjct: 433 NVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVV 492

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDID-----AGMKLGTNQPMGPLQLADFIG 238
            +  GF+ NR+L P  N+ FF L  G +  ED+D      G        MGP +++D  G
Sbjct: 493 GNCYGFVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLEEFGF------KMGPFRVSDLAG 545

Query: 239 LDVCLSIMK-------VLHTGLGDSKYAP---CPLLVQYVDAGRLGKKRGIGVFDY 284
           LDV   I K        L  G    K       PL     +AGR G+K G G + Y
Sbjct: 546 LDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQY 601

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+ R L  +INEAF  L  G+A + E ID     G   P    GP+  A  +GL   L  
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697

Query: 246 MKVLHTGLGDSK-YAPCPLLVQYVDAGR 272
           ++  +    D     P   L + V  G 
Sbjct: 698 LQKYYRQNPDIPQLEPSDYLRRLVAQGS 725

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score =  183 bits (467), Expect = 3e-59
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 173 AERFGKTVVCSQDYAGFIVN--RILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGP 230
               G+  +     A   +N        INEA   +  GVAT +DID  +KLG N+P GP
Sbjct: 1   GHSKGRPQID-SSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59

Query: 231 LQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIG 280
            +LA   G +     ++ L    G   + P   L +      L   +  G
Sbjct: 60  FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEELLKAGKAEG 109

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Length = 140

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 4  KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48
           M ++ + G G++G  +A+     G D+ L+D D D   +A+  I
Sbjct: 4  GMYII-IAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI 47

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Length = 155

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 2  EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48
          ++   ++ + G G++GS IA L    G  V +VD +  A  R     
Sbjct: 17 QKSKYIV-IFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEF 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.95
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.95
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.9
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.88
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.88
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.88
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.87
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.86
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.86
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.85
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.85
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.84
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.83
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.83
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.83
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.83
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.82
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.82
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.8
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.79
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.78
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.78
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.77
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.77
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.77
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.77
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.76
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.76
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.76
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.75
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.75
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.74
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.74
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.74
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.73
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.73
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.73
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.73
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.72
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.72
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.72
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.72
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.71
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.7
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.7
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.7
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.69
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.69
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.67
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.66
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.66
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.66
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.65
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.65
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.65
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.64
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.63
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.63
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.62
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.62
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.6
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.59
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.57
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.56
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.55
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.54
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.53
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.53
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.53
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.52
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.51
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.49
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.48
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.48
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.47
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.47
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.46
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.45
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.43
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.43
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.43
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.4
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.36
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.31
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.97
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.3
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.27
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.25
3tl2_A	315	Malate dehydrogenase; center for structural genomi	99.23
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	99.22
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.19
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.17
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.17
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.16
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.14
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	99.13
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	99.12
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.09
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.09
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.08
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.08
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	99.07
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	99.06
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	99.06
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.05
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.05
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.04
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.98
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.97
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.97
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.96
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.96
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.96
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.94
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.93
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.9
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.89
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.87
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.87
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.86
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.86
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.84
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.83
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.83
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.82
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.82
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.81
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.8
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.76
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.75
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.75
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.75
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.75
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.74
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.72
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.72
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.71
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.71
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.71
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.7
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.7
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.69
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.69
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.69
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.68
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.67
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.66
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.66
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.64
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.63
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.62
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.62
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.61
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.61
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.61
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.57
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.57
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.53
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.52
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.5
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.5
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.48
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.43
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.42
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.39
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.38
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.34
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.32
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.28
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.27
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.26
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.25
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.23
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.23
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.22
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.21
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.19
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.18
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.18
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.17
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	98.16
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.15
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.15
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.14
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.1
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.1
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.09
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.09
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.09
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.09
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.08
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.07
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.06
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.05
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.05
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.03
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.01
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.01
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	98.01
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.0
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.99
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.99
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.99
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.99
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.98
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.97
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.97
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.96
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.94
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.94
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.93
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.93
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.9
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.88
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.87
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.87
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.87
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.85
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.85
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.84
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.82
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.8
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.79
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.78
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.78
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.78
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.76
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.75
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.73
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.73
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.73
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.72
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.71
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.7
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.7
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.69
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.68
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.68
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.67
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.66
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.65
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.64
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.64
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.63
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.62
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.59
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.59
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.59
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.58
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.58
4had_A	350	Probable oxidoreductase protein; structural genomi	97.56
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.55
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.54
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.53
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.53
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	97.52
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.51
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.5
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.47
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.45
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.43
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.42
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.41
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.41
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.37
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.37
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.35
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.34
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.34
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.31
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.3
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.24
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.24
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.22
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.21
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.21
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.21
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.18
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.17
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.17
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.15
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.14
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.14
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.12
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.11
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.08
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	97.08
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.06
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.04
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.01
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.99
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.97
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.97
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.96
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.94
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.94
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.94
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.93
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.89
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.88
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.87
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.86
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.85
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.81
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.81
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.8
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.77
1lnq_A	336	MTHK channels, potassium channel related protein;	96.77
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.77
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.76
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.75
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.72
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.71
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.66
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.64
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.63
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.62
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.61
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.61
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.59
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.58
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.58
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.58
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.57
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.56
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.55
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.54
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.53
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.52
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	96.52
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.5
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	96.5
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.48
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.46
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.44
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.44
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.42
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.41
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.41
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.41
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.4
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.38
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.37
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.37
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.35
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.34
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.34
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.3
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.3
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	96.29
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.29
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.27
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.27
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.26
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.26
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.26
3dme_A	369	Conserved exported protein; structural genomics, P	96.26
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.24
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.23
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.23
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.22
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.21
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.21
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.21
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.21
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.2
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.2
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.2
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.19
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	96.19
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.19
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.19
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.18
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.18
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.16
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.15
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.15
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.14
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.14
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.13
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.11
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.11
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.1
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.1
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.09
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.09
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.09
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.08
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.07
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.06
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.06
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.05
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.05
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.05
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.03
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.02
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.02
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.01
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.01
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.01
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.01
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.01
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.01
3atr_A	453	Conserved archaeal protein; saturating double bond	96.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	95.99
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.99
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.98
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.98
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.98
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.96
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.96
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.96
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	95.96
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	95.95
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.95
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.94
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.93
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.93
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.92
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	95.89
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.88
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	95.87
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.86
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.85
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.85
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.84
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.84
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.83
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.83
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.83
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.82
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.82
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.81
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.81
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.81
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	95.81
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.81
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	95.8
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.79
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.79
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.79
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	95.77
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.77
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.77
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	95.77
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.77
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.77
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	95.76
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.76
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.76
4f6c_A	427	AUSA reductase domain protein; thioester reductase	95.75
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.75
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	95.75
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.74
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	95.74
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.74
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.74
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.73
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.73
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.72
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	95.72
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.71
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.71
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.7
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.7
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.7
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.69
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	95.69
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.68
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.68
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.67
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.67
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.66
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.66
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.66
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.65
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	95.65
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.65
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.64
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.64

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=2.4e-63  Score=459.38  Aligned_cols=287  Identities=38%  Similarity=0.622  Sum_probs=272.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |+.++++|+|||+|.||.+||..|+++|++|++||+++++++++.+++++.++++++.|.++.++.+....+++.+++++
T Consensus         1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (483)
T 3mog_A            1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH   80 (483)
T ss_dssp             ---CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH
Confidence            54457899999999999999999999999999999999999999999999999999999999888888889999999998


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~  160 (297)
                      ++++||+||+|+|++.++|+++++++.+.+++++|++||||+++++++++.+.+|.+++|+|||+|+++++++|++.+..
T Consensus        81 ~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~  160 (483)
T 3mog_A           81 ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLA  160 (483)
T ss_dssp             GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSS
T ss_pred             HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchH
Q 022434          161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD  240 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~  240 (297)
                      +++++++.+.++++.+|+.+++++|.|||++||++.++++||+.++++|++|+++||.+++.|+|||+|||+++|.+|+|
T Consensus       161 Ts~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld  240 (483)
T 3mog_A          161 TAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQD  240 (483)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHH
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434          241 VCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       241 ~~~~~~~~~~~~~-~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~  287 (297)
                      +.+.+++.+++.+ ++++|.|++++++|+++|++|+|+|+|||+|+++
T Consensus       241 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~  288 (483)
T 3mog_A          241 VNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAE  288 (483)
T ss_dssp             HHHHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSC
T ss_pred             HHHHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCC
Confidence            9999999998876 5668999999999999999999999999999763

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=9.7e-63  Score=449.12  Aligned_cols=275  Identities=27%  Similarity=0.455  Sum_probs=257.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||.+||..|+++|++|++||++++   ++.+++++.+++++++|.++.++.+....++++++++++++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~  129 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLS  129 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHc
Confidence            468999999999999999999999999999999998   45667888899999999999888888889999999998899


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||+|+||+.++|++++++|.+.+++++||+||||+++++++++.+.+|++++|+|||+|++.++++||+++..|++
T Consensus       130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~Ts~  209 (460)
T 3k6j_A          130 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSS  209 (460)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSSCCH
T ss_pred             cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+|++|++++|.|||++||++.++++||+.++++.++++++||.+++ ++|+|+|||+++|++|+|+++
T Consensus       210 e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~-~~G~pmGPf~l~D~vGlD~~~  288 (460)
T 3k6j_A          210 QAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIIT-NFGFLMGPMTVADMNGFDVME  288 (460)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH-HHTBSSCHHHHHHHHCTHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-HcCCCcCHHHHHHHhchHHHH
Confidence            9999999999999999999999999999999999999999999554599999999998 899999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~  289 (297)
                      .+.+.+    .   +.|++++++|+++|++|+|+|+|||+|+++++
T Consensus       289 ~i~~~~----~---~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~  327 (460)
T 3k6j_A          289 KLKKEN----G---LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQ  327 (460)
T ss_dssp             HHHHHS----C---CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTC
T ss_pred             HHHHHh----c---cCchHHHHHHHHCCCCeeecCCEEEECCCCCC
Confidence            988765    2   35679999999999999999999999986543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.8e-62  Score=470.12  Aligned_cols=282  Identities=35%  Similarity=0.539  Sum_probs=260.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||++||..++.+|++|+++|++++.+++..+++.+.+++.++++..+.  .+....++..+++.++++
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~  392 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG--QASAKPKLRFSSSTKELS  392 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCEEEESCGGGGG
T ss_pred             cccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccc--hhhhhhhhcccCcHHHHh
Confidence            478999999999999999999999999999999999999999999999988887765443  334567889999999999


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+|||+|+|++++|+++|++|++++++++|++||||++++++|++.+.+|+|++|+||||||+.+++|||+++..|++
T Consensus       393 ~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~  472 (742)
T 3zwc_A          393 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSP  472 (742)
T ss_dssp             SCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCH
T ss_pred             hCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++.+.+||.|++++|.|||++||++.++++||++++++| ++++++|.+++ ++|||+|||+++|.+|+|+.+
T Consensus       473 e~~~~~~~~~~~lgK~pV~vkd~pGFi~NRi~~~~~~ea~~l~~eG-~~~~~id~a~~-~~G~pmGPf~l~D~vGlDv~~  550 (742)
T 3zwc_A          473 TTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGW  550 (742)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCSTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCccHHHHhhHHHHHHHHHHHcC-CCHHHHHHHHH-HcCCCCChHHHHHHhCHHHHH
Confidence            9999999999999999999999999999999999999999999998 68999999997 699999999999999999999


Q ss_pred             HHHHHHHhhcCC----------CCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434          244 SIMKVLHTGLGD----------SKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       244 ~~~~~~~~~~~~----------~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~  289 (297)
                      .+.+.++...++          ..+++++++++|+++|++|+|+|+|||+|+++++
T Consensus       551 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~  606 (742)
T 3zwc_A          551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLG  606 (742)
T ss_dssp             HHHHHTTSSSTTSCTTCCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTC
T ss_pred             HHHHHHHhhCcccCccchhhhcccccccHHHHHHHHCCCccccCCCeeEECCCCCC
Confidence            999987655432          1245678999999999999999999999987544

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=1.1e-60  Score=419.91  Aligned_cols=285  Identities=40%  Similarity=0.611  Sum_probs=263.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-----hhcccCCCcEE
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-----VGTDAPRRLRC   75 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~i~~   75 (297)
                      |..++++|+|||+|.||.+||..|+++|++|++||+++++++.+.+.+++.++.+++.|.++..     +.+....++++
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            5556789999999999999999999999999999999999999988888888988999876543     33334456788


Q ss_pred             ecCcc-ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE
Q 022434           76 TSNLK-DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE  154 (297)
Q Consensus        76 ~~~~~-~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve  154 (297)
                      +++++ .+++||+||+|+|++.++++.+++++.+.+++++||++++|+++++++++.+.++.++++.||++|++.+++++
T Consensus        91 ~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~  170 (302)
T 1f0y_A           91 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVE  170 (302)
T ss_dssp             ESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEE
T ss_pred             ecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEE
Confidence            88887 48999999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             EecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHH
Q 022434          155 VIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLA  234 (297)
Q Consensus       155 i~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~  234 (297)
                      ++.+..+++++++.+.++++.+|+.++++++.+|+++||++.+++||+++++++|++++++||.+++.|+|||+|||+++
T Consensus       171 i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~  250 (302)
T 1f0y_A          171 VIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL  250 (302)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022434          235 DFIGLDVCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       235 D~~Gl~~~~~~~~~~~~~~-~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~  285 (297)
                      |.+|+|+++.+++.+++.+ ++++|+|+++|++|+++|++|+|+|+|||+|+
T Consensus       251 D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            9999999999999999988 77679999999999999999999999999994

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=5.7e-61  Score=416.01  Aligned_cols=259  Identities=31%  Similarity=0.482  Sum_probs=241.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -++|+|||+|.||.+||.+|+ +|++|++||+++++++++.+.             +    .+..+++++++++++++++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------------l----~~~~~~~i~~~~~~~~~~~   73 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------------I----PEELLSKIEFTTTLEKVKD   73 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------------S----CGGGGGGEEEESSCTTGGG
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------------H----HHHHhCCeEEeCCHHHHcC
Confidence            378999999999999999999 999999999999988877433             1    2334467788888888999


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHH
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDE  164 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~  164 (297)
                      ||+||+|+||+.++|+.++++++..  +++|+++|||+++++++++.+.+|.+++|+|||+|++.++++|++++..|+++
T Consensus        74 aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~  151 (293)
T 1zej_A           74 CDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSK  151 (293)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHH
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHH
Confidence            9999999999999999999999887  89999999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc---hHHHHHHhhchHH
Q 022434          165 TFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPM---GPLQLADFIGLDV  241 (297)
Q Consensus       165 ~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~  241 (297)
                      ++++++++++.+|++|++++|.  |++||++.++++||+.++++|+ ++++||.+++.|+|+|+   |||+++|.+|+|+
T Consensus       152 ~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv-~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~  228 (293)
T 1zej_A          152 TVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGV-RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDV  228 (293)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHH
Confidence            9999999999999999999986  9999999999999999999987 99999999999999999   9999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022434          242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~  286 (297)
                      +..+++.+++.+++++|+|+++|++|+++|++|+|+|+|||+|++
T Consensus       229 ~~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          229 AYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            999999999999987899999999999999999999999999965

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=6.5e-61  Score=417.50  Aligned_cols=280  Identities=27%  Similarity=0.457  Sum_probs=260.7

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCChhhhcccCCCcEEecCc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKG-QLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+ ++++|+|||+|.||++||..|+++|++|++||+++++++.+.+.+++.++++++.| .++..+.+....++..++++
T Consensus         1 Mm-~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~   79 (283)
T 4e12_A            1 MT-GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDL   79 (283)
T ss_dssp             CC-SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCH
Confidence            54 47899999999999999999999999999999999999999999999999998888 77766666666778888898


Q ss_pred             cc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecC
Q 022434           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRG  158 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~  158 (297)
                      ++ +++||+||+|+|++.+.++.+++++.+.+++++|+++|||+++++++++.+.++.+++++||++|++.++++|++++
T Consensus        80 ~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~  159 (283)
T 4e12_A           80 AQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGT  159 (283)
T ss_dssp             HHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEEC
T ss_pred             HHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeC
Confidence            76 89999999999999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhh
Q 022434          159 ADTSDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI  237 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~  237 (297)
                      ..+++++++.++++++.+|+.++++ ++.|||++||++.++++||+.++++|++++++||.+++.|+|+|+|||+++|++
T Consensus       160 ~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~  239 (283)
T 4e12_A          160 TKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIV  239 (283)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhc
Confidence            9999999999999999999999999 799999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022434          238 GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       238 Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~  284 (297)
                      |+|+++.++++   ..++++|+|++++++|+++|++|+|+|+|||+|
T Consensus       240 Gld~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          240 GLTTAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             CHHHHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             cHHHHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            99999999883   233335788999999999999999999999999

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-58  Score=445.73  Aligned_cols=279  Identities=27%  Similarity=0.485  Sum_probs=248.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||.+||..|+++||+|++||+++++++.+.+.+++.++++++.|.+++++.+....+++.+++++.++
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~  390 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFR  390 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGT
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHC
Confidence            46789999999999999999999999999999999999999899999999999999888888888889999999998799


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.+++++.+.+++++|+++|||+++++++++.+.+|++++|.|||+|++.++++|++.+..|++
T Consensus       391 ~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~  470 (725)
T 2wtb_A          391 DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSA  470 (725)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+|+.|++++|.|||++||++.++++|++.++++| +++++||.++ .++|+|+|||+++|.+|+|+++
T Consensus       471 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G-~~~e~id~~~-~~~g~p~Gp~~l~D~vGld~~~  548 (725)
T 2wtb_A          471 QVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECG-ADPYLIDRAI-SKFGMPMGPFRLCDLVGFGVAI  548 (725)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH-HHHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH-HHcCCCCCHHHHHHHhchHHHH
Confidence            9999999999999999999999999999999999999999999997 7999999999 7999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022434          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~  285 (297)
                      .+++.+++.+++..|.| +++++|+++|++|+|+|+|||+|+
T Consensus       549 ~i~~~~~~~~~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y~  589 (725)
T 2wtb_A          549 ATATQFIENFSERTYKS-MIIPLMQEDKRAGEATRKGFYLYD  589 (725)
T ss_dssp             HHHHHHHHHSGGGCCCC-THHHHHHTTC--------------
T ss_pred             HHHHHHHHhcCCccCCh-HHHHHHHHCCCceecCCceeEeCC
Confidence            99999999888722898 999999999999999999999996

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=3e-58  Score=401.94  Aligned_cols=239  Identities=27%  Similarity=0.413  Sum_probs=226.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCCcEEecCccc-
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-VGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-   81 (297)
                      ...+|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.++++++.|.++.. ..+..+.+|+.++++++ 
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            3689999999999999999999999999999999999999999999999999999988754 45667788999999976 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT  161 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~  161 (297)
                      +++||+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+||||||+++++|||+++..|
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T  164 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET  164 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhh
Q 022434          162 SDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFI  237 (297)
Q Consensus       162 ~~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~  237 (297)
                      ++++++++.++++.+|++|+++ +|.||||+||++.++++||++++++|++++++||.+++.|+|+|   +|||+++|++
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~  244 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN  244 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence            9999999999999999999855 89999999999999999999999999999999999999999987   8999999999


Q ss_pred             chHHH
Q 022434          238 GLDVC  242 (297)
Q Consensus       238 Gl~~~  242 (297)
                      |++..
T Consensus       245 G~~~~  249 (319)
T 3ado_A          245 AEGML  249 (319)
T ss_dssp             TTSHH
T ss_pred             CccHH
Confidence            97754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=4.3e-58  Score=443.02  Aligned_cols=279  Identities=34%  Similarity=0.518  Sum_probs=266.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++++|+|||+|.||.+||..|+++||+|++||+++++++.+.+++++.+++++++|.+++++.+....+++.+++++.++
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~  392 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFG  392 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGG
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHC
Confidence            46789999999999999999999999999999999999998899999999999999988877777778888999997799


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.+++++.+.+++++||+||||+++++++++.+.+|++++|+|||+|++.++++|++.+..|++
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~  472 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSD  472 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCH
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+|+.+++++|.|||++||++.++++|++.++++| +++++||.++ .++|+|+|||+++|.+|+|+++
T Consensus       473 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G-~~~~~id~~~-~~~G~p~Gp~~l~D~vGld~~~  550 (715)
T 1wdk_A          473 LAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVM-EKFGWPMGPAYLMDVVGIDTGH  550 (715)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH-HHHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCC-CCHHHHHHHH-HHcCCCCCHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999999997 7999999999 7899999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCc--HHHHHHHHcCCCCcccCCcccccC
Q 022434          244 SIMKVLHTGLGDSKYAPC--PLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~p~--~~l~~~~~~g~~G~~~g~Gfy~~~  285 (297)
                      .+++.+++.+++ +|.|+  +++++|+++|++|+|+|+|||+|+
T Consensus       551 ~i~~~~~~~~~~-~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~  593 (715)
T 1wdk_A          551 HGRDVMAEGFPD-RMKDDRRSAIDALYEAKRLGQKNGKGFYAYE  593 (715)
T ss_dssp             HHHHHHHHHCHH-HHCCSSCCHHHHHHHTTCCBTTTTBSSSEEC
T ss_pred             HHHHHHHHhcCC-ccCCChHHHHHHHHhCchhhhcCCcEEEecc
Confidence            999999988877 78998  999999999999999999999996

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=3.4e-56  Score=411.45  Aligned_cols=280  Identities=35%  Similarity=0.542  Sum_probs=250.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+.+++.++.+++.|.++.++.+....  ..++++++++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~--~i~~~~~~~~  113 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKL--RFSSSTKELS  113 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCE--EEESCGGGGT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--hhcCCHHHHC
Confidence            46799999999999999999999999999999999999999888888888888777655433333333  3467777799


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.+++++.+.+++++||++|||+++++++++.+.+|.+++|+|||+|++.++++|++.+..|++
T Consensus       114 ~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~  193 (463)
T 1zcj_A          114 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSP  193 (463)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccceeEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.++++++.+|++++++++.+||++||++.++++|++.++++| +++++||.+++ ++|+|+|||+++|.+|+|+++
T Consensus       194 e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~G-~~~~~id~~~~-~~g~p~Gp~~l~D~~GlD~~~  271 (463)
T 1zcj_A          194 TTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGW  271 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH-HcCCCCcHHHHHHHcchHHHH
Confidence            9999999999999999999999999999999999999999999998 89999999998 899999999999999999999


Q ss_pred             HHHHHHH---hh-------cCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434          244 SIMKVLH---TG-------LGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       244 ~~~~~~~---~~-------~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~  287 (297)
                      .+++.+.   ..       ..++.+++++++++|+++|++|+|+|+|||+|+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~Gfy~y~~~  325 (463)
T 1zcj_A          272 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKP  325 (463)
T ss_dssp             HHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBSSEEESST
T ss_pred             HHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCeeccCCCC
Confidence            9998872   22       12222355789999999999999999999999643

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.95  E-value=1.1e-27  Score=221.37  Aligned_cols=154  Identities=31%  Similarity=0.450  Sum_probs=138.2

Q ss_pred             cCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHH
Q 022434          119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPM  198 (297)
Q Consensus       119 ~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~  198 (297)
                      .+++.+.++.+  ..+|.++++.|+++    .+++|++.+..|++++++.+.++++.+|+.|+.++|.||||+||++.++
T Consensus       324 ~~~~~~~~~~~--~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~  397 (483)
T 3mog_A          324 ETQGETAQALA--IRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI  397 (483)
T ss_dssp             ECSSSCHHHHH--HHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred             ccCCcchHHHh--hccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence            45555555443  34578899999987    6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccC
Q 022434          199 INEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRG  278 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g  278 (297)
                      +|||++++++|+++++|||.++++|+|||+|||+|+|.+|+|.++.+++.|++.+++++|+|+++|++|++.|++|..-|
T Consensus       398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~~  477 (483)
T 3mog_A          398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESEG  477 (483)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC----
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999997665443

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.95  E-value=4.4e-29  Score=185.43  Aligned_cols=106  Identities=27%  Similarity=0.362  Sum_probs=90.1

Q ss_pred             HcCCeEE-EeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhc
Q 022434          175 RFGKTVV-CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL  253 (297)
Q Consensus       175 ~lg~~~i-~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~  253 (297)
                      .++|.++ .++|.||||+||++.+++|||++++++|+++++|||.+++.|+|||+|||+++|.+|++++..+++.+++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888 889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHcCCCCcccCCc
Q 022434          254 GDSKYAPCPLLVQYVDAGRLGKKRGIG  280 (297)
Q Consensus       254 ~~~~~~p~~~l~~~~~~g~~G~~~g~G  280 (297)
                      ++++|+|+++|++|+++|++|+|+|+|
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence            887899999999999999999999988

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.90  E-value=2.9e-23  Score=180.93  Aligned_cols=191  Identities=18%  Similarity=0.269  Sum_probs=143.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      |+||+|||+|.||.+||.+|+++||+|++|||++++.+.+           .+.|.             +..+++.+ ++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l-----------~~~Ga-------------~~a~s~~e~~~   58 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-----------VAAGA-------------SAARSARDAVQ   58 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHTTC-------------EECSSHHHHHT
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HHcCC-------------EEcCCHHHHHh
Confidence            5799999999999999999999999999999999988776           66665             56777777 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHH--HHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc--------
Q 022434           84 SADIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK--------  151 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~--------  151 (297)
                      +||+||.|+|++..++..++..  +.+.++++.+|+ ++|+++.. .++++.+..    .|.+|++.| +++        
T Consensus        59 ~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~----~G~~~lDaP-VsGg~~~A~~G  133 (300)
T 3obb_A           59 GADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARE----RGLAMLDAP-VSGGTAGAAAG  133 (300)
T ss_dssp             TCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHT----TTCEEEECC-EESCHHHHHHT
T ss_pred             cCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCEEEecC-CCCCHHHHHhC
Confidence            9999999999988876655542  445556666555 43433333 356665532    246677666 222        


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      .+.++.+  ++++++++++++|+.+|++++++++. .|   .++|+++.    ..+.|++.++++.+++++.+-.++..+
T Consensus       134 ~L~imvG--G~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~  211 (300)
T 3obb_A          134 TLTFMVG--GDAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRS  211 (300)
T ss_dssp             CEEEEEE--SCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred             CEEEEEe--CCHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence            2445555  79999999999999999999999864 22   36777654    357899999999889999999888866


Q ss_pred             cCC
Q 022434          224 TNQ  226 (297)
Q Consensus       224 ~g~  226 (297)
                      .+.
T Consensus       212 ~~~  214 (300)
T 3obb_A          212 SGG  214 (300)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.88  E-value=1.8e-22  Score=175.93  Aligned_cols=191  Identities=17%  Similarity=0.234  Sum_probs=135.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +||+|||+|.||.+||.+|+++||+|++|||++++.+.+           .+.|.             ...+++.+ ++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G~-------------~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLGA-------------TVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTTC-------------EECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcCC-------------eEeCCHHHHHhc
Confidence            489999999999999999999999999999999887654           44454             46677766 889


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCC-------ceEEE
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KLVEV  155 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~vei  155 (297)
                      ||+||.|+|++..+...+...+....+++.+++ ++|+++.. .++++.+..    .|.+|++.|-..       +...+
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~----~g~~~ldapVsGg~~~a~~g~l~i  137 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEW----YGAHYVGAPIFARPEAVRAKVGNI  137 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHH----TTCEEEECCEECCHHHHHHTCCEE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHh----cCCceecCCcCCCcccccccccee
Confidence            999999999988776666666666667776655 33333332 355554421    244555555111       12345


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccCC
Q 022434          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTNQ  226 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~  226 (297)
                      +.+  ++++++++++++|+.+|++++++++.+|     .++|+++.    ..++|++.++++.++|++.+-.++..+.+.
T Consensus       138 m~g--G~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~  215 (297)
T 4gbj_A          138 CLS--GNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFA  215 (297)
T ss_dssp             EEE--ECHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTC
T ss_pred             ecc--cchhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence            555  7899999999999999999999986554     36777654    467899999999889999998888766543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.88  E-value=7.7e-22  Score=169.60  Aligned_cols=213  Identities=13%  Similarity=0.086  Sum_probs=154.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++|+|||+|.||..+|..|+++|++ |.+||+++++++.+.+.          .|             +...+++++ +
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~   66 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK----------VE-------------AEYTTDLAEVN   66 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH----------TT-------------CEEESCGGGSC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH----------cC-------------CceeCCHHHHh
Confidence            36899999999999999999999999 99999999887665211          12             245667765 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCC-----CCCceEEEec
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP-----PLMKLVEVIR  157 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~-----~~~~~vei~~  157 (297)
                      +++|+||+|+|++.  ..+++.++.+.+++++++++++++++.+.+.+.+..+   -..|++.|.     ...+...++.
T Consensus        67 ~~~Dvvi~av~~~~--~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v  141 (266)
T 3d1l_A           67 PYAKLYIVSLKDSA--FAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFI  141 (266)
T ss_dssp             SCCSEEEECCCHHH--HHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEE
T ss_pred             cCCCEEEEecCHHH--HHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEE
Confidence            89999999999874  3678888888888899999999988887776655432   225666541     1222223322


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccc--hhh-----hHHHHHH--HHHHHHHHHHHcCCCCHHHHH--------HHH
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDY--AGF-----IVNRILM--PMINEAFFTLYTGVATKEDID--------AGM  220 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~--~g~-----i~nri~~--~~~~Ea~~l~~~g~~~~~~id--------~a~  220 (297)
                       .+++++.++.++++++.+|++++++++.  +++     +++++..  ..+.|+  ++++.+.+++++.        .++
T Consensus       142 -~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~~~  218 (266)
T 3d1l_A          142 -EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAE--LLKKYNLPFDVMLPLIDETARKVH  218 (266)
T ss_dssp             -EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCGGGGHHHHHHHHHHHH
T ss_pred             -ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHHHH
Confidence             2368999999999999999999988754  345     7777763  444555  4555446887773        344


Q ss_pred             hhcc-CCCchHHHHHHhhchHHHHHHHHH
Q 022434          221 KLGT-NQPMGPLQLADFIGLDVCLSIMKV  248 (297)
Q Consensus       221 ~~g~-g~p~Gp~~~~D~~Gl~~~~~~~~~  248 (297)
                      +.+. +.+.||+...|..+++..+..++.
T Consensus       219 ~~~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          219 ELEPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             HSCHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             hcChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence            4443 457799999999999998887753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.88  E-value=1e-22  Score=179.43  Aligned_cols=198  Identities=19%  Similarity=0.266  Sum_probs=156.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||.++|..|+.+|+ +|++||+++++++.....+.+...            ......++..++++++++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~a~~   71 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDYADIS   71 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCHHHhC
Confidence            4699999999999999999999999 999999999877653222211110            011234567778887799


Q ss_pred             CCcEEEEec--------------cccHHHHHHHHHHHHhhcCCCeEE--EecCCCCcHHHHhhhcCC-CCeEEEeecCCC
Q 022434           84 SADIIVEAI--------------VESEDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATSR-PCQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~~-~~~~~g~h~~~p  146 (297)
                      +||+||+++              +++..+++++++++.++++ ++++  ++|++.+....+.+.... |.|++|+     
T Consensus        72 ~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~-----  145 (317)
T 2ewd_A           72 GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM-----  145 (317)
T ss_dssp             TCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES-----
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec-----
Confidence            999999999              7888889999999999876 7766  577666666667776655 5677654     


Q ss_pred             CCCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHH---HHHHHHHHH-------HHHHHcCCCCHHHH
Q 022434          147 PPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR---ILMPMINEA-------FFTLYTGVATKEDI  216 (297)
Q Consensus       147 ~~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nr---i~~~~~~Ea-------~~l~~~g~~~~~~i  216 (297)
                                   .|..++.+....+.+.+|+.   .++.++|++++   .+.++++++       ..++++|.++++++
T Consensus       146 -------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~i  209 (317)
T 2ewd_A          146 -------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQI  209 (317)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHH
T ss_pred             -------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHH
Confidence                         36777888888888999987   47889999999   888899998       88999998999999


Q ss_pred             HHHHhhccCCCchHHHHHHhhch
Q 022434          217 DAGMKLGTNQPMGPLQLADFIGL  239 (297)
Q Consensus       217 d~a~~~g~g~p~Gp~~~~D~~Gl  239 (297)
                      |.+++.+   ++||++++|..|.
T Consensus       210 d~~~~~~---~~~~~ei~~~~g~  229 (317)
T 2ewd_A          210 DEIVCHT---RIAWKEVADNLKT  229 (317)
T ss_dssp             HHHHHHH---HHHHHHHHHHHSS
T ss_pred             HHHHHHH---HhhHHHHHHhhcC
Confidence            9998864   7899999998775

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.86  E-value=2.4e-20  Score=161.29  Aligned_cols=152  Identities=14%  Similarity=0.217  Sum_probs=128.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSK-GQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+|.||.+|+..|+++|+   +|++||+++++++.+.           +. |             +..+++..
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~-----------~~~g-------------i~~~~~~~   58 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFK-----------EKCG-------------VHTTQDNR   58 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHH-----------HTTC-------------CEEESCHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHH-----------HHcC-------------CEEeCChH
Confidence            4689999999999999999999999   9999999999877662           22 3             24555655


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-Eec
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIR  157 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~  157 (297)
                      + ++++|+||+|+|..  ...+++.++.+. ++++++|+|++++++++.+.+.+..+.+++++||..|..+...++ +++
T Consensus        59 ~~~~~aDvVilav~p~--~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~  136 (280)
T 3tri_A           59 QGALNADVVVLAVKPH--QIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFA  136 (280)
T ss_dssp             HHHSSCSEEEECSCGG--GHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEEC
T ss_pred             HHHhcCCeEEEEeCHH--HHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEe
Confidence            4 88999999999753  367889999988 888889999999999999999888778999999998887776665 566


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEE
Q 022434          158 GADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      +..++++.++.++++|+.+|+.+++
T Consensus       137 ~~~~~~~~~~~v~~l~~~iG~~~~v  161 (280)
T 3tri_A          137 NETVDKDQKNLAESIMRAVGLVIWV  161 (280)
T ss_dssp             CTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCeEEE
Confidence            7888999999999999999985544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.86  E-value=1e-20  Score=165.56  Aligned_cols=196  Identities=18%  Similarity=0.280  Sum_probs=137.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..++|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|..            ..++++++ +
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~~------------~~~~~~~e~~   62 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANL-----------LAEGAC------------GAAASAREFA   62 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTCS------------EEESSSTTTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHcCCc------------cccCCHHHHH
Confidence            35789999999999999999999999999999999988766           344431            22566666 7


Q ss_pred             CCCcEEEEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCC-CCC---CCceE
Q 022434           83 HSADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMN-PPP---LMKLV  153 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~-p~~---~~~~v  153 (297)
                      ++||+||+|+|++..++..++  +++.+.++++++|+..++..+.  ..+.+.+. ....++. +++. .|.   ...+.
T Consensus        63 ~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~  141 (303)
T 3g0o_A           63 GVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMT  141 (303)
T ss_dssp             TTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEE
T ss_pred             hcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeE
Confidence            899999999998776655444  5566777788877644333222  34444442 2234444 3321 110   01123


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh--h---hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVCSQDYAG--F---IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g--~---i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                       ++.+  ++++.+++++++++.+|++++++++.+|  .   ++|+++    ...++|++.++++.+++++++..++..+.
T Consensus       142 -~~~g--g~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~  218 (303)
T 3g0o_A          142 -VMAS--GSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAA  218 (303)
T ss_dssp             -EEEE--CCHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             -EEeC--CCHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence             3333  5789999999999999999999986443  2   445544    35689999999998899999999988765


Q ss_pred             CC
Q 022434          225 NQ  226 (297)
Q Consensus       225 g~  226 (297)
                      +.
T Consensus       219 ~~  220 (303)
T 3g0o_A          219 GN  220 (303)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.85  E-value=9.5e-21  Score=165.24  Aligned_cols=190  Identities=16%  Similarity=0.215  Sum_probs=133.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|.             ..++++++ ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~   70 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPL-----------AEAGA-------------TLADSVADVAA   70 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHH-----------HHTTC-------------EECSSHHHHTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHCCC-------------EEcCCHHHHHh
Confidence            4689999999999999999999999999999999887765           33342             56777777 66


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCC-CCeEEEeecCCCCC---CCceEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMNPPP---LMKLVEVIR  157 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~p~~---~~~~vei~~  157 (297)
                       ||+||+|+|++..++ .++.++.+.++++++|+..++..+.  .++.+.+.. ..+++....+.+|.   ...+..++.
T Consensus        71 -aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g  148 (296)
T 3qha_A           71 -ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVG  148 (296)
T ss_dssp             -SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEE
T ss_pred             -CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEec
Confidence             999999999876654 4557788878888777644433322  345544422 22333322121111   012333433


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHH------HHHHhhc
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDI------DAGMKLG  223 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~i------d~a~~~g  223 (297)
                         ++++.+++++++++.+|++++++++. .+   .++++++.    ..++|++.++++.+++++++      ..++..+
T Consensus       149 ---g~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~  225 (296)
T 3qha_A          149 ---ADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGG  225 (296)
T ss_dssp             ---CCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCC
T ss_pred             ---CCHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcC
Confidence               57899999999999999999998762 22   14555443    45899999999988999999      8887643

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.85  E-value=1.3e-20  Score=165.47  Aligned_cols=193  Identities=11%  Similarity=0.157  Sum_probs=136.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|.             ..++++++ +
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g~-------------~~~~~~~~~~   75 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDEL-----------VEHGA-------------SVCESPAEVI   75 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-----------HHTTC-------------EECSSHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHCCC-------------eEcCCHHHHH
Confidence            46799999999999999999999999999999999987765           33343             45667766 7


Q ss_pred             CCCcEEEEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCcH---HHHhhhcC-CCCeEEEeecCC-CCC---CCce
Q 022434           83 HSADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI---TRLASATS-RPCQVIGMHFMN-PPP---LMKL  152 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~g~h~~~-p~~---~~~~  152 (297)
                      ++||+||+|+|++..++..++  .++.+.++++++|+..+ +.++   ..+.+.+. ...+++. |++. .+.   ...+
T Consensus        76 ~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l  153 (310)
T 3doj_A           76 KKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQL  153 (310)
T ss_dssp             HHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCE
T ss_pred             HhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCe
Confidence            899999999998777665444  55667777777776443 3333   24444332 2223333 2211 110   0112


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-----hhHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-----~i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      ..++.   ++++++++++++++.+|++++++++ +|     .++++++    ...++|++.++++.+++++++..++..+
T Consensus       154 ~i~~g---g~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~  229 (310)
T 3doj_A          154 IILAA---GDKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLG  229 (310)
T ss_dssp             EEEEE---ECHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             EEEEc---CCHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            33333   4789999999999999999999976 33     1444443    3568999999999889999999998876


Q ss_pred             cCC
Q 022434          224 TNQ  226 (297)
Q Consensus       224 ~g~  226 (297)
                      .+.
T Consensus       230 ~~~  232 (310)
T 3doj_A          230 AMT  232 (310)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.84  E-value=1e-19  Score=154.62  Aligned_cols=190  Identities=16%  Similarity=0.208  Sum_probs=140.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|.||.+|+..|+++|+    +|++|||++++++.+.+.          .|.             ...++.++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~----------~g~-------------~~~~~~~e   59 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK----------YGL-------------TTTTDNNE   59 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH----------HCC-------------EECSCHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH----------hCC-------------EEeCChHH
Confidence            589999999999999999999999    999999999987765221          132             45566655


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc-eEEEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vei~~~~  159 (297)
                       ++++|+||+|++...  ..+++.++.+.++++++|+|.+++++.+.+.+.+..+.++++.||..|..... ...++.+.
T Consensus        60 ~~~~aDvVilav~~~~--~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~  137 (247)
T 3gt0_A           60 VAKNADILILSIKPDL--YASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE  137 (247)
T ss_dssp             HHHHCSEEEECSCTTT--HHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred             HHHhCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence             788999999997543  66788888888888989999999999988888877667899999988886655 56778888


Q ss_pred             CCcHHHHHHHHHHHHHcCCeEEEeccchhh----hHH--HHHHHHHHHHHHH-HHcCCCCHHHHHHHHh
Q 022434          160 DTSDETFRATKALAERFGKTVVCSQDYAGF----IVN--RILMPMINEAFFT-LYTGVATKEDIDAGMK  221 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~----i~n--ri~~~~~~Ea~~l-~~~g~~~~~~id~a~~  221 (297)
                      .++++.++.++++|+.+|+ ++++.+..-.    +..  ......+.|++.. ..+.+.++++...++.
T Consensus       138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~  205 (247)
T 3gt0_A          138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAA  205 (247)
T ss_dssp             TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            8999999999999999998 5555332111    110  0112334555544 4455577777666655

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.83  E-value=2.2e-20  Score=162.28  Aligned_cols=192  Identities=15%  Similarity=0.167  Sum_probs=137.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.++|..|+++||+|++||+++++++.+           .+.|.             ..++++++ +++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEEL-----------AALGA-------------ERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-----------HHTTC-------------EECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------eecCCHHHHHhc
Confidence            589999999999999999999999999999999987765           33332             56677766 788


Q ss_pred             CcEEEEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCcH---HHHhhhcC-CCCeEEEeecCCC-CC---CCceEE
Q 022434           85 ADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI---TRLASATS-RPCQVIGMHFMNP-PP---LMKLVE  154 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~g~h~~~p-~~---~~~~ve  154 (297)
                      ||+||+|+|++..++..++  .++.+.++++++|+.. |+.++   ..+.+.+. ...+++. |++.. |.   ...+..
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  135 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII  135 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence            9999999998777665554  6677778788777644 34333   24444332 2233444 33221 10   011233


Q ss_pred             EecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccCC
Q 022434          155 VIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTNQ  226 (297)
Q Consensus       155 i~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~  226 (297)
                      ++ +  ++++++++++++++.+|++++++++. .+   .++++++.    ..++|++.++++.+++++++..++..+.+.
T Consensus       136 ~~-g--g~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~  212 (287)
T 3pef_A          136 LA-A--GDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMA  212 (287)
T ss_dssp             EE-E--ECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTC
T ss_pred             EE-e--CCHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            33 3  57899999999999999999998762 22   24555544    378999999999889999999998876543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.83  E-value=2e-20  Score=164.34  Aligned_cols=190  Identities=16%  Similarity=0.170  Sum_probs=129.3

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD--PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..+++|+|||+|.||.+||..|+++|| +|++||++  +++.+.+           .+.|.             ..++++
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~-----------~~~g~-------------~~~~~~   77 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRA-----------EELGV-------------SCKASV   77 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHH-----------HHTTC-------------EECSCH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHH-----------HHCCC-------------EEeCCH
Confidence            346799999999999999999999999 99999997  4555543           33343             456676


Q ss_pred             cc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-C--CCeEEEeecCCCCC--CCc
Q 022434           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-R--PCQVIGMHFMNPPP--LMK  151 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~--~~~~~g~h~~~p~~--~~~  151 (297)
                      ++ +++||+||+|+|++...  +++.++.+.++++++|+..++..+.  ..+.+.+. +  ..+++....+.|+.  ...
T Consensus        78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~  155 (312)
T 3qsg_A           78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHR  155 (312)
T ss_dssp             HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGG
T ss_pred             HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCC
Confidence            65 78999999999998754  4668888888888887755544333  23443332 1  23444332222221  113


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhh
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~  222 (297)
                      +..++.+.   ++  +.++++|+.+|++++++++.+|     .++++++.    .+++|++.++++.+++++.++ ++..
T Consensus       156 l~i~vgg~---~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~~  229 (312)
T 3qsg_A          156 VPLVVDGD---GA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLDA  229 (312)
T ss_dssp             SEEEEEST---TH--HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHH
T ss_pred             EEEEecCC---hH--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHh
Confidence            45566653   22  8899999999999999987444     25566554    678999999998888885444 5554


Q ss_pred             cc
Q 022434          223 GT  224 (297)
Q Consensus       223 g~  224 (297)
                      +.
T Consensus       230 ~~  231 (312)
T 3qsg_A          230 SF  231 (312)
T ss_dssp             HS
T ss_pred             cC
Confidence            43

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.83  E-value=1.7e-19  Score=158.98  Aligned_cols=189  Identities=17%  Similarity=0.259  Sum_probs=133.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||..|+++|++|++||+++++++.+           .+.|.             ..++++++ ++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g~-------------~~~~~~~e~~~   86 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASL-----------AALGA-------------TIHEQARAAAR   86 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HTTTC-------------EEESSHHHHHT
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HHCCC-------------EeeCCHHHHHh
Confidence            4699999999999999999999999999999999987765           33332             56677776 78


Q ss_pred             CCcEEEEeccccHHHHHHHHH-HHHhhcCCCeEEEecCCC-CcH-HHHhhhcCCCCeEEEeecCCCCCC--------Cce
Q 022434           84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNTSS-ISI-TRLASATSRPCQVIGMHFMNPPPL--------MKL  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~ts~-~~~-~~l~~~~~~~~~~~g~h~~~p~~~--------~~~  152 (297)
                      +||+||+|+|++..++..+.. ++.+.++++++|+..++. +.. ..+.+.+...    +.||++.|-.        ..+
T Consensus        87 ~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l  162 (320)
T 4dll_A           87 DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL----GIAHLDTPVSGGTVGAEQGTL  162 (320)
T ss_dssp             TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECCEECHHHHHHHTCE
T ss_pred             cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc----CCEEEeCCCcCCHhHHhcCCe
Confidence            999999999987765554432 455566677666533333 222 3444443211    2344443311        112


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hhh---hHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g~---i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      . ++.+  ++++++++++++++.+ ++++++++. .+.   ++++++.    ..++|++.++++.+++++++..++..+.
T Consensus       163 ~-i~~g--g~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~  238 (320)
T 4dll_A          163 V-IMAG--GKPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGF  238 (320)
T ss_dssp             E-EEEE--SCHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTST
T ss_pred             e-EEeC--CCHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccc
Confidence            3 3333  5889999999999999 888888762 232   4555443    4689999999998899999999988665


Q ss_pred             C
Q 022434          225 N  225 (297)
Q Consensus       225 g  225 (297)
                      +
T Consensus       239 ~  239 (320)
T 4dll_A          239 A  239 (320)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.83  E-value=1.4e-18  Score=152.45  Aligned_cols=155  Identities=19%  Similarity=0.248  Sum_probs=123.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK--   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--   80 (297)
                      +++|+|||+|.||.+||..|.++|+  +|++||+++++++.+           .+.|...           ..+++++  
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a-----------~~~G~~~-----------~~~~~~~~~   90 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-----------VDLGIID-----------EGTTSIAKV   90 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCTTGG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH-----------HHCCCcc-----------hhcCCHHHH
Confidence            5799999999999999999999999  999999999887765           3455432           2455655  


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCC---------
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPL---------  149 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~---------  149 (297)
                      .+++||+||+|+|.+.  ..+++.++.+.++++++|++.+|...  .+.+.+.++  .++++.||+.++..         
T Consensus        91 ~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~~  166 (314)
T 3ggo_A           91 EDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLDN  166 (314)
T ss_dssp             GGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCTT
T ss_pred             hhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhhh
Confidence            4789999999999875  45788899998999999887666543  355666543  38999999987643         


Q ss_pred             ---CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          150 ---MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       150 ---~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                         ...+.++++..++++.+++++++++.+|++++++++
T Consensus       167 Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~  205 (314)
T 3ggo_A          167 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  205 (314)
T ss_dssp             TTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             hhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence               235777888889999999999999999999988754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.82  E-value=9.8e-20  Score=159.54  Aligned_cols=190  Identities=15%  Similarity=0.122  Sum_probs=133.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|.             ...+++++ ++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~   64 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAAL-----------VAAGA-------------HLCESVKAALS   64 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHH-----------HHHTC-------------EECSSHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHCCC-------------eecCCHHHHHh
Confidence            5789999999999999999999999999999999987765           33343             45566666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEE-ecCCCCcH-HHHhhhcC-CCCeEEEeecCCCC-CC--CceEEE
Q 022434           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPP-PL--MKLVEV  155 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~-~~--~~~vei  155 (297)
                      +||+||.|+|++..++..+ .  .+.... ++++|+ ++|+.+.. .++.+.+. ...+++....+.+| ..  ..+. +
T Consensus        65 ~aDvVi~~vp~~~~~~~v~-~~~~l~~~~-~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~-i  141 (306)
T 3l6d_A           65 ASPATIFVLLDNHATHEVL-GMPGVARAL-AHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESH-S  141 (306)
T ss_dssp             HSSEEEECCSSHHHHHHHH-TSTTHHHHT-TTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCE-E
T ss_pred             cCCEEEEEeCCHHHHHHHh-cccchhhcc-CCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceE-E
Confidence            8999999999877655443 4  465544 455444 44444433 34544432 23455554333322 11  1223 3


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeEEEe--cc--chhhhHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          156 IRGADTSDETFRATKALAERFGKTVVCS--QD--YAGFIVNRIL---MPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v--~d--~~g~i~nri~---~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      +.+  ++++++++++++|+.+|.+++++  ++  ..|.+++.++   ...++|++.++++.+++++++..++..+
T Consensus       142 ~~g--g~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~  214 (306)
T 3l6d_A          142 IHT--GDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLET  214 (306)
T ss_dssp             EEE--ECHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             EEc--CCHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            333  58999999999999998899999  75  3456666332   3578899999999889999998888765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.82  E-value=3.1e-20  Score=161.32  Aligned_cols=195  Identities=15%  Similarity=0.175  Sum_probs=134.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|.             ..++++++ +++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~~   57 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPL-----------VALGA-------------RQASSPAEVCAA   57 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHH-----------HHHTC-------------EECSCHHHHHHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------eecCCHHHHHHc
Confidence            589999999999999999999999999999999987765           23342             46667766 789


Q ss_pred             CcEEEEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCCCCCCC--ceEEEec
Q 022434           85 ADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPPLM--KLVEVIR  157 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~~~--~~vei~~  157 (297)
                      ||+||+|+|++..++..++  .++.+.++++++|+..++..+.  ..+.+.+. +..+++....+.+|...  +...++.
T Consensus        58 advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~  137 (287)
T 3pdu_A           58 CDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILA  137 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEE
Confidence            9999999998776655444  5566777777776643332222  24444332 22233332211111000  1123333


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccc-hhh---hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhccCC
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLGTNQ  226 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g~---i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~  226 (297)
                      +  ++++.+++++++++.+|++++++++. .+.   ++++.+    ...++|++.++++.+++++++..++..+.+.
T Consensus       138 g--g~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~  212 (287)
T 3pdu_A          138 A--GDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMA  212 (287)
T ss_dssp             E--ECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTC
T ss_pred             e--CCHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            3  57899999999999999999998762 222   444443    3468999999999889999999998876543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.80  E-value=2e-19  Score=155.32  Aligned_cols=213  Identities=11%  Similarity=0.095  Sum_probs=140.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||.+|+..|+++ ++| .+||+++++++.+.+          ..|.              .++++++ ++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~----------~~g~--------------~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAE----------VYGG--------------KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHH----------HTCC--------------CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHH----------HcCC--------------ccCCHHHHHh
Confidence            5799999999999999999988 999 599999987766521          1121              2345555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeec----CCCCCCCc-eEEEecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHF----MNPPPLMK-LVEVIRG  158 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~----~~p~~~~~-~vei~~~  158 (297)
                      ++|+||+|+|++.  ..+++.++.   +++++|++.+++.+.+.+...     ...+.|+    .++|.... ..++...
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~  127 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG  127 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence            8999999999876  456666554   567777765556666555433     3445664    33332111 1111111


Q ss_pred             CCCcHHHHHHHHHHHHHcCCeEEEeccc--hh-----hhHHHHHHHHHHHHHHHHHcCCCC-H---------HHHHHHHh
Q 022434          159 ADTSDETFRATKALAERFGKTVVCSQDY--AG-----FIVNRILMPMINEAFFTLYTGVAT-K---------EDIDAGMK  221 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~lg~~~i~v~d~--~g-----~i~nri~~~~~~Ea~~l~~~g~~~-~---------~~id~a~~  221 (297)
                      ..++++.++.++++++.+|++++++++.  +.     .+.++++..+++|+..+++..+.+ .         ..++.+++
T Consensus       128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~~  207 (276)
T 2i76_A          128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIKK  207 (276)
T ss_dssp             ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHh
Confidence            2245667999999999999988888642  21     245556677889998888854455 4         46777777


Q ss_pred             hc-cCCCchHHHHHHhhchHHHHHHHHHHHhhc
Q 022434          222 LG-TNQPMGPLQLADFIGLDVCLSIMKVLHTGL  253 (297)
Q Consensus       222 ~g-~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~  253 (297)
                      .| .+.+.||++..|..+++..+..++.+++.+
T Consensus       208 ~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          208 MRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             SCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             cChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence            77 566789999999999999999999885554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.79  E-value=6.2e-18  Score=150.63  Aligned_cols=192  Identities=13%  Similarity=0.129  Sum_probs=136.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..||..|+++||+|++||+++++++.+           .+.|.             ..++++++ ++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~e~~~   77 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQAL-----------EREGI-------------AGARSIEEFCA   77 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HTTTC-------------BCCSSHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-----------HHCCC-------------EEeCCHHHHHh
Confidence            4799999999999999999999999999999999987765           33343             34566665 66


Q ss_pred             CC---cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCCCCCC-CceEEEe
Q 022434           84 SA---DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPPL-MKLVEVI  156 (297)
Q Consensus        84 ~a---D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vei~  156 (297)
                      ++   |+||.|+|.+ . ...++.++.+.++++++|++.+++.+.  .++.+.+. +..+++....+.++.. .....++
T Consensus        78 ~a~~~DvVi~~vp~~-~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im  155 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA-V-VDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLM  155 (358)
T ss_dssp             HSCSSCEEEECSCGG-G-HHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEE
T ss_pred             cCCCCCEEEEeCCHH-H-HHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeee
Confidence            67   9999999998 4 456778888888888888766555443  34444442 2334544432222210 0011355


Q ss_pred             cCCCCcHHHHHHHHHHHHHcC--------------------CeEEEeccc-hhh---hHHHHH----HHHHHHHHHHHHc
Q 022434          157 RGADTSDETFRATKALAERFG--------------------KTVVCSQDY-AGF---IVNRIL----MPMINEAFFTLYT  208 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg--------------------~~~i~v~d~-~g~---i~nri~----~~~~~Ea~~l~~~  208 (297)
                      .+  ++++++++++++|+.+|                    +.++++++. .|.   ++++.+    ...++|++.++++
T Consensus       156 ~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~  233 (358)
T 4e21_A          156 IG--GEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHH  233 (358)
T ss_dssp             EE--SCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ec--CCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55  78999999999999999                    567888752 343   444433    2467899999998


Q ss_pred             C------------------------CCCHHHHHHHHhhcc
Q 022434          209 G------------------------VATKEDIDAGMKLGT  224 (297)
Q Consensus       209 g------------------------~~~~~~id~a~~~g~  224 (297)
                      .                        +.+.++|-.+++.|.
T Consensus       234 a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~  273 (358)
T 4e21_A          234 ANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGS  273 (358)
T ss_dssp             TTCC--------------CGGGCCCCCCHHHHHHHHTTTS
T ss_pred             cccccccccccccccccccchhcccCCCHHHHHHHHhCcc
Confidence            6                        678888888887654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.78  E-value=9.6e-17  Score=141.07  Aligned_cols=192  Identities=13%  Similarity=0.084  Sum_probs=126.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +++|+|||+|.||.+||..|+++| ++|++||++++..++..+..    +.+.+.|.              ..+++++ +
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~~~~~~g~--------------~~~s~~e~~   85 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALR----ARAAELGV--------------EPLDDVAGI   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHH----HHHHHTTC--------------EEESSGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHH----HHHHHCCC--------------CCCCHHHHH
Confidence            478999999999999999999999 99999999983211111111    11123331              2314444 8


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCCCCC--CCceEEEec
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPP--LMKLVEVIR  157 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~--~~~~vei~~  157 (297)
                      ++||+||.|+|++...+  .+.++.+.++++++|++.++..+.  ..+.+.+. ...+++....+.|+.  ...+..++.
T Consensus        86 ~~aDvVi~avp~~~~~~--~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vg  163 (317)
T 4ezb_A           86 ACADVVLSLVVGAATKA--VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA  163 (317)
T ss_dssp             GGCSEEEECCCGGGHHH--HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEE
T ss_pred             hcCCEEEEecCCHHHHH--HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEe
Confidence            89999999999887643  447788888888877744433222  34554442 233455443333322  223454555


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccchh-----hhHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRIL----MPMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-----~i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +.   ++  +.++++|+.+|++++++++.+|     .++++++    ..+++|++.++++.+++++.++.+..
T Consensus       164 g~---~~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~  231 (317)
T 4ezb_A          164 GR---RA--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQE  231 (317)
T ss_dssp             ST---TH--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CC---hH--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            53   23  8899999999999999987444     2555543    46789999999998889866665544

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.78  E-value=2.4e-18  Score=158.03  Aligned_cols=207  Identities=14%  Similarity=0.154  Sum_probs=139.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-CC-cEEEEeCCHH----HHHHHHHH------HHHHHHHHHHcCCCChhhhcccCC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTDPD----ALVRATKS------ISSSIQKFVSKGQLSQAVGTDAPR   71 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~----~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~   71 (297)
                      ++++|+|||+|.||.++|..|+++ || +|++||++++    +++.+.+.      .+..++.+++++        ....
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~--------~~~g   88 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKV--------VKAG   88 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHH--------HHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhh--------cccC
Confidence            468999999999999999999999 99 9999999999    87765321      011111111100        0135


Q ss_pred             CcEEecCccccCCCcEEEEeccccH----------HHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhh-----hcC
Q 022434           72 RLRCTSNLKDLHSADIIVEAIVESE----------DVKKKLFSELDKITKASAILASNTSSISI---TRLAS-----ATS  133 (297)
Q Consensus        72 ~i~~~~~~~~~~~aD~Vi~~v~e~~----------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~-----~~~  133 (297)
                      ++.++++.+.+++||+||+|||++.          .......+.+.+.++++++|+ +.||+++   .++..     ...
T Consensus        89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHHHC
T ss_pred             CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHhcC
Confidence            6788888767999999999999863          223455667888888888765 4455554   23332     111


Q ss_pred             C--CCeEEEeec-CCCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHc-CCeEEEeccchh----hhHHHHH-
Q 022434          134 R--PCQVIGMHF-MNPPPLMKL---------VEVIRGADTSDETFRATKALAERF-GKTVVCSQDYAG----FIVNRIL-  195 (297)
Q Consensus       134 ~--~~~~~g~h~-~~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~l-g~~~i~v~d~~g----~i~nri~-  195 (297)
                      .  ...+   ++ ++|....+.         ..|+.|  ++++.+++++++|+.+ +..++++++...    .++++++ 
T Consensus       168 ~~~~~d~---~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~  242 (478)
T 3g79_A          168 LKAGEDF---ALAHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR  242 (478)
T ss_dssp             CCBTTTB---EEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCcCCce---eEEeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH
Confidence            1  0111   11 234333221         135655  6888899999999999 788888766321    3556554 


Q ss_pred             ---HHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          196 ---MPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       196 ---~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                         .+++||++.++++-++|++++-.++....
T Consensus       243 a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~  274 (478)
T 3g79_A          243 DLQIAAINQLALYCEAMGINVYDVRTGVDSLK  274 (478)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence               36899999999998899999888876443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.77  E-value=1e-17  Score=145.34  Aligned_cols=154  Identities=14%  Similarity=0.133  Sum_probs=116.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +++|+|||+ |.||.++|..|+++|++|++||+++++++.+           .+.|.             ..++..+.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~-----------~~~g~-------------~~~~~~~~~~   66 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRL-----------QGMGI-------------PLTDGDGWID   66 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHH-----------HHTTC-------------CCCCSSGGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HhcCC-------------CcCCHHHHhc
Confidence            469999999 9999999999999999999999999877665           22231             1222233478


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--------CCce---
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--------LMKL---  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--------~~~~---  152 (297)
                      +||+||+|+|++.  ..+++.++.+.++++++|++.+++.+.+.+.+ .....++++.||+.|+.        ....   
T Consensus        67 ~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~  143 (286)
T 3c24_A           67 EADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG  143 (286)
T ss_dssp             TCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred             CCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence            9999999999765  56788888888888899887666666666654 33346899899988765        2222   


Q ss_pred             -----EEEecCCCCcHHHHHHHHHHHHHcCC---eEEEecc
Q 022434          153 -----VEVIRGADTSDETFRATKALAERFGK---TVVCSQD  185 (297)
Q Consensus       153 -----vei~~~~~~~~~~~~~~~~ll~~lg~---~~i~v~d  185 (297)
                           ..++.+..++++.++.++++++.+|.   +++++++
T Consensus       144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~  184 (286)
T 3c24_A          144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTT  184 (286)
T ss_dssp             SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCH
T ss_pred             ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeCh
Confidence                 23333344788999999999999999   7888754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.77  E-value=1.4e-17  Score=146.89  Aligned_cols=153  Identities=18%  Similarity=0.216  Sum_probs=117.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      +++|+|||+|.||.+||..|+++|    ++|++|||+++  +++.+           .+.|.             ..+++
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l-----------~~~G~-------------~~~~~   77 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSAL-----------RKMGV-------------KLTPH   77 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHH-----------HHHTC-------------EEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHH-----------HHcCC-------------EEeCC
Confidence            468999999999999999999999    89999999986  55554           22342             45555


Q ss_pred             ccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCC---CCeEEEeecCCCCCCCceEE
Q 022434           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR---PCQVIGMHFMNPPPLMKLVE  154 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~---~~~~~g~h~~~p~~~~~~ve  154 (297)
                      ..+ +++||+||.|+|..  ...+++.++.+.++++++|++.+++++...+.+.+..   ..++++.++..|........
T Consensus        78 ~~e~~~~aDvVilav~~~--~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~  155 (322)
T 2izz_A           78 NKETVQHSDVLFLAVKPH--IIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGAT  155 (322)
T ss_dssp             HHHHHHHCSEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEE
T ss_pred             hHHHhccCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeE
Confidence            554 78899999999943  3567788888888888888888888888766665532   35788889887775554444


Q ss_pred             Ee-cCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          155 VI-RGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       155 i~-~~~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      ++ .+...+++.++.++++|+.+|..+++.
T Consensus       156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~  185 (322)
T 2izz_A          156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVE  185 (322)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHTTEEEEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence            43 566567899999999999999876544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.77  E-value=7.3e-18  Score=148.28  Aligned_cols=194  Identities=17%  Similarity=0.203  Sum_probs=135.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||..+|..|++.|++|++||+++++++.+           .+.|.             ...++.++ +
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g~-------------~~~~~~~~~~   84 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLF-----------IQEGA-------------RLGRTPAEVV   84 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHH-----------HHTTC-------------EECSCHHHHH
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-----------HHcCC-------------EEcCCHHHHH
Confidence            35789999999999999999999999999999999877654           22332             34455554 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHH--HHhhcCCCeEEEecCCCCc--HHHHhhhcC-CCCeEEEeecCCCCC---CCceEE
Q 022434           83 HSADIIVEAIVESEDVKKKLFSE--LDKITKASAILASNTSSIS--ITRLASATS-RPCQVIGMHFMNPPP---LMKLVE  154 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~~~~g~h~~~p~~---~~~~ve  154 (297)
                      +++|+||+|+|++..++..+...  +.+.++++++|++.++..+  ..++.+.+. .+.++++.++++.+.   ...+..
T Consensus        85 ~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~  164 (316)
T 2uyy_A           85 STCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI  164 (316)
T ss_dssp             HHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             hcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEE
Confidence            88999999999777655433321  2255666776664433322  345665552 355777776554331   122444


Q ss_pred             EecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh----hhHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          155 VIRGADTSDETFRATKALAERFGKTVVCSQDY-AG----FIVNRI---LMPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       155 i~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g----~i~nri---~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      ++.+   +++.++.+.++|+.+|..++++++. .+    ++.|.+   ...+++|++.++++.++++++++.++..+.
T Consensus       165 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~  239 (316)
T 2uyy_A          165 LAAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQ  239 (316)
T ss_dssp             EEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             EeCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence            4444   6789999999999999999888652 12    345554   356789999999988889999988887654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.77  E-value=8.6e-18  Score=155.30  Aligned_cols=205  Identities=16%  Similarity=0.215  Sum_probs=141.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .+||+|||+|.||.++|..|+++||+|++||+++++++.+.+...    ..++.+++        ......++.++++++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~--------~~~~~~~l~~ttd~~   79 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIA--------RNRSAGRLRFSTDIE   79 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHH--------HHHHTTCEEEECCHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHH--------HhcccCCEEEECCHH
Confidence            479999999999999999999999999999999998887632100    00000000        000134578888886


Q ss_pred             c-cCCCcEEEEecccc--------HHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcC----CC---CeEEEe
Q 022434           81 D-LHSADIIVEAIVES--------EDVKKKLFSELDKITKASAILASNTSSISI---TRLASATS----RP---CQVIGM  141 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~--------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~----~~---~~~~g~  141 (297)
                      + +++||+||.|||++        ......+++++.+.++++++|+ +.|++++   +.+.+.+.    .+   ..+  .
T Consensus        80 ~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV-~~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~  156 (478)
T 2y0c_A           80 AAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIV-DKSTVPVGTAERVRAAVAEELAKRGGDQMF--S  156 (478)
T ss_dssp             HHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHHHHTTCCCCE--E
T ss_pred             HHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEE-EeCCcCCCchHHHHHHHHHHhcCCCCCccE--E
Confidence            5 88999999999984        3667788899999999988876 4456544   22322221    11   222  2


Q ss_pred             ecCCCCCCCceE---------EEecCCCCcH----HHHHHHHHHHHHcCC--eEEEeccc-----hhhhHHHHH---HHH
Q 022434          142 HFMNPPPLMKLV---------EVIRGADTSD----ETFRATKALAERFGK--TVVCSQDY-----AGFIVNRIL---MPM  198 (297)
Q Consensus       142 h~~~p~~~~~~v---------ei~~~~~~~~----~~~~~~~~ll~~lg~--~~i~v~d~-----~g~i~nri~---~~~  198 (297)
                      ..++|....+..         .++.|. .++    +..+.+.++++.+++  .++++.+.     .+++.|.+.   ..+
T Consensus       157 v~~~Pe~~~eG~~~~~~~~p~~iviG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~  235 (478)
T 2y0c_A          157 VVSNPEFLKEGAAVDDFTRPDRIVIGC-DDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISF  235 (478)
T ss_dssp             EEECCCCCCTTCHHHHHHSCSCEEEEC-CSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEChhhhcccceeeccCCCCEEEEEE-CCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345665544432         355553 234    788999999998765  56766653     345666655   568


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHh
Q 022434          199 INEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +||+..+++..+++++++..++.
T Consensus       236 ~nE~~~la~~~Gid~~~v~~~i~  258 (478)
T 2y0c_A          236 MNELANLADRFGADIEAVRRGIG  258 (478)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHh
Confidence            99999999998899999888775

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.76  E-value=3e-18  Score=142.50  Aligned_cols=162  Identities=14%  Similarity=0.141  Sum_probs=125.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |....++|+|||+|.||.+||..|.++||+|++||+.                                          +
T Consensus         2 ~~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~   39 (232)
T 3dfu_A            2 MQAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------E   39 (232)
T ss_dssp             -CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------G
T ss_pred             CCCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------H
Confidence            5556689999999999999999999999999999973                                          1


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~  160 (297)
                      ++++||  |.|+|++.  ...++.++.+.+++++++++.+++.+.+.+......+.++++.||+...     ..++..  
T Consensus        40 ~~~~aD--ilavP~~a--i~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a--  108 (232)
T 3dfu_A           40 DIRDFE--LVVIDAHG--VEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASA--  108 (232)
T ss_dssp             GGGGCS--EEEECSSC--HHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEE--
T ss_pred             HhccCC--EEEEcHHH--HHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeC--
Confidence            134688  88999873  4577788888888999888766555554444443456789999987432     223332  


Q ss_pred             CcHHHHHHHHHHHHHcCCeEEEecc--chhh----hHHHHHHHHHHHHHHHH---HcCCCCHHH
Q 022434          161 TSDETFRATKALAERFGKTVVCSQD--YAGF----IVNRILMPMINEAFFTL---YTGVATKED  215 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~v~d--~~g~----i~nri~~~~~~Ea~~l~---~~g~~~~~~  215 (297)
                      .+++.++.++++++.+|.+++.+.+  .+.+    ...+.+.+++++|.+++   ++|.++++|
T Consensus       109 ~d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d  172 (232)
T 3dfu_A          109 LDELGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSD  172 (232)
T ss_dssp             SSHHHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence            3788999999999999999998854  4554    56778889999999999   889988888

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.76  E-value=8.9e-18  Score=146.69  Aligned_cols=195  Identities=18%  Similarity=0.232  Sum_probs=134.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |. +.++|+|||+|.||..+|..|++.|++|++||+++++++.+           .+.|.             ...++++
T Consensus         1 M~-~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g~-------------~~~~~~~   55 (301)
T 3cky_A            1 ME-KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAV-----------VAQGA-------------QACENNQ   55 (301)
T ss_dssp             ----CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HTTTC-------------EECSSHH
T ss_pred             CC-CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHCCC-------------eecCCHH
Confidence            54 35799999999999999999999999999999999877655           22232             3455665


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCc--HHHHhhhcCC-CCeEEEeecCCCCC---CCc
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMNPPP---LMK  151 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~p~~---~~~  151 (297)
                      + ++++|+||.|+|.+..++..+.  .++.+.++++++|++.+++.+  ...+.+.+.. ..+++.. +..+..   ..+
T Consensus        56 ~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g  134 (301)
T 3cky_A           56 KVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAG  134 (301)
T ss_dssp             HHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHT
T ss_pred             HHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcC
Confidence            5 7789999999998776555444  267777888888887776663  3566655432 2334332 111100   001


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc-chhh----hHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF----IVNRI---LMPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d-~~g~----i~nri---~~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      .+.++.+  ++++.++.++++|+.+|..++++++ ..+.    +.|.+   +...++|++.++++.+++++++...+..+
T Consensus       135 ~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~  212 (301)
T 3cky_A          135 TLTIMVG--ASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKS  212 (301)
T ss_dssp             CEEEEEE--SCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred             CeEEEEC--CCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            1233333  3789999999999999999887754 2332    34443   34578999999988778999988877654

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.76  E-value=2.9e-17  Score=148.79  Aligned_cols=198  Identities=15%  Similarity=0.194  Sum_probs=133.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .+++|+|||+|.||.++|..|++ |++|++||+++++++.+.+..    +..++.+++.+          ..++.+++|+
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~----------~~~l~~ttd~  103 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK----------PLNFRATTDK  103 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc----------cCCeEEEcCH
Confidence            46799999999999999999998 999999999999988764321    11122222211          2457888897


Q ss_pred             cc-cCCCcEEEEeccccH---------HHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCC
Q 022434           80 KD-LHSADIIVEAIVESE---------DVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNP  146 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~---------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p  146 (297)
                      ++ +++||+||+|+|++.         .....+.+.+.+ ++++++|+ ..|++++   +++.+.+..  .  ++.| +|
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~--~v~~-sP  176 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--D--NVIF-SP  176 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--C--CEEE-CC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--c--cEee-cC
Confidence            65 899999999999873         234556677777 67777665 3445544   456665542  1  2222 55


Q ss_pred             CCCCce------E---EEecCCCCcHHHHHHHHHHHHH--cCC-eEEEeccc-hh---hhHHHHH----HHHHHHHHHHH
Q 022434          147 PPLMKL------V---EVIRGADTSDETFRATKALAER--FGK-TVVCSQDY-AG---FIVNRIL----MPMINEAFFTL  206 (297)
Q Consensus       147 ~~~~~~------v---ei~~~~~~~~~~~~~~~~ll~~--lg~-~~i~v~d~-~g---~i~nri~----~~~~~Ea~~l~  206 (297)
                      ....+.      .   .++.|  ++++..+++.++|..  ++. .++++.+. .+   .++++.+    .+++||+..++
T Consensus       177 e~~~~G~A~~~~l~p~rIvvG--~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la  254 (432)
T 3pid_A          177 EFLREGRALYDNLHPSRIVIG--ERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA  254 (432)
T ss_dssp             CCCCTTSHHHHHHSCSCEEES--SCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhhhcccCCceEEec--CCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543331      1   35555  456778888999986  443 34444432 12   2455544    36899999999


Q ss_pred             HcCCCCHHHHHHHHh
Q 022434          207 YTGVATKEDIDAGMK  221 (297)
Q Consensus       207 ~~g~~~~~~id~a~~  221 (297)
                      +.-++|++++-.++.
T Consensus       255 e~~GiD~~~v~~~~~  269 (432)
T 3pid_A          255 ESQGLNSKQIIEGVC  269 (432)
T ss_dssp             HHTTCCHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHc
Confidence            998899999888875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.75  E-value=8.5e-18  Score=153.53  Aligned_cols=205  Identities=14%  Similarity=0.158  Sum_probs=135.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      -+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+..    +..++.+++.        .....++.+++|+++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~--------~~~~g~l~~ttd~~e   80 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVAS--------NVKAGRLSFTTDLAE   80 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHH--------HHHTTCEEEESCHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHh--------hcccCCEEEECCHHH
Confidence            5899999999999999999999999999999999888763210    0000000000        001356788999865


Q ss_pred             -cCCCcEEEEeccccHH---------HHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhc----CCCCeEEEeecC
Q 022434           82 -LHSADIIVEAIVESED---------VKKKLFSELDKITKASAILASNTSSISI---TRLASAT----SRPCQVIGMHFM  144 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~----~~~~~~~g~h~~  144 (297)
                       +++||+||.|||++..         ...++++.+.+.++++++|+. .|++++   .++.+.+    ....-.+.   +
T Consensus        81 a~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~e~~~~~d~~v~---~  156 (446)
T 4a7p_A           81 GVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIAEVAPNSGAKVV---S  156 (446)
T ss_dssp             HHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHHHHSTTSCCEEE---E
T ss_pred             HHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHHHhCCCCCceEE---e
Confidence             8999999999987652         356677888888888887764 345554   2333322    11011111   2


Q ss_pred             CCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHcCCe---EEEeccchh----hhHHHHH----HHHHHHHHH
Q 022434          145 NPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKT---VVCSQDYAG----FIVNRIL----MPMINEAFF  204 (297)
Q Consensus       145 ~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~lg~~---~i~v~d~~g----~i~nri~----~~~~~Ea~~  204 (297)
                      +|....+.         ..++.|. .++++.+.++++|+.+++.   ++++.+..+    .++++.+    .+++||+..
T Consensus       157 ~Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~  235 (446)
T 4a7p_A          157 NPEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD  235 (446)
T ss_dssp             CCCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322221         1344441 3589999999999998875   566665422    3555544    367899999


Q ss_pred             HHHcCCCCHHHHHHHHhhc
Q 022434          205 TLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       205 l~~~g~~~~~~id~a~~~g  223 (297)
                      ++++-++|++++-.++..+
T Consensus       236 l~~~~GiD~~~v~~~~~~~  254 (446)
T 4a7p_A          236 LCEQVGADVQEVSRGIGMD  254 (446)
T ss_dssp             HHHHTTCCHHHHHHHHHTS
T ss_pred             HHHHcCCCHHHHHHHHhcC
Confidence            9999889999988887653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.75  E-value=4.3e-18  Score=156.97  Aligned_cols=110  Identities=25%  Similarity=0.245  Sum_probs=99.9

Q ss_pred             CcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHhhccCCCc---hHHHHHHh
Q 022434          161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVAT-KEDIDAGMKLGTNQPM---GPLQLADF  236 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~-~~~id~a~~~g~g~p~---Gp~~~~D~  236 (297)
                      +++++.+.+..+.+.+|+.+..+  .+|++.||++.+++|||++++++|+++ ++|||.+|++|+|||+   |||+++|.
T Consensus       332 ~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D~  409 (463)
T 1zcj_A          332 PDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAAS  409 (463)
T ss_dssp             ECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHHH
Confidence            57888888888877788655433  379999999999999999999999994 9999999999999998   99999999


Q ss_pred             hchHHHHHHHHHHHhhcCC-CCCCCcHHHHHHHHcCC
Q 022434          237 IGLDVCLSIMKVLHTGLGD-SKYAPCPLLVQYVDAGR  272 (297)
Q Consensus       237 ~Gl~~~~~~~~~~~~~~~~-~~~~p~~~l~~~~~~g~  272 (297)
                      +|++.++.+++.+++.+++ ++|+|+++|++|+++|+
T Consensus       410 ~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~  446 (463)
T 1zcj_A          410 VGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS  446 (463)
T ss_dssp             HCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred             hCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCC
Confidence            9999999999999999998 68999999999999874

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.74  E-value=3.6e-17  Score=142.70  Aligned_cols=193  Identities=18%  Similarity=0.301  Sum_probs=134.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|+++|++|++||+++++.+.+           .+.|.             ...+++++ +++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV-----------IAAGA-------------ETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-----------HHCCC-------------eecCCHHHHHhC
Confidence            589999999999999999999999999999999877665           22332             35566655 788


Q ss_pred             CcEEEEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCcH--HHHhhhcCC-CCeEEEeecCC-CCC-CCceEEEec
Q 022434           85 ADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMN-PPP-LMKLVEVIR  157 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~-p~~-~~~~vei~~  157 (297)
                      +|+||.|+|++..++..++  .++.+.++++++|++.++..+.  ..+.+.+.. ...++....+. ++. ..+.+.++.
T Consensus        62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence            9999999997776554443  4677778888888765555442  456665532 22333221111 110 011234444


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccc-hhh---hHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g~---i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +  ++++.++.++++|+.+|.+++++++. .+.   ++++.+.    ..++|++.++++.++++++++.++..+.
T Consensus       142 ~--~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  214 (299)
T 1vpd_A          142 G--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGL  214 (299)
T ss_dssp             E--SCHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             C--CCHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Confidence            4  47899999999999999998888643 343   3344443    5789999999988889999988877554

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.74  E-value=5.6e-18  Score=147.62  Aligned_cols=188  Identities=23%  Similarity=0.265  Sum_probs=131.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|+++|++|++||+++++++.+           .+.|             +..+++.++ +++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~   56 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEF-----------QDAG-------------EQVVSSPADVAEK   56 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHH-----------HTTT-------------CEECSSHHHHHHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcC-------------CeecCCHHHHHhc
Confidence            379999999999999999999999999999999877665           2223             245566665 788


Q ss_pred             CcEEEEeccccHHHHHHHHHHH---HhhcCCCeEEEecCCCCcHHH---HhhhcCCCCeEEEeecCCCCCCC-------c
Q 022434           85 ADIIVEAIVESEDVKKKLFSEL---DKITKASAILASNTSSISITR---LASATSRPCQVIGMHFMNPPPLM-------K  151 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l---~~~~~~~~ii~s~ts~~~~~~---l~~~~~~~~~~~g~h~~~p~~~~-------~  151 (297)
                      +|+||.|+|.+..++. ++.++   .+.++++++|++ ++++++..   +.+.+...    +.+|.+.|-..       +
T Consensus        57 ~Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~  130 (296)
T 2gf2_A           57 ADRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSG  130 (296)
T ss_dssp             CSEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHT
T ss_pred             CCEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcC
Confidence            9999999987766544 44433   335577888887 77777643   32333211    22333333111       1


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      ...++.+  ++++.++.++++|+.+|..++++++. .+   .++++.+.    .+++|++.++++.++++++++.++..+
T Consensus       131 ~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~  208 (296)
T 2gf2_A          131 NLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMS  208 (296)
T ss_dssp             CEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred             cEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            2344444  57889999999999999998887652 22   24555543    578999999998788999999888765


Q ss_pred             cC
Q 022434          224 TN  225 (297)
Q Consensus       224 ~g  225 (297)
                      .|
T Consensus       209 ~~  210 (296)
T 2gf2_A          209 SG  210 (296)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.74  E-value=3.3e-16  Score=142.14  Aligned_cols=199  Identities=14%  Similarity=0.181  Sum_probs=133.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      .+..|||+|.||.++|.+|+++||+|++||+++++++.+.+.        +...+.+.+.            ..++.+++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~------------~g~l~~tt   79 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLS------------SGKLKVST   79 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEEES
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcc------------cCceEEeC
Confidence            589999999999999999999999999999999998876431        1111111111            24567777


Q ss_pred             CccccCCCcEEEEeccccHH----------HHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhc-C-CCCeE-EEe
Q 022434           78 NLKDLHSADIIVEAIVESED----------VKKKLFSELDKITKASAILASNTSSISI---TRLASAT-S-RPCQV-IGM  141 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~~----------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~-~-~~~~~-~g~  141 (297)
                      ++   ++||+||.|||++..          ......+.+.+.++++++|+ ..||+++   .++.+.+ . .+.+. ..+
T Consensus        80 d~---~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~~~~d~  155 (431)
T 3ojo_A           80 TP---EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIENLGFTIGEDI  155 (431)
T ss_dssp             SC---CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCCBTTTE
T ss_pred             ch---hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHHcCCCcCCCe
Confidence            64   489999999998762          23345567888888888766 3445554   2333321 1 11110 001


Q ss_pred             ec-CCCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHH----HHHHHHHH
Q 022434          142 HF-MNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRIL----MPMINEAF  203 (297)
Q Consensus       142 h~-~~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~----~~~~~Ea~  203 (297)
                      ++ ++|.+..+.         ..++.|  .+++..+.++++++.+++.++++++. .+   .++|+++    .+++||++
T Consensus       156 ~v~~~Pe~~~~G~A~~~~~~p~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~  233 (431)
T 3ojo_A          156 YLVHCPERVLPGKILEELVHNNRIIGG--VTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELT  233 (431)
T ss_dssp             EEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcCCCcchhhcccCCCEEEEe--CCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 244333221         145666  47899999999999999877777553 12   3566655    36899999


Q ss_pred             HHHHcCCCCHHHHHHHHhh
Q 022434          204 FTLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       204 ~l~~~g~~~~~~id~a~~~  222 (297)
                      .++++-++|++++-.++..
T Consensus       234 ~l~e~~GiD~~~v~~~~~~  252 (431)
T 3ojo_A          234 KICNNLNINVLDVIEMANK  252 (431)
T ss_dssp             HHHHHTTCCHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHcc
Confidence            9999988999998887753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.73  E-value=1.1e-16  Score=146.84  Aligned_cols=206  Identities=17%  Similarity=0.156  Sum_probs=136.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|.||.++|..|+++||+|++||+++++++.+.+...    ..++.+++.        .....++.+++++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~--------~~~~~~l~~t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR--------NVKAGRLRFGTEIEQ   74 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHH--------HHHTTSEEEESCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHh--------hcccCcEEEECCHHH
Confidence            69999999999999999999999999999999998887633100    000000000        001345678889886


Q ss_pred             -cCCCcEEEEeccccHH--------HHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCC-----C--CeEEEee
Q 022434           82 -LHSADIIVEAIVESED--------VKKKLFSELDKITKASAILASNTSSISI---TRLASATSR-----P--CQVIGMH  142 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~-----~--~~~~g~h  142 (297)
                       +++||+||.|+|++..        ....+++++.+.++++++|+..+ ++++   .++.+.+..     .  ..+.-  
T Consensus        75 a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v--  151 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDI--  151 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEE--
T ss_pred             HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeE--
Confidence             8999999999998741        46677888988888888776443 4443   233332210     0  11111  


Q ss_pred             cCCCCCCCceE---------EEecCCCCcHHHHHHHHHHHHHcCC--eEEEeccchh----hhHHHHH----HHHHHHHH
Q 022434          143 FMNPPPLMKLV---------EVIRGADTSDETFRATKALAERFGK--TVVCSQDYAG----FIVNRIL----MPMINEAF  203 (297)
Q Consensus       143 ~~~p~~~~~~v---------ei~~~~~~~~~~~~~~~~ll~~lg~--~~i~v~d~~g----~i~nri~----~~~~~Ea~  203 (297)
                      .++|....+..         .++.|. .++++.+.++++++.+++  .++++.+..+    .++++.+    ..++||+.
T Consensus       152 ~~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~  230 (450)
T 3gg2_A          152 ASNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVA  230 (450)
T ss_dssp             EECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12343332211         244331 368999999999999886  3566655432    2444443    46789999


Q ss_pred             HHHHcCCCCHHHHHHHHhhc
Q 022434          204 FTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       204 ~l~~~g~~~~~~id~a~~~g  223 (297)
                      .++++-+++++++-.++..+
T Consensus       231 ~l~~~~Gid~~~v~~~~~~~  250 (450)
T 3gg2_A          231 NLCERVGADVSMVRLGIGSD  250 (450)
T ss_dssp             HHHHHHTCCHHHHHHHHHTS
T ss_pred             HHHHHhCCCHHHHHHHHcCC
Confidence            99999889999998887644

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.73  E-value=1.4e-17  Score=153.14  Aligned_cols=195  Identities=14%  Similarity=0.159  Sum_probs=133.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.+..        ..++..+.++++ +
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~~--------g~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDF-----------LANEAK--------GTKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHH-----------HHTTTT--------TSSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HhcccC--------CCceeccCCHHHHH
Confidence            35789999999999999999999999999999999988776           333221        113445666665 3


Q ss_pred             C---CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCCCCC-CCceEEE
Q 022434           83 H---SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPP-LMKLVEV  155 (297)
Q Consensus        83 ~---~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~-~~~~vei  155 (297)
                      +   ++|+||.+||.+..+ ..++.++.+.++++.+|+..+++.+.  .++.+.+. ...++++......+. ......+
T Consensus        64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~i  142 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSL  142 (484)
T ss_dssp             HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEE
T ss_pred             hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCee
Confidence            3   699999999987654 45668888888888887765555543  34444332 223454432221110 0001135


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeE-------EEeccc-hh---hhHHHHH----HHHHHHHHHHHHc-CCCCHHHHHHH
Q 022434          156 IRGADTSDETFRATKALAERFGKTV-------VCSQDY-AG---FIVNRIL----MPMINEAFFTLYT-GVATKEDIDAG  219 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~-------i~v~d~-~g---~i~nri~----~~~~~Ea~~l~~~-g~~~~~~id~a  219 (297)
                      +.+  +++++++.++++|+.++.++       +++++. .|   .++++.+    ...++|++.++++ .+++++++..+
T Consensus       143 m~G--G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v  220 (484)
T 4gwg_A          143 MPG--GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQA  220 (484)
T ss_dssp             EEE--ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             ecC--CCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            555  67899999999999999887       666552 22   2445443    3578999999998 77899888776


Q ss_pred             H
Q 022434          220 M  220 (297)
Q Consensus       220 ~  220 (297)
                      +
T Consensus       221 ~  221 (484)
T 4gwg_A          221 F  221 (484)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.73  E-value=3.7e-16  Score=133.71  Aligned_cols=149  Identities=17%  Similarity=0.257  Sum_probs=112.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..+|..|+++| ++|++||+++++++.+.+.          .|.             ...++.++ + 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g~-------------~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LGV-------------ETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TCC-------------EEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cCC-------------EEeCCHHHHh-
Confidence            47999999999999999999999 9999999999887765211          132             45556655 7 


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc-eEEEecCCCCc
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIRGADTS  162 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vei~~~~~~~  162 (297)
                      ++|+||+|+| +.. ...++.++.+  + +++|++.+++++++.+.+.+..+.+++...+..|..... ...++.+..++
T Consensus        57 ~~D~vi~~v~-~~~-~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~  131 (263)
T 1yqg_A           57 SDDVLILAVK-PQD-MEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS  131 (263)
T ss_dssp             TTSEEEECSC-HHH-HHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred             cCCEEEEEeC-chh-HHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence            9999999999 333 4556665544  4 788888888998888888776555777774433443332 45677776678


Q ss_pred             HHHHHHHHHHHHHcCCeEEEec
Q 022434          163 DETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      ++.++.++++++.+|..+ +++
T Consensus       132 ~~~~~~~~~l~~~~g~~~-~~~  152 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTV-WLD  152 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEE-ECS
T ss_pred             HHHHHHHHHHHHhCCCEE-EeC
Confidence            999999999999999876 665

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.73  E-value=4.1e-17  Score=144.14  Aligned_cols=154  Identities=15%  Similarity=0.145  Sum_probs=114.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||.+||..|.++|++|++||++++.++.+           .+.|.             ..++++++ +
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~G~-------------~~~~~~~e~~   62 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSA-----------VDEGF-------------DVSADLEATL   62 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-----------HHTTC-------------CEESCHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------eeeCCHHHHH
Confidence            36799999999999999999999999999999999887765           34443             23455544 4


Q ss_pred             C----CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCCC------
Q 022434           83 H----SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLM------  150 (297)
Q Consensus        83 ~----~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~------  150 (297)
                      +    +||+||.|+|.+  ....++.++.+. +++++|+..+|.-.  .+.+.+.+. ..++++.||+..+...      
T Consensus        63 ~~a~~~aDlVilavP~~--~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~  138 (341)
T 3ktd_A           63 QRAAAEDALIVLAVPMT--AIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASM  138 (341)
T ss_dssp             HHHHHTTCEEEECSCHH--HHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCC
T ss_pred             HhcccCCCEEEEeCCHH--HHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhh
Confidence            3    579999999953  356788888876 67787764444322  245555443 4689999998866422      


Q ss_pred             ------ceEEEecCCCCcHH--------HHHHHHHHHHHcCCeEEEecc
Q 022434          151 ------KLVEVIRGADTSDE--------TFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       151 ------~~vei~~~~~~~~~--------~~~~~~~ll~~lg~~~i~v~d  185 (297)
                            ..+-++++..++++        .+++++++++.+|.+++++..
T Consensus       139 ~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~  187 (341)
T 3ktd_A          139 DGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRV  187 (341)
T ss_dssp             SSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             hHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCH
Confidence                  13456666667777        899999999999999988853

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.72  E-value=4e-17  Score=150.89  Aligned_cols=210  Identities=14%  Similarity=0.220  Sum_probs=136.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ++++|+|||+|.||.++|..|+++  ||+|++||+++++++.+.+..    +..++.+++.         ....++.+++
T Consensus         4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~---------~~~~~~~~t~   74 (467)
T 2q3e_A            4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVES---------CRGKNLFFST   74 (467)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHH---------HBTTTEEEES
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHH---------hhcCCEEEEC
Confidence            457999999999999999999999  899999999999877642100    0000000100         0113467778


Q ss_pred             Cccc-cCCCcEEEEeccccHHH-------------HHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCC-eEE
Q 022434           78 NLKD-LHSADIIVEAIVESEDV-------------KKKLFSELDKITKASAILASNTSSISI---TRLASATSRPC-QVI  139 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~~~-------------k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~-~~~  139 (297)
                      ++++ +++||+||.|+|++...             ...+.+++.+.++++++|+ ++|+.++   +.+.+.+.... ..+
T Consensus        75 ~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~g~~~~l~~~l~~~~~~~~  153 (467)
T 2q3e_A           75 NIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT-EKSTVPVRAAESIRRIFDANTKPNL  153 (467)
T ss_dssp             CHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEE-ECSCCCTTHHHHHHHHHHHTCCTTC
T ss_pred             CHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEE-ECCcCCchHHHHHHHHHHHhCCCCC
Confidence            8765 78999999999876532             2456677888888888775 3334433   23444332111 001


Q ss_pred             Ee-ecCCCCCCCceEE---------Ee-cCCC--CcHHHHHHHHHHHHHc-CCeEEEeccc-----hhhhHHHHH---HH
Q 022434          140 GM-HFMNPPPLMKLVE---------VI-RGAD--TSDETFRATKALAERF-GKTVVCSQDY-----AGFIVNRIL---MP  197 (297)
Q Consensus       140 g~-h~~~p~~~~~~ve---------i~-~~~~--~~~~~~~~~~~ll~~l-g~~~i~v~d~-----~g~i~nri~---~~  197 (297)
                      .. -.++|....+...         ++ .++.  .+++..+.++++++.+ +..++++.+.     ..++.|.+.   .+
T Consensus       154 d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia  233 (467)
T 2q3e_A          154 NLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRIS  233 (467)
T ss_dssp             EEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHH
Confidence            11 1234544433221         33 3322  2788999999999998 7777777653     235666543   57


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          198 MINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       198 ~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      ++||++.++++.+++++++..++...
T Consensus       234 ~~nE~~~l~~~~Gid~~~v~~~~~~~  259 (467)
T 2q3e_A          234 SINSISALCEATGADVEEVATAIGMD  259 (467)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence            89999999999889999999888753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.72  E-value=4.2e-16  Score=136.69  Aligned_cols=168  Identities=14%  Similarity=0.163  Sum_probs=113.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc---
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD---   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---   81 (297)
                      +++|+|||+|.||..+|..|+++|++|++||+++++++.+           .+.|............++..+++.+.   
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAI-----------RKNGLIADFNGEEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHHCEEEEETTEEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-----------HhCCEEEEeCCCeeEecceeecchhhccc
Confidence            4689999999999999999999999999999999877665           22232100000000112223332222   


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEE-EeecCCCCCCCc--------
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFMNPPPLMK--------  151 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~~p~~~~~--------  151 (297)
                      ++++|+||.|+|...  ..+++.++.+.++++++|++.+++++. +.+.+.+.. .+++ +.+++.++...+        
T Consensus        72 ~~~~d~vi~~v~~~~--~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~-~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTKAQQ--LDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK-ENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSCHHH--HHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCG-GGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEecccc--HHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCC-ccEEEEEeeeeeEEcCCCEEEEecC
Confidence            348999999999653  467888898888888988888888776 556666543 3565 544443322111        


Q ss_pred             -eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc
Q 022434          152 -LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       152 -~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~  186 (297)
                       .+.+....+++++..+.+.++|+.+|..+++.+|.
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~  184 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV  184 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence             13344444568899999999999999988887664

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.72  E-value=2.1e-17  Score=143.81  Aligned_cols=188  Identities=20%  Similarity=0.259  Sum_probs=130.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||..+|..|++.|++|++|| ++++++.+           .+.|.             ...+++++ ++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADEL-----------LSLGA-------------VNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHH-----------HTTTC-------------BCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHH-----------HHcCC-------------cccCCHHHHHh
Confidence            4689999999999999999999999999999 88776654           22232             23455555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCCC--------c
Q 022434           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLM--------K  151 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~--------~  151 (297)
                      ++|+||.|+|.+.+++..+..  ++.+.++++++|++.+++.+  ...+.+.+...    +.||++.|...        .
T Consensus        58 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g~  133 (295)
T 1yb4_A           58 FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREGT  133 (295)
T ss_dssp             TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTC
T ss_pred             cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcCC
Confidence            999999999987765443332  56667778888876555533  34566655321    34444443211        1


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hhh---hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g~---i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      +..++ +  ++++.++.++++|+.+|.+++++++. .+.   ++++.+    ...++|++.++++.+++++++...+..+
T Consensus       134 ~~~~~-~--~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~  210 (295)
T 1yb4_A          134 LSIMV-G--GEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGG  210 (295)
T ss_dssp             EEEEE-E--SCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSS
T ss_pred             eEEEE-C--CCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            23333 3  37899999999999999998887653 332   333333    3578999999998888999998888755


Q ss_pred             c
Q 022434          224 T  224 (297)
Q Consensus       224 ~  224 (297)
                      .
T Consensus       211 ~  211 (295)
T 1yb4_A          211 F  211 (295)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.7e-17  Score=153.91  Aligned_cols=195  Identities=14%  Similarity=0.158  Sum_probs=133.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ..+|+|||+|.||.+||..|+++||+|++|||++++++.+.+.          ...         ...+..++++++ ++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~~~---------~~gi~~~~s~~e~v~   70 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN----------EAK---------GKSIIGATSIEDFIS   70 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT----------TTT---------TSSEECCSSHHHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc----------ccc---------CCCeEEeCCHHHHHh
Confidence            3579999999999999999999999999999999988766210          100         012355667665 55


Q ss_pred             C---CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCCCCC-CCceEEEe
Q 022434           84 S---ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPP-LMKLVEVI  156 (297)
Q Consensus        84 ~---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~-~~~~vei~  156 (297)
                      +   +|+||.+||.+..++ .++.++.+.++++.+|++.+++.+.  ..+.+.+. ...++++......|. ......++
T Consensus        71 ~l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im  149 (497)
T 2p4q_A           71 KLKRPRKVMLLVKAGAPVD-ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLM  149 (497)
T ss_dssp             TSCSSCEEEECCCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEE
T ss_pred             cCCCCCEEEEEcCChHHHH-HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEE
Confidence            5   999999999876644 5667888888888887766555543  34554442 123454443222221 00011355


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCe------EEEecc-chhh----hHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHh
Q 022434          157 RGADTSDETFRATKALAERFGKT------VVCSQD-YAGF----IVNRIL---MPMINEAFFTLYTG-VATKEDIDAGMK  221 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~------~i~v~d-~~g~----i~nri~---~~~~~Ea~~l~~~g-~~~~~~id~a~~  221 (297)
                      .+  ++++.++.++++|+.+|.+      ++++++ ..|.    +.|.+.   ...++|++.++++. +++++++..++.
T Consensus       150 ~g--g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~  227 (497)
T 2p4q_A          150 PG--GSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFA  227 (497)
T ss_dssp             EE--ECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             ec--CCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            54  5788999999999999998      566653 3332    344443   46789999999983 689999887763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.71  E-value=6.2e-16  Score=137.75  Aligned_cols=197  Identities=14%  Similarity=0.170  Sum_probs=134.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~   79 (297)
                      |....++|+|||+|.||.++|..|+++|++|++||+++++++.+.           +.+.... ..-.....++.+++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~-----------~~~~~~~~l~g~~l~~~i~~t~d~   93 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQ-----------AEGVNNRYLPNYPFPETLKAYCDL   93 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHH-----------HHSSBTTTBTTCCCCTTEEEESCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HcCCCcccCCCCccCCCeEEECCH
Confidence            444457999999999999999999999999999999998877652           2221100 0001123567788888


Q ss_pred             cc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH------HHhhhcCCCCeEEEeecCCCCCC---
Q 022434           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT------RLASATSRPCQVIGMHFMNPPPL---  149 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~------~l~~~~~~~~~~~g~h~~~p~~~---  149 (297)
                      ++ ++++|+||.++|..  ...++++++.+.++++++|++.++++...      .+.+.++. ..+.   +...|..   
T Consensus        94 ~ea~~~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~---vlsgP~~a~e  167 (356)
T 3k96_A           94 KASLEGVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMA---VISGPSLATE  167 (356)
T ss_dssp             HHHHTTCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEE---EEESSCCHHH
T ss_pred             HHHHhcCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEE---EEECccHHHH
Confidence            65 89999999999965  46788899999999999998888877763      34444431 1221   1222221   


Q ss_pred             ----CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh-----h----------------HH----HHHHHHHH
Q 022434          150 ----MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----I----------------VN----RILMPMIN  200 (297)
Q Consensus       150 ----~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~-----i----------------~n----ri~~~~~~  200 (297)
                          .+..-++.+  .+++..+.++++|...+.++++..|..|.     +                .+    .++...++
T Consensus       168 v~~g~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~  245 (356)
T 3k96_A          168 VAANLPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLT  245 (356)
T ss_dssp             HHTTCCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence                112222222  57889999999999999999888776541     1                11    12334578


Q ss_pred             HHHHHHHcCCCCHHHH
Q 022434          201 EAFFTLYTGVATKEDI  216 (297)
Q Consensus       201 Ea~~l~~~g~~~~~~i  216 (297)
                      |+.++.+.-+++++.+
T Consensus       246 E~~~l~~a~G~~~~t~  261 (356)
T 3k96_A          246 EMGRLVSVFGGKQETL  261 (356)
T ss_dssp             HHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHhCCChHhh
Confidence            9999998877787754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.70  E-value=5.7e-16  Score=132.33  Aligned_cols=187  Identities=13%  Similarity=0.116  Sum_probs=127.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||..++..|.+.|++|.+||+++++++.+.+.          .|.             ...+++++ ++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~----------~g~-------------~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LAL-------------PYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HTC-------------CBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHH----------cCC-------------EeeCCHHHHHh
Confidence            4689999999999999999999999999999999887665221          132             23455555 67


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc-eEEEecCCCCc
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIRGADTS  162 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vei~~~~~~~  162 (297)
                      ++|+||.|+|...  ..+++.++    .+++++++.+++++++.+.+.+....+++..++..|..... ...++.+..++
T Consensus        60 ~~D~Vi~~v~~~~--~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIKPQL--FETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSCGGG--HHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeCcHh--HHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            9999999999442  33444433    36678887888888888877776555777777666654433 45566776679


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeccchh-hh------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022434          163 DETFRATKALAERFGKTVVCSQDYAG-FI------VNRILMPMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v~d~~g-~i------~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      ++.++.++++++.+| .++++++..- .+      .+.++..+.......+.+.+.++++.-.++.
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~  198 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVT  198 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999 5777754211 01      1223333333333334444567776655554

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.70  E-value=2e-15  Score=130.34  Aligned_cols=153  Identities=18%  Similarity=0.154  Sum_probs=113.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|||+|.||..+|..|.+.|++|++||+++++++.+           .+.|...           ...+++++++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g~~~-----------~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-----------VERQLVD-----------EAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HhCCCCc-----------cccCCHHHhCCC
Confidence            479999999999999999999999999999999877655           2233210           234555555889


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCC------------C
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL------------M  150 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~------------~  150 (297)
                      |+||.|+|..  ....++.++.+.++++++|++. ++...   +.+.+..   .++++.|++..+..            .
T Consensus        59 D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~---~~~~~~~p~~g~~~~gp~~a~~~~~~g  132 (279)
T 2f1k_A           59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLW---SGFIGGHPMAGTAAQGIDGAEENLFVN  132 (279)
T ss_dssp             SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHS---TTCEEEEECCCCSCSSGGGCCTTTTTT
T ss_pred             CEEEEECCHH--HHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHh---CCEeecCcccCCccCCHHHHhHHHhCC
Confidence            9999999965  3567888888888888888754 44443   3444433   27888888753211            1


Q ss_pred             ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc
Q 022434          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~  186 (297)
                      ....++++..++++..+.++++|+.+|.+++++.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~  168 (279)
T 2f1k_A          133 APYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPA  168 (279)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCHH
T ss_pred             CcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence            245667766779999999999999999999888653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.70  E-value=5.7e-16  Score=134.50  Aligned_cols=157  Identities=18%  Similarity=0.153  Sum_probs=117.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +++|+|||+|.||.++|..|+++  |++|++||+++++++.+           .+.|...           ..++++++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-----------~~~g~~~-----------~~~~~~~~~   63 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIA-----------LERGIVD-----------EATADFKVF   63 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHH-----------HHTTSCS-----------EEESCTTTT
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHH-----------HHcCCcc-----------cccCCHHHh
Confidence            57999999999999999999988  68999999999877655           2334311           24556655 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEecCCCCc--HHHHhhhcCC-CCeEEEeecC------CCCC---
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFM------NPPP---  148 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~------~p~~---  148 (297)
                      ++++|+||+|+|....  ..++.++.+. ++++++|++.++...  .+.+.+.+.. ..++++.||+      .|..   
T Consensus        64 ~~~aDvVilavp~~~~--~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~  141 (290)
T 3b1f_A           64 AALADVIILAVPIKKT--IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANV  141 (290)
T ss_dssp             GGGCSEEEECSCHHHH--HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCT
T ss_pred             hcCCCEEEEcCCHHHH--HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhH
Confidence            7899999999997653  6778888887 888888774433322  2566666554 5789999988      4432   


Q ss_pred             ---CCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          149 ---LMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       149 ---~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                         ....+.++++..++++.++.++++++.+|..++++.+
T Consensus       142 ~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          142 NLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             TTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             HHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence               1234667777778899999999999999999887754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.69  E-value=4.1e-16  Score=142.96  Aligned_cols=206  Identities=12%  Similarity=0.119  Sum_probs=132.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |+|+|||+|.||.++|..|+++||+|++||+++++++.+.+..    +..++.++..+        ....++.+++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~--------~~~g~l~~t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG--------RQTGRLSGTTDFKK   72 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHH--------HHTTCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhh--------cccCceEEeCCHHH
Confidence            3899999999999999999999999999999999887753210    00000000000        00234678888875


Q ss_pred             -cCCCcEEEEeccccHH---------HHHHHHHHHHhhcCC---CeEEEecCCCCcH----HHHhhhcCC--CCeE-EEe
Q 022434           82 -LHSADIIVEAIVESED---------VKKKLFSELDKITKA---SAILASNTSSISI----TRLASATSR--PCQV-IGM  141 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~---~~ii~s~ts~~~~----~~l~~~~~~--~~~~-~g~  141 (297)
                       +++||+||.|+|++..         ++ .+++++.+.+++   +++|+. .|+.++    +.+.+.+..  +.++ ...
T Consensus        73 ~~~~aDvviiaVptp~~~~~~~dl~~v~-~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~~  150 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGDLDLGYIE-TVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVDF  150 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHHH-HHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred             HhccCCEEEEEcCCCcccCCCcchHHHH-HHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCcE
Confidence             8899999999988653         33 466788887777   777663 333332    223332211  1110 000


Q ss_pred             e-cCCCCCCCceE---------EEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-----hhhhHHHHH---HHHHHHHH
Q 022434          142 H-FMNPPPLMKLV---------EVIRGADTSDETFRATKALAERFGKTVVCSQDY-----AGFIVNRIL---MPMINEAF  203 (297)
Q Consensus       142 h-~~~p~~~~~~v---------ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-----~g~i~nri~---~~~~~Ea~  203 (297)
                      + .++|....+..         .++.+. .+++..+.+.++++.++..+++ .+.     ..++.|.+.   .+++||+.
T Consensus       151 ~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~  228 (436)
T 1mv8_A          151 GVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIG  228 (436)
T ss_dssp             EEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 12444333221         344443 3688999999999999985444 442     234555543   57899999


Q ss_pred             HHHHcCCCCHHHHHHHHhhc
Q 022434          204 FTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       204 ~l~~~g~~~~~~id~a~~~g  223 (297)
                      .++++.+++++++..++...
T Consensus       229 ~l~~~~Gid~~~v~~~~~~~  248 (436)
T 1mv8_A          229 NIAKAVGVDGREVMDVICQD  248 (436)
T ss_dssp             HHHHHTTSCHHHHHHHHTTC
T ss_pred             HHHHHhCCCHHHHHHHhcCC
Confidence            99999889999999887643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.69  E-value=4.4e-15  Score=128.30  Aligned_cols=155  Identities=19%  Similarity=0.242  Sum_probs=113.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ++|+|||+|.||.++|..|.++|+  +|++||+++++++.+           .+.|...           ..++++++ +
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-----------~~~g~~~-----------~~~~~~~~~~   59 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-----------VDLGIID-----------EGTTSIAKVE   59 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCGGGGG
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----------HHCCCcc-----------cccCCHHHHh
Confidence            589999999999999999999999  999999999877654           2334321           23456644 7


Q ss_pred             C-CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCC-----------
Q 022434           83 H-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPP-----------  148 (297)
Q Consensus        83 ~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~-----------  148 (297)
                      + ++|+||+|+|...  ...++.++.+.++++++|+..++...  .+.+.+.+..  ++++.|++..+.           
T Consensus        60 ~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~l  135 (281)
T 2g5c_A           60 DFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNL  135 (281)
T ss_dssp             GTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSST
T ss_pred             cCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhHH
Confidence            8 9999999999764  34677788888888887764333322  2455555532  378878765432           


Q ss_pred             -CCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc
Q 022434          149 -LMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       149 -~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~  186 (297)
                       ....+.++++..++++.++.++++++.+|..++++++.
T Consensus       136 ~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~  174 (281)
T 2g5c_A          136 YEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPE  174 (281)
T ss_dssp             TTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCHH
T ss_pred             hCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence             12246677776789999999999999999998887653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.67  E-value=5.2e-16  Score=143.74  Aligned_cols=206  Identities=13%  Similarity=0.167  Sum_probs=132.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      +++|+|||+|.||.++|..|+++  ||+|++||+++++++.+.+...    ..++.+++.         ....++.++++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~---------~~~~~l~~t~~   79 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFA---------ARGRNLFFSSD   79 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHH---------HBTTTEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHH---------hhcCCEEEECC
Confidence            46999999999999999999998  7999999999998877521000    000000000         01234678888


Q ss_pred             ccc-cCCCcEEEEeccccHH-------------HHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCC--C----
Q 022434           79 LKD-LHSADIIVEAIVESED-------------VKKKLFSELDKITKASAILASNTSSISI---TRLASATSR--P----  135 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~-------------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~--~----  135 (297)
                      +++ +++||+||.|+|++..             ....+++.+.+.++++++|+. .|++++   +.+.+.+..  .    
T Consensus        80 ~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~~~~~~  158 (481)
T 2o3j_A           80 IPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQKNNEN  158 (481)
T ss_dssp             HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHTC----
T ss_pred             HHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhhCcCcC
Confidence            754 8899999999987542             355677888888888887763 334433   334433321  1    


Q ss_pred             Ce-EEEeecCCCCCCCce---------EEEecCCCCc---HHHHHHHHHHHHHcCC-eEEEeccch-----hhhHHHH--
Q 022434          136 CQ-VIGMHFMNPPPLMKL---------VEVIRGADTS---DETFRATKALAERFGK-TVVCSQDYA-----GFIVNRI--  194 (297)
Q Consensus       136 ~~-~~g~h~~~p~~~~~~---------vei~~~~~~~---~~~~~~~~~ll~~lg~-~~i~v~d~~-----g~i~nri--  194 (297)
                      .. .+..   +|....+.         ..++.|...+   +++++.++++++.++. .++++.+..     .++.|.+  
T Consensus       159 ~d~~v~~---~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a  235 (481)
T 2o3j_A          159 LKFQVLS---NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLA  235 (481)
T ss_dssp             CCEEEEE---CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHH
T ss_pred             CceEEEe---CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHH
Confidence            11 1222   33322221         1344332222   3688899999999986 677665432     2344442  


Q ss_pred             -HHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434          195 -LMPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       195 -~~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                       ..+++||+..+++..+++++++..++..+
T Consensus       236 ~~ia~~nE~~~la~~~Gid~~~v~~~~~~~  265 (481)
T 2o3j_A          236 QRISSINSISAVCEATGAEISEVAHAVGYD  265 (481)
T ss_dssp             HHHHHHHHHHHHHHHHSCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHccC
Confidence             35789999999999788999998887654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.66  E-value=6.2e-16  Score=142.95  Aligned_cols=193  Identities=18%  Similarity=0.204  Sum_probs=132.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||..|+++|++|++|||++++++.+.+.          .+          ...+..++++++ ++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~----------~~----------~~gi~~~~s~~e~v~   74 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAE----------NP----------GKKLVPYYTVKEFVE   74 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHH----------ST----------TSCEEECSSHHHHHH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhh----------CC----------CCCeEEeCCHHHHHh
Confidence            4689999999999999999999999999999999988766321          00          012456677765 55


Q ss_pred             C---CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCCCCC-CCceEEEe
Q 022434           84 S---ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPP-LMKLVEVI  156 (297)
Q Consensus        84 ~---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~-~~~~vei~  156 (297)
                      +   +|+||.+||....+ ..++.++.+.++++++|++.+++.+.  ..+.+.+. ...++++......|. ......++
T Consensus        75 ~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~  153 (480)
T 2zyd_A           75 SLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIM  153 (480)
T ss_dssp             TBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEE
T ss_pred             CCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEE
Confidence            5   99999999986553 45667888888888888766666643  34554442 233455442222111 00111355


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCe-------EEEeccc-hh----hhHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHHH
Q 022434          157 RGADTSDETFRATKALAERFGKT-------VVCSQDY-AG----FIVNRIL---MPMINEAFFTLYT-GVATKEDIDAGM  220 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~-------~i~v~d~-~g----~i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a~  220 (297)
                      .+  ++++.++.++++|+.+|.+       +.++++. .|    ++.|.+.   ...++|++.++++ .+++++++..++
T Consensus       154 ~g--g~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~  231 (480)
T 2zyd_A          154 PG--GQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTF  231 (480)
T ss_dssp             EE--SCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             ec--CCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            55  5799999999999999987       5666542 22    2344432   4678999999998 357998887766

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.66  E-value=2.3e-16  Score=136.82  Aligned_cols=188  Identities=15%  Similarity=0.150  Sum_probs=127.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|++ |++|++||+++++.+.+.           +.|.             ...+ +++ +++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~-----------~~g~-------------~~~~-~~~~~~~   55 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQ-----------EEFG-------------SEAV-PLERVAE   55 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHH-----------HHHC-------------CEEC-CGGGGGG
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH-----------HCCC-------------cccC-HHHHHhC
Confidence            479999999999999999999 999999999998876652           2222             1233 444 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCC-CCeEEEeecCCC-CCC--CceEEEecC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMNP-PPL--MKLVEVIRG  158 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~p-~~~--~~~vei~~~  158 (297)
                      +|+||.|+|.+..++ .++.++.+.++++++|++.++..+  ...+.+.+.. ..+++.. ++.+ +..  .+...++.+
T Consensus        56 ~D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~  133 (289)
T 2cvz_A           56 ARVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG  133 (289)
T ss_dssp             CSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred             CCEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence            999999999876544 456778777888887774433322  3456665533 2234433 2111 100  011123333


Q ss_pred             CCCcHHHHHHHHHHHHHcCCeEEEeccc-hhh----hHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          159 ADTSDETFRATKALAERFGKTVVCSQDY-AGF----IVNRI---LMPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g~----i~nri---~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                        ++++.++.++++| .+|.+++++++. .+.    ..|.+   +...++|++.++++.+++++++...+..+.
T Consensus       134 --~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  204 (289)
T 2cvz_A          134 --GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASS  204 (289)
T ss_dssp             --SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             --CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccC
Confidence              5789999999999 999988887653 222    23433   346789999999988889999888887554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.66  E-value=1.3e-14  Score=124.16  Aligned_cols=180  Identities=13%  Similarity=0.166  Sum_probs=118.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      |+|+|||+|.||.+||..|+++||+|++||+  +++.++.+           .+.|.             .  ++.++ +
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~-----------~~~g~-------------~--~~~~~~~   54 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERA-----------RTVGV-------------T--ETSEEDV   54 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHH-----------HHHTC-------------E--ECCHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHH-----------HHCCC-------------c--CCHHHHH
Confidence            3799999999999999999999999999998  66655543           22332             2  44544 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCC--CceEEEec
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL--MKLVEVIR  157 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~--~~~vei~~  157 (297)
                      +++|+||+|+|++...+.  +.++.+.+++  ++++ +++..+   ..+.+.+.... ++..+.+.+|..  .+...++.
T Consensus        55 ~~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~-~s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~~~~~  128 (264)
T 1i36_A           55 YSCPVVISAVTPGVALGA--ARRAGRHVRG--IYVD-INNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIRIIAS  128 (264)
T ss_dssp             HTSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEE-CSCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCEEEEE
T ss_pred             hcCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEE-ccCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCeEEec
Confidence            899999999998765433  3566666666  4443 344432   46777665444 666666655421  12232333


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccchhh-----hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDYAGF-----IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~-----i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +   +..  +.+++ |+.+|++++++++.+|.     ++++.+    ...++|++.++++.+++++.+ ..+....
T Consensus       129 g---~~~--~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~~~~~  197 (264)
T 1i36_A          129 G---RDA--EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EMLEYTE  197 (264)
T ss_dssp             S---TTH--HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTS
T ss_pred             C---CcH--HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHhc
Confidence            3   222  77788 99999998888754442     444433    467889999988877777644 4444333

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.65  E-value=3.3e-16  Score=150.80  Aligned_cols=99  Identities=28%  Similarity=0.308  Sum_probs=92.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCC-CCCCCcH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGD-SKYAPCP  262 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~-~~~~p~~  262 (297)
                      ..+..|++.+++||+++++++|++ ++.|||.++.+|+|||.   |||+|+|.+|++.+++.|+.+++.+++ ++|+|++
T Consensus       636 ~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~  715 (742)
T 3zwc_A          636 EEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSD  715 (742)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCH
Confidence            469999999999999999999998 59999999999999998   999999999999999999999999998 6899999


Q ss_pred             HHHHHHHcCCCCcccCCcccccCC
Q 022434          263 LLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       263 ~l~~~~~~g~~G~~~g~Gfy~~~~  286 (297)
                      +|++|+++|....+.++|||.+.+
T Consensus       716 ~L~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          716 YLRRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             HHHHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHHHcCCCcccccccccCCCC
Confidence            999999999988888888888764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.65  E-value=3.2e-15  Score=127.80  Aligned_cols=147  Identities=15%  Similarity=0.174  Sum_probs=108.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+|.||.+||..|+++|    ++|++||+++++                 .|             +...++.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            468999999999999999999999    799999999763                 12             24455665


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc-eEEEecC
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIRG  158 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vei~~~  158 (297)
                      + ++++|+||+|+|...  ..+++.++.+.+ ++.++++.+++++.+.+.+.+....+++...+..|..... ...++.+
T Consensus        54 ~~~~~~D~vi~~v~~~~--~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVKPDI--AGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSCTTT--HHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeCHHH--HHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            4 788999999999653  567778887777 5667778889998887777765433443222222322222 3335566


Q ss_pred             CCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          159 ADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       159 ~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      ..++++.++.++++|+.+|. ++++++
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~  156 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKE  156 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence            66789999999999999997 777754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.65  E-value=3e-15  Score=138.44  Aligned_cols=194  Identities=18%  Similarity=0.179  Sum_probs=132.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..+|..|+++|++|++|||++++++.+.+.          .+          ...+..++++++ ++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----------~~----------~~gi~~~~s~~e~v~   64 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKE----------HQ----------DKNLVFTKTLEEFVG   64 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TT----------TSCEEECSSHHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHh----------Cc----------CCCeEEeCCHHHHHh
Confidence            3689999999999999999999999999999999988766321          00          012456667765 44


Q ss_pred             C---CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCC-CCeEEEeecCCCCC-CCceEEEe
Q 022434           84 S---ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMNPPP-LMKLVEVI  156 (297)
Q Consensus        84 ~---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~p~~-~~~~vei~  156 (297)
                      +   +|+||.|+|....++ .++.++.+.++++++|++.+++.+.  .++.+.+.. ..++++.....+|. ......++
T Consensus        65 ~l~~aDvVilavp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~  143 (474)
T 2iz1_A           65 SLEKPRRIMLMVQAGAATD-ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMM  143 (474)
T ss_dssp             TBCSSCEEEECCCTTHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEE
T ss_pred             hccCCCEEEEEccCchHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEE
Confidence            4   999999999876544 5667888888888887766655543  456665543 23454443222211 00011244


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCe--------EEEecc-chh----hhHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHH
Q 022434          157 RGADTSDETFRATKALAERFGKT--------VVCSQD-YAG----FIVNRIL---MPMINEAFFTLYT-GVATKEDIDAG  219 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~--------~i~v~d-~~g----~i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a  219 (297)
                      .+  ++++.++.++++|+.+|.+        +.++++ ..|    ++.|.+.   ...++|++.+++. .+++++++..+
T Consensus       144 ~g--g~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l  221 (474)
T 2iz1_A          144 PG--GQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAI  221 (474)
T ss_dssp             EE--ECHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             ec--CCHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            44  5889999999999999987        455554 223    2444443   4678999999998 46799888877


Q ss_pred             Hh
Q 022434          220 MK  221 (297)
Q Consensus       220 ~~  221 (297)
                      +.
T Consensus       222 ~~  223 (474)
T 2iz1_A          222 FE  223 (474)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.64  E-value=7.3e-16  Score=128.51  Aligned_cols=153  Identities=18%  Similarity=0.260  Sum_probs=109.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ++++|+|||+|.||..+|..|+++|++|++ +||++++++.+.+.          .|..            ...++.+.+
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~----------~g~~------------~~~~~~~~~   79 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR----------FGAS------------VKAVELKDA   79 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHH----------HTTT------------EEECCHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------hCCC------------cccChHHHH
Confidence            357999999999999999999999999999 99999887765221          1210            233444558


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--------------cHHHHhhhcCCCCeEEEeecCCCCC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--------------SITRLASATSRPCQVIGMHFMNPPP  148 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--------------~~~~l~~~~~~~~~~~g~h~~~p~~  148 (297)
                      +++|+||.|+|...  ..+++.++.+ . ++++|++.+.++              ..+.+++.++ ..+++...++.|+.
T Consensus        80 ~~aDvVilavp~~~--~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~~  154 (220)
T 4huj_A           80 LQADVVILAVPYDS--IADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPAA  154 (220)
T ss_dssp             TTSSEEEEESCGGG--HHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCHH
T ss_pred             hcCCEEEEeCChHH--HHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCHH
Confidence            89999999998543  5567777665 4 467777777776              3467777765 34555554433321


Q ss_pred             CC---------ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          149 LM---------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       149 ~~---------~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      ..         +...++.+  .+++..+.++++++.+|++++.+++
T Consensus       155 v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          155 VLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             HHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             HhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            11         12233343  5799999999999999999999876

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.63  E-value=1.1e-16  Score=145.96  Aligned_cols=92  Identities=22%  Similarity=0.274  Sum_probs=77.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCC-CCCcH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGVAT-KEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSK-YAPCP  262 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~~-~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~-~~p~~  262 (297)
                      ..+.+|++.+++||+++++++|+++ ++|||.++.+|+|||.   |||+|+|.+|++.++..++.|.+.+++.+ |+|++
T Consensus       356 ~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~~  435 (460)
T 3k6j_A          356 QDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVAD  435 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            5689999999999999999999995 9999999999999998   99999999999999999999999999954 99999


Q ss_pred             HHHHHHHcCCCCcccCC
Q 022434          263 LLVQYVDAGRLGKKRGI  279 (297)
Q Consensus       263 ~l~~~~~~g~~G~~~g~  279 (297)
                      +|++|+++|++|+|||.
T Consensus       436 ~L~~~a~~g~~~~~~~~  452 (460)
T 3k6j_A          436 ALKTANVSTGSSGSSGG  452 (460)
T ss_dssp             HHHHHC-----------
T ss_pred             HHHHHHHcCCCccccCC
Confidence            99999999999999994

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.63  E-value=1.9e-15  Score=140.02  Aligned_cols=194  Identities=14%  Similarity=0.150  Sum_probs=131.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c--
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L--   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~--   82 (297)
                      ++|+|||+|.||..+|..|+++||+|++|||++++++.+.+.          ..  .       -..+..++++++ +  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~~--~-------g~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----------EA--K-------GTKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT----------TT--T-------TSSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----------cc--c-------CCCeEEeCCHHHHHhh
Confidence            579999999999999999999999999999999988766210          00  0       012456677766 3  


Q ss_pred             -CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcC-CCCeEEEeecCCCCCC-CceEEEec
Q 022434           83 -HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        83 -~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vei~~  157 (297)
                       +++|+||.|+|....++ .++.++.+.++++++|++.+++.+.  ..+.+.+. ....+++...+.++.. .....++.
T Consensus        64 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~  142 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMP  142 (482)
T ss_dssp             BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             ccCCCEEEEeCCChHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEe
Confidence             48999999999876544 5667888888888887766655543  34544442 2334554432222210 00112344


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeE-------EEecc-chh----hhHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHh
Q 022434          158 GADTSDETFRATKALAERFGKTV-------VCSQD-YAG----FIVNRIL---MPMINEAFFTLYTG-VATKEDIDAGMK  221 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~-------i~v~d-~~g----~i~nri~---~~~~~Ea~~l~~~g-~~~~~~id~a~~  221 (297)
                      +  ++++.++.++++|+.+|.++       +++++ ..+    ++.|.+.   ...++|++.+++.. +++++++..++.
T Consensus       143 g--g~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~  220 (482)
T 2pgd_A          143 G--GNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE  220 (482)
T ss_dssp             E--ECTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence            4  46788999999999999876       44432 222    3444443   46789999999987 889998887764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.62  E-value=4.7e-15  Score=137.12  Aligned_cols=197  Identities=16%  Similarity=0.147  Sum_probs=132.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH-   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-   83 (297)
                      ++|+|||+|.||..+|..|+++|++|++|||++++++.+.+.          .|.. +.     ..++..++++++ ++ 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~-~~-----~~~i~~~~~~~e~v~~   65 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASA-PF-----AGNLKAFETMEAFAAS   65 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTS-TT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCC-CC-----CCCeEEECCHHHHHhc
Confidence            479999999999999999999999999999999988766221          1211 00     023456677765 44 


Q ss_pred             --CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCC-CCeEEEeecCCCCCC-CceEEEec
Q 022434           84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~p~~~-~~~vei~~  157 (297)
                        ++|+||.|+|....++ .++.++.+.++++++|++.+++.+.  ..+.+.+.. ...+++.....++.. .....++.
T Consensus        66 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~  144 (478)
T 1pgj_A           66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFP  144 (478)
T ss_dssp             BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             ccCCCEEEEecCChHHHH-HHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEec
Confidence              5999999999875543 5667888888888887766555543  455554432 334544433222210 00112444


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCe-------EEEeccc-hh----hhHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022434          158 GADTSDETFRATKALAERFGKT-------VVCSQDY-AG----FIVNRIL---MPMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~-------~i~v~d~-~g----~i~nri~---~~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +  ++++.++.++++++.+|.+       ++++++. .+    ++.|.+.   ..+++|++.+++..+++++++..++.
T Consensus       145 g--g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~  221 (478)
T 1pgj_A          145 G--GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE  221 (478)
T ss_dssp             E--ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             c--CCHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4  5789999999999999987       5555542 22    2334333   35789999999988889998888775

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.62  E-value=3e-14  Score=129.15  Aligned_cols=202  Identities=14%  Similarity=0.121  Sum_probs=129.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      .+.+|+|||+|+||.++|..|++.||+|+.+|+|+++++.+.+.        ++..+.+.++.            +++.+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~------------g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSS------------GRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT------------TCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHc------------CCeeE
Confidence            46799999999999999999999999999999999999876432        12223333333            45678


Q ss_pred             ecCccc-cCCCcEEEEecccc--------HHHHHHHHHHHHhhcC----CCeEEEecCCCCcH-HHHhh-hc---CCCCe
Q 022434           76 TSNLKD-LHSADIIVEAIVES--------EDVKKKLFSELDKITK----ASAILASNTSSISI-TRLAS-AT---SRPCQ  137 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~--------~~~k~~~~~~l~~~~~----~~~ii~s~ts~~~~-~~l~~-~~---~~~~~  137 (297)
                      +++.++ +++||++|.|||++        ........+.|.+.++    ...||.-+|..+.. +++.. .+   .....
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~  167 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVK  167 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCC
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCC
Confidence            888876 89999999999863        2334455556665553    23445444433332 22221 11   11111


Q ss_pred             E-EEeecCCCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh----hhHHHHH---HHHHH
Q 022434          138 V-IGMHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG----FIVNRIL---MPMIN  200 (297)
Q Consensus       138 ~-~g~h~~~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g----~i~nri~---~~~~~  200 (297)
                      | ++   ++|..+.+.         ..++.|. +++.+.+.+..+++.+....+++.....    .+.|.+.   .+++|
T Consensus       168 f~v~---~~PErl~eG~a~~d~~~~~riViG~-~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~N  243 (444)
T 3vtf_A          168 FSVA---SNPEFLREGSALEDFFKPDRIVIGA-GDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFAN  243 (444)
T ss_dssp             CEEE---ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceee---cCcccccCCccccccccCCcEEEcC-CCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHHH
Confidence            1 21   244443321         1233332 5778888899999888776655432222    2333332   47899


Q ss_pred             HHHHHHHcCCCCHHHHHHHHh
Q 022434          201 EAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       201 Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      |...++++-++|..++-.++.
T Consensus       244 Ela~ice~~GiDv~eV~~a~~  264 (444)
T 3vtf_A          244 EVGLLAKRLGVDTYRVFEAVG  264 (444)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHhc
Confidence            999999998899988877764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.60  E-value=1.7e-14  Score=127.78  Aligned_cols=150  Identities=19%  Similarity=0.183  Sum_probs=106.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++|+|||+|.||.++|..|..+|++|+++|+++++ .+.+           .+.|.             ... +.++ +
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a-----------~~~G~-------------~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHGL-------------KVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTTC-------------EEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHH-----------HHCCC-------------EEc-cHHHHH
Confidence            368999999999999999999999999999998765 3322           23332             233 5544 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHH-HHHhhcCCCeEEEecCCCCcHHHHhhhc-CCCCeEEEeecCCCCCC---------Cc
Q 022434           83 HSADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNTSSISITRLASAT-SRPCQVIGMHFMNPPPL---------MK  151 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~~~l~~~~-~~~~~~~g~h~~~p~~~---------~~  151 (297)
                      ++||+||.|+|....  ..++. ++.+.++++++|++. +++.. .+.... ....++++.||..|.+.         ..
T Consensus        71 ~~aDvVilavp~~~~--~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           71 AAADVVMILTPDEFQ--GRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             HTCSEEEECSCHHHH--HHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             hcCCEEEEeCCcHHH--HHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            899999999997653  57777 888888888888755 44444 333322 22235899999766531         11


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCC-e--EEEe
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGK-T--VVCS  183 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~-~--~i~v  183 (297)
                      .+-++++..++++..+.+..+++.+|. .  ++.+
T Consensus       147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~  181 (338)
T 1np3_A          147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIET  181 (338)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEEC
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEee
Confidence            122455555778889999999999998 4  5555

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.59  E-value=5.5e-14  Score=127.38  Aligned_cols=203  Identities=16%  Similarity=0.195  Sum_probs=125.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |+|+|||+|.||.++|..|++ ||+|++||+++++++.+.+..    +..++.++.          ....++.+++++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~----------~~~~~l~~t~~~~~   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLK----------SKQLSIKATLDSKA   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHH----------HSCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHH----------hccCcEEEeCCHHH
Confidence            489999999999999999999 999999999999887652210    000011111          01235567777754


Q ss_pred             -cCCCcEEEEeccccH---------HHHHHHHHHHHhhcCCCeEEEe-cCCCCcH-HHHhhhcCCCCeEEEe-ecCCCCC
Q 022434           82 -LHSADIIVEAIVESE---------DVKKKLFSELDKITKASAILAS-NTSSISI-TRLASATSRPCQVIGM-HFMNPPP  148 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~---------~~k~~~~~~l~~~~~~~~ii~s-~ts~~~~-~~l~~~~~~~~~~~g~-h~~~p~~  148 (297)
                       +++||+||.|+|...         ....++++.+.+ ++++++|+. +|..+.. +.+.+.+... .++.. .+..|..
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~-~v~~~Pe~~~~G~  147 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD-RIIFSPEFLRESK  147 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS-CEEECCCCCCTTS
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC-eEEECCccccCcc
Confidence             889999999999873         135567777877 777777664 5555544 4666655432 22211 1111211


Q ss_pred             CC-ceE---EEecCCCCc-----HHHHHHHHHHHHHcCC--e-EEEeccch-----hhhHHHHH---HHHHHHHHHHHHc
Q 022434          149 LM-KLV---EVIRGADTS-----DETFRATKALAERFGK--T-VVCSQDYA-----GFIVNRIL---MPMINEAFFTLYT  208 (297)
Q Consensus       149 ~~-~~v---ei~~~~~~~-----~~~~~~~~~ll~~lg~--~-~i~v~d~~-----g~i~nri~---~~~~~Ea~~l~~~  208 (297)
                      .. ...   .++.|....     .+..+.+.+++...+.  . ++++.+..     .++.|.+.   .+++||+..+++.
T Consensus       148 a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~  227 (402)
T 1dlj_A          148 ALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAES  227 (402)
T ss_dssp             TTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 011   144342221     1556677777765332  2 46665532     12344332   4689999999999


Q ss_pred             CCCCHHHHHHHHh
Q 022434          209 GVATKEDIDAGMK  221 (297)
Q Consensus       209 g~~~~~~id~a~~  221 (297)
                      -+++++++..++.
T Consensus       228 ~Gid~~~v~~~~~  240 (402)
T 1dlj_A          228 RKLNSHMIIQGIS  240 (402)
T ss_dssp             TTCCHHHHHHHHH
T ss_pred             hCCCHHHHHHHhc
Confidence            8899999888875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.57  E-value=3.5e-14  Score=127.25  Aligned_cols=193  Identities=15%  Similarity=0.132  Sum_probs=121.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCccc-cC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||.++|..|+++||+|++||+++++++.+.           +.+.... ........++..++++++ ++
T Consensus        16 ~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (366)
T 1evy_A           16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVN-----------EKRENVLFLKGVQLASNITFTSDVEKAYN   84 (366)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHH-----------HHTBCTTTSTTCBCCTTEEEESCHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HcCcccccccccccccceeeeCCHHHHHc
Confidence            3899999999999999999999999999999998877652           2221000 000011234566777765 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHH----HHhhcCC-CeEEEecCCCCcHH---HHhhhcCC--CCeEEEeecCCCCCCC---
Q 022434           84 SADIIVEAIVESEDVKKKLFSE----LDKITKA-SAILASNTSSISIT---RLASATSR--PCQVIGMHFMNPPPLM---  150 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~----l~~~~~~-~~ii~s~ts~~~~~---~l~~~~~~--~~~~~g~h~~~p~~~~---  150 (297)
                      ++|+||.|+|.  ....+++.+    +.+.+++ +++|++.++++.+.   .+.+.+..  +.....  ....|...   
T Consensus        85 ~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~--v~~gp~~~~~~  160 (366)
T 1evy_A           85 GAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLS--VLAGPSFAIEV  160 (366)
T ss_dssp             TCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEE--EEESSCCHHHH
T ss_pred             CCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEE--EEeCCChHHHH
Confidence            99999999996  335677777    8777777 78777777666542   12222211  111000  11122211   


Q ss_pred             ----ceEEEecCCCCcHHHHHHHHHHHHHc--CCeEEEeccchhh-----hH----------------HH----HHHHHH
Q 022434          151 ----KLVEVIRGADTSDETFRATKALAERF--GKTVVCSQDYAGF-----IV----------------NR----ILMPMI  199 (297)
Q Consensus       151 ----~~vei~~~~~~~~~~~~~~~~ll~~l--g~~~i~v~d~~g~-----i~----------------nr----i~~~~~  199 (297)
                          +..-++.  ..+++.++.+.++|+..  +..+++..|..+.     +.                ++    +....+
T Consensus       161 ~~g~~~~~~~~--~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~  238 (366)
T 1evy_A          161 ATGVFTCVSIA--SADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGL  238 (366)
T ss_dssp             HTTCCEEEEEE--CSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HhCCceEEEEe--cCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHH
Confidence                1111222  25778899999999999  8777777664331     11                11    233568


Q ss_pred             HHHHHHHHcCCCCHHH
Q 022434          200 NEAFFTLYTGVATKED  215 (297)
Q Consensus       200 ~Ea~~l~~~g~~~~~~  215 (297)
                      +|++.+++..++++++
T Consensus       239 ~E~~~la~a~Gi~~~~  254 (366)
T 1evy_A          239 LEIRDLTAALGGDGSA  254 (366)
T ss_dssp             HHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHhCCCCcc
Confidence            8999999876666544

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.56  E-value=5.2e-14  Score=119.17  Aligned_cols=164  Identities=16%  Similarity=0.258  Sum_probs=100.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HH-HHHHHHHHH-HHHHHHcCCCChhhhcccCCCcEEecCcc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LV-RATKSISSS-IQKFVSKGQLSQAVGTDAPRRLRCTSNLK-   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   80 (297)
                      .++|+|||+|.||.+||..|+++||+|++|||++++ +. .......+. ++.+.+.           ...+.. ++.+ 
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~e   86 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE-----------HPHVHL-AAFAD   86 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG-----------STTCEE-EEHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh-----------cCceec-cCHHH
Confidence            479999999999999999999999999999999986 11 100000000 0111111           111233 3444 


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHH-HhhcCCCeEEEecCCCC----------------cH-HHHhhhcCCCCeEE-Ee
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSEL-DKITKASAILASNTSSI----------------SI-TRLASATSRPCQVI-GM  141 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l-~~~~~~~~ii~s~ts~~----------------~~-~~l~~~~~~~~~~~-g~  141 (297)
                      .+++||+||.|+|.+...  +++.++ .+.+ ++++|++.+.++                .. +.+++.++. .+++ ++
T Consensus        87 ~~~~aDvVilavp~~~~~--~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~~  162 (245)
T 3dtt_A           87 VAAGAELVVNATEGASSI--AALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKTL  162 (245)
T ss_dssp             HHHHCSEEEECSCGGGHH--HHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEECS
T ss_pred             HHhcCCEEEEccCcHHHH--HHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEee
Confidence            478999999999987643  455566 5555 566666555321                22 455565543 4544 45


Q ss_pred             ecCCCCCC--------CceEEEecCCCCcHHHHHHHHHHHHHcCCe-EEEeccc
Q 022434          142 HFMNPPPL--------MKLVEVIRGADTSDETFRATKALAERFGKT-VVCSQDY  186 (297)
Q Consensus       142 h~~~p~~~--------~~~vei~~~~~~~~~~~~~~~~ll~~lg~~-~i~v~d~  186 (297)
                      ++...|..        .++.-++.+  .+++.++.++++|+.+|.. ++++++.
T Consensus       163 ~~~~a~v~~~~~~a~~g~~~~~v~g--~d~~~~~~v~~ll~~~g~~~~~~~G~~  214 (245)
T 3dtt_A          163 NTMNASLMVDPGRAAGGDHSVFVSG--NDAAAKAEVATLLKSLGHQDVIDLGDI  214 (245)
T ss_dssp             TTSCHHHHHCGGGTGGGCCCEEEEC--SCHHHHHHHHHHHHHTTCCCEEEEESG
T ss_pred             cccCHHHhcCccccCCCCeeEEEEC--CCHHHHHHHHHHHHHcCCCceeccCcH
Confidence            55543311        112223344  4799999999999999975 4777763

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.55  E-value=5e-14  Score=123.58  Aligned_cols=171  Identities=13%  Similarity=0.140  Sum_probs=109.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-----C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChh-hhcccCCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-----G-LDVWLVDTDPDALVRATKSISSSIQKFVS-KGQLSQA-VGTDAPRR   72 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~-----G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~   72 (297)
                      |....++|+|||+|.||..+|..|+++     | ++|++||| +++++.+           .+ .|..... ..+....+
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l-----------~~~~g~~~~~~~~~~~~~~   71 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAI-----------RAAGGLRVVTPSRDFLARP   71 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHH-----------HHHTSEEEECSSCEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHH-----------HhcCCeEEEeCCCCeEEec
Confidence            555557999999999999999999999     9 99999999 7666654           23 3321000 00001112


Q ss_pred             cEEecCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCC--
Q 022434           73 LRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMNPPPL--  149 (297)
Q Consensus        73 i~~~~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~--  149 (297)
                      +..+++.+.++++|+||.|++...  ...++.++.+.++++++|++.+.++.. +.+.+.++...-+.++.++..+..  
T Consensus        72 ~~~~~~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~p  149 (317)
T 2qyt_A           72 TCVTDNPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAP  149 (317)
T ss_dssp             SEEESCHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEET
T ss_pred             ceEecCccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCC
Confidence            344455555789999999999866  356778888888888888877778876 556666643222233333222110  


Q ss_pred             ------Cce-EEEecC--CCCcHHHHHHHHHHHHHcCCeEEEeccc
Q 022434          150 ------MKL-VEVIRG--ADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       150 ------~~~-vei~~~--~~~~~~~~~~~~~ll~~lg~~~i~v~d~  186 (297)
                            ... ..++..  .+.+++.+ .+.++|+..|..+.+.+|.
T Consensus       150 g~~~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di  194 (317)
T 2qyt_A          150 GLITLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDI  194 (317)
T ss_dssp             TEEEEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCH
T ss_pred             CEEEEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHH
Confidence                  111 111322  33456777 8899999999988777664

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.54  E-value=1.3e-13  Score=113.93  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=109.8

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+||| +|.||..++..|+++|++|+++||++++.+.+.+....    .+..            ..+.. ++.++ ++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~   63 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE   63 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence            3799999 99999999999999999999999999877665432211    1110            11232 34444 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--------------HHHHhhhcCCCCeEEEeecCCCCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--------------ITRLASATSRPCQVIGMHFMNPPPL  149 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--------------~~~l~~~~~~~~~~~g~h~~~p~~~  149 (297)
                      ++|+||.++|.+.  ..+++.++.+.++ ++++++.+++++              .+++++.+.. .+++..++..+...
T Consensus        64 ~~D~Vi~~~~~~~--~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~  139 (212)
T 1jay_A           64 ACDIAVLTIPWEH--AIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAAR  139 (212)
T ss_dssp             HCSEEEECSCHHH--HHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHH
T ss_pred             cCCEEEEeCChhh--HHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHH
Confidence            8999999999644  3467777766664 788887887666              5677777653 56765543222111


Q ss_pred             -------CceEEEecCCCCcHHHHHHHHHHHHHc-CCeEEEecc
Q 022434          150 -------MKLVEVIRGADTSDETFRATKALAERF-GKTVVCSQD  185 (297)
Q Consensus       150 -------~~~vei~~~~~~~~~~~~~~~~ll~~l-g~~~i~v~d  185 (297)
                             ..+..++.+.  +++.++.++++++.+ |+.++++++
T Consensus       140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                   1134455553  689999999999999 999988876

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.53  E-value=5.1e-14  Score=126.60  Aligned_cols=192  Identities=14%  Similarity=0.152  Sum_probs=124.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPD-----ALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPR   71 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~   71 (297)
                      +++|+|||+|.||.+||..|+++|       ++|++||++++     +++.+           .+.+.... ........
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~~   89 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDII-----------NNKHENTKYLKGVPLPH   89 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHH-----------HHHCBCTTTSTTCBCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHH-----------HhcCcccccCCcccCcC
Confidence            368999999999999999999999       99999999987     55443           22121000 00011224


Q ss_pred             CcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHh----hcCCCeEEEecCCCCcH-----HH----HhhhcCCCCe
Q 022434           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDK----ITKASAILASNTSSISI-----TR----LASATSRPCQ  137 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~----~~~~~~ii~s~ts~~~~-----~~----l~~~~~~~~~  137 (297)
                      ++..++++++ ++++|+||+|+|+  ....+++.++.+    .+++++++++.++++++     ..    +.+.+..+..
T Consensus        90 ~i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~  167 (375)
T 1yj8_A           90 NIVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCS  167 (375)
T ss_dssp             TEEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEE
T ss_pred             CeEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEE
Confidence            5677777765 7899999999996  346788888888    88889988888877654     11    2222221111


Q ss_pred             EEEeecCCCCCCC-------ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh-----hH--------------
Q 022434          138 VIGMHFMNPPPLM-------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----IV--------------  191 (297)
Q Consensus       138 ~~g~h~~~p~~~~-------~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~-----i~--------------  191 (297)
                      +     ...|...       +..-++.+  .+++..+.++++|+..+.++++..|..+.     +.              
T Consensus       168 v-----~~gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~  240 (375)
T 1yj8_A          168 A-----LSGANIAMDVAMENFSEATIGG--NDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLN  240 (375)
T ss_dssp             E-----EECSCCHHHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             E-----EeCCchHHHHHhCCCeEEEEec--CCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1     1122111       11212222  57788999999999999988888776431     11              


Q ss_pred             --HH----HHHHHHHHHHHHHHcC--CCCHHHH
Q 022434          192 --NR----ILMPMINEAFFTLYTG--VATKEDI  216 (297)
Q Consensus       192 --nr----i~~~~~~Ea~~l~~~g--~~~~~~i  216 (297)
                        ++    +....++|+..+++.-  +++++++
T Consensus       241 ~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~  273 (375)
T 1yj8_A          241 LPTNSKSAIIRNGINEMILFGKVFFQKFNENIL  273 (375)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGG
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhccCCCcchh
Confidence              11    2335678999888754  5666544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.53  E-value=1.9e-13  Score=112.84  Aligned_cols=135  Identities=15%  Similarity=0.141  Sum_probs=99.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .++|+|||+|.||.++|..|+++|++|++||++++                                         .+++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~~   57 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATTL   57 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhcc
Confidence            57899999999999999999999999999998853                                         3458


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---------------HHHHhhhcCCCCeEEE-eecCCCCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---------------ITRLASATSRPCQVIG-MHFMNPPP  148 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---------------~~~l~~~~~~~~~~~g-~h~~~p~~  148 (297)
                      ||+||.|+|. .. ...++.++.+.++ ++++++.+++++               .+.+++.++ ..+++. +|++..|.
T Consensus        58 aD~vi~av~~-~~-~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~  133 (209)
T 2raf_A           58 GEIVIMAVPY-PA-LAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAAT  133 (209)
T ss_dssp             CSEEEECSCH-HH-HHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHH
T ss_pred             CCEEEEcCCc-HH-HHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhh
Confidence            9999999993 33 4577788877777 788887777554               345666554 356766 66654331


Q ss_pred             C--------CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc
Q 022434          149 L--------MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       149 ~--------~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~  186 (297)
                      .        .+..-++.+  .+++..+.++++++.+|.+++++++.
T Consensus       134 ~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~i  177 (209)
T 2raf_A          134 LQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGKL  177 (209)
T ss_dssp             HHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEESG
T ss_pred             ccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCCH
Confidence            1        111222333  46789999999999999999888763

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.53  E-value=7.9e-14  Score=124.35  Aligned_cols=196  Identities=16%  Similarity=0.123  Sum_probs=123.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCChh-hhcccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPD-----ALVRATKSISSSIQKFVSKGQLSQA-VGTDAPR   71 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~   71 (297)
                      .++|+|||+|.||.++|..|+++|       ++|++||++++     ..+.+.           +.+..... .......
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~   76 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIIN-----------TQHENVKYLPGHKLPP   76 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHH-----------HHSCCTTTSTTCCCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHH-----------hcCcccccCCcccCcc
Confidence            468999999999999999999999       99999999987     655442           11110000 0001123


Q ss_pred             CcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--------HH-HhhhcCCCCeEEEe
Q 022434           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--------TR-LASATSRPCQVIGM  141 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--------~~-l~~~~~~~~~~~g~  141 (297)
                      ++..++++++ +++||+||+|+|+..  ..+++.++.+.++++++|++.++++..        .+ +.+.+..+..+. .
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~~~~--~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~-~  153 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVPHQF--IGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVL-M  153 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCCGGG--HHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEE-E
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCCHHH--HHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEE-E
Confidence            4666777765 789999999999743  677888898888889988888876652        11 222222111111 1


Q ss_pred             ecCCCCCC--CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh-----hH----------------H----HH
Q 022434          142 HFMNPPPL--MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----IV----------------N----RI  194 (297)
Q Consensus       142 h~~~p~~~--~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~-----i~----------------n----ri  194 (297)
                      .+..+..+  .....++.+ ..+++..+.+.++|+..|..+++..|..+.     +.                +    .+
T Consensus       154 gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~  232 (354)
T 1x0v_A          154 GANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAV  232 (354)
T ss_dssp             CSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CCCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHH
Confidence            11111000  101112222 256888999999999999988887775431     11                2    22


Q ss_pred             HHHHHHHHHHHHHcCCC---CHHH
Q 022434          195 LMPMINEAFFTLYTGVA---TKED  215 (297)
Q Consensus       195 ~~~~~~Ea~~l~~~g~~---~~~~  215 (297)
                      ....++|+..+++.-++   ++++
T Consensus       233 ~~~~~~E~~~la~a~G~~~~~~~~  256 (354)
T 1x0v_A          233 IRLGLMEMIAFAKLFCSGPVSSAT  256 (354)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCGGG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccc
Confidence            34567899988876444   6554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.52  E-value=2.9e-13  Score=118.99  Aligned_cols=174  Identities=14%  Similarity=0.204  Sum_probs=117.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ..++|+|||+|.||..+|..|+++|++|++| ++++.++.+.           +.|............++..+++.++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIE-----------ATGLRLETQSFDEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHH-----------HHCEEEECSSCEEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHH-----------hCCeEEEcCCCcEEEeeeeeCCHHHcC
Confidence            3579999999999999999999999999999 9988777652           223210000001123455667777788


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEee-c-----CCCCCCCc--eEE
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMH-F-----MNPPPLMK--LVE  154 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h-~-----~~p~~~~~--~ve  154 (297)
                      ++|+||.|+|...  ..++++++.+.++++++|++.++++.. +.+.+.++  .++++.. +     ..|-....  .-.
T Consensus        86 ~~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~  161 (318)
T 3hwr_A           86 GADLVLFCVKSTD--TQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGE  161 (318)
T ss_dssp             TCSEEEECCCGGG--HHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEccccc--HHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCce
Confidence            9999999999863  467888999999999999999999988 56666664  4444321 1     12221111  011


Q ss_pred             EecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHH
Q 022434          155 VIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILM  196 (297)
Q Consensus       155 i~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~  196 (297)
                      +..+.   .+..+.+.++|...+.++.+..|..+..+..++.
T Consensus       162 ~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~  200 (318)
T 3hwr_A          162 LVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLIL  200 (318)
T ss_dssp             EEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHH
T ss_pred             EEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHH
Confidence            22232   2345677888999999888888877655555443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.51  E-value=3.1e-13  Score=117.65  Aligned_cols=139  Identities=17%  Similarity=0.228  Sum_probs=103.2

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +++|+||| +|.||.++|..|+++|++|++||++++.                                    +..+.++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~   64 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA   64 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence            35899999 9999999999999999999999998641                                    0012256


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCC----CceEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPL----MKLVEVIR  157 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~----~~~vei~~  157 (297)
                      +||+||.|+|...  ...++.++.+.++++++|+..+|...  .+.+.+..  +.++++.||+.+|..    ...+-+++
T Consensus        65 ~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~  140 (298)
T 2pv7_A           65 NADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD  140 (298)
T ss_dssp             TCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred             CCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence            8999999999776  66788889888888887765443322  24455443  468999999765532    12343444


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      +  .+++.++.+.++++.+|.+++++.+
T Consensus       141 ~--~~~~~~~~v~~l~~~~G~~~~~~~~  166 (298)
T 2pv7_A          141 G--RFPERYEWLLEQIQIWGAKIYQTNA  166 (298)
T ss_dssp             E--ECGGGTHHHHHHHHHTTCEEEECCH
T ss_pred             C--CCHHHHHHHHHHHHHcCCEEEECCH
Confidence            4  2678899999999999999888754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.49  E-value=7.7e-13  Score=117.11  Aligned_cols=186  Identities=16%  Similarity=0.111  Sum_probs=112.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|||+|.||++||..|+++|++|++|||++++++.+           .+.|..... ..... ++..++++++++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l-----------~~~g~~~~~-~~~~~-~~~~~~~~~~~~~a   81 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLI-----------NVSHTSPYV-EESKI-TVRATNDLEEIKKE   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHHSCBTTB-TTCCC-CSEEESCGGGCCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH-----------HHhCCcccC-CCCee-eEEEeCCHHHhcCC
Confidence            689999999999999999999999999999999887765           233310000 00001 45667776668899


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH---HHhhhcC--CCCeEEEeecCCCCCC------CceEE
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT---RLASATS--RPCQVIGMHFMNPPPL------MKLVE  154 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~l~~~~~--~~~~~~g~h~~~p~~~------~~~ve  154 (297)
                      |+||.|+|. .. ..+++.++.+   +++++++.+.+++..   .+++.+.  .+...   .....|..      .....
T Consensus        82 DvVil~vk~-~~-~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~---~~~~~P~~~~~~~~g~~~~  153 (335)
T 1z82_A           82 DILVIAIPV-QY-IREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPY---AVLSGPSHAEEVAKKLPTA  153 (335)
T ss_dssp             EEEEECSCG-GG-HHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCE---EEEESSCCHHHHHTTCCEE
T ss_pred             CEEEEECCH-HH-HHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCce---EEEECCccHHHHhCCCceE
Confidence            999999995 33 3445544433   566777666555431   2222211  01111   11112211      11112


Q ss_pred             EecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh---------------------hHH----HHHHHHHHHHHHHHHcC
Q 022434          155 VIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVN----RILMPMINEAFFTLYTG  209 (297)
Q Consensus       155 i~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~---------------------i~n----ri~~~~~~Ea~~l~~~g  209 (297)
                      ++.+. .+   ++.+.++|+..|..+++..|..+.                     +.+    .+....+.|+..+++..
T Consensus       154 ~~~g~-~~---~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~  229 (335)
T 1z82_A          154 VTLAG-EN---SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFF  229 (335)
T ss_dssp             EEEEE-TT---HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEe-hh---HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            22221 12   778889999999888877664321                     112    23346788999999877


Q ss_pred             CCCHHHH
Q 022434          210 VATKEDI  216 (297)
Q Consensus       210 ~~~~~~i  216 (297)
                      +++++.+
T Consensus       230 G~~~~~~  236 (335)
T 1z82_A          230 GADQKTF  236 (335)
T ss_dssp             TCCHHHH
T ss_pred             CCChhhh
Confidence            7787654

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.48  E-value=1e-13  Score=119.98  Aligned_cols=163  Identities=9%  Similarity=0.059  Sum_probs=104.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |+|+|||+|.||..+|..|+++|++|++||+++++++.+           ...+.. .   .....++. .++.+.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~-~---~~~~~~~~-~~~~~~~~~~   64 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETD-G---SIFNESLT-ANDPDFLATS   64 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTT-S---CEEEEEEE-ESCHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCC-C---ceeeeeee-ecCccccCCC
Confidence            379999999999999999999999999999997644321           111100 0   00001111 2344457889


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecC----CCCCCC----ceEEEe
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFM----NPPPLM----KLVEVI  156 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~----~p~~~~----~~vei~  156 (297)
                      |+||.|+|...  ..+++.++.+.++++++|++.++++.. ..+.+.+.  .-+.|.+++    ..|...    +.+.+.
T Consensus        65 d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~~~~g~~~~~~~~~~p~~~~~~~g~~~i~  140 (291)
T 1ks9_A           65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--PLLMGTTTHAARRDGNVIIHVANGITHIG  140 (291)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--CEEEEEECCEEEEETTEEEEEECCCEEEE
T ss_pred             CEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--CeEEEEEeEccEEcCCEEEEecccceEEc
Confidence            99999999875  467788888888888887777777766 34555443  222244432    122110    012222


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh
Q 022434          157 RGADTSDETFRATKALAERFGKTVVCSQDYAGF  189 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~  189 (297)
                      .. .++++.++.+.++|+.+|..+++.+|..+.
T Consensus       141 ~~-~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~  172 (291)
T 1ks9_A          141 PA-RQQDGDYSYLADILQTVLPDVAWHNNIRAE  172 (291)
T ss_dssp             ES-SGGGTTCTHHHHHHHTTSSCEEECTTHHHH
T ss_pred             cC-CCCcchHHHHHHHHHhcCCCCeecHHHHHH
Confidence            21 245667888999999999998888775543

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.48  E-value=7.5e-13  Score=117.00  Aligned_cols=194  Identities=15%  Similarity=0.128  Sum_probs=122.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec--Cccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS--NLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~~~   81 (297)
                      ++|+|||+|.||..+|..|+++||+|++||+  ++++++.+           .+.|....... . ..++..++  ++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~g~-~-~~~~~~~~~~~~~~   67 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSI-----------SAGREHPRLGV-K-LNGVEIFWPEQLEK   67 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHH-----------HTTCCBTTTTB-C-CCSEEEECGGGHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHH-----------HHhCcCcccCc-c-ccceEEecHHhHHH
Confidence            3799999999999999999999999999999  88877654           33332100000 0 13345555  5554


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---c---HHHHhhhcCC--CCeEEEeecCCCCCCC--
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---S---ITRLASATSR--PCQVIGMHFMNPPPLM--  150 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~---~~~l~~~~~~--~~~~~g~h~~~p~~~~--  150 (297)
                       ++++|+||.|+|...  ...++.++.+ ++++++|++.+.++   +   ...+.+.+..  +..........|....  
T Consensus        68 ~~~~~D~vi~~v~~~~--~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~  144 (335)
T 1txg_A           68 CLENAEVVLLGVSTDG--VLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV  144 (335)
T ss_dssp             HHTTCSEEEECSCGGG--HHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH
T ss_pred             HHhcCCEEEEcCChHH--HHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH
Confidence             789999999999874  5677888888 88888887776566   2   2345544432  1100001112232110  


Q ss_pred             --ce-EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh---------------------hH-----HH----HHHH
Q 022434          151 --KL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IV-----NR----ILMP  197 (297)
Q Consensus       151 --~~-vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~---------------------i~-----nr----i~~~  197 (297)
                        .. ..++.+. .+++.++.+.++|+..|..+.+..|..+.                     +.     ++    +...
T Consensus       145 ~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~  223 (335)
T 1txg_A          145 AKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATR  223 (335)
T ss_dssp             HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence              11 1233322 46788999999999999888777764221                     11     22    2345


Q ss_pred             HHHHHHHHHHcCCCCHHHH
Q 022434          198 MINEAFFTLYTGVATKEDI  216 (297)
Q Consensus       198 ~~~Ea~~l~~~g~~~~~~i  216 (297)
                      .++|+..+++.-+++++++
T Consensus       224 ~~~E~~~la~~~G~~~~~~  242 (335)
T 1txg_A          224 AINEMAELIEILGGDRETA  242 (335)
T ss_dssp             HHHHHHHHHHHHTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCcchh
Confidence            6789998888655666543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.47  E-value=1.1e-13  Score=114.83  Aligned_cols=147  Identities=22%  Similarity=0.256  Sum_probs=100.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..++..|++.|++|+++||++++++.+           .+.|             +... +.++ ++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~-----------~~~g-------------~~~~-~~~~~~~   82 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARL-----------FPSA-------------AQVT-FQEEAVS   82 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHH-----------SBTT-------------SEEE-EHHHHTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcC-------------Ccee-cHHHHHh
Confidence            4689999999999999999999999999999998876554           1112             2333 4444 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHh----------hhcCCCCeEEEeecCCCCC-----
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLA----------SATSRPCQVIGMHFMNPPP-----  148 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~----------~~~~~~~~~~g~h~~~p~~-----  148 (297)
                      ++|+||.|+|...  ...++. +.... +++++++.+++.+.+.+.          +.++ ..+++..  +++..     
T Consensus        83 ~~DvVi~av~~~~--~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~--~n~~~~~~~~  155 (215)
T 2vns_A           83 SPEVIFVAVFREH--YSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKA--FNVISAWTLQ  155 (215)
T ss_dssp             SCSEEEECSCGGG--SGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEE--CTTBCHHHHH
T ss_pred             CCCEEEECCChHH--HHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEec--cccccHhHhc
Confidence            9999999999643  334443 55555 678888888888765442          3333 2355432  12211     


Q ss_pred             --C--CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          149 --L--MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       149 --~--~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                        .  .+..-++.+  ++++.++.++++++.+|.+++++++
T Consensus       156 ~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          156 AGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             TCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             ccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence              0  111123333  5899999999999999999999876

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.47  E-value=1.2e-13  Score=133.62  Aligned_cols=89  Identities=25%  Similarity=0.390  Sum_probs=83.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcH
Q 022434          187 AGFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP  262 (297)
Q Consensus       187 ~g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~  262 (297)
                      .+.+.+|++.+++||+++++++|++ +++|||.+|.+|+|||.   |||+|+|.+|++.+++.++.+++.+++ +|+|++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~  702 (725)
T 2wtb_A          624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGE-FFKPCA  702 (725)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCG-GGCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCC-CCCCCH
Confidence            3579999999999999999999998 79999999999999999   999999999999999999999999996 799999


Q ss_pred             HHHHHHHcCCCCcccCCcccc
Q 022434          263 LLVQYVDAGRLGKKRGIGVFD  283 (297)
Q Consensus       263 ~l~~~~~~g~~G~~~g~Gfy~  283 (297)
                      +|.+|+++|       ++||.
T Consensus       703 ~l~~~~~~g-------~~f~~  716 (725)
T 2wtb_A          703 FLAERGSKG-------VLLSA  716 (725)
T ss_dssp             HHHHHHHHT-------CCSSS
T ss_pred             HHHHHHHcC-------CCccc
Confidence            999999876       57985

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.46  E-value=1.6e-13  Score=132.58  Aligned_cols=87  Identities=26%  Similarity=0.471  Sum_probs=81.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcH
Q 022434          187 AGFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP  262 (297)
Q Consensus       187 ~g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~  262 (297)
                      .+.+.+|++.+++||+++++++|++ +++|||.+|.+|+|||.   |||+|+|.+|++.+++.++.+ +.+++ +|+|++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~-~~~p~~  701 (715)
T 1wdk_A          624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGA-LYHPTA  701 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCG-GGCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCC-CCCCCH
Confidence            3579999999999999999999998 79999999999999999   999999999999999999999 88885 899999


Q ss_pred             HHHHHHHcCCCCcccCCccc
Q 022434          263 LLVQYVDAGRLGKKRGIGVF  282 (297)
Q Consensus       263 ~l~~~~~~g~~G~~~g~Gfy  282 (297)
                      +|.+|+++|       ++||
T Consensus       702 ~l~~~~~~g-------~~f~  714 (715)
T 1wdk_A          702 KLREMAKNG-------QSFF  714 (715)
T ss_dssp             HHHHHHHTT-------CCSC
T ss_pred             HHHHHHHcC-------CCCC
Confidence            999999887       4787

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.45  E-value=6.2e-13  Score=117.10  Aligned_cols=122  Identities=20%  Similarity=0.299  Sum_probs=88.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+....+            ....++..+++++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI------------GSPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH------------TCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc------------CCCCEEEECCCHHHHCC
Confidence            589999999999999999999999 99999999988876444444333211            12356778788877999


Q ss_pred             CcEEEEec--cc------------cHHHHHHHHHHHHhhcCCCeEE--EecCCCCcHHHHhhhcC--CCCeEEEe
Q 022434           85 ADIIVEAI--VE------------SEDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATS--RPCQVIGM  141 (297)
Q Consensus        85 aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~--~~~~~~g~  141 (297)
                      ||+||+++  |.            +..+++++++++.+++ +++++  +||++.+. ..++....  .|.|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  54            4567889999999998 55554  46655543 33333222  34566654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.43  E-value=3.8e-13  Score=118.61  Aligned_cols=125  Identities=16%  Similarity=0.256  Sum_probs=88.5

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-   80 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   80 (297)
                      ...+||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+....+   +         ...++..++|++ 
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~e   74 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEA   74 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHH
Confidence            345799999999999999999999998 99999999988876544444433211   1         235677788988 


Q ss_pred             ccCCCcEEEEec--cccH-----------------HHHHHHHHHHHhhcCCCeEE--EecCCCCcHHHHhhhc-C-CCCe
Q 022434           81 DLHSADIIVEAI--VESE-----------------DVKKKLFSELDKITKASAIL--ASNTSSISITRLASAT-S-RPCQ  137 (297)
Q Consensus        81 ~~~~aD~Vi~~v--~e~~-----------------~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~-~-~~~~  137 (297)
                      ++++||+||+++  |++.                 .+++++++++.+++ +++++  .||++++. ..++... . .|.|
T Consensus        75 a~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~r  152 (331)
T 1pzg_A           75 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNM  152 (331)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGG
T ss_pred             HhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhc
Confidence            599999999998  6432                 35788889999988 56655  45555443 3333322 2 3456


Q ss_pred             EEEe
Q 022434          138 VIGM  141 (297)
Q Consensus       138 ~~g~  141 (297)
                      ++|+
T Consensus       153 viG~  156 (331)
T 1pzg_A          153 ICGM  156 (331)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            6664

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.43  E-value=8.3e-13  Score=116.90  Aligned_cols=169  Identities=15%  Similarity=0.222  Sum_probs=108.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++||+|||+|.||..+|..|+++|++|++|+|+ +..+.+           .+.|............++..+++++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQAL-----------QTAGLRLTEDGATHTLPVRATHDAAALGE   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHH-----------HHTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHH-----------HHCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence            479999999999999999999999999999996 444443           33343110000011123455667777889


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-------------------H-HHHhhhcCCCCeEE-Eeec
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-------------------I-TRLASATSRPCQVI-GMHF  143 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-------------------~-~~l~~~~~~~~~~~-g~h~  143 (297)
                      +|+||.|+|.. . ..+++.++.+.++++++|++.+.+++                   . +.+.+.++. .+++ ++.+
T Consensus        71 ~D~Vilavk~~-~-~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~~v~~gv~~  147 (335)
T 3ghy_A           71 QDVVIVAVKAP-A-LESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-RHVLGCVVH  147 (335)
T ss_dssp             CSEEEECCCHH-H-HHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-GGEEEEEEC
T ss_pred             CCEEEEeCCch-h-HHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-ccEEEEEEE
Confidence            99999999874 3 44777888888888999888888853                   2 245555532 3433 3322


Q ss_pred             CC----CCCCC-----ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434          144 MN----PPPLM-----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       144 ~~----p~~~~-----~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g  188 (297)
                      ..    .|...     ..+.+-.....+.+..+.+.++|+..|..+.+..|..+
T Consensus       148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  201 (335)
T 3ghy_A          148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR  201 (335)
T ss_dssp             CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred             EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence            21    12111     01222222233456778888999999988887777654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.43  E-value=9.5e-13  Score=115.60  Aligned_cols=124  Identities=20%  Similarity=0.262  Sum_probs=87.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      +++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+++.+...            ....++..+++++++
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al   70 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMA------------YSNCKVSGSNTYDDL   70 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHH------------TCCCCEEEECCGGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhc------------CCCcEEEECCCHHHh
Confidence            45799999999999999999999998 99999999988876544444433211            123456777888779


Q ss_pred             CCCcEEEEec--ccc-----------------HHHHHHHHHHHHhhcCCCeEE--EecCCCCcHHHHhhhcC--CCCeEE
Q 022434           83 HSADIIVEAI--VES-----------------EDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATS--RPCQVI  139 (297)
Q Consensus        83 ~~aD~Vi~~v--~e~-----------------~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~--~~~~~~  139 (297)
                      ++||+||+++  |++                 ..+++++++++.+++ +++++  +||++++. ..++....  .|.|++
T Consensus        71 ~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rvi  148 (322)
T 1t2d_A           71 AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKII  148 (322)
T ss_dssp             TTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEE
Confidence            9999999998  532                 246888999999998 56644  45655443 33333322  345555


Q ss_pred             Ee
Q 022434          140 GM  141 (297)
Q Consensus       140 g~  141 (297)
                      |+
T Consensus       149 G~  150 (322)
T 1t2d_A          149 GL  150 (322)
T ss_dssp             EC
T ss_pred             ec
Confidence            54

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.40  E-value=8.8e-12  Score=109.20  Aligned_cols=171  Identities=12%  Similarity=0.119  Sum_probs=111.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-VGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||+.+|..|+++|++|++|+|++  .+..           .+.|..... ..+.....+..+++.++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i-----------~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAI-----------AGNGLKVFSINGDFTLPHVKGYRAPEEIGP   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHH-----------HHTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHH-----------HhCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence            589999999999999999999999999999986  2333           233321000 00000113345566666789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEE-eec-----CCCCC---CCc-eE
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIG-MHF-----MNPPP---LMK-LV  153 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g-~h~-----~~p~~---~~~-~v  153 (297)
                      +|+||.+++...  ..++++++.+.++++++|++...++.. +.+.+.++. .++++ +-+     ..|-.   ..+ .+
T Consensus        70 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~  146 (312)
T 3hn2_A           70 MDLVLVGLKTFA--NSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI  146 (312)
T ss_dssp             CSEEEECCCGGG--GGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred             CCEEEEecCCCC--cHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence            999999998654  347888899999999999999999975 567666543 23332 221     11211   111 12


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHH
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVN  192 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~n  192 (297)
                      .+-.....+.+..+.+.++|...|....+..|..+..+.
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~  185 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWE  185 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHH
Confidence            222223345667788889999999888877776554333

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.36  E-value=1.2e-11  Score=108.77  Aligned_cols=169  Identities=17%  Similarity=0.158  Sum_probs=109.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCh-hhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ-LSQ-AVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||+.+|..|+++|++|++|+|++.  +.+           .+.|. +.. ...+.....+..+++.+++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i-----------~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~   69 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETV-----------KAKGIRIRSATLGDYTFRPAAVVRSAAELE   69 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHH-----------HHHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHH-----------HhCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence            6899999999999999999999999999999862  333           22231 000 00000111344567777754


Q ss_pred             -CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecC-----CCCCCC---c-e
Q 022434           84 -SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFM-----NPPPLM---K-L  152 (297)
Q Consensus        84 -~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~-----~p~~~~---~-~  152 (297)
                       ++|+||.|+|...  ..++++++.+.++++++|++.+.++.. +.+.+.++...-+.|.-++     .|-.+.   + .
T Consensus        70 ~~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~~~  147 (320)
T 3i83_A           70 TKPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISGLAFIGVTRTAPGEIWHQAYGR  147 (320)
T ss_dssp             SCCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEEEEEeceEEcCCCEEEECCCCE
Confidence             8999999998765  236778888888889988888888875 6677766543222333222     121111   0 1


Q ss_pred             EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh
Q 022434          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF  189 (297)
Q Consensus       153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~  189 (297)
                      +.+-.....+.+..+.+.++|...|.++.+..|..+.
T Consensus       148 ~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~  184 (320)
T 3i83_A          148 LMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTA  184 (320)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHH
T ss_pred             EEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHH
Confidence            2222212344567788889999999888887776553

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.31  E-value=7e-12  Score=108.98  Aligned_cols=119  Identities=16%  Similarity=0.215  Sum_probs=81.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +++||+|||+|.||.++|..++..|+  +|+++|++++....+.+. .       ..          ...++..++++++
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl-~-------~~----------~~~~i~~t~d~~~   74 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDL-E-------IF----------NLPNVEISKDLSA   74 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHH-H-------HH----------TCTTEEEESCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHH-h-------hh----------cCCCeEEeCCHHH
Confidence            35799999999999999999999999  999999998622222111 1       10          1125677788888


Q ss_pred             cCCCcEEEEec-------------cccHHHHHHHHHHHHhhcCCCeEE--EecCCCCcHHHHhhhcCC-CCeEEEe
Q 022434           82 LHSADIIVEAI-------------VESEDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATSR-PCQVIGM  141 (297)
Q Consensus        82 ~~~aD~Vi~~v-------------~e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~~-~~~~~g~  141 (297)
                      +++||+||+++             .++..+++++++++.+++ +++++  +||++.+-...+.+.... |.|++|+
T Consensus        75 l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           75 SAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             GTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            99999999997             888899999999999998 55654  455444222223232222 3566665

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.97  E-value=2.1e-13  Score=111.87  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=95.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-ccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   84 (297)
                      ++|+|||+|.||..+|..|.+.|++|++|||+++ .+.+           .+.|.             ... +.+ .+++
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g~-------------~~~-~~~~~~~~   73 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSL-----------LPRGA-------------EVL-CYSEAASR   73 (201)
Confidence            5899999999999999999999999999999876 3222           11121             223 343 4788


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--------HHHhhhcCCCCeEEEeecCCCCCCCc-eE--
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--------TRLASATSRPCQVIGMHFMNPPPLMK-LV--  153 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--------~~l~~~~~~~~~~~g~h~~~p~~~~~-~v--  153 (297)
                      +|+||.++|.. .+ ..++ ++... .++++|++.+++++.        +.+.+.++. .+++...+..|..... ..  
T Consensus        74 aDvVilav~~~-~~-~~v~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~  148 (201)
T 2yjz_A           74 SDVIVLAVHRE-HY-DFLA-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLD  148 (201)
Confidence            99999999975 33 3344 44433 356777766666652        344444332 2343333333332221 11  


Q ss_pred             ----EEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          154 ----EVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       154 ----ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                          .++.+  .+++.++.++++|+.+|.+++++++
T Consensus       149 g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          149 ASRQVFVCG--NDSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence                23444  4678899999999999999998875

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.30  E-value=3.2e-11  Score=105.87  Aligned_cols=141  Identities=21%  Similarity=0.310  Sum_probs=90.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||.++|..|+.+|+  +|+++|+++++++.....+.+...    ..         ...++.. ++.++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~----~~---------~~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP----FT---------RRANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG----GS---------CCCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh----hc---------CCcEEEe-CCHHHhC
Confidence            489999999999999999999999  999999999877765433332211    00         1123344 4666789


Q ss_pred             CCcEEEEeccccH--------------HHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhc-C-CCCeEEEeecCCC
Q 022434           84 SADIIVEAIVESE--------------DVKKKLFSELDKITKASAILASNTSSISI-TRLASAT-S-RPCQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~-~-~~~~~~g~h~~~p  146 (297)
                      +||+||++++...              .+++++++++.++++ +++++..|.+... +.+.... . .+.|++|+     
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~-----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS-----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC-----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHHHHHHHHHhCCChhhEEee-----
Confidence            9999999998632              356788888888864 5544323333332 3333222 2 24555554     


Q ss_pred             CCCCceEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434          147 PPLMKLVEVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       147 ~~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~  179 (297)
                                   .|.-+.......+.+.+|..
T Consensus       141 -------------~t~ld~~r~~~~la~~lgv~  160 (319)
T 1a5z_A          141 -------------GTVLDTARLRTLIAQHCGFS  160 (319)
T ss_dssp             -------------TTHHHHHHHHHHHHHHHTCC
T ss_pred             -------------CccHHHHHHHHHHHHHhCcC
Confidence                         25555555555666677753

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=99.27  E-value=3.1e-11  Score=105.44  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=73.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.+...            ......++..+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence            589999999999999999999997 999999998877643222211110            0112345677788877999


Q ss_pred             CcEEEEec--------------cccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           85 ADIIVEAI--------------VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        85 aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ||+||+++              .++..+++++++++.+.+ ++++++
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi  116 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVII  116 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEE
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence            99999997              334567778888898887 566553

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.25  E-value=2.8e-11  Score=109.59  Aligned_cols=153  Identities=15%  Similarity=0.157  Sum_probs=107.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD------GLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ++|+|||+|.||.++|..|.++      |++|++.+++.+ ..+.+           .+.|....       .  ....+
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~-------d--~ta~s  114 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE-------S--GTLGD  114 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT-------T--TCEEE
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe-------c--CCCCC
Confidence            7999999999999999999999      999987776543 23333           34454210       0  01133


Q ss_pred             ccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhh---hcCCCCeEEEeecCCCCCC-----
Q 022434           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLAS---ATSRPCQVIGMHFMNPPPL-----  149 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~---~~~~~~~~~g~h~~~p~~~-----  149 (297)
                      .++ +++||+||.++|....  ..++.++.+.++++++| +-..++.+..+.+   .++...+++.++|..|.+.     
T Consensus       115 ~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y  191 (525)
T 3fr7_A          115 IWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLY  191 (525)
T ss_dssp             HHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHH
T ss_pred             HHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHH
Confidence            444 8899999999997654  35788899999999985 5778888776664   3333457899999888753     


Q ss_pred             --C------ceE-EEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 022434          150 --M------KLV-EVIRGADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       150 --~------~~v-ei~~~~~~~~~~~~~~~~ll~~lg~~~i  181 (297)
                        .      +.. -+..+...+.+..+.+..+++.+|...+
T Consensus       192 ~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          192 VQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             hcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence              1      111 2333334566889999999999998643

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=99.23  E-value=1.7e-10  Score=100.65  Aligned_cols=104  Identities=23%  Similarity=0.244  Sum_probs=72.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD--PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |+.+.+||+|||+|.||.++|..++..|+ +|+++|++  +++++.....+.+..            .......++..++
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~   71 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTS   71 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEES
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcC
Confidence            55556899999999999999999999999 99999999  554443322222211            0111234567778


Q ss_pred             CccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           78 NLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++++++||+||++...              +..+.+++...+.++++ +++++
T Consensus        72 d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vl  124 (315)
T 3tl2_A           72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIV  124 (315)
T ss_dssp             CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred             CHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            88889999999999732              22345566667777764 55544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=99.22  E-value=1e-10  Score=101.92  Aligned_cols=120  Identities=23%  Similarity=0.320  Sum_probs=78.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||.++|..|+..|+  +|+++|+++++++.....        ...+.  +  . ....++.. ++.++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~--------l~~~~--~--~-~~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAED--------IAHAA--P--V-SHGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HTTSC--C--T-TSCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHh--------hhhhh--h--h-cCCeEEEE-CCHHHhC
Confidence            489999999999999999999999  999999998766532111        11111  0  0 01123333 5677799


Q ss_pred             CCcEEEEecc--c------------cHHHHHHHHHHHHhhcCCCeEEE--ecCCCCcHHHHhhhcCCCCeEEEe
Q 022434           84 SADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILA--SNTSSISITRLASATSRPCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~~~~~~~g~  141 (297)
                      +||+||++++  .            +..+++++++++.+++ ++++++  ||++.+....+.+.. .|.|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            9999999983  2            3456788888899886 555543  454443333344433 45566554

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.19  E-value=2e-11  Score=108.24  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=82.8

Q ss_pred             CcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|.||..+|..+. ..|++|++||+++++.+..           .+.|.             ...+++++ +
T Consensus       163 g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~-----------~~~g~-------------~~~~~l~ell  218 (348)
T 2w2k_A          163 GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE-----------KALGA-------------ERVDSLEELA  218 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-----------HHHTC-------------EECSSHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH-----------hhcCc-------------EEeCCHHHHh
Confidence            368999999999999999999 9999999999987654433           11232             34445655 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCCC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMNP  146 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~p  146 (297)
                      ++||+|+.++|...+.+..+.+++.+.++++++++ |+++.   ....+.+.+... ....++++|.+
T Consensus       219 ~~aDvVil~vp~~~~t~~li~~~~l~~mk~gaili-n~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          219 RRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIV-NTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             ccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEE-ECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            89999999999876544433345556788888887 45443   335677766542 22367888874

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.17  E-value=2.6e-10  Score=99.68  Aligned_cols=121  Identities=15%  Similarity=0.265  Sum_probs=78.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCcccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      +||+|||+|.||.++|..|+.+|  ++|+++|+++++++.....+.+...       .       ....+.. +++++++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~-------~-------~~~~~~~~~~d~~~~   67 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA-------N-------LEAHGNIVINDWAAL   67 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-------G-------SSSCCEEEESCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh-------h-------cCCCeEEEeCCHHHh
Confidence            58999999999999999999999  7999999999887665433221110       0       0012233 4667669


Q ss_pred             CCCcEEEEeccccH------------------HHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhc--CCCCeEEEe
Q 022434           83 HSADIIVEAIVESE------------------DVKKKLFSELDKITKASAILASNTSSISI-TRLASAT--SRPCQVIGM  141 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~------------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~--~~~~~~~g~  141 (297)
                      ++||+||.+++...                  .+.+++.+++.++++ +++++..|..... ..+....  -.+.+++|+
T Consensus        68 ~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig~  146 (309)
T 1hyh_A           68 ADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIGT  146 (309)
T ss_dssp             TTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHhcCCCHHHEeec
Confidence            99999999998744                  235677788888775 5554433333333 2333221  123456655

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.17  E-value=2.1e-11  Score=107.51  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=81.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..|...|++|++||+++++.+..           .+.|             +... ++++ ++
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~-~l~e~l~  209 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-----------AEFQ-------------AEFV-STPELAA  209 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-----------HTTT-------------CEEC-CHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-----------HhcC-------------ceeC-CHHHHHh
Confidence            3689999999999999999999999999999987644332           1122             1333 5555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCC-CCeEEEeecCCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSR-PCQVIGMHFMNPP  147 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~-~~~~~g~h~~~p~  147 (297)
                      +||+|+.++|...+.+..+.+++.+.++++++++ |+++.   ....+.+.+.. .....++++|.|.
T Consensus       210 ~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          210 QSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI-NISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             hCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            9999999999876543333344556778888876 44443   33566665532 2345778888754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.16  E-value=1.8e-10  Score=102.56  Aligned_cols=107  Identities=18%  Similarity=0.235  Sum_probs=74.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhh-cccCCCc-EEecC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVG-TDAPRRL-RCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i-~~~~~   78 (297)
                      ||+ .++|+|||+|.||..+|..|+++|++|++||+++++++.+.           +.+.+.-... .....++ ..+++
T Consensus         1 mm~-~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~   68 (359)
T 1bg6_A            1 MIE-SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-----------DRGAIIAEGPGLAGTAHPDLLTSD   68 (359)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HHTSEEEESSSCCEEECCSEEESC
T ss_pred             CCC-cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------hcCCeEEeccccccccccceecCC
Confidence            544 46999999999999999999999999999999998876652           2211100000 0000122 24566


Q ss_pred             ccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +++ ++++|+||.|+|....  .+++.++.+.++++++|++..+
T Consensus        69 ~~~~~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~~~  110 (359)
T 1bg6_A           69 IGLAVKDADVILIVVPAIHH--ASIAANIASYISEGQLIILNPG  110 (359)
T ss_dssp             HHHHHTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEESSC
T ss_pred             HHHHHhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEcCC
Confidence            665 7899999999998764  5778888888888887665533

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.14  E-value=8.7e-11  Score=106.52  Aligned_cols=106  Identities=17%  Similarity=0.316  Sum_probs=76.5

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CCCcEEEEe---CCHHHHHHHHHHHHHHHHHHHHcCCCC------hhhhcccCCCcE-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVM-DGLDVWLVD---TDPDALVRATKSISSSIQKFVSKGQLS------QAVGTDAPRRLR-   74 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~-~G~~V~~~d---~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~i~-   74 (297)
                      ++|+|||+|.||..+|..|++ +|++|++||   +++++++.+           .+.+.+.      ..+......++. 
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~   71 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKA-----------LGADELTVIVNEKDGTQTEVKSRPKV   71 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHH-----------HTTSCEEEEEECSSSCEEEEEECCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHH-----------HhhccceeeeecCCCccceeeccceE
Confidence            689999999999999999988 599999999   877766553           2222100      000001112333 


Q ss_pred             EecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           75 CTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        75 ~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++++++ ++++|+||+|+|...  ..++++++.+.++++++|++++++..
T Consensus        72 ~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           72 ITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred             EeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence            5667765 789999999999876  56888999999988999988665555

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=99.13  E-value=5.3e-10  Score=97.69  Aligned_cols=100  Identities=16%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+...       +      ....++..++++++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~-------~------~~~~~i~~t~d~~~   86 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL-------F------LHTAKIVSGKDYSV   86 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG-------G------SCCSEEEEESSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh-------c------ccCCeEEEcCCHHH
Confidence            45799999999999999999999997  999999999877654333332210       0      12345667888999


Q ss_pred             cCCCcEEEEec--------------cccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 LHSADIIVEAI--------------VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~~~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++||+||.+.              ..+..+++++..++.+++ ++++++
T Consensus        87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~il  135 (330)
T 3ldh_A           87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKE  135 (330)
T ss_dssp             CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEE
Confidence            99999999774              344567778888898885 455444

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=99.12  E-value=3.6e-10  Score=98.51  Aligned_cols=97  Identities=18%  Similarity=0.382  Sum_probs=70.8

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+....   .+         ...++..+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE---LG---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH---HT---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh---cC---------CCeEEEECCCHHHhCCC
Confidence            69999999999999999999898 7999999988776433232221110   11         12345666788789999


Q ss_pred             cEEEEe--------------ccccHHHHHHHHHHHHhhcCCCeEE
Q 022434           86 DIIVEA--------------IVESEDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        86 D~Vi~~--------------v~e~~~~k~~~~~~l~~~~~~~~ii  116 (297)
                      |+||++              +..+..+++++.+++.+++ +++++
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~i  112 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIV  112 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEE
Confidence            999999              3445567888888899887 55533

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.09  E-value=4.3e-11  Score=105.66  Aligned_cols=115  Identities=20%  Similarity=0.242  Sum_probs=80.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..+|..|...|++|++||+++++ +..           .+.|.             .. .++++ ++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g~-------------~~-~~l~~~l~  203 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE-----------RELNA-------------EF-KPLEDLLR  203 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-----------HHHCC-------------EE-CCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH-----------hhcCc-------------cc-CCHHHHHh
Confidence            368999999999999999999999999999999875 322           12232             23 35555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCC-CCeEEEeecCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSR-PCQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~-~~~~~g~h~~~p  146 (297)
                      +||+|+.++|...+.+..+.+++.+.++++++++ |++...+   ..+.+.+.. +....+++++++
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~  269 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILI-NIARGKVVDTNALVKALKEGWIAGAGLDVFEE  269 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence            9999999999887543333345556778888886 4444332   356665532 223477888873

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.09  E-value=2e-11  Score=107.41  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=78.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++..+                |             .....++++ ++
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~  214 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELAS  214 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHh
Confidence            36899999999999999999999999999999875311                1             134456666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+..+-++..+.++++++++..+.+...  ..+.+.+..+ .+..++++|.
T Consensus       215 ~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          215 NSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             TCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             cCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            999999999987553332223344566788888644433322  4666666432 4567888887

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.08  E-value=6.8e-11  Score=104.25  Aligned_cols=113  Identities=17%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++. +..           .+.|.             .. .++++ ++
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g~-------------~~-~~l~e~l~  199 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVE-----------KELKA-------------RY-MDIDELLE  199 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHH-----------HHHTE-------------EE-CCHHHHHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhh-----------hhcCc-------------ee-cCHHHHHh
Confidence            368999999999999999999999999999999875 322           11221             23 25555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+..+.+++.+.++++ +++ |++.-.+   ..+.+.+... ....|+++|.
T Consensus       200 ~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili-n~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          200 KSDIVILALPLTRDTYHIINEERVKKLEGK-YLV-NIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             HCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE-ECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             hCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE-ECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            999999999988554433333444567777 665 5554433   3456665432 3458899987

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=99.08  E-value=8.8e-10  Score=96.28  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=69.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||.++|..|+..  |++|+++|+++++++.....+.+...            ......++..++++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHC
Confidence            4899999999999999999985  79999999999877643211111110            001124566778888899


Q ss_pred             CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||+||++++..              ..+.+.+.+.+.++++ +++++
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~vi  115 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIII  115 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEE
Confidence            999999999642              1344566677777764 45433

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=99.07  E-value=1.4e-09  Score=95.12  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=70.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.+.... .  +         ...++..++++++++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~v~~t~d~~a~~   74 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPV-D--G---------FDAKFTGANDYAAIE   74 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHH-H--T---------CCCCEEEESSGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhh-c--C---------CCCEEEEeCCHHHHC
Confidence            5699999999999999999999999 9999999998876443333322111 1  0         123456678888899


Q ss_pred             CCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||+||.+...              +..+.+++...+.+++ ++++++
T Consensus        75 ~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~ii  121 (324)
T 3gvi_A           75 GADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVI  121 (324)
T ss_dssp             TCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             CCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEE
Confidence            99999998632              2234555666677877 556544

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=99.06  E-value=5.6e-10  Score=97.74  Aligned_cols=102  Identities=13%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             CCC-CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEE-KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~-~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.+ +++||+|||+|.||.++|..++..|.  +|+++|+++++++.....+.+       .....     ....++. ++
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~-------~~~~~-----~~~~~i~-~~   67 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH-------GKVFA-----PKPVDIW-HG   67 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH-------HTTSS-----SSCCEEE-EC
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHH-------Hhhhc-----CCCeEEE-cC
Confidence            643 45799999999999999999998885  899999998755532222211       10000     0012222 34


Q ss_pred             CccccCCCcEEEEecc--------------ccHHHHHHHHHHHHhhcCCCeEE
Q 022434           78 NLKDLHSADIIVEAIV--------------ESEDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~--------------e~~~~k~~~~~~l~~~~~~~~ii  116 (297)
                      +.+++++||+||++.+              .+..+++++.+++.++++ ++++
T Consensus        68 ~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~~  119 (316)
T 1ldn_A           68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLF  119 (316)
T ss_dssp             CGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEE
T ss_pred             cHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC-CCEE
Confidence            5667999999999943              344678888888999875 5533

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=99.06  E-value=9.3e-10  Score=96.28  Aligned_cols=100  Identities=20%  Similarity=0.294  Sum_probs=69.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+++....            .....++..++++++++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~------------~~~~~~v~~t~d~~a~~   72 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPI------------EGVDFKVRGTNDYKDLE   72 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCCEEEESCGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhh------------cCCCcEEEEcCCHHHHC
Confidence            5799999999999999999999998 9999999998765432222211100            00123455567888899


Q ss_pred             CCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||+||.+...              +..+.+++...+.+++ ++++++
T Consensus        73 ~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vi  119 (321)
T 3p7m_A           73 NSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVI  119 (321)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             CCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEE
Confidence            99999998632              2344556667788887 455544

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.05  E-value=1.6e-09  Score=94.98  Aligned_cols=107  Identities=19%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ++||+|||+|.||..+|..|+.+|+  +|+++|+++++++.....+        +.+..    .. ...++..+++.+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~--------~~~~~----~~-~~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDM--------QHGSS----FY-PTVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------HHTGG----GS-TTCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHH--------Hhhhh----hc-CCeEEEeCCCHHHh
Confidence            4799999999999999999999999  9999999987665211111        11110    00 01234445567778


Q ss_pred             CCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++||+||.+++.              +..+.++++.++.++ .++++|++.+.++..
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~  129 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI  129 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence            999999999932              234556778888876 567777666666655

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.05  E-value=1.1e-09  Score=95.62  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=73.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|||+|.||+.+|..|+ +|++|++|+|++++++.+           .+.|.............+..  +.+....+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l-----------~~~G~~~~~~~~~~~~~~~~--~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAI-----------QSEGIRLYKGGEEFRADCSA--DTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHH-----------HHHCEEEEETTEEEEECCEE--ESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHH-----------HhCCceEecCCCeecccccc--cccccCCC
Confidence            68999999999999999999 999999999999877665           23332110000000011111  12336789


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH-HHhhhcC
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT-RLASATS  133 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~  133 (297)
                      |+||.|++...  ..+++.++.+. .+++ |++...++... .+.+.++
T Consensus        69 D~vilavK~~~--~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~  113 (307)
T 3ego_A           69 DLLVVTVKQHQ--LQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHV  113 (307)
T ss_dssp             SEEEECCCGGG--HHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCC
T ss_pred             CEEEEEeCHHH--HHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCC
Confidence            99999998643  44666777664 5677 77888999885 5555544

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.04  E-value=8.9e-11  Score=101.90  Aligned_cols=163  Identities=10%  Similarity=0.101  Sum_probs=103.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc-CC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL-HS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~   84 (297)
                      +||+|||+|.||..+|..|+++|++|++|+|+++.++..           ...|.        ...++. .++.+++ +.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~--------~~~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHA--------PAQDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTS--------CCEEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCe--------ecccee-cCchHhcCCC
Confidence            589999999999999999999999999999996533210           01111        001111 2233444 78


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEe-e-----cCCCCCCC-ceEEEec
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGM-H-----FMNPPPLM-KLVEVIR  157 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~-h-----~~~p~~~~-~~vei~~  157 (297)
                      +|+||.|++...  ..++++++.+.++++++|++...++...+.   ++. .++++. .     ...|-.+. ....+..
T Consensus        63 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVKTHQ--LDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSCGGG--HHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCCccC--HHHHHHHHHHhhCCCCEEEEeccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            999999998654  456788888888889999888888877544   322 233321 1     11221110 0011221


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHH
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMP  197 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~  197 (297)
                         ++.+..+.+.++|..-|.+..+..|..+..+..++..
T Consensus       137 ---~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N  173 (294)
T 3g17_A          137 ---QDNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVN  173 (294)
T ss_dssp             ---ECSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred             ---CccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHH
Confidence               2345667777888888888888788766555554443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.98  E-value=6e-09  Score=89.96  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=68.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.||.++|..|+..|+  +|++||+++++++.....+.+....   ..         ...++..++|.++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG---ID---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT---TT---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhh---cC---------CCCEEEEeCCHHHhC
Confidence            489999999999999999999998  9999999998866332222221110   00         123456667777799


Q ss_pred             CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +||+||.+...+              ..+.+.+...+.+++ ++++++.-|
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs  118 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence            999999987322              123344555677775 456555334

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.97  E-value=7.6e-09  Score=94.87  Aligned_cols=77  Identities=22%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             CcEEEEECCChhH--HHHHHHHHHC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQMG--SGIAQLGVMD----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~mG--~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|.||  .++|..|+..    |++|++||+++++++.......    .+.....        ...+++.++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~----~~l~~~~--------~~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAK----KYVEEVG--------ADLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHH----HHHHHTT--------CCCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHH----HHhccCC--------CCcEEEEECC
Confidence            4699999999985  5557777754    8999999999998877544332    2222211        2356778888


Q ss_pred             c-cccCCCcEEEEecc
Q 022434           79 L-KDLHSADIIVEAIV   93 (297)
Q Consensus        79 ~-~~~~~aD~Vi~~v~   93 (297)
                      + +++++||+||++++
T Consensus        71 ~~eal~dAD~VIiaag   86 (480)
T 1obb_A           71 LDDVIIDADFVINTAM   86 (480)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence            8 45999999999995

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.97  E-value=6.8e-09  Score=95.22  Aligned_cols=78  Identities=17%  Similarity=0.188  Sum_probs=56.7

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|.. |.++|..|+..     +++|++||+++++++......+..+.   ..+         ...++..++|
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~---~~~---------~~~~I~~t~D   95 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIR---EKA---------PDIEFAATTD   95 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHH---HHC---------TTSEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhc---cCC---------CCCEEEEECC
Confidence            469999999998 66688888887     67999999999988775332221111   111         1245677788


Q ss_pred             c-cccCCCcEEEEeccc
Q 022434           79 L-KDLHSADIIVEAIVE   94 (297)
Q Consensus        79 ~-~~~~~aD~Vi~~v~e   94 (297)
                      + +++++||+||.+++.
T Consensus        96 ~~eal~~AD~VViaag~  112 (472)
T 1u8x_X           96 PEEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             HHHHHSSCSEEEECCCT
T ss_pred             HHHHHcCCCEEEEcCCC
Confidence            7 458999999999976

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.96  E-value=2.5e-09  Score=93.65  Aligned_cols=115  Identities=15%  Similarity=0.168  Sum_probs=76.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|.||..+|..+...|++|++||+ +++.. .+           .+.|.             ...+++++ +
T Consensus       146 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~~g~-------------~~~~~l~ell  200 (320)
T 1gdh_A          146 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DE-----------ASYQA-------------TFHDSLDSLL  200 (320)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HH-----------HHHTC-------------EECSSHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hh-----------hhcCc-------------EEcCCHHHHH
Confidence            36899999999999999999999999999999 87642 22           12232             23445655 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC--CcHHHHhhhcCCC-CeEEEeecC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      ++||+|+.++|...+...-+-++.-+.++++++++..+++  +....+.+.+... ..-.++.++
T Consensus       201 ~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~  265 (320)
T 1gdh_A          201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVF  265 (320)
T ss_dssp             HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence            8999999999976543322223444667888888744444  2334566655322 223445555

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.96  E-value=3.5e-09  Score=92.71  Aligned_cols=105  Identities=19%  Similarity=0.319  Sum_probs=69.7

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE-Eec
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR-CTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~   77 (297)
                      |+...+||+|||+|.||.++|..|+..|+  +|+++|+++++++.....+.+... +             ....+. .++
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~-~-------------~~~~v~i~~~   66 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA-F-------------APQPVKTSYG   66 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG-G-------------SSSCCEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc-c-------------ccCCeEEEeC
Confidence            76778899999999999999999999997  899999999877654333222110 0             001122 355


Q ss_pred             CccccCCCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           78 NLKDLHSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +++++++||+||.+....              ..+.+++...+.+.++ +++++.-|
T Consensus        67 ~~~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvvt  122 (326)
T 3pqe_A           67 TYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVAT  122 (326)
T ss_dssp             CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECS
T ss_pred             cHHHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEcC
Confidence            677899999999987421              1233445556777665 55554333

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.96  E-value=2e-10  Score=98.93  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++..+.                             ....+++++ ++
T Consensus       122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~  172 (290)
T 3gvx_A          122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFR  172 (290)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHH
T ss_pred             cchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhh
Confidence            368999999999999999999999999999998653210                             134556666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCC-CCeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+.++.-+.++++++++ |++.-.   ...+.+.+.. .....++..|.
T Consensus       173 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (290)
T 3gvx_A          173 QSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIV-NVARADVVSKPDMIGFLKERSDVWYLSDVWW  237 (290)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEE-ECSCGGGBCHHHHHHHHHHCTTCEEEESCCT
T ss_pred             ccCeEEEEeeccccchhhhhHHHHhhhhcCceEE-EeehhcccCCcchhhhhhhccceEEeecccc
Confidence            9999999999765543333345556788888887 444332   3566666532 23456666664

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.94  E-value=2.7e-09  Score=93.92  Aligned_cols=112  Identities=16%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|.+||++++..                .+             .....++++ ++
T Consensus       171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~  221 (340)
T 4dgs_A          171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLAR  221 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHh
Confidence            3789999999999999999999999999999987521                11             134456666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+-++.-+.++++++++..+.+-.+  ..+.+.+... ....++..|.
T Consensus       222 ~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~  286 (340)
T 4dgs_A          222 DSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFV  286 (340)
T ss_dssp             TCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCS
T ss_pred             cCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcC
Confidence            999999999977665544445566678888887733333222  4566666432 3345666654

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.93  E-value=5.6e-09  Score=95.02  Aligned_cols=77  Identities=23%  Similarity=0.298  Sum_probs=56.8

Q ss_pred             CCCCCcEEEEECCChh--HHHHHHHHHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            1 MEEKMKVMGVVGSGQM--GSGIAQLGVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         1 M~~~~~~I~viG~G~m--G~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      |..+.+||+|||+|.|  |.+++..|+.    .| +|++||+++++++..... .       +  .+..     ...+++
T Consensus         1 m~m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~-~-------~--~l~~-----~~~~I~   64 (450)
T 3fef_A            1 MSLDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVI-G-------N--HSGN-----GRWRYE   64 (450)
T ss_dssp             --CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHH-H-------T--TSTT-----SCEEEE
T ss_pred             CCCCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHH-H-------H--HHhc-----cCCeEE
Confidence            5444579999999998  5899998887    67 999999999887765221 1       1  1110     345678


Q ss_pred             EecCccc-cCCCcEEEEecc
Q 022434           75 CTSNLKD-LHSADIIVEAIV   93 (297)
Q Consensus        75 ~~~~~~~-~~~aD~Vi~~v~   93 (297)
                      .++|.++ +++||+||++++
T Consensus        65 ~TtD~~eAl~dADfVI~air   84 (450)
T 3fef_A           65 AVSTLKKALSAADIVIISIL   84 (450)
T ss_dssp             EESSHHHHHTTCSEEEECCC
T ss_pred             EECCHHHHhcCCCEEEeccc
Confidence            8899865 899999999995

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.90  E-value=5.5e-09  Score=92.07  Aligned_cols=113  Identities=19%  Similarity=0.200  Sum_probs=77.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|.+||+++...+..             .|.             ...+++++ ++.
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~g~-------------~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------EGA-------------IYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------TTC-------------EECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------cCC-------------eEeCCHHHHHhh
Confidence            689999999999999999999999999999986433221             121             34556776 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++ |++.-+   ...+.+.+... ..-.++..|.
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gA~LDVf~  291 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVI-NISRGDLINDDALIEALRSKHLFAAGLDVFA  291 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEE-ECCCCchhCHHHHHHHHHhCCceEEEecCCC
Confidence            999999999766543333344556678888887 555433   35666666432 2234455443

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.89  E-value=7.6e-09  Score=91.55  Aligned_cols=115  Identities=17%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++.. +.+           .+.|.             ...+++++ ++
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g~-------------~~~~~l~ell~  214 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADGF-------------AVAESKDALFE  214 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTTC-------------EECSSHHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcCc-------------eEeCCHHHHHh
Confidence            368999999999999999999999999999998642 222           23342             34556766 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCC-CCeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+.++.-+.++++++++ |++.-++   ..+.+.+.. .....++..|.
T Consensus       215 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~  279 (352)
T 3gg9_A          215 QSDVLSVHLRLNDETRSIITVADLTRMKPTALFV-NTSRAELVEENGMVTALNRGRPGMAAIDVFE  279 (352)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEE-ECSCGGGBCTTHHHHHHHHTSSSEEEECCCS
T ss_pred             hCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEE-ECCCchhhcHHHHHHHHHhCCccEEEecccC
Confidence            9999999999766544333344556678888887 4543332   456665532 22345555554

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.87  E-value=4.2e-09  Score=94.03  Aligned_cols=109  Identities=20%  Similarity=0.195  Sum_probs=79.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--------cEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCChh--hhcccCCCcE
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--------DVWLVDTDPDALV-RATKSISSSIQKFVSKGQLSQA--VGTDAPRRLR   74 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--------~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~i~   74 (297)
                      .||+|||+|.||+++|..|+++|+        +|++|.|+++... ...+.        +......+.  .--....++.
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~--------in~~~~N~~YLpgv~Lp~~i~  106 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEI--------INTRHQNVKYLPGITLPDNLV  106 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHH--------HTTTCCBTTTBTTCCCCSSEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHH--------HHhcCcCcccCCCCcCCCCcE
Confidence            489999999999999999999876        4999998865311 01111        111110000  0112346788


Q ss_pred             EecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           75 CTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        75 ~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++|+++ +++||+||.++|...  .+.+++++.++.+++.++++.+.++.
T Consensus       107 ~t~dl~~al~~ad~ii~avPs~~--~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          107 ANPDLIDSVKDVDIIVFNIPHQF--LPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             EeCCHHHHHhcCCEEEEECChhh--hHHHHHHhccccCCCceeEEeccccc
Confidence            9999876 899999999999755  67889999999999998888887764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.87  E-value=1.5e-08  Score=88.19  Aligned_cols=99  Identities=13%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.||.++|..|+..|+  +|+++|+++++++.....+.+.... .  +         ...++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-~--~---------~~~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI-H--G---------FDTRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH-H--T---------CCCEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc-c--C---------CCcEEEECCCHHHhC
Confidence            489999999999999999999987  9999999998765433333322110 0  0         012234456778899


Q ss_pred             CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||+||.+...+              ..+.+++...+.+++ ++++++
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vi  115 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTII  115 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEE
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEE
Confidence            999999987432              123334445566765 455544

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.86  E-value=2.2e-09  Score=94.95  Aligned_cols=116  Identities=19%  Similarity=0.173  Sum_probs=78.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++...+.+           .+.|.             ...+++++ ++
T Consensus       164 gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~l~ell~  219 (351)
T 3jtm_A          164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELE-----------KETGA-------------KFVEDLNEMLP  219 (351)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHH-----------HHHCC-------------EECSCHHHHGG
T ss_pred             CCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHH-----------HhCCC-------------eEcCCHHHHHh
Confidence            3689999999999999999999999999999986443332           22232             34456766 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-+.++++++++ |++.-+   ...+.+.+... ..-.++..|.
T Consensus       220 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  284 (351)
T 3jtm_A          220 KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIV-NNARGAIMERQAVVDAVESGHIGGYSGDVWD  284 (351)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             cCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEE-ECcCchhhCHHHHHHHHHhCCccEEEeCCCC
Confidence            9999999999765433333344556688888887 554433   35666666432 2234555554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.86  E-value=8.5e-09  Score=96.39  Aligned_cols=150  Identities=22%  Similarity=0.204  Sum_probs=94.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||.++|..|...|++|++||++++. +.+           .+.|.             ... ++++ ++
T Consensus       142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g~-------------~~~-~l~e~~~  195 (529)
T 1ygy_A          142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARA-----------AQLGI-------------ELL-SLDDLLA  195 (529)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHH-----------HHHTC-------------EEC-CHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcCc-------------EEc-CHHHHHh
Confidence            378999999999999999999999999999998642 222           22332             223 5555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCC-CeEEEeecCC--CCCCCc-----eE
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIGMHFMN--PPPLMK-----LV  153 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g~h~~~--p~~~~~-----~v  153 (297)
                      .||+|+.++|...+.+.-+-+++.+.++++++++..+.+-..  ..+.+.+... ....++.+|.  |+...+     .+
T Consensus       196 ~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~v  275 (529)
T 1ygy_A          196 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQV  275 (529)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTE
T ss_pred             cCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCE
Confidence            999999999977443332223355667888887744433322  3455655321 1223445543  221222     35


Q ss_pred             EEecCCC-CcHHHHHH-----HHHHHHHcCCeE
Q 022434          154 EVIRGAD-TSDETFRA-----TKALAERFGKTV  180 (297)
Q Consensus       154 ei~~~~~-~~~~~~~~-----~~~ll~~lg~~~  180 (297)
                      -+.++.. .+++..+.     +.++.+.++..+
T Consensus       276 ilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~  308 (529)
T 1ygy_A          276 VVTPHLGASTAEAQDRAGTDVAESVRLALAGEF  308 (529)
T ss_dssp             EECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            5677766 57777665     666676666544

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.84  E-value=1.5e-08  Score=88.17  Aligned_cols=115  Identities=22%  Similarity=0.319  Sum_probs=75.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++++ +.+           .+.|.             .. .++++ ++
T Consensus       142 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g~-------------~~-~~l~ell~  195 (307)
T 1wwk_A          142 GKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERA-----------KEVNG-------------KF-VDLETLLK  195 (307)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-----------HHTTC-------------EE-CCHHHHHH
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH-----------hhcCc-------------cc-cCHHHHHh
Confidence            368999999999999999999999999999999865 222           23332             22 25555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCC-CCeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+-++.-+.++++++++..+++-.  ...+.+.+.. ...-.++.++.
T Consensus       196 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~  260 (307)
T 1wwk_A          196 ESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFE  260 (307)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred             hCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCC
Confidence            99999999997664332222334456788888774433322  2455555532 22334555554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.83  E-value=1.9e-08  Score=88.45  Aligned_cols=115  Identities=16%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++.. .+           .+.|.             .. .++++ ++
T Consensus       165 g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-----------~~~g~-------------~~-~~l~ell~  218 (335)
T 2g76_A          165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VS-----------ASFGV-------------QQ-LPLEEIWP  218 (335)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HH-----------HHTTC-------------EE-CCHHHHGG
T ss_pred             cCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hh-----------hhcCc-------------ee-CCHHHHHh
Confidence            3689999999999999999999999999999987642 22           23332             22 35555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+-++.-+.++++++++..+++-  ....+.+.+... ..-.++.+|.
T Consensus       219 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~  283 (335)
T 2g76_A          219 LCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT  283 (335)
T ss_dssp             GCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             cCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecC
Confidence            9999999999876533322244556778888877333332  224566655322 2233455554

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.83  E-value=1.7e-08  Score=89.56  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=77.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||+|.||..+|..+...|++|.+||++... +.+           .+.|.             . ..++++ ++
T Consensus       176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g~-------------~-~~~l~ell~  229 (365)
T 4hy3_A          176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SML-----------EENGV-------------E-PASLEDVLT  229 (365)
T ss_dssp             SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHH-----------HHTTC-------------E-ECCHHHHHH
T ss_pred             CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHH-----------hhcCe-------------e-eCCHHHHHh
Confidence            368999999999999999999999999999998532 211           22332             2 245666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCCCeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRPCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-..++++++++ |++.-+   ...+.+.+....-..++..|.
T Consensus       230 ~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~aaLDV~~  293 (365)
T 4hy3_A          230 KSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFI-LLSRADVVDFDALMAAVSSGHIVAASDVYP  293 (365)
T ss_dssp             SCSEEEECSCSSCC---CCCHHHHHTSCTTCEEE-ECSCGGGSCHHHHHHHHHTTSSEEEESCCS
T ss_pred             cCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEE-ECcCCchhCHHHHHHHHHcCCceEEeeCCC
Confidence            9999999999876644434355556788888887 555333   356777664332225666554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.82  E-value=1.8e-09  Score=94.54  Aligned_cols=114  Identities=21%  Similarity=0.220  Sum_probs=78.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++..+.+                          .......++++ ++
T Consensus       137 gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~  190 (324)
T 3evt_A          137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALA  190 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHh
Confidence            3689999999999999999999999999999986532111                          01122345665 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+-++.-+.++++++++ |++.-+   ...+.+.+... ....++..|.
T Consensus       191 ~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~  255 (324)
T 3evt_A          191 TANFIVNALPLTPTTHHLFSTELFQQTKQQPMLI-NIGRGPAVDTTALMTALDHHQLSMAALDVTE  255 (324)
T ss_dssp             HCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEE-ECSCGGGBCHHHHHHHHHTTSCSEEEESSCS
T ss_pred             hCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEE-EcCCChhhhHHHHHHHHHhCCceEEEeCCCC
Confidence            9999999999766544333345556678888877 454333   35677766432 3345666654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.82  E-value=2.7e-08  Score=87.13  Aligned_cols=100  Identities=16%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+..       .+      .....+..++++++
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~-------~~------~~~~~i~~~~d~~~   84 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS-------LF------LKTPKIVSSKDYSV   84 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG-------GG------CSCCEEEECSSGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh-------hc------cCCCeEEEcCCHHH
Confidence            35799999999999999999999998  89999999887665433322210       00      01233455778888


Q ss_pred             cCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 LHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++||+||.+..-              +..+.+++...+.++++ +++++
T Consensus        85 ~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vl  133 (331)
T 4aj2_A           85 TANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLL  133 (331)
T ss_dssp             GTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred             hCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence            9999999987521              12344555666778754 55544

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.81  E-value=7e-09  Score=90.07  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=74.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|.+||++++  +.               +.             ....++++ ++
T Consensus       124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~~-------------~~~~~l~ell~  173 (303)
T 1qp8_A          124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------PW-------------RFTNSLEEALR  173 (303)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------SS-------------CCBSCSHHHHT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------Cc-------------ccCCCHHHHHh
Confidence            36899999999999999999999999999999864  10               11             12345555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCC-CCeEEEeecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSR-PCQVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~-~~~~~g~h~~  144 (297)
                      .||+|+.++|...+.+.-+-++.-+.++++++++ |+++-.+   ..+.+.+.. ...-.+...+
T Consensus       174 ~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gaili-n~srg~~vd~~aL~~aL~~g~i~gA~lDv~  237 (303)
T 1qp8_A          174 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFV-NVGRAEVLDRDGVLRILKERPQFIFASDVW  237 (303)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEE-ECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             hCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEE-ECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence            9999999999876533322234556788888877 4444332   346655532 2334667766

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.80  E-value=1.3e-07  Score=72.47  Aligned_cols=100  Identities=16%  Similarity=0.182  Sum_probs=65.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC---c-
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN---L-   79 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~-   79 (297)
                      .+++|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+           .+.|..            ....|   . 
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~-----------~~~~~~------------~~~gd~~~~~   61 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL-----------EDEGFD------------AVIADPTDES   61 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-----------HHTTCE------------EEECCTTCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHCCCc------------EEECCCCCHH
Confidence            35689999999999999999999999999999999887665           223320            01111   1 


Q ss_pred             --c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHH
Q 022434           80 --K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL  128 (297)
Q Consensus        80 --~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l  128 (297)
                        +  .+.++|+||.+++++. ....+...+.+.. ...+++...+....+.+
T Consensus        62 ~l~~~~~~~~d~vi~~~~~~~-~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l  112 (141)
T 3llv_A           62 FYRSLDLEGVSAVLITGSDDE-FNLKILKALRSVS-DVYAIVRVSSPKKKEEF  112 (141)
T ss_dssp             HHHHSCCTTCSEEEECCSCHH-HHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred             HHHhCCcccCCEEEEecCCHH-HHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence              1  2468999999998543 2333334444444 55566655554443433

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.76  E-value=1.2e-08  Score=89.04  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=73.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++++.+                              +. ..++++ ++
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~  192 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLK  192 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHh
Confidence            36899999999999999999999999999999865211                              11 234554 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++..+.++++++++..+++-.  ...+.+.+.....-.++..|.
T Consensus       193 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~  256 (311)
T 2cuk_A          193 EADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTD  256 (311)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCS
T ss_pred             hCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCC
Confidence            89999999998754332221234456788888773333322  245777665222235566664

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.75  E-value=2.7e-09  Score=93.26  Aligned_cols=114  Identities=19%  Similarity=0.207  Sum_probs=75.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||+|.||..+|..+...|++|++||+++...+..                          .......++++ ++
T Consensus       140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~  193 (324)
T 3hg7_A          140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLA  193 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHH
T ss_pred             cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHh
Confidence            3689999999999999999999999999999986421110                          01112345665 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+.++.-+.++++++++ |++.-+   ...+.+.+... ....++..|.
T Consensus       194 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  258 (324)
T 3hg7_A          194 QADVIVSVLPATRETHHLFTASRFEHCKPGAILF-NVGRGNAINEGDLLTALRTGKLGMAVLDVFE  258 (324)
T ss_dssp             TCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEE-ECSCGGGBCHHHHHHHHHTTSSSEEEESCCS
T ss_pred             hCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCchhhCHHHHHHHHHcCCceEEEeccCC
Confidence            9999999999665433222233445578888877 454433   35677666432 2335555554

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.75  E-value=9.7e-08  Score=87.17  Aligned_cols=78  Identities=17%  Similarity=0.260  Sum_probs=56.1

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT   76 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      .+||+|||+|.. |.+++..|+..     +++|++||+++  ++++.........++   ..+         ...++..+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~---~~~---------~~~~i~~t   74 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAG---------VPIEIHLT   74 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTT---------CCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHh---hcC---------CCcEEEEe
Confidence            579999999999 88888888874     67899999999  887764322211111   111         12456677


Q ss_pred             cCc-cccCCCcEEEEeccc
Q 022434           77 SNL-KDLHSADIIVEAIVE   94 (297)
Q Consensus        77 ~~~-~~~~~aD~Vi~~v~e   94 (297)
                      +|+ +++++||+||.+++.
T Consensus        75 ~D~~eal~gAD~VVitagv   93 (450)
T 1s6y_A           75 LDRRRALDGADFVTTQFRV   93 (450)
T ss_dssp             SCHHHHHTTCSEEEECCCT
T ss_pred             CCHHHHhCCCCEEEEcCCC
Confidence            887 559999999999874

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.75  E-value=1.2e-08  Score=89.17  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=76.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++++.. +           .+.|.             .. .++++ ++
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~-----------~~~g~-------------~~-~~l~ell~  195 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-A-----------EKINA-------------KA-VSLEELLK  195 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-H-----------HHTTC-------------EE-CCHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-H-----------HhcCc-------------ee-cCHHHHHh
Confidence            47899999999999999999999999999999986532 2           23332             22 25555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCC-CeEEEeecCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~p  146 (297)
                      .||+|+.++|...+...-+-++.-+.++++++++..+++-  ....+.+.+... ..-.++.+|.+
T Consensus       196 ~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~  261 (313)
T 2ekl_A          196 NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN  261 (313)
T ss_dssp             HCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSS
T ss_pred             hCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCC
Confidence            9999999999765432111133445678888777443332  224566666432 22345566643

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.74  E-value=1.1e-08  Score=91.70  Aligned_cols=116  Identities=13%  Similarity=0.061  Sum_probs=77.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++...+..           .+.|.             ....++++ ++
T Consensus       191 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~-----------~~~G~-------------~~~~~l~ell~  246 (393)
T 2nac_A          191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-----------KELNL-------------TWHATREDMYP  246 (393)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-----------HHHTC-------------EECSSHHHHGG
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhH-----------hhcCc-------------eecCCHHHHHh
Confidence            3689999999999999999999999999999986543322           22232             23345665 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-+.++++++++ |++.-.+   ..+.+.+... ..-.++..|.
T Consensus       247 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gA~lDV~~  311 (393)
T 2nac_A          247 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALESGRLAGYAGDVWF  311 (393)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred             cCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEE-ECCCchHhhHHHHHHHHHcCCeeEEEEEecC
Confidence            9999999999665432222234446678888877 4443332   4577766432 2234556554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.72  E-value=4.9e-08  Score=87.96  Aligned_cols=111  Identities=22%  Similarity=0.322  Sum_probs=75.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||+|.||..+|..+...|++|++||+++..                ..+            .+....++++ ++
T Consensus       145 gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~----------------~~~------------~~~~~~~l~ell~  196 (404)
T 1sc6_A          145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL----------------PLG------------NATQVQHLSDLLN  196 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC----------------CCT------------TCEECSCHHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchh----------------ccC------------CceecCCHHHHHh
Confidence            368999999999999999999999999999997531                011            1234456666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      .||+|+.++|...+.+.-+-++.-..++++++++ |++.-.   ...+.+.+... ..-.++..|
T Consensus       197 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-N~aRg~~vd~~aL~~aL~~g~i~gA~lDVf  260 (404)
T 1sc6_A          197 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALASKHLAGAAIDVF  260 (404)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             cCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEE-ECCCChHHhHHHHHHHHHcCCccEEEEeec
Confidence            9999999999876544323244445678888877 444433   24666666432 222344544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.72  E-value=9.3e-08  Score=83.61  Aligned_cols=99  Identities=17%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+||+|||+|.+|.+++..|+..|+  +|.++|+++++++.....+.+.. .+  .+         ..-++. .++.+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~--~~---------~~~~v~-~~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PY--SP---------TTVRVK-AGEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GG--SS---------SCCEEE-ECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hh--cC---------CCeEEE-eCCHHHh
Confidence            4699999999999999999999885  89999999887664322222210 00  00         011233 2556679


Q ss_pred             CCCcEEEEeccccH--------------HHHHHHHHHHHhhcCCCeEEE
Q 022434           83 HSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++||+||.+++...              .+.+++...+.++++ +++++
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~vi  120 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKF-DGIFL  120 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEE
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEE
Confidence            99999999984321              234455556777754 55544

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.71  E-value=1.3e-07  Score=81.52  Aligned_cols=106  Identities=19%  Similarity=0.245  Sum_probs=69.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.+|.++|..|+..+.  ++.++|+++++++.....+.+...            .-....++..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~------------~~~~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA------------GIDKYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG------------GGTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc------------cCCCCCeEecCCCHHHhC
Confidence            589999999999999999988875  899999998766543333332210            001123445677899999


Q ss_pred             CCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +||+||.+..-              +..+.+.+..++.++++ +++++.-|....
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-~aivlvvsNPvd  122 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMD  122 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHH
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCcch
Confidence            99999987621              22344455566777765 455443444333

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.71  E-value=1.2e-07  Score=83.03  Aligned_cols=102  Identities=14%  Similarity=0.241  Sum_probs=61.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ec
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~   77 (297)
                      |.++.+||+|||+|.+|.+++..|+..|+  +|+++|+++++++.....        +..+.       .....+.+ .+
T Consensus         3 m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~d--------l~~~~-------~~~~~~~i~~~   67 (318)
T 1y6j_A            3 MVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGL-------PFMGQMSLYAG   67 (318)
T ss_dssp             ----CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSC-------CCTTCEEEC--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH--------HHHhH-------HhcCCeEEEEC
Confidence            33345789999999999999999999998  999999998766532111        11211       01122222 24


Q ss_pred             CccccCCCcEEEEeccccH--------------HHHHHHHHHHHhhcCCCeEEEe
Q 022434           78 NLKDLHSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +.+++++||+||.+++...              .+..++.+.+.+++ ++++++.
T Consensus        68 ~~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv  121 (318)
T 1y6j_A           68 DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILV  121 (318)
T ss_dssp             CGGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEE
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Confidence            5667999999999986432              12345556677776 4555543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.71  E-value=8e-08  Score=86.39  Aligned_cols=111  Identities=21%  Similarity=0.285  Sum_probs=73.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||+|.||..+|..+...|++|.+||+++...                .            .......++++ ++
T Consensus       156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~------------~~~~~~~sl~ell~  207 (416)
T 3k5p_A          156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------Y------------GNVKPAASLDELLK  207 (416)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------B------------TTBEECSSHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------c------------cCcEecCCHHHHHh
Confidence            3689999999999999999999999999999874310                0            11134456666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCCC-eEEEeecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRPC-QVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~~-~~~g~h~~  144 (297)
                      .||+|+.++|...+.+.-+-++.-..++++++++ |++.-   ....+.+.+.... .-.++..|
T Consensus       208 ~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailI-N~aRG~vvd~~aL~~aL~~g~i~gAalDVf  271 (416)
T 3k5p_A          208 TSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLI-NNARGSDVDLEALAKVLQEGHLAGAAIDVF  271 (416)
T ss_dssp             HCSEEEECCCC-----CCBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHHTTSEEEEEECCC
T ss_pred             hCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEE-ECCCChhhhHHHHHHHHHcCCccEEEeCCC
Confidence            9999999999876544333344556678888887 44432   3356777764332 23455533

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.70  E-value=3.4e-07  Score=69.57  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=60.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC---c--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN---L--   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~--   79 (297)
                      .++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+.+          +.|..            ....+   .  
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------~~~~~------------~~~~d~~~~~~   61 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----------EIDAL------------VINGDCTKIKT   61 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HCSSE------------EEESCTTSHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----------hcCcE------------EEEcCCCCHHH
Confidence            368999999999999999999999999999999887665411          11210            01111   1  


Q ss_pred             ---cccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           80 ---KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        80 ---~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                         ..++++|+||.+++.+.. . ..+..+.+..++..+++..
T Consensus        62 l~~~~~~~~d~vi~~~~~~~~-~-~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           62 LEDAGIEDADMYIAVTGKEEV-N-LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             HHHTTTTTCSEEEECCSCHHH-H-HHHHHHHHHTTCCCEEEEC
T ss_pred             HHHcCcccCCEEEEeeCCchH-H-HHHHHHHHHcCCCEEEEEe
Confidence               125789999999987532 2 2333344445556666643

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.70  E-value=4e-09  Score=91.97  Aligned_cols=114  Identities=13%  Similarity=0.129  Sum_probs=76.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++..+.+                          .......++++ ++
T Consensus       139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~  192 (315)
T 3pp8_A          139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLN  192 (315)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHh
Confidence            3689999999999999999999999999999987532110                          00001134555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-+.++++++++ |++.-+   ...+.+.+... ..-.++..|.
T Consensus       193 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~  257 (315)
T 3pp8_A          193 QTRVLINLLPNTAQTVGIINSELLDQLPDGAYVL-NLARGVHVQEADLLAALDSGKLKGAMLDVFS  257 (315)
T ss_dssp             TCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             hCCEEEEecCCchhhhhhccHHHHhhCCCCCEEE-ECCCChhhhHHHHHHHHHhCCccEEEcCCCC
Confidence            9999999999766543333345556788888887 554333   35666666432 2234555554

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.69  E-value=1.1e-07  Score=83.74  Aligned_cols=95  Identities=23%  Similarity=0.294  Sum_probs=67.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-   80 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   80 (297)
                      .+||+|||+ |.+|.++|..++..|.  +|+++|+++++++.....+.+.        .+       ...++.+++++. 
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~-------~~~~i~~t~d~~~   72 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GF-------EGLNLTFTSDIKE   72 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CC-------TTCCCEEESCHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cC-------CCCceEEcCCHHH
Confidence            469999998 9999999999999984  8999999988766433222221        11       113566777775 


Q ss_pred             ccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCe
Q 022434           81 DLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASA  114 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~  114 (297)
                      ++++||+||.+...              +..+.+.+...+.+.++...
T Consensus        73 al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           73 ALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             HHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            48999999998621              22345556667888876553

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.69  E-value=2.5e-07  Score=80.83  Aligned_cols=97  Identities=15%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   81 (297)
                      .+||+|||+|.+|.+++..|+..++  +++++|+++++++.....+.+..               .....+.+ .++.++
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~---------------~~~~~~~v~~~~~~a   69 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ---------------AFTAPKKIYSGEYSD   69 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG---------------GGSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH---------------HhcCCeEEEECCHHH
Confidence            4799999999999999999999887  89999999887764322222110               01122223 355667


Q ss_pred             cCCCcEEEEeccccH--------------HHHHHHHHHHHhhcCCCeEEE
Q 022434           82 LHSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++||+||.+.+-..              .+.+++...+.+++ ++++++
T Consensus        70 ~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~ii  118 (318)
T 1ez4_A           70 CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFL  118 (318)
T ss_dssp             GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEE
T ss_pred             hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            999999999875322              23444555677775 455444

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.69  E-value=5.5e-09  Score=91.77  Aligned_cols=115  Identities=18%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++...+..           .+.|.             .. .++++ ++
T Consensus       145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g~-------------~~-~~l~ell~  199 (330)
T 4e5n_A          145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE-----------QRLGL-------------RQ-VACSELFA  199 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHH-----------HHHTE-------------EE-CCHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHH-----------HhcCc-------------ee-CCHHHHHh
Confidence            3689999999999999999999999999999987433322           12231             22 35655 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+...-+.++.-+.++++++++ |++.-.   ...+.+.+... ....++..|.
T Consensus       200 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~arg~~vd~~aL~~aL~~g~i~gA~lDV~~  264 (330)
T 4e5n_A          200 SSDFILLALPLNADTLHLVNAELLALVRPGALLV-NPCRGSVVDEAAVLAALERGQLGGYAADVFE  264 (330)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCG
T ss_pred             hCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEE-ECCCCchhCHHHHHHHHHhCCccEEEecccc
Confidence            8999999999765543333345556788888887 444332   35666665322 2234555443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.68  E-value=1e-08  Score=91.24  Aligned_cols=116  Identities=20%  Similarity=0.135  Sum_probs=77.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|.||..+|..+...|++ |++||+++...+..           .+.|.             ....++++ +
T Consensus       164 g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~-----------~~~g~-------------~~~~~l~ell  219 (364)
T 2j6i_A          164 GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAE-----------EKVGA-------------RRVENIEELV  219 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHH-----------HHTTE-------------EECSSHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHH-----------HhcCc-------------EecCCHHHHH
Confidence            36899999999999999999999998 99999987544332           22232             23345665 7


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +.||+|+.++|...+.+.-+-++.-+.++++++++ |++.-   ....+.+.+... ..-.++..|.
T Consensus       220 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~arG~~vd~~aL~~aL~~g~i~gA~LDVf~  285 (364)
T 2j6i_A          220 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV-NTARGAICVAEDVAAALESGQLRGYGGDVWF  285 (364)
T ss_dssp             HTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             hcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEE-ECCCCchhCHHHHHHHHHcCCCcEEEEecCC
Confidence            89999999999865433322234446678888777 44433   235666666432 2234455554

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.67  E-value=1.1e-08  Score=90.40  Aligned_cols=116  Identities=19%  Similarity=0.188  Sum_probs=74.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++... .           .+.|.             ....++++ ++
T Consensus       168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-----------~~~g~-------------~~~~~l~ell~  222 (347)
T 1mx3_A          168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-E-----------RALGL-------------QRVSTLQDLLF  222 (347)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-H-----------HHHTC-------------EECSSHHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-H-----------hhcCC-------------eecCCHHHHHh
Confidence            36899999999999999999999999999999765311 1           11232             23345655 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+... ..-.+..++.
T Consensus       223 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~  287 (347)
T 1mx3_A          223 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHE  287 (347)
T ss_dssp             HCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             cCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecc
Confidence            9999999999765433222244445678888777333332  235566665322 2233455543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.66  E-value=2.2e-07  Score=81.27  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=66.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   80 (297)
                      ..+||+|||+|.||.++|..|+..|+  +|+++|+++++++.....+.+        ..       .....+.. +++++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~--------~~-------~~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLED--------AL-------PFTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHT--------TG-------GGSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhh--------hh-------hhcCCcEEEECcHH
Confidence            35799999999999999999999997  899999998877654322221        11       01122333 45577


Q ss_pred             ccCCCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           81 DLHSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ++++||+||.+....              ..+.+++...+.++++ +++++.-|
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvt  125 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAA  125 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECS
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEcc
Confidence            799999999986321              1223445556777665 55554333

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.66  E-value=9.5e-09  Score=91.37  Aligned_cols=112  Identities=19%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||+|.||..+|..+...|++|.+||++.+..               ..+              ....++++ ++
T Consensus       119 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~---------------~~~--------------~~~~sl~ell~  169 (381)
T 3oet_A          119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR---------------GDE--------------GDFRTLDELVQ  169 (381)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT---------------TCC--------------SCBCCHHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh---------------ccC--------------cccCCHHHHHh
Confidence            3689999999999999999999999999999754311               011              12345665 78


Q ss_pred             CCcEEEEeccccHH----HHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCC-CCeEEEeecCCC
Q 022434           84 SADIIVEAIVESED----VKKKLFSELDKITKASAILASNTSSIS---ITRLASATSR-PCQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~----~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~-~~~~~g~h~~~p  146 (297)
                      +||+|+.++|-..+    .+.-+-++.-+.++++++++ |++.-+   ...+.+.+.. .....++..|.+
T Consensus       170 ~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~  239 (381)
T 3oet_A          170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILI-NACRGPVVDNAALLARLNAGQPLSVVLDVWEG  239 (381)
T ss_dssp             HCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCCEEEEESCCTT
T ss_pred             hCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCCeEEEeecccc
Confidence            99999999986544    22222234445678888887 555433   3567776643 234556666653

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.64  E-value=4.2e-08  Score=85.64  Aligned_cols=89  Identities=13%  Similarity=0.252  Sum_probs=64.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||..++..|++. |+ +|.+|||++++.+.+.+.          .+.           ++...+++++
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~----------~~~-----------~~~~~~~~~e  192 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT----------VQG-----------EVRVCSSVQE  192 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHH----------SSS-----------CCEECSSHHH
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------hhC-----------CeEEeCCHHH
Confidence            357899999999999999999876 86 899999999887765221          120           2345667765


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       ++++|+||.|+|...    .++..  +.++++++|++.
T Consensus       193 ~v~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~  225 (312)
T 2i99_A          193 AVAGADVIITVTLATE----PILFG--EWVKPGAHINAV  225 (312)
T ss_dssp             HHTTCSEEEECCCCSS----CCBCG--GGSCTTCEEEEC
T ss_pred             HHhcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeC
Confidence             789999999998632    22222  456677776643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.63  E-value=6.2e-07  Score=68.65  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-----
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-----   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-----   79 (297)
                      ..+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+           .+.|..            ....|.     
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~-----------~~~g~~------------~i~gd~~~~~~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL-----------RERGVR------------AVLGNAANEEI   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-----------HHTTCE------------EEESCTTSHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HHcCCC------------EEECCCCCHHH
Confidence            3589999999999999999999999999999999987765           233321            111111     


Q ss_pred             -c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           80 -K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        80 -~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +  .+.++|+||.+++++.... .+...+....+.-.+|+..
T Consensus        64 l~~a~i~~ad~vi~~~~~~~~n~-~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           64 MQLAHLECAKWLILTIPNGYEAG-EIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHHTTGGGCSEEEECCSCHHHHH-HHHHHHHHHCSSSEEEEEE
T ss_pred             HHhcCcccCCEEEEECCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence             1  2578999999999876432 2333344444444556543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.62  E-value=4.8e-07  Score=79.31  Aligned_cols=98  Identities=18%  Similarity=0.247  Sum_probs=65.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   80 (297)
                      +.+||+|||+|.+|.+++..|+..++  +++++|+++++++.....+.        ...       .....+.+ .++.+
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~--------~~~-------~~~~~~~i~~~~~~   72 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLS--------NAL-------PFTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHH--------TTG-------GGSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHH--------HHH-------HhcCCeEEEECCHH
Confidence            34799999999999999999998886  89999999887764322221        110       01122233 35566


Q ss_pred             ccCCCcEEEEeccccH--------------HHHHHHHHHHHhhcCCCeEEE
Q 022434           81 DLHSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++++||+||.+.+-..              .+.+++...+.++++ +++++
T Consensus        73 a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p-~a~ii  122 (326)
T 2zqz_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFL  122 (326)
T ss_dssp             GGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTC-CSEEE
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence            7999999999875332              234445556777764 55444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.62  E-value=4.6e-07  Score=72.58  Aligned_cols=88  Identities=15%  Similarity=0.207  Sum_probs=59.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe---cC---
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT---SN---   78 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~---   78 (297)
                      ++|.|+|+|.||..+|..|.+. |++|+++|+++++++.+           .+.|..            ...   ++   
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~-----------~~~g~~------------~~~gd~~~~~~   96 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH-----------RSEGRN------------VISGDATDPDF   96 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH-----------HHTTCC------------EEECCTTCHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH-----------HHCCCC------------EEEcCCCCHHH
Confidence            5799999999999999999999 99999999999887665           333421            011   11   


Q ss_pred             c-c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           79 L-K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        79 ~-~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      + +  .+.++|+||.+++++... ..+...+....+...|++
T Consensus        97 l~~~~~~~~ad~vi~~~~~~~~~-~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A           97 WERILDTGHVKLVLLAMPHHQGN-QTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             HHTBCSCCCCCEEEECCSSHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred             HHhccCCCCCCEEEEeCCChHHH-HHHHHHHHHHCCCCEEEE
Confidence            1 1  256899999999875542 233333444333334444

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.61  E-value=1.9e-07  Score=81.26  Aligned_cols=97  Identities=25%  Similarity=0.257  Sum_probs=64.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|.+++..|+..+  .+++++|+++++++.....+.+        ..  +  . ...-++.. ++.++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~--------~~--~--~-~~~~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH--------AT--P--F-AHPVWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHT--------TG--G--G-SCCCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHH--------hH--h--h-cCCeEEEE-CCHHHhC
Confidence            48999999999999999999987  5899999998877643222211        10  0  0 01112332 4667799


Q ss_pred             CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||+||.+.+-.              ..+.+++...+.++++ +++++
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~ii  113 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAP-EAVLL  113 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCC-CcEEE
Confidence            999999987432              2344455566777764 45444

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.61  E-value=1.9e-08  Score=88.59  Aligned_cols=112  Identities=21%  Similarity=0.185  Sum_probs=75.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||++++..              .+.+             +... ++++ ++
T Consensus       148 gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------~~~~-------------~~~~-~l~ell~  199 (343)
T 2yq5_A          148 NLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--------------FEPF-------------LTYT-DFDTVLK  199 (343)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--------------GTTT-------------CEEC-CHHHHHH
T ss_pred             CCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--------------hhcc-------------cccc-CHHHHHh
Confidence            3689999999999999999999999999999987531              1111             1233 6666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCC-CCeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      +||+|+.++|...+.+.-+-++.-+.++++++++ |++.-+   ...+.+.+.. .....++..|.
T Consensus       200 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~  264 (343)
T 2yq5_A          200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLI-NCARGELVDTGALIKALQDGEIAGAGLDTLA  264 (343)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSCEEESCCT
T ss_pred             cCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEE-ECCCChhhhHHHHHHHHHcCCCcEEEecccc
Confidence            9999999999765433333344455678888887 554433   3566666532 12335555554

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.61  E-value=1.6e-08  Score=90.12  Aligned_cols=111  Identities=20%  Similarity=0.183  Sum_probs=73.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|||||.|.||..+|..|...|++|++||++++..               +.|.              ...++++ ++
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g~--------------~~~~l~ell~  166 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPDG--------------EFVSLERLLA  166 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STTS--------------CCCCHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccCc--------------ccCCHHHHHH
Confidence            3689999999999999999999999999999765321               1111              1235555 77


Q ss_pred             CCcEEEEeccccHH----HHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESED----VKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~----~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +||+|+.++|...+    .+.-+-++.-+.++++++++ |++.-++   ..+.+.+... ..-.++..|.
T Consensus       167 ~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~  235 (380)
T 2o4c_A          167 EADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLV-NASRGAVVDNQALRRLLEGGADLEVALDVWE  235 (380)
T ss_dssp             HCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred             hCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEE-ECCCCcccCHHHHHHHHHhCCCceEEeeeec
Confidence            99999999987654    22222234445678888877 4444332   5676666432 2345555554

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.57  E-value=4.8e-08  Score=85.97  Aligned_cols=113  Identities=17%  Similarity=0.147  Sum_probs=74.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||+++++.  +.           + +.             ...+++++ ++.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~-----------~-~~-------------~~~~~l~ell~~  199 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LE-----------K-KG-------------YYVDSLDDLYKQ  199 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HH-----------H-TT-------------CBCSCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HH-----------h-hC-------------eecCCHHHHHhh
Confidence            689999999999999999999999999999987643  10           0 10             12335555 788


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+... ..-.++..|.
T Consensus       200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~  263 (333)
T 1j4a_A          200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE  263 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCC
Confidence            999999999766533222233445678888777333332  235666666432 2334555554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.57  E-value=3.4e-08  Score=76.16  Aligned_cols=70  Identities=16%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..++..|...|++|+++|+++++.+.+.+.          .|.           .+...++.++ ++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~----------~~~-----------~~~~~~~~~~~~~   79 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEK----------YEY-----------EYVLINDIDSLIK   79 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHH----------HTC-----------EEEECSCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHH----------hCC-----------ceEeecCHHHHhc
Confidence            4689999999999999999999999999999999887664221          111           1123345544 78


Q ss_pred             CCcEEEEecccc
Q 022434           84 SADIIVEAIVES   95 (297)
Q Consensus        84 ~aD~Vi~~v~e~   95 (297)
                      ++|+||.|+|..
T Consensus        80 ~~Divi~at~~~   91 (144)
T 3oj0_A           80 NNDVIITATSSK   91 (144)
T ss_dssp             TCSEEEECSCCS
T ss_pred             CCCEEEEeCCCC
Confidence            899999999865

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.53  E-value=8.1e-07  Score=69.19  Aligned_cols=39  Identities=36%  Similarity=0.486  Sum_probs=35.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      .++|.|+|+|.+|..++..|...|++|+++|+++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            468999999999999999999999999999999886654

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.52  E-value=2.5e-07  Score=70.71  Aligned_cols=86  Identities=19%  Similarity=0.335  Sum_probs=59.0

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    |.||..++.+|.+.||+|+.+|++.+.+                .|             +.+..+++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i----------------~G-------------~~~~~s~~   64 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI----------------EG-------------LKCYRSVR   64 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE----------------TT-------------EECBSSGG
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE----------------CC-------------eeecCCHH
Confidence            468999999    9999999999999999866666553211                12             24556777


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      + .+.+|+++.++|.  +...+++.++.+ .....++. .+++.
T Consensus        65 el~~~vDlvii~vp~--~~v~~v~~~~~~-~g~~~i~~-~~~~~  104 (138)
T 1y81_A           65 ELPKDVDVIVFVVPP--KVGLQVAKEAVE-AGFKKLWF-QPGAE  104 (138)
T ss_dssp             GSCTTCCEEEECSCH--HHHHHHHHHHHH-TTCCEEEE-CTTSC
T ss_pred             HhCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEE-cCccH
Confidence            7 4679999999994  334556666544 33455555 44444

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.50  E-value=8.1e-07  Score=67.74  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc--cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK--DL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~   82 (297)
                      +++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+           .+.+..      .......-...+.  .+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~-----------~~~~~~------~~~~d~~~~~~l~~~~~   68 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-----------ASYATH------AVIANATEENELLSLGI   68 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTT-----------TTTCSE------EEECCTTCHHHHHTTTG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHhCCE------EEEeCCCCHHHHHhcCC
Confidence            4679999999999999999999999999999998765443           111210      0000000000111  15


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +++|+||.+++.+.+....+...+.. ..+..+++..+
T Consensus        69 ~~~d~vi~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~  105 (144)
T 2hmt_A           69 RNFEYVIVAIGANIQASTLTTLLLKE-LDIPNIWVKAQ  105 (144)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHH-TTCSEEEEECC
T ss_pred             CCCCEEEECCCCchHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            68999999999764332233333333 34455655433

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.50  E-value=1.3e-07  Score=69.69  Aligned_cols=41  Identities=32%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~   44 (297)
                      ..++|.|+|+|.||..++..|.+.| ++|+++|+++++++.+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~   45 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL   45 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            4578999999999999999999999 9999999999877654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.48  E-value=2.1e-07  Score=81.80  Aligned_cols=111  Identities=20%  Similarity=0.211  Sum_probs=74.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++..  +            +             ..+.. .++++ ++.
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~~  197 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------H-------------PDFDY-VSLEDLFKQ  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------C-------------TTCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------H-------------hcccc-CCHHHHHhc
Confidence            689999999999999999999999999999986421  0            0             00122 25555 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++ |++.-   ....+.+.+... ..-.++..|.
T Consensus       198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~g~i~gA~LDV~~  261 (333)
T 1dxy_A          198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  261 (333)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEE-ECCCCcccCHHHHHHHHHhCCccEEEEecCC
Confidence            999999999876543322234445678888776 44332   335677766432 2234555554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.43  E-value=5.2e-07  Score=77.24  Aligned_cols=69  Identities=16%  Similarity=0.260  Sum_probs=53.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+++..|.+.|++|+++||++++++.+.+          +.|             +...++.++ ++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~----------~~g-------------~~~~~~~~~~~~  185 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQ----------KFP-------------LEVVNSPEEVID  185 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTT----------TSC-------------EEECSCGGGTGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH----------HcC-------------CeeehhHHhhhc
Confidence            368999999999999999999999999999999987665410          001             233445544 78


Q ss_pred             CCcEEEEeccccH
Q 022434           84 SADIIVEAIVESE   96 (297)
Q Consensus        84 ~aD~Vi~~v~e~~   96 (297)
                      ++|+||.|+|...
T Consensus       186 ~aDiVi~atp~~~  198 (275)
T 2hk9_A          186 KVQVIVNTTSVGL  198 (275)
T ss_dssp             GCSEEEECSSTTS
T ss_pred             CCCEEEEeCCCCC
Confidence            9999999998654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.42  E-value=1.3e-07  Score=83.09  Aligned_cols=112  Identities=21%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++++.  +            +             ..+.. .++++ ++
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~  197 (331)
T 1xdw_A          146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------E-------------DYCTQ-VSLDEVLE  197 (331)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------T-------------TTCEE-CCHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------H-------------hcccc-CCHHHHHh
Confidence            3689999999999999999999999999999986421  0            0             00122 35555 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++.-+.++++++++ |++.-.   ...+.+.+... ..-.++..|.
T Consensus       198 ~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~li-n~srg~~vd~~aL~~aL~~g~i~gA~LDV~~  262 (331)
T 1xdw_A          198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILV-NCARGQLVDTEAVIEAVESGKLGGYGCDVLD  262 (331)
T ss_dssp             HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEE-ECCCcccccHHHHHHHHHhCCceEEEEecCC
Confidence            9999999999765432222233445678888776 444433   35666666432 2334555554

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.42  E-value=4.3e-07  Score=70.03  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=65.5

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .++|+|||+    |.||..++.+|.+.||+|+.+|++.  +.+                             ..+.+..+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~s   63 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYAT   63 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCC
Confidence            368999999    8999999999999999977777654  211                             11245566


Q ss_pred             ccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhc-CCCCeEEE
Q 022434           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT-SRPCQVIG  140 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~-~~~~~~~g  140 (297)
                      +++ ...+|+++.++|...  ..+++.++.+ .....+++ .+++.. .++.+.+ ....+++|
T Consensus        64 l~el~~~~Dlvii~vp~~~--v~~v~~~~~~-~g~~~i~i-~~~~~~-~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           64 LADVPEKVDMVDVFRNSEA--AWGVAQEAIA-IGAKTLWL-QLGVIN-EQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTTCSSCCSEEECCSCSTH--HHHHHHHHHH-HTCCEEEC-CTTCCC-HHHHHHHHTTTCEEEC
T ss_pred             HHHcCCCCCEEEEEeCHHH--HHHHHHHHHH-cCCCEEEE-cCChHH-HHHHHHHHHcCCEEEc
Confidence            666 467899999999533  4456666554 34455555 344443 3344333 23345544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.39  E-value=7e-07  Score=77.43  Aligned_cols=69  Identities=25%  Similarity=0.256  Sum_probs=52.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|++|++||+++++.+.+           .+.|.           ......++++ ++
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g~-----------~~~~~~~l~~~l~  214 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI-----------TEMGL-----------VPFHTDELKEHVK  214 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-----------HHTTC-----------EEEEGGGHHHHST
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHCCC-----------eEEchhhHHHHhh
Confidence            4789999999999999999999999999999998765543           12232           0001234444 78


Q ss_pred             CCcEEEEecccc
Q 022434           84 SADIIVEAIVES   95 (297)
Q Consensus        84 ~aD~Vi~~v~e~   95 (297)
                      ++|+||.++|..
T Consensus       215 ~aDvVi~~~p~~  226 (300)
T 2rir_A          215 DIDICINTIPSM  226 (300)
T ss_dssp             TCSEEEECCSSC
T ss_pred             CCCEEEECCChh
Confidence            999999999863

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.38  E-value=8.5e-07  Score=76.65  Aligned_cols=69  Identities=22%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.||..+|..+...|.+|+++|+++++.+.+           .+.|..           .....++++ ++
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~~-----------~~~~~~l~~~l~  212 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI-----------AEMGME-----------PFHISKAAQELR  212 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-----------HHTTSE-----------EEEGGGHHHHTT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HHCCCe-----------ecChhhHHHHhc
Confidence            4689999999999999999999999999999998765443           222320           001134444 78


Q ss_pred             CCcEEEEecccc
Q 022434           84 SADIIVEAIVES   95 (297)
Q Consensus        84 ~aD~Vi~~v~e~   95 (297)
                      ++|+|+.++|..
T Consensus       213 ~aDvVi~~~p~~  224 (293)
T 3d4o_A          213 DVDVCINTIPAL  224 (293)
T ss_dssp             TCSEEEECCSSC
T ss_pred             CCCEEEECCChH
Confidence            999999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.34  E-value=5.7e-06  Score=68.11  Aligned_cols=88  Identities=11%  Similarity=0.118  Sum_probs=59.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC------c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN------L   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~   79 (297)
                      |+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+          ..|..            ....|      +
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~----------~~~~~------------~i~gd~~~~~~l   58 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAK----------KLKAT------------IIHGDGSHKEIL   58 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----------HSSSE------------EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----------HcCCe------------EEEcCCCCHHHH
Confidence            47999999999999999999999999999999998766421          11210            11111      1


Q ss_pred             c--ccCCCcEEEEeccccHHHHHHHHHHHHh-hcCCCeEEE
Q 022434           80 K--DLHSADIIVEAIVESEDVKKKLFSELDK-ITKASAILA  117 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~  117 (297)
                      +  .++++|+||.+++++..  ......+.+ ..+...+++
T Consensus        59 ~~a~i~~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           59 RDAEVSKNDVVVILTPRDEV--NLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             HHHTCCTTCEEEECCSCHHH--HHHHHHHHHHTSCCCEEEE
T ss_pred             HhcCcccCCEEEEecCCcHH--HHHHHHHHHHHcCCCeEEE
Confidence            1  26789999999988653  233333333 344445555

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.32  E-value=3.3e-06  Score=74.16  Aligned_cols=106  Identities=10%  Similarity=0.085  Sum_probs=66.1

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTD----PDALVRATKSISSSIQKFVSKGQLSQAVGTD   68 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   68 (297)
                      |.++.+||+|+|+ |.+|.+++..|+..|+       +|+++|++    +++++.....        +..+...      
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d--------l~~~~~~------   66 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME--------IDDCAFP------   66 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH--------HHTTTCT------
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH--------Hhhhccc------
Confidence            6445679999998 9999999999999886       89999999    5544321111        1222110      


Q ss_pred             cCCCcEEecCcc-ccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           69 APRRLRCTSNLK-DLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        69 ~~~~i~~~~~~~-~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ....+..+++.. ++++||+||.+..-              +..+.+.+.+.+.+++.++++++..|
T Consensus        67 ~~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           67 LLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             TEEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ccCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            113455566654 48999999987531              11234456666777764565554333

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.28  E-value=7.1e-06  Score=72.37  Aligned_cols=98  Identities=16%  Similarity=0.226  Sum_probs=65.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |+ ++.||+|||+|.||..++..|.+. +++|+ ++|+++++++.+.+          +.|             ....++
T Consensus         1 M~-~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------~~g-------------~~~~~~   56 (344)
T 3euw_A            1 MS-LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------ANG-------------AEAVAS   56 (344)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------TTT-------------CEEESS
T ss_pred             CC-CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------HcC-------------CceeCC
Confidence            54 356899999999999999999886 67876 88999988765411          112             246677


Q ss_pred             ccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  ++|+|+.|+|...... .+...++.   ...+++..+.+.+..
T Consensus        57 ~~~~l~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~v~~EKP~~~~~~  103 (344)
T 3euw_A           57 PDEVFARDDIDGIVIGSPTSTHVD-LITRAVER---GIPALCEKPIDLDIE  103 (344)
T ss_dssp             HHHHTTCSCCCEEEECSCGGGHHH-HHHHHHHT---TCCEEECSCSCSCHH
T ss_pred             HHHHhcCCCCCEEEEeCCchhhHH-HHHHHHHc---CCcEEEECCCCCCHH
Confidence            776 55  7999999999877532 22222322   234666555455553

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.27  E-value=5.5e-06  Score=73.44  Aligned_cols=95  Identities=18%  Similarity=0.235  Sum_probs=64.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ++.||+|||+|.||..++..+.+.  +++++ ++|+++++++.+.+.          .|             +...+|++
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------~~-------------~~~~~~~~   68 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------TG-------------ARGHASLT   68 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------HC-------------CEEESCHH
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CceeCCHH
Confidence            457999999999999999999887  77865 889999887665221          12             24667777


Q ss_pred             c-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           81 D-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      + ++  ++|+|+.|+|...... .+...++.   ...+++--..+.+.
T Consensus        69 ~ll~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~v~~EKP~a~~~  112 (354)
T 3q2i_A           69 DMLAQTDADIVILTTPSGLHPT-QSIECSEA---GFHVMTEKPMATRW  112 (354)
T ss_dssp             HHHHHCCCSEEEECSCGGGHHH-HHHHHHHT---TCEEEECSSSCSSH
T ss_pred             HHhcCCCCCEEEECCCcHHHHH-HHHHHHHC---CCCEEEeCCCcCCH
Confidence            6 54  7999999999876532 22222322   33456544444544

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.26  E-value=8.9e-06  Score=70.51  Aligned_cols=99  Identities=18%  Similarity=0.269  Sum_probs=61.7

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCc
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDGL--DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNL   79 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~   79 (297)
                      +||+|+| +|.+|.+++..|+..|+  +++++|+  ++++++.....+.+.    ...           ...+.+. ++.
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~----~~~-----------~~~~~v~~~~~   65 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----IAY-----------DSNTRVRQGGY   65 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----HTT-----------TCCCEEEECCG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHH----Hhh-----------CCCcEEEeCCH
Confidence            4899999 89999999999999886  7999999  876654322121111    100           1112222 456


Q ss_pred             cccCCCcEEEEecccc--H------------HHHHHHHHHHHhhcCCCeEEEecC
Q 022434           80 KDLHSADIIVEAIVES--E------------DVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~--~------------~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +++++||+||.+..-.  .            .+.+.+.+.+.+..+ +++++..|
T Consensus        66 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv~S  119 (303)
T 1o6z_A           66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTS  119 (303)
T ss_dssp             GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECC
T ss_pred             HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEeC
Confidence            6699999999887421  1            234455556666654 55554333

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.25  E-value=1.5e-06  Score=78.14  Aligned_cols=88  Identities=25%  Similarity=0.265  Sum_probs=62.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|+|.|.+|.++|..|...|.+|+++|+++.+...+           ...|.             .. .++++ ++
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A-----------~~~G~-------------~~-~sL~eal~  265 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQA-----------AMEGY-------------QV-LLVEDVVE  265 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EE-CCHHHHTT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHH-----------HHhCC-------------ee-cCHHHHHh
Confidence            4789999999999999999999999999999998765443           23342             22 35555 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      .||+|+.+.....-+.    .+.-+.++++++|+ |++.
T Consensus       266 ~ADVVilt~gt~~iI~----~e~l~~MK~gAIVI-NvgR  299 (436)
T 3h9u_A          266 EAHIFVTTTGNDDIIT----SEHFPRMRDDAIVC-NIGH  299 (436)
T ss_dssp             TCSEEEECSSCSCSBC----TTTGGGCCTTEEEE-ECSS
T ss_pred             hCCEEEECCCCcCccC----HHHHhhcCCCcEEE-EeCC
Confidence            9999998664322111    12234568888877 4443

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.23  E-value=3.1e-06  Score=77.36  Aligned_cols=97  Identities=22%  Similarity=0.300  Sum_probs=66.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.||.++|..+...|.+|++||+++.+...+           .+.|.             .. .++++ ++
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-----------~~~g~-------------~~-~~l~ell~  311 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-----------VMEGF-------------NV-VTLDEIVD  311 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-----------HTTTC-------------EE-CCHHHHTT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-----------HHcCC-------------Ee-cCHHHHHh
Confidence            4789999999999999999999999999999998764332           22332             22 35555 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhh
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLAS  130 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~  130 (297)
                      .||+|+.+.....-+.    ++.-+.++++++++....+   +....+.+
T Consensus       312 ~aDiVi~~~~t~~lI~----~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          312 KGDFFITCTGNVDVIK----LEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             TCSEEEECCSSSSSBC----HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             cCCEEEECCChhhhcC----HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            9999999963222111    2333457888887733332   23456655

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.23  E-value=3.9e-06  Score=73.68  Aligned_cols=100  Identities=10%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |..+..||+|||+|.||..++..|.+. +++|+ ++|+++++++.+.+          +.|..            ...++
T Consensus         1 M~m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~----------~~~~~------------~~~~~   58 (330)
T 3e9m_A            1 MSLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAK----------ELAIP------------VAYGS   58 (330)
T ss_dssp             --CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHH----------HTTCC------------CCBSS
T ss_pred             CCCCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH----------HcCCC------------ceeCC
Confidence            544567999999999999999999884 67776 78999987765521          11210            24566


Q ss_pred             ccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  ++|+|+.|+|...... .+...++.   ...+++-.+.+.+.+
T Consensus        59 ~~~ll~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~vl~EKP~~~~~~  105 (330)
T 3e9m_A           59 YEELCKDETIDIIYIPTYNQGHYS-AAKLALSQ---GKPVLLEKPFTLNAA  105 (330)
T ss_dssp             HHHHHHCTTCSEEEECCCGGGHHH-HHHHHHHT---TCCEEECSSCCSSHH
T ss_pred             HHHHhcCCCCCEEEEcCCCHHHHH-HHHHHHHC---CCeEEEeCCCCCCHH
Confidence            666 44  7999999999887532 22222322   234666555555553

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.22  E-value=3.2e-06  Score=71.82  Aligned_cols=66  Identities=24%  Similarity=0.352  Sum_probs=50.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCc
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      +|+|||+|.||.+++..|.+.|++|+++||++++.+.+.+.          .|.             . .+++++++++|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~----------~~~-------------~-~~~~~~~~~~D  173 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE----------FGL-------------R-AVPLEKAREAR  173 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------HTC-------------E-ECCGGGGGGCS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcc-------------c-hhhHhhccCCC
Confidence            89999999999999999999999999999999876654211          121             1 22333337899


Q ss_pred             EEEEeccccH
Q 022434           87 IIVEAIVESE   96 (297)
Q Consensus        87 ~Vi~~v~e~~   96 (297)
                      +||.|+|...
T Consensus       174 ivi~~tp~~~  183 (263)
T 2d5c_A          174 LLVNATRVGL  183 (263)
T ss_dssp             EEEECSSTTT
T ss_pred             EEEEccCCCC
Confidence            9999998653

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.21  E-value=3.8e-06  Score=77.14  Aligned_cols=86  Identities=28%  Similarity=0.353  Sum_probs=61.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.+|..+|..+...|.+|++||+++.+...+           ...|.             .+ .++++ ++
T Consensus       277 GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-----------~~~G~-------------~~-~~l~ell~  331 (494)
T 3d64_A          277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-----------AMEGY-------------RV-VTMEYAAD  331 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-----------HTTTC-------------EE-CCHHHHTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-----------HHcCC-------------Ee-CCHHHHHh
Confidence            4789999999999999999999999999999998754222           22232             22 35555 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .||+|+.++....-+.    ++.-+.++++++++..
T Consensus       332 ~aDiVi~~~~t~~lI~----~~~l~~MK~gAilINv  363 (494)
T 3d64_A          332 KADIFVTATGNYHVIN----HDHMKAMRHNAIVCNI  363 (494)
T ss_dssp             TCSEEEECSSSSCSBC----HHHHHHCCTTEEEEEC
T ss_pred             cCCEEEECCCcccccC----HHHHhhCCCCcEEEEc
Confidence            9999999984322121    2333467888888733

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.19  E-value=1.4e-05  Score=69.66  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE---ecCc
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC---TSNL   79 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   79 (297)
                      +||+|||+ |.+|.+++..|+..|  ++|+++|+++.  +....       . +....        ...++..   ++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~--~~~a~-------d-L~~~~--------~~~~l~~~~~t~d~   62 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAA-------D-LSHIE--------TRATVKGYLGPEQL   62 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHH-------H-HTTSS--------SSCEEEEEESGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc--HHHHH-------H-HhccC--------cCceEEEecCCCCH
Confidence            48999998 999999999999988  79999999971  11100       0 11111        1123444   2567


Q ss_pred             cc-cCCCcEEEEecccc--H------------HHHHHHHHHHHhhcCCCeEEE
Q 022434           80 KD-LHSADIIVEAIVES--E------------DVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~--~------------~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ +++||+||.+....  .            .+.+++.+.+.++++ +++++
T Consensus        63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~vi  114 (314)
T 1mld_A           63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMIC  114 (314)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEE
T ss_pred             HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEE
Confidence            75 89999999987321  1            345566667777774 44443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.18  E-value=4.9e-06  Score=76.56  Aligned_cols=84  Identities=27%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.+|..+|..+...|.+|+++|+++.+++.+           .+.|.             .. .++++ ++
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A-----------~~~Ga-------------~~-~~l~e~l~  328 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA-----------MMEGF-------------DV-VTVEEAIG  328 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EE-CCHHHHGG
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------EE-ecHHHHHh
Confidence            4789999999999999999999999999999999876654           34443             11 23333 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++|+||++++....+..    +.-+.++++++++
T Consensus       329 ~aDvVi~atgt~~~i~~----~~l~~mk~ggilv  358 (494)
T 3ce6_A          329 DADIVVTATGNKDIIML----EHIKAMKDHAILG  358 (494)
T ss_dssp             GCSEEEECSSSSCSBCH----HHHHHSCTTCEEE
T ss_pred             CCCEEEECCCCHHHHHH----HHHHhcCCCcEEE
Confidence            89999999875542222    2334567777766

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.18  E-value=6.8e-06  Score=72.01  Aligned_cols=94  Identities=20%  Similarity=0.218  Sum_probs=60.3

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE---ecC
Q 022434            5 MKVMGVVG-SGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC---TSN   78 (297)
Q Consensus         5 ~~~I~viG-~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (297)
                      .+||+|+| +|.+|.+++..|+..|  ++|+++|++++.. .+    .    . +.....        ..++..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~-~~----~----d-L~~~~~--------~~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPG-VT----A----D-ISHMDT--------GAVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHH-HH----H----H-HHTSCS--------SCEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHh-HH----H----H-hhcccc--------cceEEEEeCCCC
Confidence            46999999 7999999999999999  8999999987611 11    0    0 111110        012333   335


Q ss_pred             ccc-cCCCcEEEEeccccH--------------HHHHHHHHHHHhhcCCCeEEE
Q 022434           79 LKD-LHSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++ +++||+||.+.+...              ...+.+.+.+.+..+ +.+++
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~vi  122 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVN  122 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEE
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEE
Confidence            544 899999999874211              334455666777664 45444

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.17  E-value=9.7e-06  Score=72.02  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |+++..||+|||+|.||...+..+.+. +++|+ ++|+++++++.+           .+.|.             ...+|
T Consensus         1 M~m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a-----------~~~g~-------------~~~~~   56 (359)
T 3e18_A            1 MSLKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAA-----------AQKGL-------------KIYES   56 (359)
T ss_dssp             --CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH-----------HTTTC-------------CBCSC
T ss_pred             CCCCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-----------HhcCC-------------ceeCC
Confidence            544557999999999999999988876 67876 779999876532           12222             34567


Q ss_pred             ccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  ++|+|+.|+|...... .+...++.   ...+++--..+.+.+
T Consensus        57 ~~~ll~~~~~D~V~i~tp~~~h~~-~~~~al~a---GkhVl~EKP~a~~~~  103 (359)
T 3e18_A           57 YEAVLADEKVDAVLIATPNDSHKE-LAISALEA---GKHVVCEKPVTMTSE  103 (359)
T ss_dssp             HHHHHHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSCCSSHH
T ss_pred             HHHHhcCCCCCEEEEcCCcHHHHH-HHHHHHHC---CCCEEeeCCCcCCHH
Confidence            766 44  7899999999877532 22222322   334666555555543

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=98.16  E-value=2.6e-05  Score=70.42  Aligned_cols=73  Identities=11%  Similarity=0.139  Sum_probs=47.2

Q ss_pred             CcEEEEECCChh-HHHHHHHHHH--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVM--D---GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~--~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|.. +..+...|+.  .   +.+|+++|+++++++... .+.+   .+...          . .++..++|
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~---~~~~~----------~-~~v~~t~d   66 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVK---RLVKD----------R-FKVLISDT   66 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHH---HHHTT----------S-SEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHH---HHhhC----------C-eEEEEeCC
Confidence            469999999985 2222234454  3   568999999998877532 2111   11111          1 34566678


Q ss_pred             c-cccCCCcEEEEec
Q 022434           79 L-KDLHSADIIVEAI   92 (297)
Q Consensus        79 ~-~~~~~aD~Vi~~v   92 (297)
                      + +++++||+||.+.
T Consensus        67 ~~~al~~AD~Viita   81 (417)
T 1up7_A           67 FEGAVVDAKYVIFQF   81 (417)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             HHHHhCCCCEEEEcC
Confidence            7 5699999999988

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.15  E-value=2.8e-06  Score=70.91  Aligned_cols=60  Identities=20%  Similarity=0.400  Sum_probs=47.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L-   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-   82 (297)
                      +||+|||+|.||..++..+.+.|++| .++|+++. .+                             .  ..+++++ + 
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~-----------------------------~--~~~~~~~l~~   48 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HE-----------------------------K--MVRGIDEFLQ   48 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CT-----------------------------T--EESSHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hh-----------------------------h--hcCCHHHHhc
Confidence            38999999999999999999999997 69998842 10                             0  3455655 5 


Q ss_pred             CCCcEEEEeccccHH
Q 022434           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .++|+|++|+|.+..
T Consensus        49 ~~~DvVv~~~~~~~~   63 (236)
T 2dc1_A           49 REMDVAVEAASQQAV   63 (236)
T ss_dssp             SCCSEEEECSCHHHH
T ss_pred             CCCCEEEECCCHHHH
Confidence            589999999997643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.15  E-value=7.2e-06  Score=73.78  Aligned_cols=90  Identities=27%  Similarity=0.317  Sum_probs=63.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.+|..+|..+...|.+|+++|+++.....+           ...|.             .+ .++++ ++
T Consensus       247 GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-----------~~~G~-------------~v-v~LeElL~  301 (464)
T 3n58_A          247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-----------AMDGF-------------EV-VTLDDAAS  301 (464)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHTTC-------------EE-CCHHHHGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-----------HhcCc-------------ee-ccHHHHHh
Confidence            4789999999999999999999999999999998754332           22332             22 34555 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      .+|+|+.+.....-+..    +.-..++++++++ |++...
T Consensus       302 ~ADIVv~atgt~~lI~~----e~l~~MK~GAILI-NvGRgd  337 (464)
T 3n58_A          302 TADIVVTTTGNKDVITI----DHMRKMKDMCIVG-NIGHFD  337 (464)
T ss_dssp             GCSEEEECCSSSSSBCH----HHHHHSCTTEEEE-ECSSST
T ss_pred             hCCEEEECCCCccccCH----HHHhcCCCCeEEE-EcCCCC
Confidence            99999998653321122    2234568888887 665443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.14  E-value=4.9e-06  Score=70.58  Aligned_cols=67  Identities=19%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .+++.|||+|.||++++..|++.|.+|++++|++++.+.+.           +.|.             .. .+++++.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-----------~~~~-------------~~-~~~~~l~~  172 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-----------RLGC-------------DC-FMEPPKSA  172 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-----------HHTC-------------EE-ESSCCSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-------------eE-ecHHHhcc
Confidence            36899999999999999999999999999999998877652           1121             12 13444558


Q ss_pred             CcEEEEeccccH
Q 022434           85 ADIIVEAIVESE   96 (297)
Q Consensus        85 aD~Vi~~v~e~~   96 (297)
                      +|+||.|+|-..
T Consensus       173 ~DiVInaTp~Gm  184 (269)
T 3phh_A          173 FDLIINATSASL  184 (269)
T ss_dssp             CSEEEECCTTCC
T ss_pred             CCEEEEcccCCC
Confidence            999999988543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.14  E-value=1.1e-05  Score=72.16  Aligned_cols=154  Identities=18%  Similarity=0.196  Sum_probs=95.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -++|+|||.|..|.+-|.+|..+|.+|++--|..+..+..     +.+++..+.|.             .+.+-.++++.
T Consensus        37 gK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~Gf-------------~v~~~~eA~~~   98 (491)
T 3ulk_A           37 GKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATENGF-------------KVGTYEELIPQ   98 (491)
T ss_dssp             TSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHTTC-------------EEEEHHHHGGG
T ss_pred             CCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHCCC-------------EecCHHHHHHh
Confidence            3799999999999999999999999999877643311110     11222355554             45544455899


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCC----------Cc-eE
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL----------MK-LV  153 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~----------~~-~v  153 (297)
                      ||+|+..+|+..  ...++++|.+.++++..+.. +.+..+..-.-..+....++-+-|-.|-+.          .| ++
T Consensus        99 ADvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~f-aHGFnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~li  175 (491)
T 3ulk_A           99 ADLVINLTPDKQ--HSDVVRTVQPLMKDGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLI  175 (491)
T ss_dssp             CSEEEECSCGGG--HHHHHHHHGGGSCTTCEEEE-SSCHHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEeCChhh--HHHHHHHHHhhCCCCCEEEe-cCcccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEE
Confidence            999999999876  45678899999999887764 334443211111111234444444444321          11 23


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434          154 EVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~  179 (297)
                      -|-.-...+-.+.+.+..+...+|..
T Consensus       176 AVhqeqD~sG~a~~~AlayA~aiG~~  201 (491)
T 3ulk_A          176 AVHPENDPKGEGMAIAKAWAAATGGH  201 (491)
T ss_dssp             EECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred             EEEeCCCCchhHHHHHHHHHHhcCCC
Confidence            33211223445667777888888853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.10  E-value=2e-06  Score=76.30  Aligned_cols=40  Identities=18%  Similarity=0.082  Sum_probs=36.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|+|||+|.||..+|..+...|.+|+++|+++++++.+
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  223 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQV  223 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3689999999999999999999999999999999887766

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.10  E-value=4.6e-05  Score=68.84  Aligned_cols=92  Identities=17%  Similarity=0.248  Sum_probs=62.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC---c--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN---L--   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~--   79 (297)
                      .++|.|+|+|.+|..++..|...|++|+++|+|+++++.+           .+.|..            .+..|   .  
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~-----------~~~g~~------------vi~GDat~~~~   60 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL-----------RKFGMK------------VFYGDATRMDL   60 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH-----------HHTTCC------------CEESCTTCHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HhCCCe------------EEEcCCCCHHH
Confidence            4579999999999999999999999999999999988766           233421            12112   1  


Q ss_pred             -c-c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           80 -K-D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 -~-~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                       + . +++||+||.+++++.. ...+...+....+.-.||+...
T Consensus        61 L~~agi~~A~~viv~~~~~~~-n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           61 LESAGAAKAEVLINAIDDPQT-NLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHTTTTTCSEEEECCSSHHH-HHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHhcCCCccCEEEECCCChHH-HHHHHHHHHHhCCCCeEEEEEC
Confidence             1 2 6789999999987653 2233333444443335665433

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.09  E-value=2.2e-05  Score=68.80  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++.+.+          +.|             +. .+++++ 
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~----------~~~-------------~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAG----------AYG-------------CE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTT-------------CE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHH----------HhC-------------CC-cCCHHHH
Confidence            36899999999999999999885 78876 78999988765521          112             13 566665 


Q ss_pred             cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  ++|+|+.|+|...... .+...++.   ...+++..+.+.+..
T Consensus        59 l~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~v~~EKP~~~~~~  101 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTHAD-LIERFARA---GKAIFCEKPIDLDAE  101 (331)
T ss_dssp             HHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEECSCSCSSHH
T ss_pred             hcCCCCCEEEEeCCchhHHH-HHHHHHHc---CCcEEEecCCCCCHH
Confidence            44  7999999999877532 22222322   334666555555554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.09  E-value=1.2e-05  Score=70.23  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=60.4

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEEKMKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |+.+..+|+|||+|.||.. ++..+.+ .|++++ ++|+++++.+.+.+.          .|.             ...+
T Consensus         1 m~m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g~-------------~~~~   57 (319)
T 1tlt_A            1 MSLKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WRI-------------PYAD   57 (319)
T ss_dssp             ----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HTC-------------CBCS
T ss_pred             CCCCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cCC-------------CccC
Confidence            5555679999999999997 8887776 477876 899999876654211          121             1344


Q ss_pred             Ccccc-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           78 NLKDL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        78 ~~~~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++++ .++|+|+.++|..... ..+...++.   ...+++.-+.+.+.+
T Consensus        58 ~~~~l~~~~D~V~i~tp~~~h~-~~~~~al~~---G~~v~~eKP~~~~~~  103 (319)
T 1tlt_A           58 SLSSLAASCDAVFVHSSTASHF-DVVSTLLNA---GVHVCVDKPLAENLR  103 (319)
T ss_dssp             SHHHHHTTCSEEEECSCTTHHH-HHHHHHHHT---TCEEEEESSSCSSHH
T ss_pred             cHHHhhcCCCEEEEeCCchhHH-HHHHHHHHc---CCeEEEeCCCCCCHH
Confidence            55543 6799999999987652 222222322   233555444455443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.09  E-value=1.5e-05  Score=70.54  Aligned_cols=98  Identities=11%  Similarity=0.119  Sum_probs=65.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |++ ..||+|||+|.||..++..+.+. |++|+ ++|+++++++.+.+.          .|.             ...++
T Consensus         2 M~~-~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g~-------------~~~~~   57 (354)
T 3db2_A            2 MYN-PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----------YNC-------------AGDAT   57 (354)
T ss_dssp             CCC-CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----------HTC-------------CCCSS
T ss_pred             CCC-cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------cCC-------------CCcCC
Confidence            543 46899999999999999999887 78865 889999887665221          122             23466


Q ss_pred             ccc-c--CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           79 LKD-L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ +  .++|+|+.|+|...... .+...++.   ...+++....+...+
T Consensus        58 ~~~~l~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~vl~EKP~~~~~~  104 (354)
T 3db2_A           58 MEALLAREDVEMVIITVPNDKHAE-VIEQCARS---GKHIYVEKPISVSLD  104 (354)
T ss_dssp             HHHHHHCSSCCEEEECSCTTSHHH-HHHHHHHT---TCEEEEESSSCSSHH
T ss_pred             HHHHhcCCCCCEEEEeCChHHHHH-HHHHHHHc---CCEEEEccCCCCCHH
Confidence            666 4  56999999999877532 22222322   334666555555553

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.09  E-value=1.1e-05  Score=72.43  Aligned_cols=88  Identities=24%  Similarity=0.367  Sum_probs=61.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+           ...|.             . ..++++ ++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-----------~~~G~-------------~-v~~Leeal~  274 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-----------CMDGF-------------R-LVKLNEVIR  274 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------E-ECCHHHHTT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-----------HHcCC-------------E-eccHHHHHh
Confidence            4789999999999999999999999999999998754433           22332             1 234555 88


Q ss_pred             CCcEEEEeccccHH-HHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           84 SADIIVEAIVESED-VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      .+|+||.| +.... +..+.+    ..++++++++ |++..
T Consensus       275 ~ADIVi~a-tgt~~lI~~e~l----~~MK~gailI-Nvgrg  309 (435)
T 3gvp_A          275 QVDIVITC-TGNKNVVTREHL----DRMKNSCIVC-NMGHS  309 (435)
T ss_dssp             TCSEEEEC-SSCSCSBCHHHH----HHSCTTEEEE-ECSST
T ss_pred             cCCEEEEC-CCCcccCCHHHH----HhcCCCcEEE-EecCC
Confidence            99999997 33222 122233    3567788776 55443

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.08  E-value=2e-05  Score=65.92  Aligned_cols=86  Identities=20%  Similarity=0.298  Sum_probs=56.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++||+|+|+|.||+.++..+.+.+++++ ++|++++.                ..|             +...++++++.
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~~g-------------v~v~~dl~~l~   53 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------TTP-------------YQQYQHIADVK   53 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------------------CC-------------SCBCSCTTTCT
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------cCC-------------CceeCCHHHHh
Confidence            5799999999999999999999877765 47887651                112             23567777733


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++|+||++...+.     +...+.  +..+.-+++.|.+++.+
T Consensus        54 ~~DVvIDft~p~a-----~~~~~~--l~~g~~vVigTTG~s~e   89 (243)
T 3qy9_A           54 GADVAIDFSNPNL-----LFPLLD--EDFHLPLVVATTGEKEK   89 (243)
T ss_dssp             TCSEEEECSCHHH-----HHHHHT--SCCCCCEEECCCSSHHH
T ss_pred             CCCEEEEeCChHH-----HHHHHH--HhcCCceEeCCCCCCHH
Confidence            9999997664222     223333  44444334456677654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.07  E-value=0.00012  Score=56.48  Aligned_cols=39  Identities=13%  Similarity=0.067  Sum_probs=34.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~   44 (297)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++ +++.+.+
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~   43 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL   43 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHH
Confidence            57999999999999999999999999999998 4544443

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=98.06  E-value=7.5e-06  Score=71.86  Aligned_cols=112  Identities=23%  Similarity=0.332  Sum_probs=76.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||.|.+|+.+|..+..-|.+|..||+.+....             .+.+.              ...++++ ++.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~-------------~~~~~--------------~~~~l~ell~~  194 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDL-------------KEKGC--------------VYTSLDELLKE  194 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-------------HHTTC--------------EECCHHHHHHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccchhh-------------hhcCc--------------eecCHHHHHhh
Confidence            6899999999999999999999999999998754221             12221              2345666 889


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+..+|-..+.+.-+-++.-+.++++++++ |++.-.   -..+.+.+... -.-.++..|.
T Consensus       195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~~g~i~gA~LDV~~  258 (334)
T 3kb6_A          195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQRGKFSGLGLDVFE  258 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCEEEEEESCCT
T ss_pred             CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHHhCCceEEEEeCCC
Confidence            999999999766533322233445678888887 666433   35677776432 2234555554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.05  E-value=3.2e-06  Score=75.61  Aligned_cols=39  Identities=23%  Similarity=0.161  Sum_probs=36.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|+|||+|.+|..+|..+...|.+|+++|+++++++.+
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  229 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV  229 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999999887765

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.05  E-value=3.6e-06  Score=71.02  Aligned_cols=38  Identities=21%  Similarity=0.369  Sum_probs=34.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      +|+|||+|.||++++..|++.|. +|+++||++++++.+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            79999999999999999999998 999999999876543

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.03  E-value=2.5e-05  Score=67.77  Aligned_cols=95  Identities=7%  Similarity=0.059  Sum_probs=63.1

Q ss_pred             CcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||.. ++..+.+ .+++++ ++|+++++++.+.+.          .|.             ...+++++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~~~-------------~~~~~~~~   62 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD----------YRI-------------MPFDSIES   62 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH----------HTC-------------CBCSCHHH
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cCC-------------CCcCCHHH
Confidence            468999999999996 8887876 467877 899999987765221          122             12566666


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++++|+|+.|+|...... .+...++.   ...+++.-..+.+.+
T Consensus        63 ll~~~D~V~i~tp~~~h~~-~~~~al~~---gk~vl~EKP~~~~~~  104 (308)
T 3uuw_A           63 LAKKCDCIFLHSSTETHYE-IIKILLNL---GVHVYVDKPLASTVS  104 (308)
T ss_dssp             HHTTCSEEEECCCGGGHHH-HHHHHHHT---TCEEEECSSSSSSHH
T ss_pred             HHhcCCEEEEeCCcHhHHH-HHHHHHHC---CCcEEEcCCCCCCHH
Confidence             669999999999887532 22222322   234665445555553

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.01  E-value=5.3e-06  Score=71.74  Aligned_cols=40  Identities=18%  Similarity=0.126  Sum_probs=36.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .++|.|||+|.||++++..|++.|+ +|+++||++++++.+
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l  181 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL  181 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            4689999999999999999999998 999999999887665

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.01  E-value=1.2e-05  Score=71.06  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=54.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||..++..|..  ...+|.+|||++++.+++.+.+..      ..|.           .+...++.++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g~-----------~~~~~~~~~e  190 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSGL-----------TIRRASSVAE  190 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTTC-----------EEEECSSHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccCc-----------eEEEeCCHHH
Confidence            35789999999999999988754  346899999999988776433210      0011           1234566665


Q ss_pred             -cCCCcEEEEecccc
Q 022434           82 -LHSADIIVEAIVES   95 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~   95 (297)
                       ++++|+||.|+|..
T Consensus       191 av~~aDiVi~aTps~  205 (350)
T 1x7d_A          191 AVKGVDIITTVTADK  205 (350)
T ss_dssp             HHTTCSEEEECCCCS
T ss_pred             HHhcCCEEEEeccCC
Confidence             78999999999975

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=98.01  E-value=2.8e-05  Score=71.45  Aligned_cols=75  Identities=16%  Similarity=0.290  Sum_probs=50.5

Q ss_pred             cEEEEECCChhHHHH--HHHHHH----C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            6 KVMGVVGSGQMGSGI--AQLGVM----D--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~I~viG~G~mG~~i--A~~l~~----~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +||+|||+|..|...  ...++.    .  +.+|+++|+++++++.....+++..+.   .|         ..-++..++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~---~~---------~~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEE---LN---------SPVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHH---HT---------CCCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHH---cC---------CCeEEEEeC
Confidence            489999999987553  222332    2  347999999999887654444443321   12         123467788


Q ss_pred             Cccc-cCCCcEEEEec
Q 022434           78 NLKD-LHSADIIVEAI   92 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v   92 (297)
                      |..+ +++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            8866 89999999885

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.00  E-value=1.1e-05  Score=70.64  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |..++.||+|||+|.||..++..+.+. +++|+ ++|+++++++.+           .+...           --...++
T Consensus         1 M~m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~-----------a~~~~-----------~~~~~~~   58 (329)
T 3evn_A            1 MSLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAF-----------ANKYH-----------LPKAYDK   58 (329)
T ss_dssp             ----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------CCC-----------CSCEESC
T ss_pred             CCCCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-----------HHHcC-----------CCcccCC
Confidence            654567999999999999999988775 45655 789998765543           11111           0125677


Q ss_pred             ccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  ++|+|+.|+|...... .+...++.   ...+++--..+...+
T Consensus        59 ~~~ll~~~~~D~V~i~tp~~~h~~-~~~~al~a---Gk~Vl~EKP~a~~~~  105 (329)
T 3evn_A           59 LEDMLADESIDVIYVATINQDHYK-VAKAALLA---GKHVLVEKPFTLTYD  105 (329)
T ss_dssp             HHHHHTCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSCCSSHH
T ss_pred             HHHHhcCCCCCEEEECCCcHHHHH-HHHHHHHC---CCeEEEccCCcCCHH
Confidence            776 55  7999999999877532 22222322   334666555555553

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.99  E-value=4.5e-05  Score=67.41  Aligned_cols=95  Identities=14%  Similarity=0.079  Sum_probs=63.0

Q ss_pred             CcEEEEECCChhHH-HHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGS-GIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||. .++..|.+. +++|+ ++|+++++++.+.+.          .|.             ...+++++
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g~-------------~~~~~~~~   83 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------FGG-------------EPVEGYPA   83 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------HCS-------------EEEESHHH
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------cCC-------------CCcCCHHH
Confidence            46899999999998 788888887 78876 889999877655221          122             33467766


Q ss_pred             -cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  +.|+|+.|+|...... .+...++.   ...+++--..+...+
T Consensus        84 ll~~~~~D~V~i~tp~~~h~~-~~~~al~a---Gk~Vl~EKP~a~~~~  127 (350)
T 3rc1_A           84 LLERDDVDAVYVPLPAVLHAE-WIDRALRA---GKHVLAEKPLTTDRP  127 (350)
T ss_dssp             HHTCTTCSEEEECCCGGGHHH-HHHHHHHT---TCEEEEESSSCSSHH
T ss_pred             HhcCCCCCEEEECCCcHHHHH-HHHHHHHC---CCcEEEeCCCCCCHH
Confidence             44  5899999999887632 22222322   234666445455543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.99  E-value=1.5e-05  Score=69.66  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=53.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||..++..|+.  ...+|.+|||++++++++.+.+..       .+ +          .+. .+++++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e  184 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEE  184 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHH
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHH
Confidence            35789999999999999999887  346899999999988877543221       11 1          123 456655


Q ss_pred             -cCCCcEEEEecccc
Q 022434           82 -LHSADIIVEAIVES   95 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~   95 (297)
                       + ++|+||.|+|..
T Consensus       185 ~v-~aDvVi~aTp~~  198 (322)
T 1omo_A          185 AS-RCDVLVTTTPSR  198 (322)
T ss_dssp             HT-SSSEEEECCCCS
T ss_pred             Hh-CCCEEEEeeCCC
Confidence             7 999999999864

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.99  E-value=2.9e-05  Score=68.49  Aligned_cols=95  Identities=14%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.||..++..|.+. +++++ ++|+++++++.+.+.          .|.            ....+++++ +
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------LGV------------EKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------HTC------------SEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------hCC------------CceeCCHHHHh
Confidence            5899999999999999998875 67766 789999887665221          121            135677776 5


Q ss_pred             C--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           83 H--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +  ++|+|+.|+|..... ..+...++.   ...+++--..+.+..
T Consensus        61 ~~~~~D~V~i~tp~~~h~-~~~~~al~~---gk~v~~EKP~~~~~~  102 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTHS-ELVIACAKA---KKHVFCEKPLSLNLA  102 (344)
T ss_dssp             HCTTCCEEEECSCGGGHH-HHHHHHHHT---TCEEEEESCSCSCHH
T ss_pred             cCCCCCEEEEcCCCcchH-HHHHHHHhc---CCeEEEECCCCCCHH
Confidence            4  799999999987653 222222322   234666555455553

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.99  E-value=2.4e-05  Score=67.90  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=59.2

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE---ecC
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMD-G--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC---TSN   78 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~-G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (297)
                      +||+||| +|.+|.+++..|+.. +  .+++++|+++ +++..      .++  .+...        ...++..   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~------a~D--l~~~~--------~~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGV------AVD--LSHIP--------TAVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHH------HHH--HHTSC--------SSEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhH------HHH--hhCCC--------CCceEEEecCCCc
Confidence            4899999 799999999999875 5  5899999987 33211      011  11111        0112222   245


Q ss_pred             ccccCCCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           79 LKDLHSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ++++++||+||.+...+              ..+.+++...+.++++ +++++.-|
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvvt  118 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIIT  118 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECS
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEec
Confidence            66799999999986321              2234445556777765 55444333

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.98  E-value=2.3e-05  Score=68.26  Aligned_cols=91  Identities=13%  Similarity=0.242  Sum_probs=60.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..+|+|||+|.||..++..|.+. ++++ .++|+++++++.+           .+              .+...+++++ 
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~-----------~~--------------~~~~~~~~~~~   64 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALV-----------PP--------------GCVIESDWRSV   64 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTC-----------CT--------------TCEEESSTHHH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHH-----------Hh--------------hCcccCCHHHH
Confidence            46899999999999999999885 6775 4899998765432           00              0345667766 


Q ss_pred             cC--CCcEEEEeccccHHHHHHHHHH-HHhhcCCCeEEEecCCCCcH
Q 022434           82 LH--SADIIVEAIVESEDVKKKLFSE-LDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~-l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++  ++|+|+.|+|.....  ++..+ ++.   ...+++....+.+.
T Consensus        65 l~~~~~D~V~i~tp~~~h~--~~~~~al~~---Gk~v~~eKP~~~~~  106 (315)
T 3c1a_A           65 VSAPEVEAVIIATPPATHA--EITLAAIAS---GKAVLVEKPLTLDL  106 (315)
T ss_dssp             HTCTTCCEEEEESCGGGHH--HHHHHHHHT---TCEEEEESSSCSCH
T ss_pred             hhCCCCCEEEEeCChHHHH--HHHHHHHHC---CCcEEEcCCCcCCH
Confidence            53  799999999987652  22222 222   23456544555554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.97  E-value=9.5e-06  Score=70.59  Aligned_cols=92  Identities=24%  Similarity=0.261  Sum_probs=60.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||..++..|...  ..+|.+|||+  +.+++.+.+++.      .|.           .+... ++++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~------~g~-----------~~~~~-~~~e  179 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRR------CGV-----------PARMA-APAD  179 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHH------HTS-----------CEEEC-CHHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHh------cCC-----------eEEEe-CHHH
Confidence            357899999999999999998763  4689999999  444443332211      121           12344 6665


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+||.|+|....    ++.  .+++++++.|....|
T Consensus       180 av~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          180 IAAQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGS  214 (313)
T ss_dssp             HHHHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCC
T ss_pred             HHhhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCC
Confidence             7899999999986432    221  245667776654443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.97  E-value=7.2e-05  Score=65.84  Aligned_cols=72  Identities=22%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHH-H-CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGV-M-DGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~-~-~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +..+|+|||+|.||..++..+. + .|++| .++|+++++++.+.+          +.|.            ....++++
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g~------------~~~~~~~~   64 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELGV------------ETTYTNYK   64 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTCC------------SEEESCHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhCC------------CcccCCHH
Confidence            3568999999999999999988 4 47775 578999987765411          1121            03456666


Q ss_pred             c-cC--CCcEEEEeccccHH
Q 022434           81 D-LH--SADIIVEAIVESED   97 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~   97 (297)
                      + ++  ++|+|++|+|....
T Consensus        65 ~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHhH
Confidence            6 44  69999999998765

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.96  E-value=1.2e-05  Score=68.60  Aligned_cols=72  Identities=10%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL--   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--   82 (297)
                      .++|.|+|+|.||++++..|++.|.+|++++|++++++.+.+.+.       ..+            .+.. .+.+++  
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~-------~~~------------~~~~-~~~~~~~~  178 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQA-VSMDSIPL  178 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEE-EEGGGCCC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcc-------ccC------------CeEE-eeHHHhcc
Confidence            468999999999999999999999999999999988776533211       001            1111 223344  


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .++|+||.++|...
T Consensus       179 ~~~DivIn~t~~~~  192 (272)
T 1p77_A          179 QTYDLVINATSAGL  192 (272)
T ss_dssp             SCCSEEEECCCC--
T ss_pred             CCCCEEEECCCCCC
Confidence            38999999998654

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.94  E-value=2.3e-05  Score=69.52  Aligned_cols=100  Identities=14%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEEKMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |+++..||+|||+|.||.. ++..+.+. +++|+ ++|+++++++.+           .+.           .......+
T Consensus         1 M~M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-----------a~~-----------~~~~~~~~   58 (359)
T 3m2t_A            1 MSLSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRV-----------HRF-----------ISDIPVLD   58 (359)
T ss_dssp             --CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGG-----------GGT-----------SCSCCEES
T ss_pred             CCCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-----------HHh-----------cCCCcccC
Confidence            5445579999999999985 88888775 67876 889999876654           111           11224567


Q ss_pred             Cccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           78 NLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      |+++ ++  +.|+|+.|+|.....  ++..+..+  ....+++--..+.+..
T Consensus        59 ~~~~ll~~~~vD~V~i~tp~~~H~--~~~~~al~--aGkhVl~EKPla~~~~  106 (359)
T 3m2t_A           59 NVPAMLNQVPLDAVVMAGPPQLHF--EMGLLAMS--KGVNVFVEKPPCATLE  106 (359)
T ss_dssp             SHHHHHHHSCCSEEEECSCHHHHH--HHHHHHHH--TTCEEEECSCSCSSHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHHH--HHHHHHHH--CCCeEEEECCCcCCHH
Confidence            7777 44  569999999976653  22222211  2334666444455543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.93  E-value=6.2e-05  Score=65.71  Aligned_cols=95  Identities=12%  Similarity=0.089  Sum_probs=59.6

Q ss_pred             cEEEEECCChhHH-HHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc-
Q 022434            6 KVMGVVGSGQMGS-GIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL-   82 (297)
Q Consensus         6 ~~I~viG~G~mG~-~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-   82 (297)
                      .||+|||+|.||. .++..|.+. +++|+++|+++++++.+.+          +.|.-          . .+.++.+.+ 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~----------~~g~~----------~-~~~~~~~~l~   61 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLAT----------RYRVS----------A-TCTDYRDVLQ   61 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHH----------HTTCC----------C-CCSSTTGGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH----------HcCCC----------c-cccCHHHHhh
Confidence            5899999999998 488888764 7888899999988765521          11210          0 123333445 


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .++|+|+.|+|..... ..+...++.   ...+++....+.+.
T Consensus        62 ~~~D~V~i~tp~~~h~-~~~~~al~~---Gk~V~~EKP~~~~~  100 (323)
T 1xea_A           62 YGVDAVMIHAATDVHS-TLAAFFLHL---GIPTFVDKPLAASA  100 (323)
T ss_dssp             GCCSEEEECSCGGGHH-HHHHHHHHT---TCCEEEESCSCSSH
T ss_pred             cCCCEEEEECCchhHH-HHHHHHHHC---CCeEEEeCCCcCCH
Confidence            6799999999977642 222222332   22355544444444

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.93  E-value=0.00021  Score=62.16  Aligned_cols=102  Identities=16%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC--
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN--   78 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--   78 (297)
                      +||+|+|+ |.+|..++..|+..|+  ++.++|+  ++++++.....+.+.. .  ..+         ..-.+...++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~--~~~---------~~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-A--GTR---------SDANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-T--TSC---------CCCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-H--hcC---------CCeEEEeCCcch
Confidence            48999999 9999999999998885  6999999  7655443222222110 0  000         0112333333  


Q ss_pred             ccccCCCcEEEEecc--c------------cHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           79 LKDLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .+++++||+||.+..  .            +..+.+.+.+.+.+.+  +++++..|+
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SN  123 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITN  123 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSS
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecC
Confidence            556999999998762  1            1123345555677766  555543343

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.90  E-value=3.8e-05  Score=68.01  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|+|+|+|.||..+|..|...|++|+++|+++++++..
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            4789999999999999999999999999999998876654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.88  E-value=3.1e-05  Score=66.01  Aligned_cols=40  Identities=10%  Similarity=0.019  Sum_probs=36.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.||++++..|++.|.+|++++|++++++.+
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l  158 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL  158 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            4689999999999999999999999999999999887665

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.87  E-value=9.8e-05  Score=65.04  Aligned_cols=96  Identities=11%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             cEEEEECCChhHHHHHHHHH-H-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSGIAQLGV-M-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||..++..+. . .+++++ ++|+++++++.+.+          +.|.           .....+++++ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~----------~~g~-----------~~~~~~~~~~l   61 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVE----------QYQL-----------NATVYPNDDSL   61 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHH----------HTTC-----------CCEEESSHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-----------CCeeeCCHHHH
Confidence            58999999999999999998 4 477866 78999988766521          1121           1246677776 


Q ss_pred             cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  ++|+|+.|+|...... .+...++.   ...+++--..+...+
T Consensus        62 l~~~~~D~V~i~tp~~~h~~-~~~~al~~---Gk~vl~EKP~a~~~~  104 (344)
T 3mz0_A           62 LADENVDAVLVTSWGPAHES-SVLKAIKA---QKYVFCEKPLATTAE  104 (344)
T ss_dssp             HHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEECSCSCSSHH
T ss_pred             hcCCCCCEEEECCCchhHHH-HHHHHHHC---CCcEEEcCCCCCCHH
Confidence            44  4999999999877532 22222222   234665444455543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.87  E-value=3.1e-05  Score=66.29  Aligned_cols=72  Identities=11%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -+++.|+|+|.||++++..|++.|. +|++++|++++.+.+.+.+.       ..+            .+... ++++ .
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~------------~~~~~-~~~~l~  185 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA-------AYG------------EVKAQ-AFEQLK  185 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEE-EGGGCC
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-------ccC------------CeeEe-eHHHhc
Confidence            4689999999999999999999996 99999999988776533321       111            11221 2333 2


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      +++|+||.++|...
T Consensus       186 ~~aDiIInaTp~gm  199 (281)
T 3o8q_A          186 QSYDVIINSTSASL  199 (281)
T ss_dssp             SCEEEEEECSCCCC
T ss_pred             CCCCEEEEcCcCCC
Confidence            67899999888654

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.87  E-value=9.8e-05  Score=64.58  Aligned_cols=69  Identities=10%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             EEEEECCChhHHHH-HHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            7 VMGVVGSGQMGSGI-AQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         7 ~I~viG~G~mG~~i-A~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ||+|||+|.||..+ +..+.+.|++|+ ++|+++++.+.+.+          +.|..            ...+++++ ++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~----------~~g~~------------~~~~~~~~~l~   59 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYAT----------ENGIG------------KSVTSVEELVG   59 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HTTCS------------CCBSCHHHHHT
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHH----------HcCCC------------cccCCHHHHhc
Confidence            79999999999998 777777788866 88999987765421          12220            13456665 44


Q ss_pred             --CCcEEEEeccccHH
Q 022434           84 --SADIIVEAIVESED   97 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~   97 (297)
                        ++|+|+.++|....
T Consensus        60 ~~~~D~V~i~tp~~~h   75 (332)
T 2glx_A           60 DPDVDAVYVSTTNELH   75 (332)
T ss_dssp             CTTCCEEEECSCGGGH
T ss_pred             CCCCCEEEEeCChhHh
Confidence              59999999998765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.85  E-value=8.9e-06  Score=72.43  Aligned_cols=73  Identities=21%  Similarity=0.317  Sum_probs=50.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecC-
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSN-   78 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~-   78 (297)
                      |+-+.|||.|+|+|.+|+.+|..|++ .++|++.|++.++++++.+            ..          ..+.. .+| 
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~------------~~----------~~~~~d~~d~   68 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE------------FA----------TPLKVDASNF   68 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT------------TS----------EEEECCTTCH
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc------------cC----------CcEEEecCCH
Confidence            44456799999999999999998875 5899999999988776511            00          00111 122 


Q ss_pred             --ccc-cCCCcEEEEeccccH
Q 022434           79 --LKD-LHSADIIVEAIVESE   96 (297)
Q Consensus        79 --~~~-~~~aD~Vi~~v~e~~   96 (297)
                        +.+ ++++|+||.|+|...
T Consensus        69 ~~l~~~~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           69 DKLVEVMKEFELVIGALPGFL   89 (365)
T ss_dssp             HHHHHHHTTCSEEEECCCGGG
T ss_pred             HHHHHHHhCCCEEEEecCCcc
Confidence              223 689999999998764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.85  E-value=5.5e-06  Score=74.10  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=36.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|+|+|+|.+|..+|..+...|.+|+++|+++++++.+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~  207 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL  207 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            3689999999999999999999999999999999887665

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.84  E-value=6.1e-05  Score=64.08  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|.|||+|.||++++..|+..|. +|++++|+.++.+.+.+.+          +.             .+..+.. +.+
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~~-------------~~~~~~~-~~~  175 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------GY-------------AYINSLE-NQQ  175 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------TC-------------EEESCCT-TCC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC-------------ccchhhh-ccc
Confidence            689999999999999999999997 8999999998876653221          11             1222222 467


Q ss_pred             CcEEEEeccccH
Q 022434           85 ADIIVEAIVESE   96 (297)
Q Consensus        85 aD~Vi~~v~e~~   96 (297)
                      +|+||.++|...
T Consensus       176 ~DivInaTp~gm  187 (271)
T 1npy_A          176 ADILVNVTSIGM  187 (271)
T ss_dssp             CSEEEECSSTTC
T ss_pred             CCEEEECCCCCc
Confidence            999999998544

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.82  E-value=1.6e-05  Score=70.93  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=36.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|+|+|.+|..++..+...|++|+++|+++++++.+
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~  205 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL  205 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999877654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.80  E-value=5.2e-05  Score=64.96  Aligned_cols=44  Identities=23%  Similarity=0.338  Sum_probs=38.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~   48 (297)
                      .+++.|+|+|.+|++++..|+..|. +|++++|++++.+.+.+.+
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            4689999999999999999999998 6999999999887765444

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.79  E-value=0.00014  Score=64.46  Aligned_cols=97  Identities=12%  Similarity=0.217  Sum_probs=64.0

Q ss_pred             CcEEEEECCChhHHHHHHHHH-H-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGV-M-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||..++..+. . .|++|+ ++|+++++++.+.+.          .|.           .....+++++
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~~~   81 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------YAI-----------EAKDYNDYHD   81 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------HTC-----------CCEEESSHHH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------hCC-----------CCeeeCCHHH
Confidence            358999999999999999998 4 477866 789999887665221          121           1145677776


Q ss_pred             -cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  +.|+|+.|+|..... ..+...++.   ...+++--..+...+
T Consensus        82 ll~~~~~D~V~i~tp~~~h~-~~~~~al~a---Gk~Vl~EKPla~~~~  125 (357)
T 3ec7_A           82 LINDKDVEVVIITASNEAHA-DVAVAALNA---NKYVFCEKPLAVTAA  125 (357)
T ss_dssp             HHHCTTCCEEEECSCGGGHH-HHHHHHHHT---TCEEEEESSSCSSHH
T ss_pred             HhcCCCCCEEEEcCCcHHHH-HHHHHHHHC---CCCEEeecCccCCHH
Confidence             44  589999999987753 222222322   234666555555553

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.78  E-value=0.00011  Score=67.03  Aligned_cols=86  Identities=28%  Similarity=0.315  Sum_probs=60.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|+|+|.+|.++|..|+..|.+|+++|+++.+...+           ...|.             .+ .+.++ ++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~A-----------a~~g~-------------dv-~~lee~~~  319 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQA-----------TMEGL-------------QV-LTLEDVVS  319 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EE-CCGGGTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-----------HHhCC-------------cc-CCHHHHHH
Confidence            4789999999999999999999999999999999876554           23332             22 34444 77


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .+|+|+++......+..+.    -..++++++|+..
T Consensus       320 ~aDvVi~atG~~~vl~~e~----l~~mk~gaiVvNa  351 (488)
T 3ond_A          320 EADIFVTTTGNKDIIMLDH----MKKMKNNAIVCNI  351 (488)
T ss_dssp             TCSEEEECSSCSCSBCHHH----HTTSCTTEEEEES
T ss_pred             hcCEEEeCCCChhhhhHHH----HHhcCCCeEEEEc
Confidence            8999998765322222222    2456778877633

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.78  E-value=6.5e-06  Score=70.28  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=34.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVR   43 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~   43 (297)
                      -++|.|+|+|.||++++..|++.|. +|++++|++++.+.
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            3689999999999999999999999 99999999876543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.78  E-value=0.00022  Score=64.53  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=83.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-------Chhhhcc--cCCCc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQL-------SQAVGTD--APRRL   73 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~--~~~~i   73 (297)
                      ..||||||+|.||..++..+... |.+|+ ++|+++++++.+.+...         |.-       +..+...  .....
T Consensus        23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~y---------G~~~~~~~~~~~~~i~~a~~~g~~   93 (446)
T 3upl_A           23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAY---------GDEENAREATTESAMTRAIEAGKI   93 (446)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHH---------SSSTTEEECSSHHHHHHHHHTTCE
T ss_pred             ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhc---------CCccccccccchhhhhhhhccCCc
Confidence            45899999999999999887653 55644 77999988776532210         100       0000000  01224


Q ss_pred             EEecCccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCC
Q 022434           74 RCTSNLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPP  147 (297)
Q Consensus        74 ~~~~~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~  147 (297)
                      .+++|+++ ++  +.|+|++++|....-.......++.   ...+++.+. .+..   .++.+.......+         
T Consensus        94 ~v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~A---GKHVv~~nk-~l~~~eg~eL~~~A~e~Gvv---------  160 (446)
T 3upl_A           94 AVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRN---GKHLVMMNV-EADVTIGPYLKAQADKQGVI---------  160 (446)
T ss_dssp             EEESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHT---TCEEEECCH-HHHHHHHHHHHHHHHHHTCC---------
T ss_pred             eEECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHc---CCcEEecCc-ccCHHHHHHHHHHHHHhCCe---------
Confidence            56788876 44  5899999998642212223333332   334554332 2222   1232222111111         


Q ss_pred             CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       148 ~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                             +....+..+...-.+.++.+.+|.+++.++
T Consensus       161 -------l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          161 -------YSLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             -------EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             -------eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence                   111222346667777788889999998774

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.76  E-value=7.3e-05  Score=57.30  Aligned_cols=81  Identities=12%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    |.+|..++..|.+.||+  +|+++++. +.                          ...+.+..+++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~   72 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVL   72 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGG
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHH
Confidence            468999999    79999999999999997  55555542 10                          01224556677


Q ss_pred             cc-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           81 DL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ ...|+++.++|.+.  ..+++.++.+.- ...++.
T Consensus        73 ~l~~~vDlvvi~vp~~~--~~~vv~~~~~~g-i~~i~~  107 (144)
T 2d59_A           73 DIPDKIEVVDLFVKPKL--TMEYVEQAIKKG-AKVVWF  107 (144)
T ss_dssp             GCSSCCSEEEECSCHHH--HHHHHHHHHHHT-CSEEEE
T ss_pred             HcCCCCCEEEEEeCHHH--HHHHHHHHHHcC-CCEEEE
Confidence            64 57999999999743  456666654432 235554

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.75  E-value=0.00012  Score=62.37  Aligned_cols=41  Identities=12%  Similarity=0.130  Sum_probs=37.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~   45 (297)
                      .+++.|+|+|.+|++++..|++.|. +|++++|++++++.+.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999999996 9999999998877663

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.73  E-value=0.00016  Score=63.43  Aligned_cols=102  Identities=14%  Similarity=0.221  Sum_probs=63.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      -||+|+|+ |.+|.+++..|+....       ++.++|+++..  ++-..-.        ++...+.      ....+..
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~D--------L~~~~~~------~~~~~~~   90 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAE--------LEDCAFP------LLDKVVV   90 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHHTTCT------TEEEEEE
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhh--------hhhcCcc------CCCcEEE
Confidence            48999997 9999999999998654       79999998642  2211101        1222111      1123344


Q ss_pred             ecCcc-ccCCCcEEEEec--cc------------cHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           76 TSNLK-DLHSADIIVEAI--VE------------SEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        76 ~~~~~-~~~~aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +++.. ++++||+||.+.  |-            +..+.+.+...|.+.++++++|+..|.
T Consensus        91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN  151 (345)
T 4h7p_A           91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN  151 (345)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence            55554 489999999865  21            223444555567778878876543443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.73  E-value=0.00022  Score=63.26  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            4 KMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +..||+|||+|.||.. .+..+.+. +++|+ ++|+++++++.             +.+            .....+|++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-------------DLP------------DVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-------------HCT------------TSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hCC------------CCcEECCHH
Confidence            4568999999999997 56666654 77875 88999875431             111            124667877


Q ss_pred             c-cC--CCcEEEEeccccHHH
Q 022434           81 D-LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~~   98 (297)
                      + ++  +.|+|+.|+|.....
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H~   81 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATHA   81 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEeCChHHHH
Confidence            7 54  789999999987763

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.73  E-value=9.9e-05  Score=62.85  Aligned_cols=77  Identities=17%  Similarity=0.377  Sum_probs=47.9

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |..+.+||+|+|+ |.||+.++..+. ..|++|+ ++|++++... .           .+.+.+.    ......+...+
T Consensus         1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~-g-----------~d~~~~~----g~~~~~v~~~~   64 (273)
T 1dih_A            1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL-G-----------SDAGELA----GAGKTGVTVQS   64 (273)
T ss_dssp             -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC-S-----------CCTTCSS----SSSCCSCCEES
T ss_pred             CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhh-h-----------hhHHHHc----CCCcCCceecC
Confidence            5445579999999 999999999876 4678877 7888764210 0           0001000    00011234566


Q ss_pred             Cccc-cCCCcEEEEecc
Q 022434           78 NLKD-LHSADIIVEAIV   93 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~   93 (297)
                      ++++ ++++|+||++.+
T Consensus        65 dl~~~l~~~DvVIDft~   81 (273)
T 1dih_A           65 SLDAVKDDFDVFIDFTR   81 (273)
T ss_dssp             CSTTTTTSCSEEEECSC
T ss_pred             CHHHHhcCCCEEEEcCC
Confidence            7766 678999997664

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.72  E-value=4.5e-05  Score=58.22  Aligned_cols=83  Identities=14%  Similarity=0.128  Sum_probs=55.8

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    |.||..++.+|.+.||+  +|++|+.+...                         ....+.+..+++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~   65 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLL   65 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGG
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHH
Confidence            468999999    89999999999999997  66777652100                         011234566677


Q ss_pred             cc-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           81 DL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ +..|+++.++|.+.  ..+++.++.+.-. ..+++
T Consensus        66 el~~~vDlavi~vp~~~--~~~v~~~~~~~gi-~~i~~  100 (140)
T 1iuk_A           66 DLKEPVDILDVFRPPSA--LMDHLPEVLALRP-GLVWL  100 (140)
T ss_dssp             GCCSCCSEEEECSCHHH--HTTTHHHHHHHCC-SCEEE
T ss_pred             HCCCCCCEEEEEeCHHH--HHHHHHHHHHcCC-CEEEE
Confidence            74 56999999998633  4455666544322 34554

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.71  E-value=2.8e-05  Score=70.18  Aligned_cols=71  Identities=28%  Similarity=0.376  Sum_probs=51.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|.||..++..+...|. +|+++||++++++...+          +.|.-       .   + ...++.+ +
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~----------~~g~~-------~---~-~~~~l~~~l  225 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR----------DLGGE-------A---V-RFDELVDHL  225 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----------HHTCE-------E---C-CGGGHHHHH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH----------HcCCc-------e---e-cHHhHHHHh
Confidence            4789999999999999999999998 89999999987644311          11320       0   0 0123333 5


Q ss_pred             CCCcEEEEeccccH
Q 022434           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      +++|+||.+++...
T Consensus       226 ~~aDvVi~at~~~~  239 (404)
T 1gpj_A          226 ARSDVVVSATAAPH  239 (404)
T ss_dssp             HTCSEEEECCSSSS
T ss_pred             cCCCEEEEccCCCC
Confidence            78999999997654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.70  E-value=0.00026  Score=62.66  Aligned_cols=97  Identities=9%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEEKMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |..+..||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+             +.+            .....+
T Consensus         1 M~m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~   55 (358)
T 3gdo_A            1 MSLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------DFP------------DAEVVH   55 (358)
T ss_dssp             -CTTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------HCT------------TSEEES
T ss_pred             CCCCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hCC------------CCceEC
Confidence            5435579999999999997 56666554 67765 78999865221             111            125667


Q ss_pred             Cccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           78 NLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      |+++ ++  +.|+|+.|+|..... ..+...++.   ...+++--.-+....
T Consensus        56 ~~~~ll~~~~vD~V~i~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~~  103 (358)
T 3gdo_A           56 ELEEITNDPAIELVIVTTPSGLHY-EHTMACIQA---GKHVVMEKPMTATAE  103 (358)
T ss_dssp             STHHHHTCTTCCEEEECSCTTTHH-HHHHHHHHT---TCEEEEESSCCSSHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHHH-HHHHHHHHc---CCeEEEecCCcCCHH
Confidence            8877 54  689999999988763 222222332   334665444444443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.70  E-value=7e-05  Score=62.94  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ++|.|||+|.+|+.+|..|+.+|. +++++|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999997 899999997

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.70  E-value=0.00041  Score=57.01  Aligned_cols=128  Identities=21%  Similarity=0.186  Sum_probs=76.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecC--ccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSN--LKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--~~~   81 (297)
                      -++|.|||+|.+|..-+..|+++|.+|++++++...  .+        ..+.+.+.+            .+ ...  .++
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~--~l--------~~l~~~~~i------------~~i~~~~~~~d   88 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSA--EI--------NEWEAKGQL------------RVKRKKVGEED   88 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCH--HH--------HHHHHTTSC------------EEECSCCCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCH--HH--------HHHHHcCCc------------EEEECCCCHhH
Confidence            478999999999999999999999999999876432  11        122344432            22 122  344


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecCC
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA  159 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~~  159 (297)
                      +.++|+||.+.. +.++...+    ...++.+..+  |...-           |+.   ..|+.|.-  ..++.--+.+.
T Consensus        89 L~~adLVIaAT~-d~~~N~~I----~~~ak~gi~V--NvvD~-----------p~~---~~f~~Paiv~rg~l~iaIST~  147 (223)
T 3dfz_A           89 LLNVFFIVVATN-DQAVNKFV----KQHIKNDQLV--NMASS-----------FSD---GNIQIPAQFSRGRLSLAISTD  147 (223)
T ss_dssp             SSSCSEEEECCC-CTHHHHHH----HHHSCTTCEE--EC----------------C---CSEECCEEEEETTEEEEEECT
T ss_pred             hCCCCEEEECCC-CHHHHHHH----HHHHhCCCEE--EEeCC-----------ccc---CeEEEeeEEEeCCEEEEEECC
Confidence            889999998754 44433333    3334433333  33211           111   23444442  23344445666


Q ss_pred             CCcHHHHHHHHHHHHH
Q 022434          160 DTSDETFRATKALAER  175 (297)
Q Consensus       160 ~~~~~~~~~~~~ll~~  175 (297)
                      +.+|.....+++-++.
T Consensus       148 G~sP~la~~iR~~ie~  163 (223)
T 3dfz_A          148 GASPLLTKRIKEDLSS  163 (223)
T ss_dssp             TSCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            7789888888877765

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.69  E-value=0.00025  Score=62.95  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=62.2

Q ss_pred             cEEEEECCChhHH-HHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGS-GIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~-~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.+|. .++..+...|++|+ ++|+++++++.+.+          +.|.            ....+|+++ +
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~----------~~~~------------~~~~~~~~~ll   84 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSA----------VYAD------------ARRIATAEEIL   84 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HSSS------------CCEESCHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHH----------HcCC------------CcccCCHHHHh
Confidence            5899999999995 56777777889855 88999988766521          1121            135677777 4


Q ss_pred             C--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           83 H--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +  +.|+|+.|+|..... ..+...++.   ...|++--..+...+
T Consensus        85 ~~~~vD~V~I~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~~  126 (361)
T 3u3x_A           85 EDENIGLIVSAAVSSERA-ELAIRAMQH---GKDVLVDKPGMTSFD  126 (361)
T ss_dssp             TCTTCCEEEECCCHHHHH-HHHHHHHHT---TCEEEEESCSCSSHH
T ss_pred             cCCCCCEEEEeCChHHHH-HHHHHHHHC---CCeEEEeCCCCCCHH
Confidence            4  489999999987653 222222332   335666555555553

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.68  E-value=5.2e-05  Score=68.24  Aligned_cols=39  Identities=23%  Similarity=0.223  Sum_probs=35.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|+|||+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999999877654

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.68  E-value=0.00031  Score=62.27  Aligned_cols=74  Identities=8%  Similarity=0.128  Sum_probs=52.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..+|+|||+|.||..++..+... ++++ .++|+++++.+.+.+          +.|. .        ......+++++ 
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~----------~~~~-~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY-P--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC-C--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-C--------CCCeeeCCHHHH
Confidence            46899999999999999988875 5676 488999987665421          1121 0        01245667776 


Q ss_pred             cC--CCcEEEEeccccHH
Q 022434           82 LH--SADIIVEAIVESED   97 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~   97 (297)
                      ++  ++|+|+.|+|....
T Consensus        67 l~~~~~D~V~i~tp~~~h   84 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSLH   84 (362)
T ss_dssp             HHCTTCCEEEECCCGGGH
T ss_pred             hcCCCCCEEEEcCChHHH
Confidence            43  69999999998765

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.67  E-value=0.00016  Score=62.52  Aligned_cols=68  Identities=21%  Similarity=0.241  Sum_probs=44.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ..||+|||+|.||..++..+.+ .+++++ ++|+++++++.              .|..           ....+++.+.
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~~-----------~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQP-----------FRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCTT-----------SCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCCC-----------cCCHHHHHhC
Confidence            4689999999999999999887 467877 78999875421              1210           1123344444


Q ss_pred             CCCcEEEEeccccHH
Q 022434           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .++|+||+|+|....
T Consensus        64 ~~~DvViiatp~~~h   78 (304)
T 3bio_A           64 ESVDVALVCSPSREV   78 (304)
T ss_dssp             SSCCEEEECSCHHHH
T ss_pred             CCCCEEEECCCchhh
Confidence            789999999997665

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.66  E-value=0.00026  Score=60.21  Aligned_cols=40  Identities=13%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++|.|.|+|.+|+.++..|++.|++|++++|++++.+..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   44 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAI   44 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhH
Confidence            4689999999999999999999999999999998766543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.65  E-value=8.6e-05  Score=65.06  Aligned_cols=96  Identities=18%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCCC--c-----EEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            5 MKVMGVVG-SGQMGSGIAQLGVMDGL--D-----VWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         5 ~~~I~viG-~G~mG~~iA~~l~~~G~--~-----V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .+||+|+| +|.+|.++|..|+..|.  +     ++++|+++.  +++.....        ++.....      ....+.
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~D--------L~~~~~~------~~~~~~   68 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLME--------LQDCALP------LLKDVI   68 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHHTCCT------TEEEEE
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhh--------hHhhhhc------ccCCEE
Confidence            46899999 69999999999999886  6     999999752  33322111        1121110      112334


Q ss_pred             EecC-ccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCe
Q 022434           75 CTSN-LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASA  114 (297)
Q Consensus        75 ~~~~-~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~  114 (297)
                      .+++ ++++++||+||.+..-              +..+.+.+...+.+..+++.
T Consensus        69 ~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~  123 (333)
T 5mdh_A           69 ATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV  123 (333)
T ss_dssp             EESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             EcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            4444 4569999999987521              12345556667778777664

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.64  E-value=0.00031  Score=58.21  Aligned_cols=39  Identities=5%  Similarity=-0.131  Sum_probs=34.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.+|..++..|.+.|+ |+++|++++.++.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~   47 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL   47 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence            4689999999999999999999999 99999999877654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.64  E-value=8.6e-05  Score=60.77  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=34.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |||.|.|+ |.+|+.++..|++.|++|++++|++++++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            37999998 999999999999999999999999887653

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.63  E-value=0.00029  Score=61.75  Aligned_cols=95  Identities=9%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG---LD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||+|||+|.||..++..+...+   ++ |.++|+++++++.+.+.          .|.-            ...+|+++
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------~~~~------------~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------HDIP------------KAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------HTCS------------CEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------cCCC------------cccCCHHH
Confidence            58999999999999999887754   34 45789999887665221          1210            24667776


Q ss_pred             -cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  +.|+|+.|+|...... .+...++.   ...+++--..+....
T Consensus        61 ll~~~~vD~V~i~tp~~~H~~-~~~~al~~---GkhVl~EKP~a~~~~  104 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHKA-AVMLCLAA---GKAVLCEKPMGVNAA  104 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHHH-HHHHHHHT---TCEEEEESSSSSSHH
T ss_pred             HhcCCCCCEEEECCCcHHHHH-HHHHHHhc---CCEEEEECCCCCCHH
Confidence             44  6999999999887632 22222332   344666555555553

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.62  E-value=0.00015  Score=66.55  Aligned_cols=40  Identities=30%  Similarity=0.391  Sum_probs=37.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .|+|-|+|+|.+|..+|..|...||+|+++|.++++++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~   42 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLREL   42 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            4789999999999999999999999999999999988765

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.59  E-value=0.00018  Score=63.88  Aligned_cols=97  Identities=11%  Similarity=0.159  Sum_probs=61.0

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            1 MEEKMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |+.+..||+|||+|.||.. .+..+... +++|+ ++|++++++++                         ........+
T Consensus         1 M~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~   55 (362)
T 3fhl_A            1 MSLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVR   55 (362)
T ss_dssp             --CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEES
T ss_pred             CCCCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceEC
Confidence            6556679999999999997 66666665 77775 78999764210                         111235678


Q ss_pred             Cccc-cCC--CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           78 NLKD-LHS--ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        78 ~~~~-~~~--aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      |+++ +++  .|+|+.|+|...... .+...++.   ...+++--.-+.+.+
T Consensus        56 ~~~~ll~~~~vD~V~i~tp~~~H~~-~~~~al~a---GkhVl~EKP~a~~~~  103 (362)
T 3fhl_A           56 SFKELTEDPEIDLIVVNTPDNTHYE-YAGMALEA---GKNVVVEKPFTSTTK  103 (362)
T ss_dssp             CSHHHHTCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSCCSSHH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHHH-HHHHHHHC---CCeEEEecCCCCCHH
Confidence            8877 544  899999999877532 22222332   334666545455543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.59  E-value=0.00013  Score=62.23  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=36.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+++.|+|+|.+|++++..|...|. +|++++|++++++.+
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            4689999999999999999999998 899999999877654

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.59  E-value=0.00012  Score=63.81  Aligned_cols=93  Identities=11%  Similarity=0.217  Sum_probs=59.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++  .+            ..             .+...+++++ 
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~~-------------gv~~~~d~~~l   55 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------KT-------------PVFDVADVDKH   55 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------SS-------------CEEEGGGGGGT
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------cC-------------CCceeCCHHHH
Confidence            35899999999999999998876 5665 488988653  11            01             1344566666 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHH
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL  128 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l  128 (297)
                      +.++|+||+|+|..... ..+...++.   ...++++.+.+....++
T Consensus        56 l~~~DvViiatp~~~h~-~~~~~al~a---G~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           56 ADDVDVLFLCMGSATDI-PEQAPKFAQ---FACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTTCSEEEECSCTTTHH-HHHHHHHTT---TSEEECCCCCGGGHHHH
T ss_pred             hcCCCEEEEcCCcHHHH-HHHHHHHHC---CCEEEECCCCcCCHHHH
Confidence            47899999999887542 223333322   33466655555555444

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.58  E-value=0.00027  Score=61.97  Aligned_cols=96  Identities=13%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CcEEEEECCChhHH-HHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGS-GIAQLGVMDGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~-~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..||+|||+|.+|. .++..+...|++| .++|+++++++.+.+          +.+.            ....+|+++ 
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~----------~~~~------------~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTS----------LFPS------------VPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHH----------HSTT------------CCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHH----------hcCC------------CcccCCHHHH
Confidence            46899999999996 6777777788996 588999987765521          1111            134567766 


Q ss_pred             cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  +.|+|+.|+|..... ..+...++.   ...+++--..+.+..
T Consensus        62 l~~~~~D~V~i~tp~~~h~-~~~~~al~a---GkhVl~EKP~a~~~~  104 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDRA-ELALRTLDA---GKDFFTAKPPLTTLE  104 (336)
T ss_dssp             HTCTTCCEEEECSCGGGHH-HHHHHHHHT---TCEEEECSSCCSCHH
T ss_pred             hhCCCCCEEEEeCChhhHH-HHHHHHHHC---CCcEEEeCCCCCCHH
Confidence            44  689999999987763 222222332   234665444455543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.58  E-value=6.7e-05  Score=67.19  Aligned_cols=40  Identities=18%  Similarity=0.050  Sum_probs=36.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|+|+|+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3689999999999999999999999999999998876654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.56  E-value=0.00038  Score=61.27  Aligned_cols=74  Identities=11%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             CCCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            3 EKMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +++.||||||+|.||.. ++..+... +.+|+ ++|+++++++++.++          .|.            -.+.+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~------------~~~y~d~   78 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------FSV------------PHAFGSY   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------HTC------------SEEESSH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cCC------------CeeeCCH
Confidence            34679999999999975 45566654 67766 789999987765321          121            1356777


Q ss_pred             cc-c--CCCcEEEEeccccHHH
Q 022434           80 KD-L--HSADIIVEAIVESEDV   98 (297)
Q Consensus        80 ~~-~--~~aD~Vi~~v~e~~~~   98 (297)
                      ++ +  .+.|+|+.|+|.....
T Consensus        79 ~ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           79 EEMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             HHHHHCSSCSEEEECSCGGGHH
T ss_pred             HHHhcCCCCCEEEEeCCCchhH
Confidence            77 4  4689999999988763

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.55  E-value=0.00027  Score=60.61  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=51.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .+++.|+|+|.+|+++|..|++.| +|++++|++++++.+.+.+....      +.....       .+...+-.+.+.+
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~~~~~~-------~~d~~~~~~~~~~  193 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------NKKFGE-------EVKFSGLDVDLDG  193 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------TCCHHH-------HEEEECTTCCCTT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------ccccce-------eEEEeeHHHhhCC
Confidence            468999999999999999999999 99999999988776644432110      000000       0112211234678


Q ss_pred             CcEEEEecccc
Q 022434           85 ADIIVEAIVES   95 (297)
Q Consensus        85 aD~Vi~~v~e~   95 (297)
                      +|+||.+.+..
T Consensus       194 ~DilVn~ag~~  204 (287)
T 1nvt_A          194 VDIIINATPIG  204 (287)
T ss_dssp             CCEEEECSCTT
T ss_pred             CCEEEECCCCC
Confidence            99999988743

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.53  E-value=0.00092  Score=60.96  Aligned_cols=76  Identities=14%  Similarity=0.208  Sum_probs=53.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec----C
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS----N   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~   78 (297)
                      ..||+|||+|.||...+..+... |++|+ ++|+++++++.+.+.+.       +.|.          ......+    |
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~~   82 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGNDD   82 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTTT
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCCC
Confidence            46899999999999999888774 67764 88999988776533211       1221          0113445    7


Q ss_pred             ccc-cC--CCcEEEEeccccHH
Q 022434           79 LKD-LH--SADIIVEAIVESED   97 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~   97 (297)
                      +++ ++  +.|+|+.|+|....
T Consensus        83 ~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           83 YKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             HHHHTTCTTCCEEEECCCGGGH
T ss_pred             HHHHhcCCCCCEEEEcCCcHHH
Confidence            776 54  58999999998775

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.53  E-value=0.00049  Score=62.58  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=61.5

Q ss_pred             CcEEEEECCChhHH-HHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGS-GIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~-~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+|+|||+|.||. .++..+.+. +++| .++|+++++.+.+.+          +.|. ..       ..+...+++++
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~----------~~g~-~~-------~~~~~~~~~~~  144 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA----------EYGV-DP-------RKIYDYSNFDK  144 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH----------HTTC-CG-------GGEECSSSGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-Cc-------ccccccCCHHH
Confidence            35899999999997 888888775 5675 588999987665421          1121 00       01224566766


Q ss_pred             -cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  ++|+|+.|+|..... ..+...++.   ...|++--..+....
T Consensus       145 ll~~~~vD~V~iatp~~~h~-~~~~~al~a---Gk~Vl~EKPla~~~~  188 (433)
T 1h6d_A          145 IAKDPKIDAVYIILPNSLHA-EFAIRAFKA---GKHVMCEKPMATSVA  188 (433)
T ss_dssp             GGGCTTCCEEEECSCGGGHH-HHHHHHHHT---TCEEEECSSCCSSHH
T ss_pred             HhcCCCCCEEEEcCCchhHH-HHHHHHHHC---CCcEEEcCCCCCCHH
Confidence             44  699999999987753 222222322   234665444445543

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=97.52  E-value=0.0026  Score=53.35  Aligned_cols=108  Identities=16%  Similarity=0.225  Sum_probs=76.6

Q ss_pred             cEEec-CccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHh---hhcCCC-CeEEEeecCCCC
Q 022434           73 LRCTS-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLA---SATSRP-CQVIGMHFMNPP  147 (297)
Q Consensus        73 i~~~~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~---~~~~~~-~~~~g~h~~~p~  147 (297)
                      +.+++ |.++++++|++|..+|-... ...+++++.+++++++||+ ||.++++..+.   +.+.+. ..+..+||-.-|
T Consensus       129 VkVtsDD~EAvk~AEi~IlftPfG~~-t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVP  206 (358)
T 2b0j_A          129 LKVTSDDREAVEGADIVITWLPKGNK-QPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCVP  206 (358)
T ss_dssp             CEEESCHHHHHTTCSEEEECCTTCTT-HHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCT
T ss_pred             cEeecchHHHhcCCCEEEEecCCCCC-cHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            45554 45569999999999997553 3478888999999999997 67777764333   334433 346667776555


Q ss_pred             CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       148 ~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      ...+.+-+-. .-.+++.++++.++.+..|+.++.+
T Consensus       207 gt~Gq~~~g~-~yAtEEqIeklveLaksa~k~ay~v  241 (358)
T 2b0j_A          207 EMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKM  241 (358)
T ss_dssp             TTCCCEEEEE-SSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCCcccccc-ccCCHHHHHHHHHHHHHhCCCeEec
Confidence            4433333332 2368899999999999999999977

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.51  E-value=6.9e-05  Score=61.55  Aligned_cols=38  Identities=26%  Similarity=0.490  Sum_probs=34.3

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .+++|.|.|+ |.+|+.++..|++.|++|++++|++++.
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            4679999996 9999999999999999999999997643

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.50  E-value=0.00024  Score=57.86  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |||.|+|+ |.+|+.++..|++.|++|++++|++++++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ   39 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence            47999996 999999999999999999999999876554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.47  E-value=0.00033  Score=57.28  Aligned_cols=39  Identities=10%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHH-HCCCcEEEEeCCHH-HHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGV-MDGLDVWLVDTDPD-ALVR   43 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~-~~G~~V~~~d~~~~-~~~~   43 (297)
                      +++|.|.|+ |.+|..++..|+ +.|++|++++|+++ +++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            346999996 999999999999 89999999999987 6544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.45  E-value=0.00056  Score=60.34  Aligned_cols=93  Identities=16%  Similarity=0.211  Sum_probs=59.4

Q ss_pred             CcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||.. .+..+... +++|+ ++|++++++++             +.            ......+|+++
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~   61 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW------------PAIPVVSDPQM   61 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC------------SSCCEESCHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC------------CCCceECCHHH
Confidence            468999999999997 67667665 67775 88999875431             01            12245677776


Q ss_pred             -cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  +.|+|+.|+|...... .+...++.   ...+++--.-+....
T Consensus        62 ll~~~~vD~V~i~tp~~~H~~-~~~~al~a---GkhV~~EKPla~~~~  105 (352)
T 3kux_A           62 LFNDPSIDLIVIPTPNDTHFP-LAQSALAA---GKHVVVDKPFTVTLS  105 (352)
T ss_dssp             HHHCSSCCEEEECSCTTTHHH-HHHHHHHT---TCEEEECSSCCSCHH
T ss_pred             HhcCCCCCEEEEeCChHHHHH-HHHHHHHC---CCcEEEECCCcCCHH
Confidence             44  5899999999887632 22222322   234665444455543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.43  E-value=0.00018  Score=61.10  Aligned_cols=100  Identities=13%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVG-SGQMGSGIAQLGVMD-GLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG-~G~mG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +.||+|+| .|.||+.++..+.+. +++++. +|++.+... .           .+.+.+.     .....+...+|+++
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~-G-----------~d~gel~-----g~~~gv~v~~dl~~   69 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL-G-----------QDAGAFL-----GKQTGVALTDDIER   69 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT-T-----------SBTTTTT-----TCCCSCBCBCCHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc-c-----------ccHHHHh-----CCCCCceecCCHHH
Confidence            57999999 799999999988765 677664 688753210 0           0111110     01113455677776


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++++|+||++.+....  .+...   ..+..+.-+++.|.+++.+
T Consensus        70 ll~~~DVVIDfT~p~a~--~~~~~---~al~~G~~vVigTTG~s~~  110 (272)
T 4f3y_A           70 VCAEADYLIDFTLPEGT--LVHLD---AALRHDVKLVIGTTGFSEP  110 (272)
T ss_dssp             HHHHCSEEEECSCHHHH--HHHHH---HHHHHTCEEEECCCCCCHH
T ss_pred             HhcCCCEEEEcCCHHHH--HHHHH---HHHHcCCCEEEECCCCCHH
Confidence             6789999998863322  22222   2223333344455566654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.42  E-value=0.00013  Score=64.73  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=36.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~  206 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYL  206 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999887766

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.41  E-value=0.00068  Score=61.70  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=63.9

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMD--GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ..||+|||+    |.||..++..|.+.  +++| .++|+++++++.+.+          +.|.          ..+...+
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~----------~~g~----------~~~~~~~   79 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQ----------RLKL----------SNATAFP   79 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHH----------HTTC----------TTCEEES
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHH----------HcCC----------CcceeeC
Confidence            468999999    99999999999886  6776 588999987765521          1121          1123567


Q ss_pred             Cccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhc---CCCeEEEecCCCCcH
Q 022434           78 NLKD-LH--SADIIVEAIVESEDVKKKLFSELDKIT---KASAILASNTSSISI  125 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~---~~~~ii~s~ts~~~~  125 (297)
                      ++++ ++  +.|+|+.|+|..... ..+...++...   +...|++--..+...
T Consensus        80 ~~~~ll~~~~vD~V~i~tp~~~H~-~~~~~al~aG~~~~~~khVl~EKP~a~~~  132 (438)
T 3btv_A           80 TLESFASSSTIDMIVIAIQVASHY-EVVMPLLEFSKNNPNLKYLFVEWALACSL  132 (438)
T ss_dssp             SHHHHHHCSSCSEEEECSCHHHHH-HHHHHHHHHGGGCTTCCEEEEESSCCSSH
T ss_pred             CHHHHhcCCCCCEEEEeCCcHHHH-HHHHHHHHCCCCcccceeEEecCcccCCH
Confidence            7776 43  689999999987653 22223333320   003466654444444

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.41  E-value=0.00039  Score=61.54  Aligned_cols=110  Identities=7%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCCC--c---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-c
Q 022434            5 MKVMGVVG-SGQMGSGIAQLGVMDGL--D---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-S   77 (297)
Q Consensus         5 ~~~I~viG-~G~mG~~iA~~l~~~G~--~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~   77 (297)
                      ..||+|+| +|.+|.++|..++..+.  +   +.++|.+.+..+...+...  ++  ++.+...      ....+... .
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~a--mD--L~h~~~p------~~~~v~i~~~  101 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA--ME--LEDSLYP------LLREVSIGID  101 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH--HH--HHTTTCT------TEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHH--Hh--HHhhhhh------hcCCcEEecC
Confidence            46899999 69999999999999875  3   7776654332111111100  00  2222210      11233444 3


Q ss_pred             CccccCCCcEEEEecc--c------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           78 NLKDLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++++++||+||.+..  -            +..+.+.+...+.+...++++++.-|....
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD  162 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  162 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            4667999999998652  1            112333444456666556776664444333

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.41  E-value=0.00032  Score=60.83  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=36.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATKS   47 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~   47 (297)
                      -+++.|+|+|.+|++++..|++.|. +|++++|+   .++++.+.+.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~  200 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEK  200 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHH
Confidence            4689999999999999999999998 89999999   7766655433

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.37  E-value=0.00055  Score=59.30  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=36.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~   46 (297)
                      -+++.|+|+|.+|++++..|++.|. +|++++|+   .++++++.+
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~  193 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK  193 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHH
Confidence            4689999999999999999999998 89999999   666655533

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.37  E-value=0.00036  Score=59.60  Aligned_cols=102  Identities=16%  Similarity=0.125  Sum_probs=57.9

Q ss_pred             CCcEEEEEC-CChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            4 KMKVMGVVG-SGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~I~viG-~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .+.||+|+| .|.||+.++..+.+ .+++++ ++|+++.... .           .+.|.+    .......+.+++|++
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~-G-----------~d~gel----~G~~~~gv~v~~dl~   83 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV-D-----------KDASIL----IGSDFLGVRITDDPE   83 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT-T-----------SBGGGG----TTCSCCSCBCBSCHH
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-c-----------cchHHh----hccCcCCceeeCCHH
Confidence            346899999 89999999998775 467755 5588653110 0           000000    000012345677887


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      + ++++|+||++.+.+.     .+..+...+..+.-+++.|.+++.+
T Consensus        84 ~ll~~aDVvIDFT~p~a-----~~~~~~~~l~~Gv~vViGTTG~~~e  125 (288)
T 3ijp_A           84 SAFSNTEGILDFSQPQA-----SVLYANYAAQKSLIHIIGTTGFSKT  125 (288)
T ss_dssp             HHTTSCSEEEECSCHHH-----HHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred             HHhcCCCEEEEcCCHHH-----HHHHHHHHHHcCCCEEEECCCCCHH
Confidence            7 789999999875322     2233333333344444455666653

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.35  E-value=0.00078  Score=60.26  Aligned_cols=94  Identities=15%  Similarity=0.148  Sum_probs=62.2

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSG-QMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G-~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+| .||..++..+.+. +++|+ ++|+++++++.+.+.          .|.             ...+|+++ 
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g~-------------~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----------YGI-------------PVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----------HTC-------------CEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----------cCC-------------CeECCHHHH
Confidence            589999999 9999999988875 56665 789999877655221          122             35667776 


Q ss_pred             cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  ++|+|+.++|..... ..+...++.   ...+++-...+.+.+
T Consensus        60 l~~~~vD~V~i~tp~~~H~-~~~~~al~a---Gk~Vl~EKP~a~~~~  102 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFHC-EHVVQASEQ---GLHIIVEKPLTLSRD  102 (387)
T ss_dssp             HHHSCCSEEEECSCGGGHH-HHHHHHHHT---TCEEEECSCCCSCHH
T ss_pred             HcCCCCCEEEEcCCcHHHH-HHHHHHHHC---CCceeeeCCccCCHH
Confidence            43  599999999987753 222222332   234666555455543

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.34  E-value=0.00073  Score=60.94  Aligned_cols=96  Identities=14%  Similarity=0.205  Sum_probs=62.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC---------CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD---------GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      ..||||||+|.||...+..+.+.         +.+|+ ++|+++++++++.++          .|.            ..
T Consensus        26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------~~~------------~~   83 (412)
T 4gqa_A           26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------LGA------------EK   83 (412)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------HTC------------SE
T ss_pred             cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------cCC------------Ce
Confidence            35899999999999888887764         34554 779999988766322          122            13


Q ss_pred             EecCccc-c--CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           75 CTSNLKD-L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        75 ~~~~~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +.+|+++ +  .+.|+|+.|+|..... ..+...++.   ...+++--.-+.+..
T Consensus        84 ~y~d~~~ll~~~~vD~V~I~tp~~~H~-~~~~~al~a---GkhVl~EKP~a~~~~  134 (412)
T 4gqa_A           84 AYGDWRELVNDPQVDVVDITSPNHLHY-TMAMAAIAA---GKHVYCEKPLAVNEQ  134 (412)
T ss_dssp             EESSHHHHHHCTTCCEEEECSCGGGHH-HHHHHHHHT---TCEEEEESCSCSSHH
T ss_pred             EECCHHHHhcCCCCCEEEECCCcHHHH-HHHHHHHHc---CCCeEeecCCcCCHH
Confidence            5677776 4  3689999999988763 222333332   334666555455543

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.34  E-value=0.00094  Score=58.63  Aligned_cols=97  Identities=11%  Similarity=0.083  Sum_probs=63.3

Q ss_pred             CCcEEEEECCC-hhHHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            4 KMKVMGVVGSG-QMGSGIAQLGVMD--GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         4 ~~~~I~viG~G-~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +..||+|||+| .||...+..+.+.  ++++ .++|+++++++.+.++          .|.            ....+|+
T Consensus        17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~~~------------~~~~~~~   74 (340)
T 1zh8_A           17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------VGN------------PAVFDSY   74 (340)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------HSS------------CEEESCH
T ss_pred             CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------hCC------------CcccCCH
Confidence            34689999999 8999999988876  4666 5889999887665221          121            1456777


Q ss_pred             cc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           80 KD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        80 ~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++ ++  +.|+|+.|+|..... ..+...++.   ...+++--..+.+..
T Consensus        75 ~~ll~~~~vD~V~i~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~~  120 (340)
T 1zh8_A           75 EELLESGLVDAVDLTLPVELNL-PFIEKALRK---GVHVICEKPISTDVE  120 (340)
T ss_dssp             HHHHHSSCCSEEEECCCGGGHH-HHHHHHHHT---TCEEEEESSSSSSHH
T ss_pred             HHHhcCCCCCEEEEeCCchHHH-HHHHHHHHC---CCcEEEeCCCCCCHH
Confidence            76 43  689999999987652 222222332   234666444444443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.31  E-value=0.0015  Score=53.91  Aligned_cols=40  Identities=13%  Similarity=-0.002  Sum_probs=36.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|+.++..|++.|++|++++|++++++..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~   61 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL   61 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH
Confidence            468999998 9999999999999999999999999876554

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.30  E-value=0.00035  Score=61.51  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             cEEEEECCChhHHHHHHH-H-H-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQL-G-V-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~-l-~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||+|||+|.||..+... + . ..+++|+ ++|+++++.+..           .+            ...+...+|+++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~-----------~~------------~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA-----------PI------------YSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGS-----------GG------------GTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHH-----------Hh------------cCCCceECCHHH
Confidence            589999999999874443 3 2 2367877 889987654221           11            112356778877


Q ss_pred             -cC--CCcEEEEeccccHHH
Q 022434           82 -LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~   98 (297)
                       ++  +.|+|+.|+|.....
T Consensus        60 ll~~~~~D~V~i~tp~~~h~   79 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSHF   79 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGHH
T ss_pred             HhcCCCCCEEEEcCChHHHH
Confidence             54  489999999988753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.24  E-value=0.00081  Score=58.70  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             CCCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022434            3 EKMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~-iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +.+++|.|||.|.+|.+ +|..|.+.|++|+++|.++.
T Consensus         2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            2 NAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            35689999999999995 99999999999999998653

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.24  E-value=0.0025  Score=55.90  Aligned_cols=86  Identities=17%  Similarity=0.214  Sum_probs=48.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-Chhhh-cccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQL-SQAVG-TDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~~~   81 (297)
                      .||+|+|+|.+|+.++..|..+ +++|+ +.|.+++....+.++-     .....|.+ ...+. ......+.+..+.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~d-----g~s~~g~~~~~~~v~~~~~~~l~v~~~~~~   77 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEK-----GYKLFVAIPDNERVKLFEDAGIPVEGTILD   77 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHT-----TCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhc-----CCccccccCCCceeecccCCeEEECCchHH
Confidence            5899999999999999998876 57765 4466655544332210     00001111 00000 000011223333444


Q ss_pred             -cCCCcEEEEeccccH
Q 022434           82 -LHSADIIVEAIVESE   96 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~   96 (297)
                       ..++|+|++|.|...
T Consensus        78 ~~~~vDiV~eatg~~~   93 (343)
T 2yyy_A           78 IIEDADIVVDGAPKKI   93 (343)
T ss_dssp             TGGGCSEEEECCCTTH
T ss_pred             hccCCCEEEECCCccc
Confidence             468999999998765

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.22  E-value=0.00038  Score=63.60  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=35.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.+|+.++..|++.|++|+++||++++++.+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~l   42 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   42 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHH
Confidence            4689999999999999999999999999999998776543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00019  Score=65.76  Aligned_cols=41  Identities=12%  Similarity=0.048  Sum_probs=36.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~   44 (297)
                      +.++|.|+|+|.+|+.++..|++. |++|++++|++++++.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            357899999999999999999998 79999999999877654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.21  E-value=0.00027  Score=58.53  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCC-CcEEEEeCCHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDG-LDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~   41 (297)
                      .+++|.|.|+ |.+|..++..|++.| ++|++++|+++++
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            3578999996 999999999999999 9999999998754

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.21  E-value=0.00097  Score=59.87  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             cEEEEECCCh---hHHHHHHHHHHCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQ---MGSGIAQLGVMDG-LDVW--LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .||+|||+|.   ||...+..+...+ ++++  ++|+++++++.+.+          +.|. .         ...+.+|+
T Consensus        13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~----------~~g~-~---------~~~~~~~~   72 (398)
T 3dty_A           13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGE----------QLGV-D---------SERCYADY   72 (398)
T ss_dssp             EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHH----------HTTC-C---------GGGBCSSH
T ss_pred             ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHH----------HhCC-C---------cceeeCCH
Confidence            5899999999   9999988887765 6776  57999988766521          1222 0         01245666


Q ss_pred             cc-cC-------CCcEEEEeccccHH
Q 022434           80 KD-LH-------SADIIVEAIVESED   97 (297)
Q Consensus        80 ~~-~~-------~aD~Vi~~v~e~~~   97 (297)
                      ++ ++       +.|+|+.|+|....
T Consensus        73 ~~ll~~~~~~~~~vD~V~i~tp~~~H   98 (398)
T 3dty_A           73 LSMFEQEARRADGIQAVSIATPNGTH   98 (398)
T ss_dssp             HHHHHHHTTCTTCCSEEEEESCGGGH
T ss_pred             HHHHhcccccCCCCCEEEECCCcHHH
Confidence            66 43       48999999998876

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.18  E-value=0.00034  Score=57.21  Aligned_cols=78  Identities=10%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             CcEEEEECCChhHHHHHHH--HHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQL--GVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+|+|||+|.+|..++..  +...|++++ ++|.++++....            -.|           -.+...+++++
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~------------i~g-----------v~V~~~~dl~e  141 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTE------------VGG-----------VPVYNLDDLEQ  141 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCE------------ETT-----------EEEEEGGGHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhH------------hcC-----------CeeechhhHHH
Confidence            3579999999999999994  445688766 779998743211            000           01123445555


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHH
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELD  107 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~  107 (297)
                       ++..|+||.|+|...  .+++...+.
T Consensus       142 li~~~D~ViIAvPs~~--~~ei~~~l~  166 (215)
T 2vt3_A          142 HVKDESVAILTVPAVA--AQSITDRLV  166 (215)
T ss_dssp             HCSSCCEEEECSCHHH--HHHHHHHHH
T ss_pred             HHHhCCEEEEecCchh--HHHHHHHHH
Confidence             544599999999755  235555543

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.17  E-value=0.0017  Score=58.82  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=56.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH----------CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVM----------DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDA   69 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~----------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   69 (297)
                      ||+ ..+|+|||+|.+|..++..+.+          .+++|+ ++|+++++.+..           .. +          
T Consensus         7 MMk-~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-----------~~-~----------   63 (444)
T 3mtj_A            7 GMK-PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-----------AG-G----------   63 (444)
T ss_dssp             SCS-CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-----------HT-T----------
T ss_pred             hhC-cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-----------cc-c----------
Confidence            443 3589999999999999887764          244544 678988764332           11 1          


Q ss_pred             CCCcEEecCccc-cC--CCcEEEEeccc-cHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           70 PRRLRCTSNLKD-LH--SADIIVEAIVE-SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        70 ~~~i~~~~~~~~-~~--~aD~Vi~~v~e-~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                         ..+++|+++ ++  +.|+|++++|. ... ..-+...++.   ...+++.|.
T Consensus        64 ---~~~~~d~~ell~d~diDvVve~tp~~~~h-~~~~~~AL~a---GKhVvtenk  111 (444)
T 3mtj_A           64 ---LPLTTNPFDVVDDPEIDIVVELIGGLEPA-RELVMQAIAN---GKHVVTANK  111 (444)
T ss_dssp             ---CCEESCTHHHHTCTTCCEEEECCCSSTTH-HHHHHHHHHT---TCEEEECCH
T ss_pred             ---CcccCCHHHHhcCCCCCEEEEcCCCchHH-HHHHHHHHHc---CCEEEECCc
Confidence               135677776 43  58999999986 443 2223333332   345666555

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.17  E-value=0.0032  Score=57.51  Aligned_cols=34  Identities=29%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|.|||+|..|.+.|..|++.|++|+++|.++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4799999999999999999999999999999865

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.15  E-value=0.0039  Score=57.34  Aligned_cols=73  Identities=12%  Similarity=0.078  Sum_probs=53.6

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ..+|+|||+    |.||...+..|.+.  +++|+ ++|+++++++.+.+          +.|.          ......+
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~----------~~g~----------~~~~~~~   98 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE----------QLQL----------KHATGFD   98 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH----------HTTC----------TTCEEES
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHH----------HcCC----------CcceeeC
Confidence            358999999    99999999999886  77764 88999987766521          1121          1123567


Q ss_pred             Cccc-c--CCCcEEEEeccccHH
Q 022434           78 NLKD-L--HSADIIVEAIVESED   97 (297)
Q Consensus        78 ~~~~-~--~~aD~Vi~~v~e~~~   97 (297)
                      |+++ +  .+.|+|+.|+|....
T Consensus        99 d~~ell~~~~vD~V~I~tp~~~H  121 (479)
T 2nvw_A           99 SLESFAQYKDIDMIVVSVKVPEH  121 (479)
T ss_dssp             CHHHHHHCTTCSEEEECSCHHHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH
Confidence            7776 4  369999999998765

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.0015  Score=59.06  Aligned_cols=97  Identities=13%  Similarity=0.215  Sum_probs=60.3

Q ss_pred             cEEEEECCCh---hHHHHHHHHHHCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQ---MGSGIAQLGVMDG-LDVW--LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .||+|||+|.   ||...+..+...+ ++++  ++|+++++++.+.++          .|.-          ...+.+|+
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~~----------~~~~~~~~   97 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE----------LGLD----------PSRVYSDF   97 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH----------HTCC----------GGGBCSCH
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH----------cCCC----------cccccCCH
Confidence            5899999999   9999888877765 6765  679999887665321          1210          00245666


Q ss_pred             cc-cC-------CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           80 KD-LH-------SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        80 ~~-~~-------~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++ ++       +.|+|+.|+|.....  ++.....+  ....|++--.-+.+.+
T Consensus        98 ~~ll~~~~~~~~~vD~V~I~tp~~~H~--~~~~~al~--aGkhVl~EKPla~~~~  148 (417)
T 3v5n_A           98 KEMAIREAKLKNGIEAVAIVTPNHVHY--AAAKEFLK--RGIHVICDKPLTSTLA  148 (417)
T ss_dssp             HHHHHHHHHCTTCCSEEEECSCTTSHH--HHHHHHHT--TTCEEEEESSSCSSHH
T ss_pred             HHHHhcccccCCCCcEEEECCCcHHHH--HHHHHHHh--CCCeEEEECCCcCCHH
Confidence            66 43       489999999988753  22222111  2334666555455543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.14  E-value=0.00089  Score=56.19  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            589999999999999999999997 789998764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.12  E-value=0.0004  Score=59.50  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999996 799999876

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.11  E-value=0.00043  Score=57.32  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=30.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|+|||+|.-|...|..|+++|++|+++|+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.08  E-value=0.00072  Score=59.08  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHC---------CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD---------GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      .+|+|||+|.||+.++..+.+.         +.+|+ ++|++.++.+                + +.         .-.+
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~----------------~-~~---------~~~~   57 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR----------------A-IP---------QELL   57 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC----------------S-SC---------GGGE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh----------------c-cC---------cccc
Confidence            5899999999999999998876         34554 6688754211                1 10         1135


Q ss_pred             ecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      ++|+++ + +.|+|++|.+.......-+.+.|+.   ...+++.|
T Consensus        58 ~~d~~~ll-~iDvVve~t~~~~~a~~~~~~AL~a---GKhVVtaN   98 (332)
T 2ejw_A           58 RAEPFDLL-EADLVVEAMGGVEAPLRLVLPALEA---GIPLITAN   98 (332)
T ss_dssp             ESSCCCCT-TCSEEEECCCCSHHHHHHHHHHHHT---TCCEEECC
T ss_pred             cCCHHHHh-CCCEEEECCCCcHHHHHHHHHHHHc---CCeEEECC
Confidence            677877 6 9999999998764323233333433   33466544

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=97.08  E-value=0.0028  Score=55.29  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=30.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~   38 (297)
                      .+||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            468999997 9999999999999996       899999975

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.07  E-value=0.0019  Score=55.98  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH--CCCcE-EEEeCCHHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVM--DGLDV-WLVDTDPDA   40 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~--~G~~V-~~~d~~~~~   40 (297)
                      |++ ..||+|||+|.+|..++..+.+  .+.++ .++|+++++
T Consensus         1 M~~-~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            1 MNQ-KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CCS-CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCC-CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            543 4689999999999999999865  35554 467998765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.06  E-value=0.00064  Score=59.94  Aligned_cols=37  Identities=30%  Similarity=0.385  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ||.....|.|||+|.+|.+.|..|++.|++|+++|+.
T Consensus         2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            5555678999999999999999999999999999964

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.04  E-value=0.0026  Score=56.54  Aligned_cols=93  Identities=12%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             EEEEECCChhHHHHHHHHHH--------CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            7 VMGVVGSGQMGSGIAQLGVM--------DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~--------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ||||||+|.||..-+..+..        .+.+|+ ++|+++++++++.++          .|.            -.+.+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~------------~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------FGF------------EKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------HTC------------SEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------hCC------------CeecC
Confidence            89999999999876665433        245654 789999887765322          121            13567


Q ss_pred             Cccc-c--CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           78 NLKD-L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        78 ~~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      |+++ +  .+.|+|+.|+|...... .+...++.   ...|++--.-+...
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H~~-~a~~al~a---GkhVl~EKPla~~~  131 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFHAE-MAIAALEA---GKHVWCEKPMAPAY  131 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEECSCSCSSH
T ss_pred             CHHHHhcCCCCcEEEECCChHHHHH-HHHHHHhc---CCeEEEccCCcccH
Confidence            7777 4  46899999999887632 22233332   33456544444444

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.01  E-value=0.00067  Score=57.97  Aligned_cols=73  Identities=23%  Similarity=0.266  Sum_probs=51.8

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -+++.|||.|. +|.++|..|...|..|+++++....++.                                   .+.++
T Consensus       165 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~  209 (300)
T 4a26_A          165 GKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLR  209 (300)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhc
Confidence            46899999876 7999999999999999999974433220                                   01145


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .||+||.+++-..-++       .++++++++++..
T Consensus       210 ~ADIVI~Avg~p~~I~-------~~~vk~GavVIDv  238 (300)
T 4a26_A          210 TADIVIAAMGQPGYVK-------GEWIKEGAAVVDV  238 (300)
T ss_dssp             TCSEEEECSCCTTCBC-------GGGSCTTCEEEEC
T ss_pred             cCCEEEECCCCCCCCc-------HHhcCCCcEEEEE
Confidence            7999999997542222       1346778877643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.00  E-value=0.0005  Score=61.31  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=31.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +||.|||+|.-|..+|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899999999999999999999999999997643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.99  E-value=0.00043  Score=58.38  Aligned_cols=72  Identities=10%  Similarity=0.155  Sum_probs=51.6

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -+++.|||.|. +|.++|..|...|..|+++++....++.                                     .++
T Consensus       150 Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~-------------------------------------~~~  192 (276)
T 3ngx_A          150 ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGS-------------------------------------MTR  192 (276)
T ss_dssp             SCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHH-------------------------------------HHH
T ss_pred             CCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHH-------------------------------------hhc
Confidence            36899999975 8999999999999999999864322221                                     145


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      .||+||.+++-..-++       .++++++++++...
T Consensus       193 ~ADIVI~Avg~p~~I~-------~~~vk~GavVIDvg  222 (276)
T 3ngx_A          193 SSKIVVVAVGRPGFLN-------REMVTPGSVVIDVG  222 (276)
T ss_dssp             HSSEEEECSSCTTCBC-------GGGCCTTCEEEECC
T ss_pred             cCCEEEECCCCCcccc-------HhhccCCcEEEEec
Confidence            7999999997533222       23467777776433

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.97  E-value=0.00058  Score=58.12  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      +++|.|.|+|.+|+.++..|++.|++|++++|+++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            468999999999999999999999999999998653

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.97  E-value=0.0041  Score=57.46  Aligned_cols=67  Identities=21%  Similarity=0.385  Sum_probs=47.0

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            4 KMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~-iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+++|.|||.|..|.+ +|..|.+.|++|+++|..+....          +.+.+.|.-           +....+.+.+
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~----------~~l~~~gi~-----------~~~g~~~~~~   79 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVT----------QHLTALGAQ-----------IYFHHRPENV   79 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHH----------HHHHHTTCE-----------EESSCCGGGG
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHH----------HHHHHCCCE-----------EECCCCHHHc
Confidence            4689999999999996 89999999999999998754221          122344531           1112334457


Q ss_pred             CCCcEEEEe
Q 022434           83 HSADIIVEA   91 (297)
Q Consensus        83 ~~aD~Vi~~   91 (297)
                      .++|+||.+
T Consensus        80 ~~~d~vV~S   88 (494)
T 4hv4_A           80 LDASVVVVS   88 (494)
T ss_dssp             TTCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            789999976

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.96  E-value=0.0017  Score=57.93  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=50.7

Q ss_pred             CCCCCcEEEEEC-CChhHHH-HH----HHHHHCC-CcE----------EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 022434            1 MEEKMKVMGVVG-SGQMGSG-IA----QLGVMDG-LDV----------WLVDTDPDALVRATKSISSSIQKFVSKGQLSQ   63 (297)
Q Consensus         1 M~~~~~~I~viG-~G~mG~~-iA----~~l~~~G-~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~   63 (297)
                      |..+..||+||| +|.||.. .+    ..+...+ ..+          .++|+++++++.+.+          +.|..  
T Consensus         2 ~~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~----------~~~~~--   69 (383)
T 3oqb_A            2 LTTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAK----------RFNIA--   69 (383)
T ss_dssp             -CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHH----------HTTCC--
T ss_pred             CCCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHH----------HhCCC--
Confidence            444456899999 9999998 66    5555543 332          499999988776521          12220  


Q ss_pred             hhhcccCCCcEEecCccc-cC--CCcEEEEeccccHH
Q 022434           64 AVGTDAPRRLRCTSNLKD-LH--SADIIVEAIVESED   97 (297)
Q Consensus        64 ~~~~~~~~~i~~~~~~~~-~~--~aD~Vi~~v~e~~~   97 (297)
                                .+.+|+++ ++  +.|+|+.|+|....
T Consensus        70 ----------~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           70 ----------RWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             ----------CEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             ----------cccCCHHHHhcCCCCCEEEECCCchHH
Confidence                      25677776 43  58999999998765

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.94  E-value=0.0035  Score=52.24  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=26.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTD   37 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~-~~d~~   37 (297)
                      +||+|+|+ |.||+.++..+... |++|+ ++|++
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            38999997 99999999998865 89987 56664

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.94  E-value=0.003  Score=54.68  Aligned_cols=70  Identities=10%  Similarity=-0.036  Sum_probs=50.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +.||+|||+ |.+|...+..+...+.+++ ++|+++++. .+                      ........+.+++++ 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~----------------------~~~~~~~~~~~~~~~l   59 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LV----------------------DSFFPEAEFFTEPEAF   59 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GG----------------------GGTCTTCEEESCHHHH
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HH----------------------HhhCCCCceeCCHHHH
Confidence            569999999 7899999999999888755 779987642 11                      011122356667665 


Q ss_pred             c----------CCCcEEEEeccccHH
Q 022434           82 L----------HSADIIVEAIVESED   97 (297)
Q Consensus        82 ~----------~~aD~Vi~~v~e~~~   97 (297)
                      +          .+.|+|+.|+|....
T Consensus        60 l~~~~~l~~~~~~vD~V~I~tP~~~H   85 (312)
T 3o9z_A           60 EAYLEDLRDRGEGVDYLSIASPNHLH   85 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEEECSCGGGH
T ss_pred             HHHhhhhcccCCCCcEEEECCCchhh
Confidence            3          468999999998775

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.94  E-value=0.0031  Score=54.79  Aligned_cols=95  Identities=9%  Similarity=0.042  Sum_probs=60.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +.||+|||+ |.||...+..+...|.+++ ++|+++++. .+                      ........+.+++++ 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~----------------------~~~~~~~~~~~~~~~l   59 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-II----------------------DSISPQSEFFTEFEFF   59 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GG----------------------GGTCTTCEEESSHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HH----------------------HhhCCCCcEECCHHHH
Confidence            569999999 7899999999998888755 779887642 11                      011122355667665 


Q ss_pred             c-----------CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434           82 L-----------HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~-----------~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +           .+.|+|+.++|..... ..+...++.   ...+++--.-+....
T Consensus        60 l~~~~~l~~~~~~~vD~V~I~tP~~~H~-~~~~~al~a---GkhVl~EKPla~~~~  111 (318)
T 3oa2_A           60 LDHASNLKRDSATALDYVSICSPNYLHY-PHIAAGLRL---GCDVICEKPLVPTPE  111 (318)
T ss_dssp             HHHHHHHTTSTTTSCCEEEECSCGGGHH-HHHHHHHHT---TCEEEECSSCCSCHH
T ss_pred             HHhhhhhhhccCCCCcEEEECCCcHHHH-HHHHHHHHC---CCeEEEECCCcCCHH
Confidence            3           4689999999987753 222222332   334666444445543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.93  E-value=0.015  Score=50.34  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=35.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|+.++..|++.|++|++++|++++.+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            468999998 9999999999999999999999998766544

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.89  E-value=0.0011  Score=58.88  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=49.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+| +|...+..+.+.  +++++ ++|+++++.+++.+          +.|.             ...+|+++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~----------~~gv-------------~~~~~~~~   62 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAH----------AFGI-------------PLYTSPEQ   62 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHH----------HTTC-------------CEESSGGG
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHH----------HhCC-------------CEECCHHH
Confidence            4689999999 798777777664  57766 77999988776521          2232             35677877


Q ss_pred             -cCCCcEEEEeccccH
Q 022434           82 -LHSADIIVEAIVESE   96 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~   96 (297)
                       +++.|+|+.++|...
T Consensus        63 l~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A           63 ITGMPDIACIVVRSTV   78 (372)
T ss_dssp             CCSCCSEEEECCC--C
T ss_pred             HhcCCCEEEEECCCcc
Confidence             788999999998764

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.88  E-value=0.0033  Score=55.82  Aligned_cols=93  Identities=15%  Similarity=0.215  Sum_probs=60.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCC--------CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDG--------LDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G--------~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ||||||+|.||...+..+....        .+| .++|+++++++.+.++          .|.            -.+.+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------~g~------------~~~~~   65 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------LGW------------STTET   65 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------HTC------------SEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------cCC------------CcccC
Confidence            7999999999998877766532        244 4789999887765321          122            13567


Q ss_pred             Cccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           78 NLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      |+++ ++  +.|+|+.|+|..... ..+...++.   ...|++--.-+.+.
T Consensus        66 d~~~ll~~~~iDaV~I~tP~~~H~-~~~~~al~a---GkhVl~EKPla~t~  112 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTPGDSHA-EIAIAALEA---GKHVLCEKPLANTV  112 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSCGGGHH-HHHHHHHHT---TCEEEEESSSCSSH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHH-HHHHHHHHc---CCCceeecCcccch
Confidence            7776 43  589999999988763 222233332   34566654445544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.87  E-value=0.00075  Score=55.02  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |+|.|.|+ |.+|..++..|++.|++|++++|++++.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            37999995 9999999999999999999999998643

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.00092  Score=59.24  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=32.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ||.....|.|||+|..|.+.|..|++.|++|+++|++
T Consensus         1 Mm~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~   37 (382)
T 1y56_B            1 MLPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR   37 (382)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6555568999999999999999999999999999986

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.85  E-value=0.0017  Score=56.88  Aligned_cols=82  Identities=23%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhccc-CCCcEEecC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLS----QAVGTDA-PRRLRCTSN   78 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~-~~~i~~~~~   78 (297)
                      .||+|+|+|.||..++..+... +.+|+ +.|++++.+..+.+          ..|.-.    +...... ...+.+..+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~----------~~g~~~~~~~~~~v~~~~~~~~~v~~d   72 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAK----------ELGIPVYAASEEFIPRFEKEGFEVAGT   72 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHH----------HTTCCEEESSGGGHHHHHHHTCCCSCB
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHH----------hcCccccccccccceeccCCceEEcCc
Confidence            5899999999999999998875 45654 56887666554421          111000    0000000 001123445


Q ss_pred             ccc-cCCCcEEEEeccccHH
Q 022434           79 LKD-LHSADIIVEAIVESED   97 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~   97 (297)
                      +++ +.++|+|++|.|....
T Consensus        73 ~~~l~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           73 LNDLLEKVDIIVDATPGGIG   92 (334)
T ss_dssp             HHHHHTTCSEEEECCSTTHH
T ss_pred             HHHhccCCCEEEECCCcccc
Confidence            555 5689999999998764

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.81  E-value=0.0044  Score=54.16  Aligned_cols=99  Identities=15%  Similarity=0.208  Sum_probs=57.2

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec-
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDP---DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS-   77 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-   77 (297)
                      .|+||+|+|+ |.+|..+...|..+ .+++..+..+.   +.=+..    ......+  .|.          ..+.+.+ 
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~----~~~~p~~--~~~----------~~~~v~~~   66 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI----SDLHPQL--KGI----------VELPLQPM   66 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH----HHHCGGG--TTT----------CCCBEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch----HHhCccc--cCc----------cceeEecc
Confidence            3579999996 99999999999884 56777664332   110001    0000000  010          0123332 


Q ss_pred             -Ccccc-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           78 -NLKDL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        78 -~~~~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                       +.+++ +++|+||+|+|....  .+...++   ...++.++.+++..
T Consensus        67 ~~~~~~~~~~Dvvf~a~p~~~s--~~~~~~~---~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           67 SDISEFSPGVDVVFLATAHEVS--HDLAPQF---LEAGCVVFDLSGAF  109 (337)
T ss_dssp             SSGGGTCTTCSEEEECSCHHHH--HHHHHHH---HHTTCEEEECSSTT
T ss_pred             CCHHHHhcCCCEEEECCChHHH--HHHHHHH---HHCCCEEEEcCCcc
Confidence             45555 899999999986543  2333332   34567777777765

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.81  E-value=0.00095  Score=56.59  Aligned_cols=70  Identities=19%  Similarity=0.224  Sum_probs=51.1

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -+++.|||.|. +|.++|..|+..|..|++.++....++.                                     .++
T Consensus       160 Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~-------------------------------------~~~  202 (285)
T 3p2o_A          160 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSL-------------------------------------YTR  202 (285)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHH-------------------------------------HHT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHH-------------------------------------Hhh
Confidence            47899999977 6999999999999999999865322221                                     156


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.+++-..-++       .++++++++++.
T Consensus       203 ~ADIVI~Avg~p~~I~-------~~~vk~GavVID  230 (285)
T 3p2o_A          203 QADLIIVAAGCVNLLR-------SDMVKEGVIVVD  230 (285)
T ss_dssp             TCSEEEECSSCTTCBC-------GGGSCTTEEEEE
T ss_pred             cCCEEEECCCCCCcCC-------HHHcCCCeEEEE
Confidence            8999999997432222       245677887764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.80  E-value=0.002  Score=55.05  Aligned_cols=70  Identities=24%  Similarity=0.295  Sum_probs=51.7

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -+++.|||.|. +|.++|..|...|..|++.++...                                      ++++ +
T Consensus       165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~--------------------------------------~L~~~~  206 (301)
T 1a4i_A          165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------------------------------HLDEEV  206 (301)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------------------------SHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcc--------------------------------------cHHHHh
Confidence            47899999995 799999999999999999975432                                      2332 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      +.||+||.+++...-++.       ++++++++|+.-
T Consensus       207 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDV  236 (301)
T 1a4i_A          207 NKGDILVVATGQPEMVKG-------EWIKPGAIVIDC  236 (301)
T ss_dssp             TTCSEEEECCCCTTCBCG-------GGSCTTCEEEEC
T ss_pred             ccCCEEEECCCCcccCCH-------HHcCCCcEEEEc
Confidence            789999999976432222       345677777643

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.77  E-value=0.0051  Score=54.23  Aligned_cols=34  Identities=21%  Similarity=0.502  Sum_probs=30.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ..+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            3589999999999999999999997 799999863

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.77  E-value=0.007  Score=52.82  Aligned_cols=36  Identities=6%  Similarity=-0.100  Sum_probs=33.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      ++|.|+|+|..|..++..|.+.|+ |+++|+|+++++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            479999999999999999999999 999999998876

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.77  E-value=0.0049  Score=53.87  Aligned_cols=104  Identities=18%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEEEE-eC--CHHHHHHHHHHHHHHHHHHHHcCCCC-hhh---hcc-c---CCCc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWLV-DT--DPDALVRATKSISSSIQKFVSKGQLS-QAV---GTD-A---PRRL   73 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~~~-d~--~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~---~~~-~---~~~i   73 (297)
                      .||+|+|+|.+|+.++..|..+ +++|+.+ |+  +++.+....       +.--..|.+. ...   .+. .   -..+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll-------~yds~~g~~~~~~v~~~~~~~l~~~g~~i   76 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF-------KYDTVHGQWKHSDIKIKDSKTLLLGEKPV   76 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHH-------HCCTTTCCCCSSCEEESSSSEEEETTEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhh-------cccccCCCCCCCcEEeecCCeeEECCeEE
Confidence            5899999999999999998876 5676644 53  444433321       0001123322 100   000 0   0122


Q ss_pred             EEe--cCcccc----CCCcEEEEeccccHHHHHHHHHHHHhhcCCCe--EEEecCC
Q 022434           74 RCT--SNLKDL----HSADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTS  121 (297)
Q Consensus        74 ~~~--~~~~~~----~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts  121 (297)
                      .+.  .+++++    .++|+||+|.|.....  +..   ..++..++  +|++.++
T Consensus        77 ~v~~~~dp~~l~w~~~~vDvV~eaTg~~~~~--e~a---~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           77 TVFGIRNPDEIPWAEAGAEYVVESTGVFTDK--EKA---AAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             EEECCSCGGGCCHHHHTCSEEEECSSSCCSH--HHH---THHHHTTCSEEEESSCC
T ss_pred             EEEecCChHHccccccCCCEEEECCCchhhH--HHH---HHHHHcCCCEEEEecCC
Confidence            222  255654    4799999999876542  222   22233344  7776665

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.76  E-value=0.0013  Score=57.75  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALV   42 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~   42 (297)
                      .||+|+|+|.+|..++..|.++ +++++ +.|++++...
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~   40 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA   40 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence            5899999999999999998874 56765 4577755443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.75  E-value=0.0052  Score=54.01  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=33.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      -++|+|+|.|++|...|..+...|.+|+++|+++++
T Consensus       175 GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          175 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            479999999999999999999999999999999764

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.72  E-value=0.0015  Score=55.48  Aligned_cols=69  Identities=22%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -+++.|||.|. +|.++|..|...|..|++.++....                                      +++ +
T Consensus       161 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~--------------------------------------L~~~~  202 (285)
T 3l07_A          161 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTD--------------------------------------LKSHT  202 (285)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS--------------------------------------HHHHH
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh--------------------------------------HHHhc
Confidence            36899999977 7999999999999999999764322                                      222 5


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +.||+||.+++-..-++       .++++++++++.
T Consensus       203 ~~ADIVI~Avg~p~~I~-------~~~vk~GavVID  231 (285)
T 3l07_A          203 TKADILIVAVGKPNFIT-------ADMVKEGAVVID  231 (285)
T ss_dssp             TTCSEEEECCCCTTCBC-------GGGSCTTCEEEE
T ss_pred             ccCCEEEECCCCCCCCC-------HHHcCCCcEEEE
Confidence            68999999997432222       134577777664

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.71  E-value=0.0015  Score=58.40  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.....+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            554557899999999999999999999999999998754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.66  E-value=0.0038  Score=53.62  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|++.+|++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN   38 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence            68999996 999999999999999999999998543

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.64  E-value=0.0078  Score=52.86  Aligned_cols=70  Identities=21%  Similarity=0.333  Sum_probs=45.7

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||.. .+..+... +++|+ ++|++  +.+.+.+.       +-..+             +...+++++ 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~-------~~~~~-------------~~~~~~~~~l   60 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAP-------FKEKG-------------VNFTADLNEL   60 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHH-------HHTTT-------------CEEESCTHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHh-------hCCCC-------------CeEECCHHHH
Confidence            58999999999984 55555554 67775 78888  22222110       00011             246678877 


Q ss_pred             cC--CCcEEEEeccccHH
Q 022434           82 LH--SADIIVEAIVESED   97 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~   97 (297)
                      ++  +.|+|+.|+|....
T Consensus        61 l~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A           61 LTDPEIELITICTPAHTH   78 (349)
T ss_dssp             HSCTTCCEEEECSCGGGH
T ss_pred             hcCCCCCEEEEeCCcHHH
Confidence            54  48999999998775

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.63  E-value=0.036  Score=47.41  Aligned_cols=96  Identities=16%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   81 (297)
                      +-.+|..||+|..|.+... +++ .|.+|+.+|++++.++.+++.+++       .|.          .++++ ..|..+
T Consensus       122 ~g~rVLDIGcG~G~~ta~~-lA~~~ga~V~gIDis~~~l~~Ar~~~~~-------~gl----------~~v~~v~gDa~~  183 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGIL-LSHVYGMRVNVVEIEPDIAELSRKVIEG-------LGV----------DGVNVITGDETV  183 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHH-HHHTTCCEEEEEESSHHHHHHHHHHHHH-------HTC----------CSEEEEESCGGG
T ss_pred             CcCEEEEECCCccHHHHHH-HHHccCCEEEEEECCHHHHHHHHHHHHh-------cCC----------CCeEEEECchhh
Confidence            3478999999986544322 233 588999999999999888665432       121          23333 222222


Q ss_pred             c--CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           82 L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 ~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      +  ...|+|+.+..-  .-+..+++++.+.++++..++..
T Consensus       184 l~d~~FDvV~~~a~~--~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          184 IDGLEFDVLMVAALA--EPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             GGGCCCSEEEECTTC--SCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCCCcCEEEECCCc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence            2  467999876531  22567889988888887765533

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.62  E-value=0.0026  Score=54.50  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            578999998 9999999999999999999999974

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.61  E-value=0.00098  Score=56.56  Aligned_cols=70  Identities=16%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -+++.|||.|. +|.++|..|...|..|++.++....++.                                     .++
T Consensus       159 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~-------------------------------------~~~  201 (288)
T 1b0a_A          159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRH-------------------------------------HVE  201 (288)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHH-------------------------------------HHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHH-------------------------------------Hhc
Confidence            47899999996 6999999999999999999855432221                                     145


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.+++...-++.       ++++++++|+.
T Consensus       202 ~ADIVI~Avg~p~lI~~-------~~vk~GavVID  229 (288)
T 1b0a_A          202 NADLLIVAVGKPGFIPG-------DWIKEGAIVID  229 (288)
T ss_dssp             HCSEEEECSCCTTCBCT-------TTSCTTCEEEE
T ss_pred             cCCEEEECCCCcCcCCH-------HHcCCCcEEEE
Confidence            79999999975432222       23567777663

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.61  E-value=0.0037  Score=56.21  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=36.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL---DVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|+|+|.+|+.++..|++.|.   +|+++||++++++.+.+.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~   46 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS   46 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH
Confidence            589999999999999999999983   899999999988766443

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.59  E-value=0.0061  Score=44.99  Aligned_cols=82  Identities=11%  Similarity=0.071  Sum_probs=57.6

Q ss_pred             CCcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            4 KMKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         4 ~~~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..++|+|||+    +..|..+..+|.+.||+|+-+++..+.+                             ..+.+..++
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl   53 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINER   53 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSC
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCCh
Confidence            4578999999    6789999999999999999988764321                             112456677


Q ss_pred             cccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++.+.|+++.++|.+.  ..++++++.+. ....++.
T Consensus        54 ~dlp~vDlavi~~p~~~--v~~~v~e~~~~-g~k~v~~   88 (122)
T 3ff4_A           54 PVIEGVDTVTLYINPQN--QLSEYNYILSL-KPKRVIF   88 (122)
T ss_dssp             CCCTTCCEEEECSCHHH--HGGGHHHHHHH-CCSEEEE
T ss_pred             HHCCCCCEEEEEeCHHH--HHHHHHHHHhc-CCCEEEE
Confidence            77655999999998543  34566665543 2235554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.58  E-value=0.0017  Score=56.88  Aligned_cols=36  Identities=19%  Similarity=0.087  Sum_probs=32.4

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..++|.|.|+ |.+|+.++..|++.|++|++++|++.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3579999997 99999999999999999999999654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.58  E-value=0.024  Score=50.81  Aligned_cols=40  Identities=18%  Similarity=0.158  Sum_probs=35.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|+++++++++++.+
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  254 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLA  254 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            3689999999999999988888999 899999999888766

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.58  E-value=0.0035  Score=53.81  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999997 9999999999999999999999983

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.57  E-value=0.007  Score=50.46  Aligned_cols=75  Identities=12%  Similarity=0.093  Sum_probs=49.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -+||+++|.|.||+.++..  . +++++ +|+   ++   .              |.+          .+..++|.++ +
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k---~--------------gel----------gv~a~~d~d~ll   58 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI---S--------------KDI----------PGVVRLDEFQVP   58 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS---C--------------CCC----------SSSEECSSCCCC
T ss_pred             cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc---c--------------ccc----------CceeeCCHHHHh
Confidence            3799999999999999998  4 88874 666   21   1              110          2246777877 6


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++|+|++|.+..     .+-..+.+.+..+.-++
T Consensus        59 a~pD~VVe~A~~~-----av~e~~~~iL~aG~dvv   88 (253)
T 1j5p_A           59 SDVSTVVECASPE-----AVKEYSLQILKNPVNYI   88 (253)
T ss_dssp             TTCCEEEECSCHH-----HHHHHHHHHTTSSSEEE
T ss_pred             hCCCEEEECCCHH-----HHHHHHHHHHHCCCCEE
Confidence            7999999998532     22223556666655443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.56  E-value=0.0018  Score=54.93  Aligned_cols=33  Identities=21%  Similarity=0.138  Sum_probs=29.3

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -+++.|||.|. +|.++|..|+..|..|++.++.
T Consensus       161 Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          161 GMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             TCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            47899999876 8999999999999999999754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.55  E-value=0.0012  Score=58.39  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      -.||.|+|+|.+|.++|..|...|. +|+++|++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3689999999999999999999998 89999998

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.54  E-value=0.002  Score=55.81  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=32.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+....+|.|||+|.-|...|..|++.|++|+++|+++
T Consensus         1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (335)
T 2zbw_A            1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP   38 (335)
T ss_dssp             --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            55556789999999999999999999999999999864

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.53  E-value=0.003  Score=54.62  Aligned_cols=90  Identities=18%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-----e--
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-----T--   76 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~--   76 (297)
                      -+++.|||+|.| |..+|..|+..|..|++.||+..++..              +...    ...  .....     +  
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~--------------ra~~----la~--~~~~~t~~~~t~~  236 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--------------RGES----LKL--NKHHVEDLGEYSE  236 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--------------SCCC----SSC--CCCEEEEEEECCH
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh--------------HHHH----Hhh--hcccccccccccH
Confidence            468999999976 999999999999999999998432210              0000    000  00112     1  


Q ss_pred             cCccc-cCCCcEEEEeccccHH-HHHHHHHHHHhhcCCCeEEEecCC
Q 022434           77 SNLKD-LHSADIIVEAIVESED-VKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        77 ~~~~~-~~~aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .++++ +++||+||.+++-..- ++.       ++++++++++.-.+
T Consensus       237 ~~L~e~l~~ADIVIsAtg~p~~vI~~-------e~vk~GavVIDVgi  276 (320)
T 1edz_A          237 DLLKKCSLDSDVVITGVPSENYKFPT-------EYIKEGAVCINFAC  276 (320)
T ss_dssp             HHHHHHHHHCSEEEECCCCTTCCBCT-------TTSCTTEEEEECSS
T ss_pred             hHHHHHhccCCEEEECCCCCcceeCH-------HHcCCCeEEEEcCC
Confidence            34554 7899999999975422 222       23567777765444

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.52  E-value=0.0039  Score=53.37  Aligned_cols=92  Identities=16%  Similarity=0.098  Sum_probs=57.6

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +..||+|+|+ |.||..++..+.+.|++ .++..++.+.                 |.       . ...+.+..++++ 
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~-----------------g~-------~-~~G~~vy~sl~el   59 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKG-----------------GT-------T-HLGLPVFNTVREA   59 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC-------E-ETTEEEESSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcc-----------------cc-------e-eCCeeccCCHHHH
Confidence            4578999999 99999999999988998 4445554311                 00       0 112355667776 


Q ss_pred             cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .+  ++|+++.++|....  .+++.+..+. .-+.+++ -|.+++.
T Consensus        60 ~~~~~~D~viI~tP~~~~--~~~~~ea~~~-Gi~~iVi-~t~G~~~  101 (288)
T 2nu8_A           60 VAATGATASVIYVPAPFC--KDSILEAIDA-GIKLIIT-ITEGIPT  101 (288)
T ss_dssp             HHHHCCCEEEECCCGGGH--HHHHHHHHHT-TCSEEEE-CCCCCCH
T ss_pred             hhcCCCCEEEEecCHHHH--HHHHHHHHHC-CCCEEEE-ECCCCCH
Confidence            44  79999999997654  3444443332 2233343 4455655

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=96.52  E-value=0.0019  Score=57.99  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+.....|.|||+|..|...|..|++.|++|+++|+++
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            54444689999999999999999999999999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.50  E-value=0.022  Score=52.09  Aligned_cols=90  Identities=14%  Similarity=0.281  Sum_probs=59.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc----
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL----   79 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----   79 (297)
                      +.++|.|+|+|..|..+|..|. .+++|.+++.++++++.+.+.+.                     ..+....|.    
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~---------------------~~~Vi~GD~td~~  291 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELE---------------------NTIVFCGDAADQE  291 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCT---------------------TSEEEESCTTCHH
T ss_pred             cccEEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCC---------------------CceEEeccccchh
Confidence            4689999999999999999875 56999999999998877632210                     111222221    


Q ss_pred             ---cc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           80 ---KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 ---~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                         ++ +.++|++|.+..+|..  .-+...+.+......+++
T Consensus       292 ~L~ee~i~~~D~~ia~T~~De~--Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          292 LLTEENIDQVDVFIALTNEDET--NIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             HHHHTTGGGCSEEEECCSCHHH--HHHHHHHHHHTTCSEEEE
T ss_pred             hHhhcCchhhcEEEEcccCcHH--HHHHHHHHHHcCCccccc
Confidence               22 7889999998877653  222233444444444444

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=96.50  E-value=0.002  Score=57.56  Aligned_cols=36  Identities=22%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ...+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            346899999999999999999999999999998653

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.48  E-value=0.0024  Score=59.53  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~---~G~~V~~~d~~~   38 (297)
                      |+.++.+|.|||+|..|...|..|++   .|++|+++|+.+
T Consensus         1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            65566799999999999999999999   999999999853

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.46  E-value=0.0086  Score=49.78  Aligned_cols=44  Identities=30%  Similarity=0.335  Sum_probs=37.4

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +.++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   52 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ   52 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            4467778887 8999999999999999999999999887766443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.44  E-value=0.0079  Score=52.75  Aligned_cols=68  Identities=24%  Similarity=0.275  Sum_probs=51.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -.+|.|+|+|.+|...++.+...|.+|++.++++++++.+           .+.|+-          . .+ .+.+. .+
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-----------~~lGa~----------~-v~-~~~~~~~~  233 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA-----------LSMGVK----------H-FY-TDPKQCKE  233 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-----------HHTTCS----------E-EE-SSGGGCCS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HhcCCC----------e-ec-CCHHHHhc
Confidence            4689999999999999998888999999999999887765           444531          1 12 33333 23


Q ss_pred             CCcEEEEecccc
Q 022434           84 SADIIVEAIVES   95 (297)
Q Consensus        84 ~aD~Vi~~v~e~   95 (297)
                      +.|+||+++...
T Consensus       234 ~~D~vid~~g~~  245 (348)
T 3two_A          234 ELDFIISTIPTH  245 (348)
T ss_dssp             CEEEEEECCCSC
T ss_pred             CCCEEEECCCcH
Confidence            799999999865

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.44  E-value=0.014  Score=51.27  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |+...++|.|.|+ |.+|+.++..|++.|++|++.+|++++.
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   42 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   42 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh
Confidence            5433578999997 9999999999999999999999987654

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.42  E-value=0.02  Score=50.02  Aligned_cols=39  Identities=23%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEEEE-eC--CHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWLV-DT--DPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~~~-d~--~~~~~~~~   44 (297)
                      .||+|+|+|.+|+.++..+..+ +.+|+.+ |+  +++.+..+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l   46 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYM   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence            5999999999999999987764 5776644 54  56555443

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.41  E-value=0.0022  Score=56.64  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=30.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -|.|||+|.-|+..|..|+++|++|+++|+.++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            389999999999999999999999999998653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.41  E-value=0.003  Score=53.51  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC--CCcEEEEeCCHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD--GLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~   42 (297)
                      ++|.|.|+ |.+|+.++..|++.  |++|++++|++++.+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   40 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS   40 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence            36889998 99999999999998  999999999876544

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.41  E-value=0.0053  Score=50.42  Aligned_cols=44  Identities=25%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |....++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus         1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (234)
T 2ehd_A            1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL   45 (234)
T ss_dssp             ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            5444456888877 9999999999999999999999998766544

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.40  E-value=0.0029  Score=53.75  Aligned_cols=36  Identities=11%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~   41 (297)
                      |+|.|.|+ |.+|+.++..|++. |++|++.+|++++.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~   38 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV   38 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH
Confidence            36999997 99999999999998 99999999998754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.38  E-value=0.0022  Score=58.08  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|...|..|+++|++|+++|+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            579999999999999999999999999999765

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.37  E-value=0.0023  Score=58.94  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |++|.|||+|.-|..-|..|+++|++|+|++.++
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            4789999999999999999999999999999875

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.37  E-value=0.0017  Score=56.64  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=28.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC---------CCcEE-EEeCCHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD---------GLDVW-LVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~   40 (297)
                      +.||+|||+|.||..++..+.+.         +++|+ ++|++++.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~   47 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSI   47 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEE
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHh
Confidence            35899999999999999998875         55655 56777543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.35  E-value=0.083  Score=46.46  Aligned_cols=40  Identities=23%  Similarity=0.212  Sum_probs=36.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|+++++++++++.+
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  229 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRA  229 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHH
Confidence            4689999999999999999999999999999999887765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.34  E-value=0.0081  Score=49.73  Aligned_cols=46  Identities=22%  Similarity=0.147  Sum_probs=38.1

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      |....++|.|.|+ |.+|..+|..|++.|++|++.+++++..+...+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~   47 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN   47 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            5444567777787 899999999999999999999999987766543

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.34  E-value=0.0055  Score=56.84  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=32.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .|+|.|.|+ |.+|+.++..|++.|++|++++|++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            579999996 999999999999999999999998753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.30  E-value=0.062  Score=46.94  Aligned_cols=39  Identities=18%  Similarity=0.131  Sum_probs=35.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++++.+
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~  208 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA  208 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            579999999999999999999999 999999999887765

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.30  E-value=0.005  Score=49.16  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|+|+ |.+|+.++..|++.|++|++++|++++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence            68999998 999999999999999999999999764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=96.29  E-value=0.004  Score=58.29  Aligned_cols=37  Identities=24%  Similarity=0.244  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~---~G~~V~~~d~~   37 (297)
                      |.+++.+|.|||+|..|...|..|++   .|++|+++|+.
T Consensus        21 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   60 (550)
T 2e4g_A           21 MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAP   60 (550)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence            54456789999999999999999999   99999999975

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.29  E-value=0.0042  Score=52.51  Aligned_cols=70  Identities=21%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQM-GSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~m-G~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      -+++.|||.|.+ |.++|..|...  |..|++.+++...+..                                     .
T Consensus       158 gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~-------------------------------------~  200 (281)
T 2c2x_A          158 GAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPA-------------------------------------L  200 (281)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHH-------------------------------------H
T ss_pred             CCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHH-------------------------------------H
Confidence            478999999976 99999999999  8999999765432221                                     2


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      ++.||+||.+++-..-++.       ++++++++++.
T Consensus       201 ~~~ADIVI~Avg~p~~I~~-------~~vk~GavVID  230 (281)
T 2c2x_A          201 TRQADIVVAAVGVAHLLTA-------DMVRPGAAVID  230 (281)
T ss_dssp             HTTCSEEEECSCCTTCBCG-------GGSCTTCEEEE
T ss_pred             HhhCCEEEECCCCCcccCH-------HHcCCCcEEEE
Confidence            5689999999975432222       33566776663

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.27  E-value=0.0045  Score=48.61  Aligned_cols=33  Identities=30%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|..|..+|..|++.|.+|+++++++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999875

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.27  E-value=0.0031  Score=56.97  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |+.....|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            333345799999999999999999999999999998764

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.26  E-value=0.011  Score=49.14  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++.+..
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   53 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKA   53 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367888887 9999999999999999999999998776554

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.26  E-value=0.0039  Score=55.67  Aligned_cols=34  Identities=29%  Similarity=0.507  Sum_probs=31.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..+|.|||+|..|..+|..|++.|++|+++|+++
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3589999999999999999999999999999875

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.26  E-value=0.011  Score=48.95  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=34.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   51 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRA   51 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57888887 9999999999999999999999998876554

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=96.26  E-value=0.0043  Score=54.25  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ...|.|||+|..|.+.|..|++.|++|+++|+++
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3579999999999999999999999999999874

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.24  E-value=0.004  Score=55.74  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=31.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5799999999999999999999999999998764

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.23  E-value=0.014  Score=48.91  Aligned_cols=42  Identities=31%  Similarity=0.337  Sum_probs=35.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAAR   49 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            356778887 999999999999999999999999887665533

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.23  E-value=0.014  Score=48.85  Aligned_cols=42  Identities=19%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAAS   49 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            357778887 899999999999999999999999887765533

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.22  E-value=0.01  Score=52.05  Aligned_cols=82  Identities=15%  Similarity=0.259  Sum_probs=47.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC--Chhhhcc-c-CCCcEEecCc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQL--SQAVGTD-A-PRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~-~-~~~i~~~~~~   79 (297)
                      .||+|+|+|.||..++..+.++ +.+|+ +.|++++.......          +.|.-  .....+. . ...+...++.
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~----------~~g~~~~~~~~~~~~~~~~~v~v~~~~   71 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH----------RRGIRIYVPQQSIKKFEESGIPVAGTV   71 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH----------HTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHH----------hcCcceecCcCHHHHhcccccccccCH
Confidence            4899999999999999998875 35654 66777655443311          11210  0000000 0 0112233344


Q ss_pred             cc-cCCCcEEEEeccccHH
Q 022434           80 KD-LHSADIIVEAIVESED   97 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~   97 (297)
                      ++ .+++|+||+|.|....
T Consensus        72 e~l~~~vDvV~~aTp~~~s   90 (340)
T 1b7g_O           72 EDLIKTSDIVVDTTPNGVG   90 (340)
T ss_dssp             HHHHHHCSEEEECCSTTHH
T ss_pred             hHhhcCCCEEEECCCCchh
Confidence            44 4579999999987654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.21  E-value=0.011  Score=49.38  Aligned_cols=39  Identities=28%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   48 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQA   48 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56778887 8999999999999999999999998877655

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.21  E-value=0.01  Score=51.75  Aligned_cols=63  Identities=10%  Similarity=0.093  Sum_probs=46.0

Q ss_pred             CcEEEEECCChhHH-HHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGS-GIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||. ..+..+... +++|+ ++|+++++                 .             .+...+|+++
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-----------------~-------------g~~~~~~~~~   74 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-----------------E-------------GVNSYTTIEA   74 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-----------------T-------------TSEEESSHHH
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-----------------c-------------CCCccCCHHH
Confidence            36899999999998 678877775 67755 77888541                 1             1245677776


Q ss_pred             -c---CCCcEEEEeccccHH
Q 022434           82 -L---HSADIIVEAIVESED   97 (297)
Q Consensus        82 -~---~~aD~Vi~~v~e~~~   97 (297)
                       +   .+.|+|+.|+|....
T Consensus        75 ll~~~~~vD~V~i~tp~~~H   94 (330)
T 4ew6_A           75 MLDAEPSIDAVSLCMPPQYR   94 (330)
T ss_dssp             HHHHCTTCCEEEECSCHHHH
T ss_pred             HHhCCCCCCEEEEeCCcHHH
Confidence             3   358999999997654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.21  E-value=0.014  Score=48.73  Aligned_cols=40  Identities=20%  Similarity=0.177  Sum_probs=34.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   49 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDC   49 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            357778887 8999999999999999999999998876654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.20  E-value=0.013  Score=49.01  Aligned_cols=41  Identities=29%  Similarity=0.372  Sum_probs=35.9

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +.++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   49 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERV   49 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            4467888887 8899999999999999999999999877665

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.20  E-value=0.0048  Score=53.63  Aligned_cols=44  Identities=25%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ||+..++|.|.|+ |.+|+.++..|++.|++|++.+++.+..+..
T Consensus         1 ~M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~   45 (341)
T 3enk_A            1 SMSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREA   45 (341)
T ss_dssp             -CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHH
T ss_pred             CCCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHH
Confidence            3445678999986 9999999999999999999999987654433

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.20  E-value=0.045  Score=47.73  Aligned_cols=40  Identities=28%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.++.. |.+|+.+|+++++++.+
T Consensus       164 g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~  204 (348)
T 4eez_A          164 GDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA  204 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH
T ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhh
Confidence            46899999999998888887765 78999999999987765

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.19  E-value=0.0029  Score=51.38  Aligned_cols=89  Identities=17%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             CCcEEEEECCChhHHHHHHH--HHHCCCcEE-EEeCCHH-HHHH-HHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            4 KMKVMGVVGSGQMGSGIAQL--GVMDGLDVW-LVDTDPD-ALVR-ATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ...+|+|+|+|.+|..++..  +...|++++ ++|.+++ +... .           + .|.           .+...++
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~-----------i-~Gv-----------pV~~~~d  139 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTT-----------E-DGI-----------PVYGIST  139 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBC-----------T-TCC-----------BEEEGGG
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCcee-----------E-CCe-----------EEeCHHH
Confidence            34689999999999999997  345677755 7799886 4311 0           0 010           1112344


Q ss_pred             ccc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      +++ ++  +.|.+|.|+|...  .+++...+.+. .-..|+..
T Consensus       140 L~~~v~~~~Id~vIIAvPs~~--aq~v~d~lv~~-GIk~I~nF  179 (212)
T 3keo_A          140 INDHLIDSDIETAILTVPSTE--AQEVADILVKA-GIKGILSF  179 (212)
T ss_dssp             HHHHC-CCSCCEEEECSCGGG--HHHHHHHHHHH-TCCEEEEC
T ss_pred             HHHHHHHcCCCEEEEecCchh--HHHHHHHHHHc-CCCEEEEc
Confidence            444 43  5899999999765  34555554432 23445543

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=96.19  E-value=0.0042  Score=57.85  Aligned_cols=38  Identities=29%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+.....|.|||+|..|..+|..|++.|++|+++|+++
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            65555689999999999999999999999999999875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.19  E-value=0.011  Score=50.35  Aligned_cols=43  Identities=28%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            5 MKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      .+++.|+| +|.+|++++..|++.|++|++++|++++++...+.
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~  162 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS  162 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence            36899999 89999999999999999999999998877665433

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.19  E-value=0.0054  Score=52.58  Aligned_cols=88  Identities=19%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHH----CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM----DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~----~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..||+|||+|.||...+..+..    .+++++ ++|+++.    .           .+.             .+. ..|+
T Consensus         7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----a-----------~~~-------------g~~-~~~~   57 (294)
T 1lc0_A            7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----G-----------SLD-------------EVR-QISL   57 (294)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----C-----------EET-------------TEE-BCCH
T ss_pred             cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----H-----------HHc-------------CCC-CCCH
Confidence            5689999999999999888764    356655 6677531    0           000             112 3566


Q ss_pred             cc-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           80 KD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        80 ~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++ ++  +.|+|+.++|..... ..+...++.   ...+++--..+...
T Consensus        58 ~ell~~~~vD~V~i~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~  102 (294)
T 1lc0_A           58 EDALRSQEIDVAYICSESSSHE-DYIRQFLQA---GKHVLVEYPMTLSF  102 (294)
T ss_dssp             HHHHHCSSEEEEEECSCGGGHH-HHHHHHHHT---TCEEEEESCSCSCH
T ss_pred             HHHhcCCCCCEEEEeCCcHhHH-HHHHHHHHC---CCcEEEeCCCCCCH
Confidence            66 43  689999999987753 222222332   33466544444444

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.18  E-value=0.003  Score=55.11  Aligned_cols=33  Identities=27%  Similarity=0.172  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~---~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|...|..|++   .|++|+++|+++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            579999999999999999999   999999999763

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.18  E-value=0.0093  Score=49.76  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAE   50 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            456778887 8899999999999999999999999887766443

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.16  E-value=0.0046  Score=55.83  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ...|.|||+|..|.+.|..|+++|+ +|+++|+++
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            3579999999999999999999999 999999764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.15  E-value=0.006  Score=50.21  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~   40 (297)
                      .++|.|.|+ |.+|+.++..|++.|+  +|++++|++++
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~   56 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   56 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence            368999996 9999999999999999  99999998754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.15  E-value=0.0046  Score=58.03  Aligned_cols=37  Identities=16%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|.|+++.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~  385 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVC  385 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHh
Confidence            6899999999999999999999999999999987543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.14  E-value=0.014  Score=48.94  Aligned_cols=39  Identities=33%  Similarity=0.425  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (262)
T 1zem_A            8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKA   47 (262)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56778877 8999999999999999999999998876654

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.14  E-value=0.0025  Score=57.97  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCC------CcEEEEeCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDG------LDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G------~~V~~~d~~   37 (297)
                      |..+.++|.|||+|..|.+.|..|+++|      ++|++++.+
T Consensus         1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~   43 (470)
T 3i6d_A            1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS   43 (470)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECC
Confidence            6555578999999999999999999999      999999986

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.13  E-value=0.005  Score=55.19  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~   39 (297)
                      |+.. .+|.|||+|..|...|..|++.|++ |+++|+++.
T Consensus         1 M~~~-~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            1 MSEP-IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             ---C-CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCCC-CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            5443 5899999999999999999999999 999998643

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.11  E-value=0.0016  Score=53.12  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=48.7

Q ss_pred             CcEEEEECCChhHHHHHHH--HHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGSGQMGSGIAQL--GVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+|+|||+|.+|..++..  +.. |++++ ++|.++++....            -.|           -.+...+++++
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~------------i~g-----------v~V~~~~dl~e  135 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRP------------VRG-----------GVIEHVDLLPQ  135 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCE------------ETT-----------EEEEEGGGHHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhh------------hcC-----------CeeecHHhHHH
Confidence            4689999999999999985  333 77655 779888643211            000           01122445554


Q ss_pred             -cC-CCcEEEEeccccHHHHHHHHHHHHh
Q 022434           82 -LH-SADIIVEAIVESEDVKKKLFSELDK  108 (297)
Q Consensus        82 -~~-~aD~Vi~~v~e~~~~k~~~~~~l~~  108 (297)
                       ++ +.|.|+.|+|...  .+++...+.+
T Consensus       136 ll~~~ID~ViIA~Ps~~--~~ei~~~l~~  162 (211)
T 2dt5_A          136 RVPGRIEIALLTVPREA--AQKAADLLVA  162 (211)
T ss_dssp             HSTTTCCEEEECSCHHH--HHHHHHHHHH
T ss_pred             HHHcCCCEEEEeCCchh--HHHHHHHHHH
Confidence             43 6899999999754  3355555443

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.11  E-value=0.038  Score=48.48  Aligned_cols=104  Identities=13%  Similarity=0.204  Sum_probs=58.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeC---CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccC-------CCc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDT---DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAP-------RRL   73 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~~~d~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~i   73 (297)
                      +.||+|+|+|.+|+.+...|..+ .++|+.++-   +.+.+...       ++.--..|.+.... ....       ..+
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~l-------l~~ds~hg~~~~~v-~~~~~~l~v~g~~i   88 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYL-------LKYDSVHGNFNGTV-EVSGKDLCINGKVV   88 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHH-------HHCCTTTCSCSSCE-EECC-CEEETTEEE
T ss_pred             ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhh-------hcccccCCCCCCcE-EEeCCEEEECCeEE
Confidence            45899999999999999998876 577776542   33322221       10001123332110 0000       122


Q ss_pred             EEe--cCcccc----CCCcEEEEeccccHHHHHHHHHHHHhhcCCCe--EEEecCC
Q 022434           74 RCT--SNLKDL----HSADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTS  121 (297)
Q Consensus        74 ~~~--~~~~~~----~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts  121 (297)
                      .+.  .+++++    .++|+||+|+|-....     +....++..++  +|+++++
T Consensus        89 ~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           89 KVFQAKDPAEIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             EEECCSCGGGCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCC
T ss_pred             EEEecCChHHCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCC
Confidence            232  245544    5799999999865532     12345556666  8887765

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.10  E-value=0.0052  Score=54.21  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=25.2

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCC-CcEEEEe
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDG-LDVWLVD   35 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G-~~V~~~d   35 (297)
                      +||+|+| .|.+|..++..|..+. ++|+.+.
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~   40 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALA   40 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            5899999 6999999999998765 5777664

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.10  E-value=0.0079  Score=50.91  Aligned_cols=34  Identities=24%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -++|.|||+|.+|..-+..|.+.|++|++++.+.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4789999999999999999999999999998764

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.09  E-value=0.014  Score=48.38  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |..+.+++.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   45 (245)
T 1uls_A            1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (245)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5334467888887 8999999999999999999999998776544

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.09  E-value=0.041  Score=47.92  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=31.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|++++|++
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            58999998 9999999999999999999999976

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.09  E-value=0.026  Score=49.49  Aligned_cols=100  Identities=21%  Similarity=0.237  Sum_probs=53.1

Q ss_pred             CCCCCcEEEEEC-CChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            1 MEEKMKVMGVVG-SGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~I~viG-~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |+. ++||+|+| .|.+|+.+...|..+.. +++.+....+.-.+.    ..      ..+.+..      ...+.+. +
T Consensus         1 M~~-~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~----~~------~~~~~~g------~~~~~~~-~   62 (345)
T 2ozp_A            1 MTG-KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPV----HF------VHPNLRG------RTNLKFV-P   62 (345)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBG----GG------TCGGGTT------TCCCBCB-C
T ss_pred             CCC-CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchh----HH------hCchhcC------ccccccc-c
Confidence            543 46999999 59999999999987754 777664432210000    00      0000000      0111121 1


Q ss_pred             ccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      .+++.++|+||+|+|....  .+....   +...++.++++++..
T Consensus        63 ~~~~~~vDvV~~a~g~~~s--~~~a~~---~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           63 PEKLEPADILVLALPHGVF--AREFDR---YSALAPVLVDLSADF  102 (345)
T ss_dssp             GGGCCCCSEEEECCCTTHH--HHTHHH---HHTTCSEEEECSSTT
T ss_pred             hhHhcCCCEEEEcCCcHHH--HHHHHH---HHHCCCEEEEcCccc
Confidence            2235789999999997754  223322   234455566666644

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.08  E-value=0.014  Score=48.63  Aligned_cols=44  Identities=23%  Similarity=0.266  Sum_probs=36.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.+
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI   51 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            356777777 89999999999999999999999998877665443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.07  E-value=0.018  Score=47.25  Aligned_cols=44  Identities=27%  Similarity=0.354  Sum_probs=37.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL   46 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            356778887 88999999999999999999999998877664443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.07  E-value=0.018  Score=48.73  Aligned_cols=41  Identities=24%  Similarity=0.299  Sum_probs=35.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   63 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTL   63 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            356778877 89999999999999999999999988766543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.06  E-value=0.0048  Score=54.89  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            579999999999999999999999999999763

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.06  E-value=0.013  Score=49.32  Aligned_cols=42  Identities=24%  Similarity=0.344  Sum_probs=35.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   47 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATE   47 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56777787 8899999999999999999999999887766443

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.05  E-value=0.019  Score=48.45  Aligned_cols=39  Identities=18%  Similarity=0.156  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus        22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC   61 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56778887 8999999999999999999999998876654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.05  E-value=0.0078  Score=53.03  Aligned_cols=38  Identities=21%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALV   42 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~   42 (297)
                      +++|.|.|+ |.+|+.++..|++. |++|++++|+++..+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   63 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLG   63 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTG
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhh
Confidence            578999996 99999999999998 999999999876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.05  E-value=0.018  Score=47.80  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=34.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++...
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALG   48 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56778887 89999999999999999999999988776553

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.05  E-value=0.019  Score=48.39  Aligned_cols=40  Identities=15%  Similarity=0.047  Sum_probs=35.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus        31 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET   71 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHH
Confidence            367888887 8999999999999999999999998876654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.03  E-value=0.0054  Score=55.12  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999864

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.02  E-value=0.02  Score=48.08  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=36.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      -+++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   52 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL   52 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            356777776 89999999999999999999999998877664443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.02  E-value=0.058  Score=46.95  Aligned_cols=40  Identities=30%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|+..++++++++.+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  206 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLA  206 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            4689999999999999999999999999999999988765

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.01  E-value=0.014  Score=48.14  Aligned_cols=41  Identities=27%  Similarity=0.218  Sum_probs=35.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|++++++...
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVA   48 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            356777777 99999999999999999999999988766553

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.01  E-value=0.013  Score=49.07  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             CcEEEEECC-C-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGS-G-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      -++|.|.|+ | .+|..+|..|++.|++|++.++++++++...+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   65 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRD   65 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence            357888898 8 59999999999999999999999987766533

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.01  E-value=0.014  Score=51.45  Aligned_cols=38  Identities=13%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC-cEEEEeC--CHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL-DVWLVDT--DPDALVR   43 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~-~V~~~d~--~~~~~~~   43 (297)
                      |||.|.|+ |.+|+.++..|++.|+ +|+..|+  +++.++.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~   42 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELES   42 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHH
Confidence            47999996 9999999999999999 9999999  4444443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.01  E-value=0.015  Score=48.00  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.
T Consensus        15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   57 (247)
T 3i1j_A           15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQ   57 (247)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHH
Confidence            56777787 8999999999999999999999999887766443

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.01  E-value=0.015  Score=48.91  Aligned_cols=43  Identities=28%  Similarity=0.347  Sum_probs=35.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus        11 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   54 (267)
T 3t4x_A           11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEI   54 (267)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45666676 89999999999999999999999998877654443

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.01  E-value=0.045  Score=46.39  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=34.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEV   68 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            345667776 8999999999999999999999999877665

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=96.00  E-value=0.0023  Score=58.25  Aligned_cols=39  Identities=33%  Similarity=0.381  Sum_probs=33.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ||.....|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         2 mm~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            433334799999999999999999999999999998764

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=95.99  E-value=0.0095  Score=53.92  Aligned_cols=32  Identities=22%  Similarity=0.478  Sum_probs=29.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|..|+.++..|+.+|. +++++|.+
T Consensus        41 ~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D   73 (434)
T 1tt5_B           41 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   73 (434)
T ss_dssp             CCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            589999999999999999999997 79999865

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.99  E-value=0.0077  Score=50.84  Aligned_cols=36  Identities=14%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             EEEEECC-ChhHHHHHHHHHHC--CCcEEEEeCCHHHHH
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMD--GLDVWLVDTDPDALV   42 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~   42 (297)
                      +|.|.|+ |.+|+.++..|++.  |++|++.+|++++.+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   39 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ   39 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh
Confidence            4789998 99999999999998  999999999876543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.98  E-value=0.018  Score=48.71  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=35.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   53 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQ   53 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            356777877 899999999999999999999999987766543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.98  E-value=0.023  Score=47.27  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=36.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.+
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI   56 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56777777 89999999999999999999999998877664443

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.98  E-value=0.018  Score=48.77  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=34.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus        29 ~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           29 GRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADT   69 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            356778887 8999999999999999999999998876554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.96  E-value=0.064  Score=46.94  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|++.++++++++.+
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  208 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA  208 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            4689999999999999998888999999999999887765

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.96  E-value=0.012  Score=48.75  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++.++..
T Consensus        12 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   51 (255)
T 1fmc_A           12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV   51 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            57878887 9999999999999999999999998876554

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.96  E-value=0.043  Score=50.03  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=51.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecC--ccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSN--LKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--~~~   81 (297)
                      -++|.|||+|..|..-+..|.+.|.+|+++|.+...  ..        ..+.+.+.+            .+ ...  .++
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~--~~--------~~l~~~~~i------------~~~~~~~~~~~   69 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIP--QF--------TVWANEGML------------TLVEGPFDETL   69 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCH--HH--------HHHHTTTSC------------EEEESSCCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCH--HH--------HHHHhcCCE------------EEEECCCCccc
Confidence            478999999999999999999999999999986432  11        111222321            22 122  234


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHH
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSE  105 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~  105 (297)
                      +.++|+||.+. ++.++...+...
T Consensus        70 l~~~~lVi~at-~~~~~n~~i~~~   92 (457)
T 1pjq_A           70 LDSCWLAIAAT-DDDTVNQRVSDA   92 (457)
T ss_dssp             GTTCSEEEECC-SCHHHHHHHHHH
T ss_pred             cCCccEEEEcC-CCHHHHHHHHHH
Confidence            78999999864 455445555544

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=95.96  E-value=0.017  Score=49.37  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +.+||+|+|+ |.||..++..+.+.|++ .++..++...                 |.        ....+.+..++++ 
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~-----------------g~--------~i~G~~vy~sl~el   59 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKG-----------------GM--------EVLGVPVYDTVKEA   59 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC--------EETTEEEESSHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCC-----------------Cc--------eECCEEeeCCHHHH
Confidence            4578999999 99999999999988999 4445554310                 00        0112356667766 


Q ss_pred             cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .+  .+|++|.++|...  ..+++.+..+. .-..+++ -|.+++.
T Consensus        60 ~~~~~~Dv~Ii~vp~~~--~~~~~~ea~~~-Gi~~vVi-~t~G~~~  101 (288)
T 1oi7_A           60 VAHHEVDASIIFVPAPA--AADAALEAAHA-GIPLIVL-ITEGIPT  101 (288)
T ss_dssp             HHHSCCSEEEECCCHHH--HHHHHHHHHHT-TCSEEEE-CCSCCCH
T ss_pred             hhcCCCCEEEEecCHHH--HHHHHHHHHHC-CCCEEEE-ECCCCCH
Confidence            44  7999999998654  33455544332 2233444 3456655

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=95.95  E-value=0.012  Score=48.11  Aligned_cols=39  Identities=18%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   41 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTV   41 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46788887 8999999999999999999999999877665

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.95  E-value=0.017  Score=47.55  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=35.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~   43 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQ   43 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            357888887 8999999999999999999999999877665

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.94  E-value=0.02  Score=47.20  Aligned_cols=40  Identities=23%  Similarity=0.170  Sum_probs=35.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   47 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL   47 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367888888 9999999999999999999999998766544

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.93  E-value=0.038  Score=48.15  Aligned_cols=40  Identities=28%  Similarity=0.306  Sum_probs=36.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|+|+|.+|...++.+...|.+|+++++++++++.+
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  204 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA  204 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            4689999999999999999999999999999999887765

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.93  E-value=0.022  Score=47.82  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   55 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   55 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56777776 899999999999999999999999987765533

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.92  E-value=0.021  Score=47.81  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   54 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ   54 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH
Confidence            56777787 8899999999999999999999999887765443

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=95.89  E-value=0.024  Score=49.05  Aligned_cols=44  Identities=20%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.+
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            357888887 99999999999999999999999998877765443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.88  E-value=0.017  Score=48.27  Aligned_cols=40  Identities=18%  Similarity=0.101  Sum_probs=34.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   54 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNEC   54 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            356777776 9999999999999999999999998876654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=95.87  E-value=0.0088  Score=52.86  Aligned_cols=33  Identities=30%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|.+.|..|++.|++|+++|+..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999753

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.86  E-value=0.017  Score=48.45  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   52 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVA   52 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45666676 899999999999999999999999988766533

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.85  E-value=0.018  Score=48.73  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=33.0

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ||++| |+ +-+|.++|..|++.|.+|++.||+++++++.
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~   69 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAA   69 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            56665 65 7899999999999999999999999887765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.85  E-value=0.026  Score=48.10  Aligned_cols=42  Identities=21%  Similarity=0.281  Sum_probs=36.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.
T Consensus        27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   69 (302)
T 1w6u_A           27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ   69 (302)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            57888887 8999999999999999999999998877655433

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.84  E-value=0.23  Score=43.95  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=35.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...| .+|++.++++++++.+
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  236 (380)
T 1vj0_A          196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA  236 (380)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH
Confidence            468999999999999999888899 6999999999887765

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.84  E-value=0.092  Score=45.73  Aligned_cols=40  Identities=15%  Similarity=-0.018  Sum_probs=35.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...  |.+|++.++++++++.+
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~  212 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFA  212 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence            35899999999999998888888  99999999999887765

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.83  E-value=0.022  Score=48.32  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=36.8

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+-+++.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   45 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLREL   45 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH
Confidence            5444567778887 8999999999999999999999998876654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.83  E-value=0.15  Score=44.37  Aligned_cols=40  Identities=30%  Similarity=0.210  Sum_probs=34.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+... |.+|+.+|+++++++.+
T Consensus       172 g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~  212 (345)
T 3jv7_A          172 GSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA  212 (345)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            46899999999998888777666 78999999999988766

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.83  E-value=0.02  Score=47.88  Aligned_cols=42  Identities=26%  Similarity=0.258  Sum_probs=35.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.
T Consensus        30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   72 (262)
T 3rkr_A           30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE   72 (262)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56777776 9999999999999999999999999887665433

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.82  E-value=0.023  Score=48.07  Aligned_cols=40  Identities=33%  Similarity=0.400  Sum_probs=34.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   67 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRV   67 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            356777777 8999999999999999999999998876654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.81  E-value=0.0088  Score=52.75  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|..|...|..|++.|++|+++|+.
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~   49 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESG   49 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            47999999999999999999999999999985

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.81  E-value=0.088  Score=45.93  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             CcEEEEE-CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVV-GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~vi-G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+ |+|.+|...++.+...|.+|++.++++++++.+
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT  191 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            4689999 689999999999999999999999999887766

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.81  E-value=0.0065  Score=52.44  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .++|.|||+|.-|...|..|++.|++|+++|+.
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~   54 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGM   54 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            468999999999999999999999999999984

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=95.81  E-value=0.0036  Score=55.16  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=30.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+.|.|||+|..|.+.|..|+ .|++|+++|+++
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            467999999999999999999 699999999873

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.81  E-value=0.0065  Score=54.01  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~   38 (297)
                      ..|.|||+|..|.+.|..|++ +| ++|+++|+++
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 99 9999999763

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=95.80  E-value=0.024  Score=46.58  Aligned_cols=40  Identities=20%  Similarity=0.106  Sum_probs=35.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   47 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSL   47 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367888988 9999999999999999999999998766543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.79  E-value=0.13  Score=43.80  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=32.9

Q ss_pred             CcEEEEECCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            5 MKVMGVVGSG---QMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         5 ~~~I~viG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      .+++.|.|++   .+|..+|..|++.|++|++.+++++..+.
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~   71 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKR   71 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            3577888985   89999999999999999999999764443

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.79  E-value=0.022  Score=47.50  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=34.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus         8 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            8 ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQET   47 (264)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            57888887 9999999999999999999999998876654

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.79  E-value=0.021  Score=50.16  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             CCCCCcEEEEEC-CChhHHHHHHHHHHCC-CcEEEEe
Q 022434            1 MEEKMKVMGVVG-SGQMGSGIAQLGVMDG-LDVWLVD   35 (297)
Q Consensus         1 M~~~~~~I~viG-~G~mG~~iA~~l~~~G-~~V~~~d   35 (297)
                      |+ ++.||+|+| .|.+|..+...|..+. ++|+.+.
T Consensus         1 m~-~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~   36 (350)
T 2ep5_A            1 MA-DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS   36 (350)
T ss_dssp             -C-CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CC-CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            53 346999999 6999999999888754 4776663

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=95.77  E-value=0.029  Score=51.69  Aligned_cols=36  Identities=28%  Similarity=0.482  Sum_probs=32.6

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~-iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+++|.|||.|..|.+ +|..|.+.|++|.++|....
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   54 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   54 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCC
Confidence            4678999999999997 99999999999999998764

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.77  E-value=0.0099  Score=51.91  Aligned_cols=97  Identities=18%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDTDP-DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.+|...+..+ ..+++|+ ++|+++ ++.+++.+..       .+.|.           .....+|+++ +
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~-------~~~~~-----------~~~~~~~~~~ll   63 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAI-------SEMNI-----------KPKKYNNWWEML   63 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHH-------HTTTC-----------CCEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHH-------HHcCC-----------CCcccCCHHHHh
Confidence            6899999999988777666 6677766 679887 3444432211       11121           0145677777 4


Q ss_pred             C--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           83 H--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      +  +.|+|+.|+|..... ..+...++.   ...+++--.-+.+.
T Consensus        64 ~~~~vD~V~I~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~  104 (337)
T 3ip3_A           64 EKEKPDILVINTVFSLNG-KILLEALER---KIHAFVEKPIATTF  104 (337)
T ss_dssp             HHHCCSEEEECSSHHHHH-HHHHHHHHT---TCEEEECSSSCSSH
T ss_pred             cCCCCCEEEEeCCcchHH-HHHHHHHHC---CCcEEEeCCCCCCH
Confidence            3  589999999977652 222222332   23466544444444

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.77  E-value=0.022  Score=48.25  Aligned_cols=42  Identities=19%  Similarity=0.236  Sum_probs=35.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .+++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   66 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVD   66 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            356777787 899999999999999999999999987766543

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=95.77  E-value=0.007  Score=53.21  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999753

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.77  E-value=0.053  Score=47.31  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---CcEEEE-eC-CHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG---LDVWLV-DT-DPDALV   42 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G---~~V~~~-d~-~~~~~~   42 (297)
                      .||+|+|+|.+|+.+...|..++   ++|+.+ |+ +++.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~   44 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAA   44 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHH
Confidence            58999999999999999988873   666544 44 444433

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.77  E-value=0.019  Score=49.17  Aligned_cols=40  Identities=23%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++...
T Consensus        27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~   67 (297)
T 1xhl_A           27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK   67 (297)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45666676 89999999999999999999999998776553

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=95.76  E-value=0.035  Score=48.30  Aligned_cols=104  Identities=16%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEE-eC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhc---cc---CCCcEEe--
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLV-DT-DPDALVRATKSISSSIQKFVSKGQLSQAVGT---DA---PRRLRCT--   76 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~-d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~---~~~i~~~--   76 (297)
                      ||+|+|+|.+|+.+...|..+.++|+.+ |. +.+.+..+       +..--..|.+...-..   ..   -..+.+.  
T Consensus         2 kVgInG~G~IGr~vlr~l~~~~~evvaind~~~~~~~a~l-------l~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~   74 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHL-------LKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAV   74 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHH-------HHCCTTTCSCSSCEEECSSEEEETTEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHh-------hhccccCCCCCceEEEcCCEEEECCEEEEEEec
Confidence            7999999999999999887778888755 43 44444333       1111123533211000   00   1233443  


Q ss_pred             cCcccc--C--CCcEEEEeccccHHHHHHHHHHHHhhcCCCe--EEEecCCC
Q 022434           77 SNLKDL--H--SADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTSS  122 (297)
Q Consensus        77 ~~~~~~--~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~  122 (297)
                      .+++++  +  ++|+||+|.+.....  +..   ..++..++  +|+++++.
T Consensus        75 ~dp~~l~w~~~gvDiV~estG~~~s~--e~a---~~~l~aGakkvVIsaps~  121 (331)
T 2g82_O           75 KDPKEIPWAEAGVGVVIESTGVFTDA--DKA---KAHLEGGAKKVIITAPAK  121 (331)
T ss_dssp             SSGGGSCTTTTTEEEEEECSSSCCBH--HHH---THHHHTTCSEEEESSCCB
T ss_pred             CChhhCcccccCCCEEEECCCchhhH--HHH---HHHHHCCCCEEEECCCCc
Confidence            245443  3  789999999865532  112   22333445  88877664

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.76  E-value=0.019  Score=48.46  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus        31 k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~   70 (281)
T 3ppi_A           31 ASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKAL   70 (281)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            45677777 8999999999999999999999999877665

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=95.75  E-value=0.059  Score=48.39  Aligned_cols=36  Identities=8%  Similarity=0.058  Sum_probs=32.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .++|.|.|+ |.+|+.++..|++.|++|++++|+++.
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~  105 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNE  105 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCCh
Confidence            468999997 999999999999999999999998874

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.75  E-value=0.0049  Score=53.84  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC------C--CcEE-EEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMD------G--LDVW-LVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~------G--~~V~-~~d~~~~~~   41 (297)
                      ..+|+|||+|.||+.++..+.+.      |  ++|+ ++|+++++.
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~   51 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYY   51 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEE
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHh
Confidence            35899999999999999988764      2  5554 668887543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=95.75  E-value=0.019  Score=48.27  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.+
T Consensus        21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   64 (266)
T 4egf_A           21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL   64 (266)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45666676 89999999999999999999999998877664443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.74  E-value=0.0078  Score=53.99  Aligned_cols=33  Identities=24%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|.+.|..|+++|++|++++.++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            479999999999999999999999999999864

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=95.74  E-value=0.01  Score=50.22  Aligned_cols=44  Identities=32%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |....++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDL   45 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5444567777777 9999999999999999999999998876654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.74  E-value=0.0071  Score=54.19  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~   37 (297)
                      ..|.|||+|..|.+.|..|++.  |++|+++|+.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4699999999999999999999  9999999975

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.74  E-value=0.0086  Score=53.36  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|...|..|++.|++|+++|.++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   36 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   36 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            689999999999999999999999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.73  E-value=0.0098  Score=53.99  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~   38 (297)
                      ...+|+|||+|..|...|..|++.|+  +|+++|+++
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            45789999999999999999999999  999999863

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.73  E-value=0.022  Score=47.76  Aligned_cols=40  Identities=25%  Similarity=0.126  Sum_probs=33.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT-DPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.++ +++.++..
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~   62 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEV   62 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence            357888887 99999999999999999999999 77665544

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.72  E-value=0.042  Score=48.43  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .||+|+| .|.+|..+...|.++. ++++.+....+.-.+.    ..      ..+.+...    ....+.+.+ .+.++
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~----~~------~~~~~~~~----v~~dl~~~~-~~~~~   81 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSM----ES------VFPHLRAQ----KLPTLVSVK-DADFS   81 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCH----HH------HCGGGTTS----CCCCCBCGG-GCCGG
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCH----HH------hCchhcCc----ccccceecc-hhHhc
Confidence            5899999 6999999999998876 3777664332211110    00      01111000    001122222 22356


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++|+||+|+|.....  +.   ...+ ..++.++++++..
T Consensus        82 ~vDvVf~atp~~~s~--~~---a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           82 TVDAVFCCLPHGTTQ--EI---IKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             GCSEEEECCCTTTHH--HH---HHTS-CTTCEEEECSSTT
T ss_pred             CCCEEEEcCCchhHH--HH---HHHH-hCCCEEEECCccc
Confidence            899999999876642  12   2334 5567777777754

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=95.72  E-value=0.021  Score=47.45  Aligned_cols=39  Identities=28%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~   49 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAI   49 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45666676 8999999999999999999999998877655

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.71  E-value=0.024  Score=52.01  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=32.6

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~-iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+++|.|||.|.-|.+ +|..|.+.|++|.++|....
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~   53 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   53 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            4678999999999997 99999999999999998764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.71  E-value=0.017  Score=48.19  Aligned_cols=40  Identities=20%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   52 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ   52 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHH
Confidence            467888887 9999999999999999999999998765544

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.70  E-value=0.031  Score=47.86  Aligned_cols=42  Identities=26%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+.
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   74 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNG   74 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56888887 8899999999999999999999999887766443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.70  E-value=0.028  Score=47.03  Aligned_cols=39  Identities=33%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++.+..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQC   47 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            57888887 9999999999999999999999998776544

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.70  E-value=0.025  Score=46.64  Aligned_cols=39  Identities=26%  Similarity=0.235  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   42 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEET   42 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56888887 9999999999999999999999998776554

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.69  E-value=0.0066  Score=52.49  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      .+|.|||+|..|...|..|++.|++|+++|+
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            5799999999999999999999999999997

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=95.69  E-value=0.02  Score=47.73  Aligned_cols=42  Identities=21%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   55 (256)
T 3gaf_A           13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA   55 (256)
T ss_dssp             CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            45667776 8999999999999999999999999877765443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.68  E-value=0.081  Score=46.25  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|+.+|+++++++.+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~  207 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA  207 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence            4679999999999999888888998 899999999887765

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.68  E-value=0.018  Score=47.51  Aligned_cols=44  Identities=27%  Similarity=0.173  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~   44 (297)
                      |..+.++|.|.|+ |.+|..+|..|++.|++|++. +++++.++..
T Consensus         1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~   46 (247)
T 2hq1_A            1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDAT   46 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHH
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHH
Confidence            5444567888887 999999999999999999998 6776665544

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.67  E-value=0.021  Score=47.66  Aligned_cols=43  Identities=23%  Similarity=0.094  Sum_probs=36.0

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +.++|.|.|+ |.+|..+|..|++ .|++|++.+|++++.+...+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~   47 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQ   47 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHH
Confidence            3467888887 9999999999999 99999999999887665533

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.67  E-value=0.02  Score=48.43  Aligned_cols=42  Identities=21%  Similarity=0.214  Sum_probs=35.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   75 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE   75 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56777787 8999999999999999999999998877665433

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.66  E-value=0.0093  Score=50.85  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |||.|.|+ |.+|+.++..|.+.||+|++..|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            58999998 99999999999999999999998764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.66  E-value=0.01  Score=50.86  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=32.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|.|+ |.+|+.++..|++.|++|++++|++.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            578999999 99999999999999999999999864

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.65  E-value=0.14  Score=42.52  Aligned_cols=39  Identities=26%  Similarity=0.199  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   52 (263)
T 3ak4_A           13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAV   52 (263)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57888887 8999999999999999999999998766543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=95.65  E-value=0.028  Score=46.79  Aligned_cols=40  Identities=30%  Similarity=0.318  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   43 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVA   43 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            46778886 89999999999999999999999988766553

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.65  E-value=0.062  Score=47.41  Aligned_cols=40  Identities=23%  Similarity=0.175  Sum_probs=35.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|++.++++++++.+
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  232 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA  232 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            3689999999999999988888898 799999999887765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.64  E-value=0.0075  Score=51.90  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..+|.|||+|.-|...|..|++.|++|+++|+++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   40 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLP   40 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            3589999999999999999999999999999875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.64  E-value=0.021  Score=47.63  Aligned_cols=39  Identities=28%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus        15 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   54 (260)
T 2zat_A           15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRT   54 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46667776 8999999999999999999999998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	1e-37
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	1e-30
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	2e-26
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	6e-22
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	2e-21
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	2e-17
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	2e-04
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	8e-04
d3etja2	78	c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonuc	0.002

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  130 bits (326), Expect = 1e-37
 Identities = 65/182 (35%), Positives = 100/182 (54%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
            +K   V+G+G MG GIA      G  + + D +   + +     +  +   V KG+++ 
Sbjct: 3   DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTP 62

Query: 64  AVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A   +    +R T +  D  + D++VEA+VE+  VK+ + +E++   +  AILASNTS+I
Sbjct: 63  AKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SI+ LA A  RP   +GMHF NP  +M LVEVIRG  +SD     T A A++ GK  +  
Sbjct: 123 SISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVV 182

Query: 184 QD 185
            D
Sbjct: 183 ND 184

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 1e-30
 Identities = 75/190 (39%), Positives = 102/190 (53%), Gaps = 8/190 (4%)

Query: 4   KMKV--MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL 61
           K+ V  + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S++K   K   
Sbjct: 1   KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFA 60

Query: 62  SQAVGTDAPRRLR------CTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAI 115
                 D             T     +HS D++VEAIVE+  VK +LF  LDK      I
Sbjct: 61  ENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTI 120

Query: 116 LASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER 175
            ASNTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++ 
Sbjct: 121 FASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKA 180

Query: 176 FGKTVVCSQD 185
            GK  V  +D
Sbjct: 181 LGKHPVSCKD 190

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (243), Expect = 2e-26
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GFIVNR+L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+ 
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 248 VLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
             H     +  + P P L + V   + GKK G G + Y+
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 99

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.8 bits (214), Expect = 6e-22
 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GF+VNR+L P        +  GV     ID  M+     PMGP  L D +G+D       
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDF-VRIDKVME-KFGWPMGPAYLMDVVGIDTGHHGRD 58

Query: 248 VLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           V+  G     K      +    +A RLG+K G G + Y
Sbjct: 59  VMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAY 96

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 84.5 bits (209), Expect = 2e-21
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+N +++P+  E    L  G+     + D G+  G   P+   G L+  D IG+   +++
Sbjct: 7   IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL 66

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
                  LG   Y P   L +    G+
Sbjct: 67  ADQYAE-LGA-LYHPTAKLREMAKNGQ 91

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 20/204 (9%), Positives = 53/204 (25%), Gaps = 26/204 (12%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMD------GLDVWLVDTDPDALVRATKSISSSI-- 52
           +       G      +   + ++ V D         V + + DP  ++ A  S +     
Sbjct: 39  LTHSSITYGA-ELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIM 97

Query: 53  ----QKFVSKGQLSQAVGTDAPRRLR--------CTSNLKDLHSADIIVEAIVESEDVKK 100
               +   +K +            +          + + + +  ADI++  + +      
Sbjct: 98  PKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPD 157

Query: 101 KLFSELDKITKASAILASNTS---SISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR 157
            +  +        AI+    +   +               +   H    P +   V +  
Sbjct: 158 -IIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAE 216

Query: 158 GADTSDETFRATKALAERFGKTVV 181
           G   S+E       + +       
Sbjct: 217 GY-ASEEAVNKLYEIGKIARGKAF 239

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 22/190 (11%), Positives = 49/190 (25%), Gaps = 23/190 (12%)

Query: 6   KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV 65
           K   V+G G  G   A    + G  V   D D   +       +   +     G      
Sbjct: 2   KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG------ 55

Query: 66  GTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
              A   L  +     +  AD+I+   V +        +    I++   I+ +  ++   
Sbjct: 56  --TAHPDLLTSDIGLAVKDADVILIV-VPAIHHASIAANIASYISEGQLIILNPGATGGA 112

Query: 126 TRLAS--ATSRPCQVIGMHFMNPPPLMKLVE------------VIRGADTSDETFRATKA 171
                    +   +V      +     +               +      + +   A + 
Sbjct: 113 LEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQ 172

Query: 172 LAERFGKTVV 181
           +     + V 
Sbjct: 173 IGSVLPQYVA 182

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 20/187 (10%), Positives = 46/187 (24%), Gaps = 14/187 (7%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           M V GVVG G MG+ +A      G  V + +                 ++F+     +  
Sbjct: 2   MDV-GVVGLGVMGANLALNIAEKGFKVAVFNRTYSK-----------SEEFMKANASAPF 49

Query: 65  VGTDAPRRLRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            G           +         +I+     + D   +   ++ +         +     
Sbjct: 50  AGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKD 109

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
              R     +   + +GM         +          +   +   + + E         
Sbjct: 110 QGRRAQQLEAAGLRFLGMGISGGEEGARKGPAF-FPGGTLSVWEEIRPIVEAAAAKADDG 168

Query: 184 QDYAGFI 190
           +      
Sbjct: 169 RPCVTMN 175

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Length = 78

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 5  MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40
          MK + V+G+GQ+G  + Q G   G+ VW V  D + 
Sbjct: 1  MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.97
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.95
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.88
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.8
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.76
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.76
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.71
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.7
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.63
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.61
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.6
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.59
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.58
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.55
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.45
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.41
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.41
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.34
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.24
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.2
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.14
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.14
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.12
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.11
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	99.1
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.1
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.03
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.02
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.02
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.02
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.89
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.89
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.88
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.87
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.72
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.71
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.64
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.61
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.6
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.51
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.5
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.47
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.46
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.41
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.39
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.39
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.36
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.35
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.34
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.32
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.32
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.26
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.22
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.2
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.19
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.16
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.14
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.14
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.06
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.96
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.95
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.92
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.91
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.9
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.88
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.87
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.85
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.83
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.82
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.82
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.8
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.76
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.76
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.71
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.69
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.68
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.64
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.61
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.61
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.6
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.59
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.59
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.57
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.55
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.52
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.49
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.48
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.41
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.4
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.39
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.39
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.36
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.34
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.33
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.31
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.3
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.26
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.26
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.24
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.23
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.22
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.22
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.22
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.21
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.2
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.19
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.19
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.14
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.13
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.12
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.12
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.1
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.1
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.07
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.07
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.06
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.05
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.04
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.01
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.0
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.0
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.98
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.97
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.97
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.92
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.91
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.89
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.88
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.87
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.87
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.86
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.85
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.84
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.82
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.81
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.79
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.79
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.79
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.77
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.76
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.74
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.74
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.7
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.65
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.65
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.63
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.59
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.58
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.57
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.56
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.55
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.54
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.51
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.51
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.46
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.46
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.42
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.41
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.4
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.38
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.34
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.33
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.3
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.24
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.23
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.23
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.21
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.21
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.18
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.15
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.15
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.14
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.13
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.12
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.12
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.11
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.1
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.07
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.06
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.06
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.04
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.02
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.01
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.99
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.99
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.98
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.97
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.96
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.94
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.92
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.92
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.92
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.91
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.91
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.89
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.87
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.86
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.85
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.84
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.84
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.8
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.79
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.73
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.72
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.71
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.7
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.7
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.66
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.65
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.64
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.64
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.57
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.54
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.47
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.46
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.39
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.38
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.35
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	95.33
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.32
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.32
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.23
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.18
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.15
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.05
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.96
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.95
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.9
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.88
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.86
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.83
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.82
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	94.78
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.75
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.61
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.55
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	94.51
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	94.49
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.37
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	94.36
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.31
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.3
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.27
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.26
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.19
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.18
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.16
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.13
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.09
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.08
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.05
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.03
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.02
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.0
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.99
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.88
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.8
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.79
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	93.78
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	93.76
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	93.73
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	93.73
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	93.71
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.66
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.65
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.6
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	93.43
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.35
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.32
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.3
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.3
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.28
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.24
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	93.19
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.13
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	93.09
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.98
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.97
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.81
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.78
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	92.75
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.72
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	92.63
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.59
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.57
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.45
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	92.42
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	92.37
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.35
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.34
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.34
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.32
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	92.25
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.24
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.16
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	92.11
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	91.95
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	91.83
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	91.75
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	91.62
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.6
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	91.53
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.39
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.35
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.25
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.02
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	90.96
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	90.89
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	90.88
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	90.8
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.55
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.34
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.18
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	90.13
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	90.08
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	89.98
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	89.94
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	89.94
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.92
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	89.64
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.64
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	89.31
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	89.31
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	89.09
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.08
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	89.03
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	89.01
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	88.95
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.89
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	88.54
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	88.49
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	88.33
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.93
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.81
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	87.78
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.68
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	87.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	87.54
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.44
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	87.22
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	87.1
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	87.08
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	86.83
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	86.31
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	86.3
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	86.11
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.02
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	85.98
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	85.92
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	85.89
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.73
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	85.6
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	85.44
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	84.64
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	84.6
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	84.27
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	84.26
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	84.24
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	84.15
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.99
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	83.83
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	83.77
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	83.51
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	83.41
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	83.17
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	83.14
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	82.87
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	82.21
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.11
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	82.11
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.07
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	81.87
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	81.83
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	81.66
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	81.34
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	81.25
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	81.1
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.04
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	80.98
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.76
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	80.2

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=7.3e-43  Score=282.60  Aligned_cols=185  Identities=35%  Similarity=0.532  Sum_probs=179.9

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ++++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.++++++.+.+.+...+..+.++..+++.+++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~  162 (297)
                      ++||+|||++||+.++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||++++.|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeccch
Q 022434          163 DETFRATKALAERFGKTVVCSQDYA  187 (297)
Q Consensus       163 ~~~~~~~~~ll~~lg~~~i~v~d~~  187 (297)
                      +++++.+..+++.+|+.|++++|.|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-42  Score=280.99  Aligned_cols=184  Identities=39%  Similarity=0.579  Sum_probs=173.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-----hhhcccCCCcEEecC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-----AVGTDAPRRLRCTSN   78 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~i~~~~~   78 (297)
                      .++||+|||+|.||++||..++.+||+|++||++++.++.+.+++++.++.+++++....     +..+..+.++..+++
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence            378999999999999999999999999999999999999999999999999999888642     344556788999999


Q ss_pred             ccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEec
Q 022434           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR  157 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~  157 (297)
                      +++ +++||+||||+||+.++|+++|++|++.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||++
T Consensus        83 ~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~  162 (192)
T d1f0ya2          83 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIK  162 (192)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEC
T ss_pred             hHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEcC
Confidence            876 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEEEeccch
Q 022434          158 GADTSDETFRATKALAERFGKTVVCSQDYA  187 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~  187 (297)
                      ++.|++++++.+.++++.+|+.|++++|.|
T Consensus       163 g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         163 TPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            999999999999999999999999999876

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-30  Score=187.17  Aligned_cols=98  Identities=43%  Similarity=0.718  Sum_probs=93.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCC-CCCCCcHHHHH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD-SKYAPCPLLVQ  266 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~-~~~~p~~~l~~  266 (297)
                      ||++||++.++++||++++++|++++++||.+++.++|+|+|||+++|.+|+|++..+++.+.+..++ ++|+|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999988775 47899999999


Q ss_pred             HHHcCCCCcccCCcccccC
Q 022434          267 YVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       267 ~~~~g~~G~~~g~Gfy~~~  285 (297)
                      |+++|++|+|||+|||+|.
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            9999999999999999995

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.95  E-value=3.2e-28  Score=182.19  Aligned_cols=99  Identities=31%  Similarity=0.463  Sum_probs=89.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCCC-CCCCcHHHHH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDS-KYAPCPLLVQ  266 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~-~~~p~~~l~~  266 (297)
                      ||++||++.++++||+.++++| +++++||.+++ ++|+|+|||+++|.+|||++..+++.+++.++++ .+.|++++++
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG-~~~~~ID~a~~-~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~   78 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVME-KFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDA   78 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh-hccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHH
Confidence            7999999999999999999998 57999999997 7999999999999999999999999999888762 5678889999


Q ss_pred             HHHcCCCCcccCCcccccCCCC
Q 022434          267 YVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       267 ~~~~g~~G~~~g~Gfy~~~~~~  288 (297)
                      |+++|++|+|+|+|||+|+++.
T Consensus        79 mv~~g~lG~Ktg~GFY~y~~~~  100 (124)
T d1wdka1          79 LYEAKRLGQKNGKGFYAYEADK  100 (124)
T ss_dssp             HHHTTCCBTTTTBSSSEEC---
T ss_pred             HHHcCCccccCCcEeeEcCCCC
Confidence            9999999999999999997543

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.88  E-value=8.9e-23  Score=144.45  Aligned_cols=86  Identities=27%  Similarity=0.477  Sum_probs=79.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022434          188 GFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL  263 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~  263 (297)
                      ..|+||++.+++|||++++++|++ +++|||.++..|+|||+   |||+++|.+|++.+++.++.+ +++++ +|+|+++
T Consensus         5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l-~~~g~-r~~p~~~   82 (95)
T d1wdka2           5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGA-LYHPTAK   82 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCG-GGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHH-HhhCC-CCCCCHH
Confidence            459999999999999999999997 79999999999999999   999999999999999999987 45775 8999999


Q ss_pred             HHHHHHcCCCCcccCCccc
Q 022434          264 LVQYVDAGRLGKKRGIGVF  282 (297)
Q Consensus       264 l~~~~~~g~~G~~~g~Gfy  282 (297)
                      |++|++.       |+|||
T Consensus        83 L~~~~~~-------g~~Fy   94 (95)
T d1wdka2          83 LREMAKN-------GQSFF   94 (95)
T ss_dssp             HHHHHHT-------TCCSC
T ss_pred             HHHHHHh-------CcCCC
Confidence            9999865       47999

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.87  E-value=5.1e-21  Score=150.84  Aligned_cols=151  Identities=19%  Similarity=0.153  Sum_probs=116.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |||+|||+|.||.+||..|.++||+|++|||+++.++++           .+.|...           ...++.+.+++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a-----------~~~~~~~-----------~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-----------VERQLVD-----------EAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHH-----------HHhhccc-----------eeeeeccccccc
Confidence            589999999999999999999999999999999887776           4455432           345667779999


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCCCC------------c
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLM------------K  151 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~------------~  151 (297)
                      |+||.|+|..  ...++++++.+.++++++|++.++....  ..+.+..   .++++.|++.++...            .
T Consensus        59 DiIilavp~~--~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~---~~~~~~h~~~~~~~~g~~~a~~~l~~~~  133 (165)
T d2f1ka2          59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW---SGFIGGHPMAGTAAQGIDGAEENLFVNA  133 (165)
T ss_dssp             SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS---TTCEEEEECCCCSCSSGGGCCTTTTTTC
T ss_pred             ccccccCcHh--hhhhhhhhhhhhcccccceeeccccchHHHHHHHHhh---cccccceeeecccccchhhhcccccCCC
Confidence            9999999854  3678889999999999988755443322  2333322   357899998765332            1


Q ss_pred             eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          152 LVEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      .+-+++...++++.++.++++++.+|.+++++
T Consensus       134 ~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         134 PYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            23466777899999999999999999998764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=5.5e-20  Score=144.15  Aligned_cols=149  Identities=19%  Similarity=0.320  Sum_probs=107.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |||||||+|.||.+||.+|+++||+|++||+++++++.+           .+.+.             ....+.++ +++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~-------------~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV-----------IAAGA-------------ETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHH-----------HHhhh-------------hhcccHHHHHhC
Confidence            589999999999999999999999999999999988776           44443             45666666 889


Q ss_pred             CcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCC-CCcH-HHHhhhcCCCCeEEEeecCCCCCCC-------ceE
Q 022434           85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTS-SISI-TRLASATSRPCQVIGMHFMNPPPLM-------KLV  153 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts-~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~v  153 (297)
                      ||+||.|+|++.+++..++.  .+....+++++|+..++ .+.. .++++.+...    +.||++.|-..       +..
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~----g~~~vdapv~gg~~~a~~g~l  132 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK----GVEMLDAPVSGGEPKAIDGTL  132 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT----TCEEEECCEESHHHHHHHTCE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHc----CCceecccccCChhHHhcCCe
Confidence            99999999998887665553  36666777776663333 3222 3455544221    34444443111       123


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      .++.+  ++++.+++++++|+.++.++++++
T Consensus       133 ~~~~g--G~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         133 SVMVG--GDKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEEc--CCHHHHHHHHHHHHHhcCceEECC
Confidence            34554  689999999999999999998874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.77  E-value=1.5e-17  Score=131.35  Aligned_cols=152  Identities=20%  Similarity=0.241  Sum_probs=115.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      |++|+|||+|.||.+||..|.+.|+  +|++||++++.++.+           .+.|...           ...++.+. 
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a-----------~~~~~~~-----------~~~~~~~~~   58 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-----------VDLGIID-----------EGTTSIAKV   58 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH-----------HHhhcch-----------hhhhhhhhh
Confidence            3589999999999999999999996  688899999988776           4555432           23444443 


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCCCC--------
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLM--------  150 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~--------  150 (297)
                       ..++|+||.|+|.+.  ..+++.++.+.+++++++...+|....  ..+...+  +.++++.||+..+...        
T Consensus        59 ~~~~~dlIila~p~~~--~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~  134 (171)
T d2g5ca2          59 EDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN  134 (171)
T ss_dssp             GGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred             hccccccccccCCchh--hhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence             457999999999543  557888899999999988876665433  4455444  3579999997654221        


Q ss_pred             ----ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEE
Q 022434          151 ----KLVEVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       151 ----~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                          ..+-++++..++++.++.++++++.+|.+++.
T Consensus       135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence                23457778889999999999999999998875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=2.2e-18  Score=135.00  Aligned_cols=153  Identities=18%  Similarity=0.287  Sum_probs=104.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      |+||+|||+|.||.+||.+|+++||+|.+||+++++.+.+           .+.+.             ....++.+ ++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~-----------~~~~~-------------~~~~~~~e~~~   56 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-----------VAAGA-------------SAARSARDAVQ   56 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHTTC-------------EECSSHHHHHT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhh-----------hhhhc-------------cccchhhhhcc
Confidence            3689999999999999999999999999999999987766           44443             34455554 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHH---HHhhcCCCeEEE-ecCCCCcH-HHHhhhcC-CCCeEEEeecCCCCCC--CceEEE
Q 022434           84 SADIIVEAIVESEDVKKKLFSE---LDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPPPL--MKLVEV  155 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~---l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vei  155 (297)
                      .+|+|+.|++.+.... +++..   +.....++.+|+ ++|+.+.. .++++.+. +..+++.......|..  .+...+
T Consensus        57 ~~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          57 GADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             SCSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             ccCeeeecccchhhHH-HHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            9999999999887654 44432   455566666555 33333332 34555442 2234444333332211  112344


Q ss_pred             ecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          156 IRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      +.+  ++++++++++++++.+++++++++
T Consensus       136 ~~g--G~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         136 MVG--GDAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEE--SCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             Eec--CCHHHHHHHHHHHHHHcCccEECc
Confidence            444  689999999999999999998864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.76  E-value=2.1e-17  Score=127.90  Aligned_cols=148  Identities=19%  Similarity=0.270  Sum_probs=116.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      |||+|||+|+||.+|+..|.++| ++|.++||++++++.+.+          +.|             +...++.+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~----------~~~-------------~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEK----------ELG-------------VETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHH----------HTC-------------CEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhh----------hcc-------------cccccccccccc
Confidence            58999999999999999998887 999999999998876621          112             256777888899


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-EecCCCCcH
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGADTSD  163 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~~~~~~~  163 (297)
                      +|+||.|++.  ....++++   +..+.+.+++|...+.+++.+.+.+....+++..++..|......+. +..+...++
T Consensus        58 ~Div~lavkP--~~~~~v~~---~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVKP--QDMEAACK---NIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSCH--HHHHHHHT---TCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecCH--HHHHHhHH---HHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            9999999963  22233433   33445778889999999999999887667788899888876666554 556666789


Q ss_pred             HHHHHHHHHHHHcCCeEE
Q 022434          164 ETFRATKALAERFGKTVV  181 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~i  181 (297)
                      +..+.++++|+.+|+..+
T Consensus       133 ~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999997654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.71  E-value=3.1e-17  Score=126.85  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=112.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |||+|||+|+||.+|+..|.++|++|++++|++++.+...+          +.|.             ..+.+.++ ++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~----------~~g~-------------~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAE----------QLAL-------------PYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHH----------HHTC-------------CBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcc----------ccce-------------eeechhhhhhhc
Confidence            58999999999999999999999999999999988766521          1232             34556655 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc-eEEEecCCCCcH
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIRGADTSD  163 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vei~~~~~~~~  163 (297)
                      ||+||.|++.+.  ..+++    +.+.++.+|+|.+++++++.+.+.+....+++..+|..|..+.. ...+..+...++
T Consensus        58 ~dvIilavkp~~--~~~vl----~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIKPQL--FETVL----KPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSCGGG--HHHHH----TTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecchHh--HHHHh----hhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            999999996432  23343    34566778888999999999998887666788888765554433 345666777899


Q ss_pred             HHHHHHHHHHHHcCCeE
Q 022434          164 ETFRATKALAERFGKTV  180 (297)
Q Consensus       164 ~~~~~~~~ll~~lg~~~  180 (297)
                      +..+.++++|+.+|+..
T Consensus       132 ~~~~~v~~l~~~~G~~~  148 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTF  148 (152)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            99999999999999754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=1.1e-16  Score=123.89  Aligned_cols=140  Identities=17%  Similarity=0.235  Sum_probs=105.9

Q ss_pred             CCCCCcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            1 MEEKMKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+..++||+||| +|.||.+||.+|.++||+|++||++++.....                                   
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~-----------------------------------   49 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES-----------------------------------   49 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH-----------------------------------
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccch-----------------------------------
Confidence            566789999999 89999999999999999999999987533221                                   


Q ss_pred             cccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCCCCc----eE
Q 022434           80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK----LV  153 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~----~v  153 (297)
                       .++++|+++.++|...  ...++.++.+..+++++++..+|.-+.  ..+.+..  +.++++.||+..|....    .+
T Consensus        50 -~~~~~~~v~~~~~~~~--~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~--~~~~v~~hP~~Gp~~~~~~g~~~  124 (152)
T d2pv7a2          50 -ILANADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVV  124 (152)
T ss_dssp             -HHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEE
T ss_pred             -hhhhccccccccchhh--heeeeecccccccCCceEEEecccCHHHHHHHHHHc--cCCEEEecccCCCcccccCCcEE
Confidence             1457899999998654  456788888888888887755443322  4454443  46899999988775432    33


Q ss_pred             EEecCCCCcHHHHHHHHHHHHHcCCeEEE
Q 022434          154 EVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~  182 (297)
                      -++++  ++++.++++.++|+.+|.+++.
T Consensus       125 v~~~g--~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         125 VRCDG--RFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             EEEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred             EEecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence            34444  5778899999999999998874

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.63  E-value=1.4e-16  Score=130.90  Aligned_cols=175  Identities=12%  Similarity=0.115  Sum_probs=123.1

Q ss_pred             cEEEEECCCh--hHHHHHH------HHHHCCCcEEEEeCCHHHH-HHHHH--------HHHHHHHHHHHcCCCChhhhcc
Q 022434            6 KVMGVVGSGQ--MGSGIAQ------LGVMDGLDVWLVDTDPDAL-VRATK--------SISSSIQKFVSKGQLSQAVGTD   68 (297)
Q Consensus         6 ~~I~viG~G~--mG~~iA~------~l~~~G~~V~~~d~~~~~~-~~~~~--------~~~~~~~~~~~~g~~~~~~~~~   68 (297)
                      .++.++|+|.  ||.+|++      +|++.|+.|++.|.++++. +++.+        .+++...+..+.....+.....
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            4577888886  8888888      6899999999999998764 43332        2222222333333222111111


Q ss_pred             cC----CCcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCC-CCeEE
Q 022434           69 AP----RRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSR-PCQVI  139 (297)
Q Consensus        69 ~~----~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~-~~~~~  139 (297)
                      .+    ..+.+++|..+ +++||+||+|+|+. +.+.+++++|.+.+++++||+..+ ++++   .++.+.+.. +.+++
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~~g~Iiid~S-Ti~~~~~~~l~e~l~~kgi~vi  198 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHAC-TIPTTKFAKIFKDLGREDLNIT  198 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTCEEEECS-SSCHHHHHHHHHHTTCTTSEEE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCCCCcEEEecC-CCcHHHHHHHHHhcccCCCEEE
Confidence            11    22567777766 99999999999976 447788999999999999987444 4433   456666643 56899


Q ss_pred             EeecCCCCCCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434          140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       140 g~h~~~p~~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v  183 (297)
                      +.||+.+|...+...++.+ .++++.++++.++|+.+|++++++
T Consensus       199 ~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         199 SYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             ECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            9999999876665554443 489999999999999999998875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=2.3e-16  Score=122.11  Aligned_cols=143  Identities=10%  Similarity=0.029  Sum_probs=92.5

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCcE
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADI   87 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~   87 (297)
                      |+|||+|+||.+|+..|.+.++.+.+|+|++++++++           .+.+..            .+.+..+.++.+|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l-----------~~~~~~------------~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNL-----------AEVYGG------------KAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHH-----------HHHTCC------------CCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcch-----------hhcccc------------cccchhhhhccCcE
Confidence            7999999999999999877655567999999988876           333321            12333344899999


Q ss_pred             EEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCC-------ceEEEecCCC
Q 022434           88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM-------KLVEVIRGAD  160 (297)
Q Consensus        88 Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~-------~~vei~~~~~  160 (297)
                      ||.|+|++.  ..++..++   ..++.++++.++..+.+.+...     ...+.||+.++...       +..-++.  +
T Consensus        59 Vil~v~d~~--i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  126 (153)
T d2i76a2          59 VFVIVPDRY--IKTVANHL---NLGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFGL--E  126 (153)
T ss_dssp             EEECSCTTT--HHHHHTTT---CCSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEEE--C
T ss_pred             EEEeccchh--hhHHHhhh---cccceeeeecccchhhhhhhhh-----ccccceeeeecccccchhhhccCcEEEE--e
Confidence            999999764  33444433   3467788877777676544332     34567876644211       1111222  2


Q ss_pred             CcHHHHHHHHHHHHHcCCeEEEecc
Q 022434          161 TSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       161 ~~~~~~~~~~~ll~~lg~~~i~v~d  185 (297)
                      ++++.++.++++++.+|.+++++.+
T Consensus       127 gd~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         127 GDERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             CCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCC
Confidence            5788999999999999999988754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.60  E-value=1.5e-15  Score=120.24  Aligned_cols=154  Identities=12%  Similarity=0.111  Sum_probs=100.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC---c-cc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN---L-KD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~-~~   81 (297)
                      .+|+|||+|.||.+||.+|+++||+|++|||++++++.+           .+.+...        .......+   . +.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~--------~~~~~a~~~~~~~~~   63 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDF-----------LANEAKG--------TKVLGAHSLEEMVSK   63 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHH-----------HHTTTTT--------SSCEECSSHHHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHhcccc--------ccccchhhhhhhhhh
Confidence            579999999999999999999999999999999988876           3433211        01112222   2 23


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-H-HHHhhhcC-CCCeEEEeecCCCCCC-CceEEEec
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-I-TRLASATS-RPCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~-~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vei~~  157 (297)
                      +..+|.+|.+++....+. .++..+.+.++++.+++..++..+ . .++++.+. ...+++.......|.. .....++.
T Consensus        64 ~~~~~~ii~~~~~~~~v~-~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~  142 (176)
T d2pgda2          64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMP  142 (176)
T ss_dssp             BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             hcccceEEEecCchHHHH-HHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEc
Confidence            778999999999887654 456777777888777663333222 2 34444442 2233433322221110 00113444


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEE
Q 022434          158 GADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i  181 (297)
                      +  ++++++++++++|+.++.++.
T Consensus       143 g--G~~~~~~~~~~il~~~~~kv~  164 (176)
T d2pgda2         143 G--GNKEAWPHIKAIFQGIAAKVG  164 (176)
T ss_dssp             E--ECTTTHHHHHHHHHHHSCBCT
T ss_pred             C--CCHHHHHHHHHHHHHHhcccC
Confidence            4  688999999999999998763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.59  E-value=3.4e-15  Score=118.38  Aligned_cols=157  Identities=15%  Similarity=0.156  Sum_probs=101.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc----c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK----D   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~   81 (297)
                      |||||||+|.||.+||.+|+++||+|.+|||++++.+.+           .+.+......     ..+....+.+    .
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l-----------~~~~~~~~~~-----~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEF-----------MKANASAPFA-----GNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHH-----------HHHTTTSTTG-----GGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHcCCccccc-----cchhhhhhhhHHHHh
Confidence            589999999999999999999999999999999988876           4444422111     1112222222    2


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcC-CCCeEEEeecCCCCCC-CceEEEec
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vei~~  157 (297)
                      +..++.++.+++....+. .++..+...+.++.+++ ++|+.... .++++.+. ....++....+..|.. .....++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mv  144 (178)
T d1pgja2          66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFP  144 (178)
T ss_dssp             BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             cccceEEEEeecCcchhh-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEe
Confidence            567888899888777654 44556666667766665 33333332 34555542 3345555544433211 11113444


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCeEE
Q 022434          158 GADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       158 ~~~~~~~~~~~~~~ll~~lg~~~i  181 (297)
                      +  ++++++++++++|+.+++++.
T Consensus       145 g--G~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         145 G--GTLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             E--ECHHHHHHHHHHHHHHSCBCT
T ss_pred             e--CCHHHHHHHHHHHHHHhcccc
Confidence            4  689999999999999998875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=6.6e-16  Score=119.89  Aligned_cols=144  Identities=15%  Similarity=0.222  Sum_probs=99.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCc
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      ||+|||+|.||.+||.+|+++|+.| +|++++++....           .+.+.             ......+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~-----------~~~~~-------------~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRH-----------QEEFG-------------SEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHH-----------HHHHC-------------CEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHH-----------HHHcC-------------Cccccccccccee
Confidence            7999999999999999999999866 677777765544           22221             1345556688999


Q ss_pred             EEEEeccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc--------eEEEe
Q 022434           87 IIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK--------LVEVI  156 (297)
Q Consensus        87 ~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~--------~vei~  156 (297)
                      ++|.++|.+.++.. ....+.....++.+++ ++|+++.. .++++.+..    .+.+|++.| +.+        .+.++
T Consensus        57 ~~i~~~~~~~~v~~-~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~----~gi~~ldap-VsGg~~~A~~G~L~~~  130 (156)
T d2cvza2          57 VIFTCLPTTREVYE-VAEALYPYLREGTYWVDATSGEPEASRRLAERLRE----KGVTYLDAP-VSGGTSGAEAGTLTVM  130 (156)
T ss_dssp             EEEECCSSHHHHHH-HHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHT----TTEEEEECC-EESHHHHHHHTCEEEE
T ss_pred             EEEecccchhhhhh-hhccccccccccccccccccCCHHHHHHHHHHHHH----cCCeEEecc-ccCchhhhccCCEEEE
Confidence            99999998876543 4556666666777665 33333332 356555532    145666665 221        23455


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434          157 RGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~  184 (297)
                      .+  ++++++++++++| .+++++++++
T Consensus       131 vg--G~~~~~~~~~p~L-~~~~~v~~~G  155 (156)
T d2cvza2         131 LG--GPEEAVERVRPFL-AYAKKVVHVG  155 (156)
T ss_dssp             EE--SCHHHHHHHGGGC-TTEEEEEEEE
T ss_pred             Ee--CCHHHHHHHHHHH-HhcCcCEEeC
Confidence            55  7999999999999 4899999886

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.55  E-value=2.1e-15  Score=116.52  Aligned_cols=148  Identities=12%  Similarity=0.142  Sum_probs=95.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |||+|||+|.||.+||..|+++||+|++||+++.......           ..+.             .+..+.++ +++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~-----------~~~~-------------~~~~~~~e~~~~   56 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIER-----------ARTV-------------GVTETSEEDVYS   56 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHH-----------HHHH-------------TCEECCHHHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHh-----------hhcc-------------cccccHHHHHhh
Confidence            5899999999999999999999999999998876654431           1111             12344555 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-HHHHhhhcCCCCeEEEeecCCCCCCC--ceEEEecCCCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-ITRLASATSRPCQVIGMHFMNPPPLM--KLVEVIRGADT  161 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~~l~~~~~~~~~~~g~h~~~p~~~~--~~vei~~~~~~  161 (297)
                      ||+||.|+|.+...  ++..++.... ...++..+|.+.. ..++++.+.. .+++....+.+|...  ...-++.|  .
T Consensus        57 ~diIi~~v~~~~~~--~~~~~~~~~~-~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G--~  130 (152)
T d1i36a2          57 CPVVISAVTPGVAL--GAARRAGRHV-RGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASG--R  130 (152)
T ss_dssp             SSEEEECSCGGGHH--HHHHHHHTTC-CSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEES--T
T ss_pred             cCeEEEEecCchHH--HHHHhhcccC-CceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEEC--C
Confidence            99999999987543  3444555543 3455544444433 3567776643 356666666554211  12234555  3


Q ss_pred             cHHHHHHHHHHHHHcCCeEEEeccch
Q 022434          162 SDETFRATKALAERFGKTVVCSQDYA  187 (297)
Q Consensus       162 ~~~~~~~~~~ll~~lg~~~i~v~d~~  187 (297)
                      +.+.++    .+..+|.++.++++.|
T Consensus       131 ~~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         131 DAEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             THHHHH----GGGGGTCEEEECSSST
T ss_pred             CHHHHH----HHHHcCCeeeEcCCCC
Confidence            444444    3678899998888765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.45  E-value=2.7e-13  Score=107.51  Aligned_cols=101  Identities=17%  Similarity=0.229  Sum_probs=75.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh--hhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ--AVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +||+|||+|.||.++|..|+++||+|++||+++++++...           +.+....  ............+++.++ +
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-----------DRGAIIAEGPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence            6899999999999999999999999999999998877652           2221110  001111122344566665 8


Q ss_pred             CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      +++|+||.++|...  ...++.++.+++.++++|...
T Consensus        71 ~~aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 KDADVILIVVPAIH--HASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEES
T ss_pred             cCCCEEEEEEchhH--HHHHHHHhhhccCCCCEEEEe
Confidence            99999999999776  568899999999998877643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.41  E-value=6.8e-13  Score=105.63  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=78.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCccc-
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~-   81 (297)
                      .|+||+|||+|.||.++|..|+++||+|++|+|+++.++...+.           +.... ..--....++.+++++++ 
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~-----------~~n~~yl~~~~l~~~i~~t~~l~~a   74 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK-----------RENVLFLKGVQLASNITFTSDVEKA   74 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH-----------TBCTTTSTTCBCCTTEEEESCHHHH
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc-----------ccccccccccccccccccchhhhhc
Confidence            35789999999999999999999999999999999887765321           11000 001123467889999887 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhh-----cCCCeEEEecCCCCc
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKI-----TKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-----~~~~~ii~s~ts~~~  124 (297)
                      ++++|+||.++|...  .+.+++++.+.     ...+.++++.+.++.
T Consensus        75 ~~~ad~iiiavPs~~--~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie  120 (189)
T d1n1ea2          75 YNGAEIILFVIPTQF--LRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  120 (189)
T ss_dssp             HTTCSCEEECSCHHH--HHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             cCCCCEEEEcCcHHH--HHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence            899999999999543  55677766542     345666666666664

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.41  E-value=3.7e-12  Score=102.57  Aligned_cols=159  Identities=14%  Similarity=0.171  Sum_probs=96.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |||+|||+|.+|.++|..|+++||+|++||.|+++++.+.+.        ....+.+...            ..++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~------------~~~~~~~~   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQ------------TGRLSGTT   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEEES
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhc------------ccccccCC
Confidence            589999999999999999999999999999999988876321        1111222222            24557888


Q ss_pred             Cccc-cCCCcEEEEeccccH--------HHHHHHHHHHHhh---cCCCe-EEEecCCCCcHH-HHhh-----hcCC--CC
Q 022434           78 NLKD-LHSADIIVEAIVESE--------DVKKKLFSELDKI---TKASA-ILASNTSSISIT-RLAS-----ATSR--PC  136 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~---~~~~~-ii~s~ts~~~~~-~l~~-----~~~~--~~  136 (297)
                      +.++ +++||+++.|+|.+.        .....+...+...   ..++. |+..+|..+..+ .+..     ....  ..
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~  148 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGV  148 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTT
T ss_pred             CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccc
Confidence            8876 899999999998742        2223344443332   33444 444444433332 2211     1111  01


Q ss_pred             e-EEEeecCCCCCCCce---------E-EEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 022434          137 Q-VIGMHFMNPPPLMKL---------V-EVIRGADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       137 ~-~~g~h~~~p~~~~~~---------v-ei~~~~~~~~~~~~~~~~ll~~lg~~~i  181 (297)
                      . .+.   ++|..+.+.         - -|+.+  .+++..+.++++++.+...++
T Consensus       149 ~~~~~---~~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii  199 (202)
T d1mv8a2         149 DFGVG---TNPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPII  199 (202)
T ss_dssp             TBEEE---ECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEE
T ss_pred             cccch---hhhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeE
Confidence            1 111   233332221         1 13333  578899999999999876654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.34  E-value=1.4e-12  Score=103.16  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~-   81 (297)
                      |+|+|||+|.||.++|..|+++|++|.+|.|+.  +.++..            ..+...+ -.......++..+++.++ 
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i------------~~~~~~~~~~~~~~~~~i~~~~~~~~~   68 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSI------------SAGREHPRLGVKLNGVEIFWPEQLEKC   68 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHH------------HTTCCBTTTTBCCCSEEEECGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHH------------hhhhhhhhhcchhccccccccccHHHH
Confidence            589999999999999999999999999998853  333332            1221111 111111233455677766 


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      ++++|+||.++|...  ...+++++.+++++..++..+
T Consensus        69 ~~~ad~Ii~avps~~--~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          69 LENAEVVLLGVSTDG--VLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             HTTCSEEEECSCGGG--HHHHHHHHTTTCCSCEEEECC
T ss_pred             Hhccchhhcccchhh--hHHHHHhhccccccceecccc
Confidence            899999999999654  678899999998887766543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.24  E-value=6.2e-11  Score=89.84  Aligned_cols=124  Identities=19%  Similarity=0.183  Sum_probs=77.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+||+|||+|.+|.++|..|+..|  .+|+++|+++++++.....+++.        .      .........+.++++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a--------~------~~~~~~~~~~~d~~~   69 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA--------Q------AFTAPKKIYSGEYSD   69 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG--------G------GGSCCCEEEECCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc--------c------cccCCceEeeccHHH
Confidence            3579999999999999999999988  48999999998665332221111        0      011123456778889


Q ss_pred             cCCCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEE-EecCCCCcHHHHhhhcCCC-CeEEEe
Q 022434           82 LHSADIIVEAIVES--------------EDVKKKLFSELDKITKASAIL-ASNTSSISITRLASATSRP-CQVIGM  141 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii-~s~ts~~~~~~l~~~~~~~-~~~~g~  141 (297)
                      +++||+||.+....              ..+.+++..+|.+.++...++ +||...+....+.+....| .|++|+
T Consensus        70 ~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          70 CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            99999999986321              224455666677766544332 2333322223444444433 567664

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.20  E-value=1.9e-10  Score=87.45  Aligned_cols=125  Identities=15%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .-+||+|||+|.+|..+|..++..|+  ++.++|+++++++.....+.+.      . .+      ........+.++++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~------~-~~------~~~~~~~~~~d~~~   71 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG------K-VF------APKPVDIWHGDYDD   71 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH------T-TS------SSSCCEEEECCGGG
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC------c-cc------cCCCeEEEECCHHH
Confidence            45799999999999999999999886  7999999998765432222211      0 00      01122234678888


Q ss_pred             cCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcHHHHhhhcCCC-CeEEEe
Q 022434           82 LHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA-SNTSSISITRLASATSRP-CQVIGM  141 (297)
Q Consensus        82 ~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~l~~~~~~~-~~~~g~  141 (297)
                      +++||+||.+...              +..+.+++..+|.++++...++. ||...+-...+.+....| .|++|+
T Consensus        72 l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             hccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            9999999987632              23445566677888876544332 333332223333333333 577764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.14  E-value=1.3e-10  Score=88.84  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=80.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+++.+||+|||+|.+|..+|..++..++ +++++|.++++++.....+.+.....   +         ....+..+++.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~---~---------~~~~~~~~~~~   70 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSY   70 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSH
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcccc---C---------CeeEEeccCch
Confidence            67778999999999999999999988886 89999999987765544444332111   1         11223455666


Q ss_pred             cc-cCCCcEEEEecc------------c-------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCC-CC
Q 022434           80 KD-LHSADIIVEAIV------------E-------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PC  136 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~------------e-------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~  136 (297)
                      ++ +++||+||.+..            +       +..+.+++..++.++++. ++++.-|.....  ..+.+.... +.
T Consensus        71 ~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~  149 (154)
T d1pzga1          71 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTN  149 (154)
T ss_dssp             HHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGG
T ss_pred             hhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChh
Confidence            54 899999998762            1       122445566667777654 554434433332  233333333 35


Q ss_pred             eEEEe
Q 022434          137 QVIGM  141 (297)
Q Consensus       137 ~~~g~  141 (297)
                      |++|+
T Consensus       150 rViG~  154 (154)
T d1pzga1         150 MICGM  154 (154)
T ss_dssp             GEEEC
T ss_pred             cEecC
Confidence            67664

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.4e-11  Score=95.72  Aligned_cols=104  Identities=11%  Similarity=0.055  Sum_probs=73.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |||+|||+|.||+.+|..|+++||+|++++|+++..+..           ...+.    +. .........++.+.+..+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-----------~~~~~----~~-~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVET----DG-SIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECT----TS-CEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-----------ccccC----Cc-cccccccccchhhhhccc
Confidence            589999999999999999999999999999997643321           00010    00 000111233444557899


Q ss_pred             cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHH
Q 022434           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR  127 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~  127 (297)
                      |+||.+++...  ...+++.+.+...++++|++...++...+
T Consensus        65 D~iii~vka~~--~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             ceEEEeecccc--hHHHHHhhccccCcccEEeeccCcccHHH
Confidence            99999998644  45678888888888888877777776543

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.12  E-value=4.8e-10  Score=84.43  Aligned_cols=123  Identities=19%  Similarity=0.247  Sum_probs=77.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.+|.++|..++..|.  ++.++|+++++++.....+++....   .         ....++..+.++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~---~---------~~~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG---I---------DKYPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT---T---------TCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccc---c---------CCCCccccCCCHHHhc
Confidence            589999999999999999998884  7999999998765433333322110   0         1123456677899999


Q ss_pred             CCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-H-HHhhhcCC-CCeEEEe
Q 022434           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI-T-RLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~-~l~~~~~~-~~~~~g~  141 (297)
                      +||+||.+...              +..+.+++..++.+.+ ++++++..|....+ . .+.+.... +.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            99999987631              1223344445566665 45665544444433 2 23333333 3567664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.11  E-value=2.3e-10  Score=86.44  Aligned_cols=123  Identities=16%  Similarity=0.168  Sum_probs=76.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|.++|..++..|  .+++++|+++++++.....+++....            .....++..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~------------~~~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV------------GLFDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccch------------hcccceEEecCCHHHhc
Confidence            58999999999999999999998  48999999998765443222211110            01123445578888899


Q ss_pred             CCcEEEEecc--c------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCC-CCeEEEe
Q 022434           84 SADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      +||+|+.+..  .            +..+.+++...+.++++ +++++.-|.....  ..+.+.... +.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence            9999999862  1            12334555666777775 5555433332222  223333233 3567764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.10  E-value=7.6e-10  Score=83.32  Aligned_cols=123  Identities=16%  Similarity=0.247  Sum_probs=77.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .||+|||+|.+|+.+|..++..|+  ++.++|+++++++.....+++.        .     ......++..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a--------~-----~~~~~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG--------S-----SFYPTVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT--------G-----GGSTTCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc--------c-----ccCCCceeecCCCHHHhh
Confidence            589999999999999999999986  8999999998765432222221        0     001123455677888899


Q ss_pred             CCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEE-EecCCCCcHHHHhhhcCC-CCeEEEe
Q 022434           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAIL-ASNTSSISITRLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii-~s~ts~~~~~~l~~~~~~-~~~~~g~  141 (297)
                      +||+||.+.-.              +..+.+++..+|.++++...++ +||...+....+.+.... +.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            99999987622              2334555666677776554433 344333222333333333 3567764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.10  E-value=2.6e-10  Score=86.28  Aligned_cols=121  Identities=15%  Similarity=0.317  Sum_probs=74.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|.++|..++..|.  ++.++|+++++++.....+.+...   .          ........+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~---~----------~~~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---N----------LEAHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---G----------SSSCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc---c----------cCCccceeccCHHHhc
Confidence            799999999999999999998874  899999999876544323322210   0          0112223467888899


Q ss_pred             CCcEEEEeccc------------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCC-CeEEE
Q 022434           84 SADIIVEAIVE------------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIG  140 (297)
Q Consensus        84 ~aD~Vi~~v~e------------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g  140 (297)
                      +||+||.+...                  +..+.+++...+.+++ ++++++.-|....+  ..+.+....| .|++|
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG  145 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence            99999987531                  1123444555566665 45555544444333  2333333333 56665

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=2.3e-09  Score=80.48  Aligned_cols=119  Identities=23%  Similarity=0.350  Sum_probs=73.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCC-cEEecCcccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRR-LRCTSNLKDL   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~   82 (297)
                      +||+|||+|.+|.++|..++..|.  ++.++|+++++++.....+.+..               ....+ ...+.+++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~---------------~~~~~~~~~~~~~~~~   65 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT---------------PFTRRANIYAGDYADL   65 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---------------GGSCCCEEEECCGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc---------------cccccccccCCcHHHh
Confidence            589999999999999999988874  89999999987664322222210               01111 2345677889


Q ss_pred             CCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-H-HHhhhcCC-CCeEEE
Q 022434           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI-T-RLASATSR-PCQVIG  140 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~-~l~~~~~~-~~~~~g  140 (297)
                      ++||+||.+...              +..+.+++...+.++++. ++++.-|..... . .+.+.... +.|++|
T Consensus        66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~-aivivvtNPvd~~t~~~~k~sg~p~~rViG  139 (140)
T d1a5za1          66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD-SIVIVVTNPVDVLTYFFLKESGMDPRKVFG  139 (140)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSHHHHHHHHHHHHTCCTTTEEE
T ss_pred             cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHHCcCccceeC
Confidence            999999998621              123444555667777754 444433333322 2 23333222 356665

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.02  E-value=3.2e-09  Score=81.16  Aligned_cols=122  Identities=20%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+||+|||+|.+|.++|..++..|+  ++.++|++++.++.....+.+.        .     .......+....+++++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~--------~-----~~~~~~~~~~~~d~~~~   86 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG--------S-----LFLQTPKIVADKDYSVT   86 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT--------G-----GGCCCSEEEECSSGGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc--------c-----cccCCCeEEeccchhhc
Confidence            3699999999999999999999997  8999999988765432222211        0     00111233456778889


Q ss_pred             CCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCC-CeEEE
Q 022434           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIG  140 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g  140 (297)
                      ++||+||.+...              +..+.+++..+|.+..+ +++++.-|....+  ..+.+....| .|++|
T Consensus        87 ~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          87 ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             ccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            999999986521              22345555666777755 4444433433332  3333333333 55554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.02  E-value=5.6e-10  Score=88.99  Aligned_cols=80  Identities=19%  Similarity=0.266  Sum_probs=57.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |||+|||+|.+|.++|..|+ .||+|++||.++++++.+.+..    +..++.+.+..          ..++..+.+...
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~----------~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK----------QLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESCHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh----------hhhhhccchhhh
Confidence            58999999999999998776 6999999999999988764321    12223333222          233445555443


Q ss_pred             -cCCCcEEEEeccccH
Q 022434           82 -LHSADIIVEAIVESE   96 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~   96 (297)
                       ..++|+++.++|.+.
T Consensus        70 ~~~~~~ii~v~vpt~~   85 (196)
T d1dlja2          70 AYKEAELVIIATPTNY   85 (196)
T ss_dssp             HHHHCSEEEECCCCCE
T ss_pred             hhhccccccccCCccc
Confidence             789999999998754

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.02  E-value=1.8e-09  Score=81.25  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=70.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.+|.++|..|+..+. ++.++|++++..+.....+.+...            ......++..+.+++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~------------~~~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccc------------ccCCCCEEEecCcHHHhcC
Confidence            589999999999999999988886 899999998876554333222111            1112234566788999999


Q ss_pred             CcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           85 ADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        85 aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +|+||.+....              ..+.+++..+|.++++ +++++..|....
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvtNPvD  122 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLD  122 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECSSSHH
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeCCchH
Confidence            99999987321              1233455556777655 555554444333

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.89  E-value=2.9e-09  Score=80.10  Aligned_cols=120  Identities=14%  Similarity=0.232  Sum_probs=68.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCc-EEecCcccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL-RCTSNLKDL   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~~~~   82 (297)
                      +||+|||+|.+|..+|..++..|+  ++.++|+++++++.....        .++..       ...... ..+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D--------l~~~~-------~~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGL-------PFMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSC-------CCTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee--------eccCc-------ccCCCeeEeeCcHHHh
Confidence            589999999999999999999986  899999998765432111        11111       111222 234567789


Q ss_pred             CCCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCC-CCeEEEe
Q 022434           83 HSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        83 ~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      ++||+|+.+....              ..+.+++..++.++++ +++++.-|....+  ..+.+.... +.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p-~ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN-HGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCC-CceEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            9999999885221              2234445555777765 4444433333222  233333333 3567764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.89  E-value=9.7e-09  Score=77.76  Aligned_cols=124  Identities=19%  Similarity=0.246  Sum_probs=76.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ..||+|||+|.+|..+|..+...+. ++.++|+++++++.....+.+... +.           .....+..+.++++++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~-~~-----------~~~~~v~~~~~~~~~~   70 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNV-MA-----------YSNCKVSGSNTYDDLA   70 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHH-HH-----------TCCCCEEEECCGGGGT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhcc-cc-----------CCCcEEEecccccccC
Confidence            4699999999999999998888874 899999999877655444433211 10           1112334566788899


Q ss_pred             CCcEEEEeccc------------c-------HHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HH-HhhhcCC-CCeEEEe
Q 022434           84 SADIIVEAIVE------------S-------EDVKKKLFSELDKITKASAILASNTSSISI-TR-LASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~e------------~-------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~-l~~~~~~-~~~~~g~  141 (297)
                      ++|+||.+...            .       ..+.+++..++.+.++ +++++.-|....+ .. +.+.... +.|++|+
T Consensus        71 ~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          71 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            99999987631            1       1234455556777765 5555434443333 22 3333232 3567664

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.88  E-value=4.2e-09  Score=79.36  Aligned_cols=99  Identities=17%  Similarity=0.320  Sum_probs=61.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE--EecC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR--CTSN   78 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~--~~~~   78 (297)
                      +||+|||+ |.+|.++|..++..|.  ++.++|++++.  ++.....+.+.    .. ..       ....++.  .+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~----~~-~~-------~~~~~~~~~~~~d   68 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDA----LA-GT-------RSDANIYVESDEN   68 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHH----HT-TS-------CCCCEEEEEETTC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhc----cc-cc-------ccCCccccCCcch
Confidence            48999996 9999999999999994  99999998643  22222222211    00 00       0011222  2346


Q ss_pred             ccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           79 LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++++++||+||.+...              +..+.+++..++.++++ +.+++
T Consensus        69 ~~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv  120 (145)
T d1hyea1          69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV  120 (145)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred             HHHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE
Confidence            7789999999998521              12234455566777765 45443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=8.7e-09  Score=78.66  Aligned_cols=105  Identities=15%  Similarity=0.218  Sum_probs=67.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .||+|||+|.+|..+|..|+..|+  ++.++|+++++++.....+.+.       -..      .....+....++++++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~-------~~~------~~~~~~~~~~d~~~~~   86 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG-------SLF------LSTPKIVFGKDYNVSA   86 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT-------TTT------CSCCEEEEESSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc-------chh------cCCCeEEeccchhhhc
Confidence            589999999999999999999986  8999999988765433232211       000      0112334567888899


Q ss_pred             CCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +||+||.+...              +..+.+++...+.+..+ +.+++.-|....
T Consensus        87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~ivivvtNPvD  140 (159)
T d2ldxa1          87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIVVTNPVD  140 (159)
T ss_dssp             TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEECSSSHH
T ss_pred             cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEeCCcHH
Confidence            99999987632              12233344444666554 555554444333

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=1.1e-07  Score=73.49  Aligned_cols=76  Identities=22%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             CcEEEEECCChhHHHHHH--HHHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGSGQMGSGIAQ--LGVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~--~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|..|.+.+.  .++.    .+.+++++|+++++++.....+++....+   +         ..-++..++|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~i~~~td   69 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV---G---------ADLKFEKTMN   69 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT---T---------CCCEEEEESC
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc---C---------CCeEEEEeCC
Confidence            469999999999977543  2333    24699999999998876544444433221   1         1234566777


Q ss_pred             ccc-cCCCcEEEEec
Q 022434           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      .++ +++||+||.++
T Consensus        70 ~~eaL~dad~Vv~~~   84 (171)
T d1obba1          70 LDDVIIDADFVINTA   84 (171)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             hhhcccCCCeEeeec
Confidence            765 89999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=3.8e-08  Score=73.04  Aligned_cols=92  Identities=18%  Similarity=0.179  Sum_probs=60.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc---cc-
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL---KD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~-   81 (297)
                      +++.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+           .+.|..      .....   .++.   +. 
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~-----------~~~~~~------~~~gd---~~~~~~l~~a   60 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-----------ASYATH------AVIAN---ATEENELLSL   60 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHT-----------TTTCSE------EEECC---TTCTTHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHH-----------HHhCCc------ceeee---cccchhhhcc
Confidence            478999999999999999999999999999999988765           222220      00000   1111   11 


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                       +.+||.+|.+++++... ..+...+.+..+...+++.
T Consensus        61 ~i~~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          61 GIRNFEYVIVAIGANIQA-STLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             TGGGCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEEE
T ss_pred             CCccccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEee
Confidence             67899999999887642 2223334444444455553

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.61  E-value=3.2e-08  Score=77.90  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=39.7

Q ss_pred             cEEEEE-CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 022434            6 KVMGVV-GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS   49 (297)
Q Consensus         6 ~~I~vi-G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~   49 (297)
                      |||+|| |+|.||.+||..|+++||+|++|+|++++++.+.+.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            589999 78999999999999999999999999999887766554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.60  E-value=4e-07  Score=67.85  Aligned_cols=103  Identities=19%  Similarity=0.308  Sum_probs=62.4

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDGL--DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||+||| +|.+|..+|..+...|+  ++.++|++.  +.++.....+.+..    .   +      ....++ .+.+++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~----~---~------~~~~~i-~~~~~~   66 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI----A---Y------DSNTRV-RQGGYE   66 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH----T---T------TCCCEE-EECCGG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc----c---c------cCCceE-eeCCHH
Confidence            4899999 69999999999999986  799999753  22222111222110    0   0      001122 356788


Q ss_pred             ccCCCcEEEEecc-----c---------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           81 DLHSADIIVEAIV-----E---------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~~~~aD~Vi~~v~-----e---------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++++||+|+.+..     .         +..+.+++..+|.+.++ +++++.-|...
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~ivvtNPv  122 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSNPV  122 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCSSH
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEEecChH
Confidence            8999999998752     1         12344455556776664 45554344433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.51  E-value=1.4e-06  Score=64.21  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=61.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC---c---
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN---L---   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~---   79 (297)
                      |+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+.          .+.           . .+..|   .   
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------~~~-----------~-vi~Gd~~~~~~l   58 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDA-----------L-VINGDCTKIKTL   58 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSS-----------E-EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------hhh-----------h-hccCcccchhhh
Confidence            589999999999999999999999999999999988765221          121           0 12222   1   


Q ss_pred             c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           80 K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +  .++++|.++.+.+++..  ..+...+.+...+..+|+...
T Consensus        59 ~~~~i~~a~~vv~~t~~d~~--N~~~~~~~k~~~~~~iI~~~~   99 (132)
T d1lssa_          59 EDAGIEDADMYIAVTGKEEV--NLMSSLLAKSYGINKTIARIS   99 (132)
T ss_dssp             HHTTTTTCSEEEECCSCHHH--HHHHHHHHHHTTCCCEEEECS
T ss_pred             hhcChhhhhhhcccCCcHHH--HHHHHHHHHHcCCceEEEEec
Confidence            1  26789999988877643  223333334445556665433

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.50  E-value=1.2e-08  Score=79.78  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=76.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.+|..+|..+..-|.+|.+||+++..                  +.            ....+++++ ++
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~~------------~~~~~~l~ell~   91 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------GP------------WRFTNSLEEALR   91 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------SS------------SCCBSCSHHHHT
T ss_pred             CceEEEeccccccccceeeeeccccccccccccccc------------------cc------------eeeeechhhhhh
Confidence            368999999999999999999999999999987531                  10            123456776 89


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCC-CCeEEEeecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSR-PCQVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~-~~~~~g~h~~  144 (297)
                      .||+|+.++|-..+.+.-+-.+.-+.++++++++ |++.   +..+.+.+.+.. +....++..+
T Consensus        92 ~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailI-N~~RG~ivd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1          92 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFV-NVGRAEVLDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEE-ECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             ccchhhcccccccccccccccceeeeccccceEE-eccccccccchhhhhhcccCcEEEEEEecC
Confidence            9999999999876644333344556678888887 5543   334566666532 2334556644

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1.1e-06  Score=67.14  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=47.7

Q ss_pred             cEEEEECCChhHHHHHHHHH-H-C----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQMGSGIAQLGV-M-D----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~-~-~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|..|.+.+.... . .    +.+++++|+++++++...+...+    ....           ...+..+++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~----~~~~-----------~~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKR----LVKD-----------RFKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHH----HHTT-----------SSEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHh----hhcc-----------CceEEEecCc
Confidence            48999999999988886532 2 1    35899999999987644222111    1111           1223455554


Q ss_pred             c-ccCCCcEEEEecc
Q 022434           80 K-DLHSADIIVEAIV   93 (297)
Q Consensus        80 ~-~~~~aD~Vi~~v~   93 (297)
                      + ++++||+||.+..
T Consensus        66 ~~~l~~aDvVVita~   80 (162)
T d1up7a1          66 EGAVVDAKYVIFQFR   80 (162)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             ccccCCCCEEEEecc
Confidence            4 4999999998864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=2.1e-06  Score=65.75  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CCcEEEEECCChhHHHHHHH-HHH--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            4 KMKVMGVVGSGQMGSGIAQL-GVM--D---GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~-l~~--~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +..||+|||+|..|.+.+.. +..  .   +-+++++|+++++++...+.+++....   .+         ...++..++
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~   69 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE---KA---------PDIEFAATT   69 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH---HC---------TTSEEEEES
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHH---hC---------CCcceEecC
Confidence            34689999999998775432 332  2   238999999999877544443332211   11         123455677


Q ss_pred             Cccc-cCCCcEEEEecc
Q 022434           78 NLKD-LHSADIIVEAIV   93 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~   93 (297)
                      |..+ +++||+||.+.-
T Consensus        70 d~~eal~~AD~Vvitag   86 (167)
T d1u8xx1          70 DPEEAFTDVDFVMAHIR   86 (167)
T ss_dssp             CHHHHHSSCSEEEECCC
T ss_pred             ChhhccCCCCEEEECCC
Confidence            7655 899999999873

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.41  E-value=1.6e-07  Score=72.72  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=37.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|||+|.||..+|..|++.||+|+++||+.++++.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   41 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence            4799999999999999999999999999999999988765

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.39  E-value=4.9e-07  Score=67.66  Aligned_cols=101  Identities=16%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCC-C-cEEecC-c
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPR-R-LRCTSN-L   79 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~-i~~~~~-~   79 (297)
                      .||+|||+ |.+|..+|..|+..|.  +++++|.++.+.+..        +  .++..       .... + ....++ +
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--------D--l~~~~-------~~~~~~~~~~~~~~~   63 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--------D--LSHIE-------TRATVKGYLGPEQLP   63 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--------H--HTTSS-------SSCEEEEEESGGGHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--------H--Hhhhh-------hhcCCCeEEcCCChH
Confidence            38999996 9999999999999986  799999987543321        1  11111       1111 1 111233 3


Q ss_pred             cccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           80 KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++++||+||.+..-              +..+.+++..++.++.+ +++++.-|....
T Consensus        64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvD  121 (144)
T d1mlda1          64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPVN  121 (144)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHH
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchh
Confidence            458999999987531              22345566667777754 555554444443

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.39  E-value=2.4e-06  Score=65.64  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             cEEEEECCChhHHH--HHHHHHHC----CCcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            6 KVMGVVGSGQMGSG--IAQLGVMD----GLDVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~I~viG~G~mG~~--iA~~l~~~----G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +||+|||+|..|.+  ++..+...    +-+++++|+++++  ++.......+.+   .+.+         ..-++..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~---~~~~---------~~~~~~~~t   69 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMV---EKAG---------VPIEIHLTL   69 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHH---HHTT---------CCCEEEEES
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHH---HhcC---------CCceeeecC
Confidence            58999999987754  34444432    2389999998864  222211111111   1112         123345566


Q ss_pred             Ccc-ccCCCcEEEEecc
Q 022434           78 NLK-DLHSADIIVEAIV   93 (297)
Q Consensus        78 ~~~-~~~~aD~Vi~~v~   93 (297)
                      |.. ++++||+||.+..
T Consensus        70 d~~~al~gaDvVv~ta~   86 (169)
T d1s6ya1          70 DRRRALDGADFVTTQFR   86 (169)
T ss_dssp             CHHHHHTTCSEEEECCC
T ss_pred             CchhhcCCCCEEEEccc
Confidence            654 4899999999884

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.36  E-value=1.5e-07  Score=74.38  Aligned_cols=112  Identities=21%  Similarity=0.204  Sum_probs=75.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||.|.+|+.+|..+..-|.+|..||+.......             ..+              ....++++ ++.
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~~--------------~~~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KKG--------------YYVDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT--------------CBCSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cce--------------eeeccccccccc
Confidence            68999999999999999999999999999987543221             111              12345665 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-++.-+.++++++++ |++.-   ....+.+.+... ..-.++..|.
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~~~i~~a~lDV~~  160 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE  160 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence            999999999766543333334445678888887 66543   335666655332 2334555554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.35  E-value=2.5e-07  Score=72.70  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=78.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.+|+.+|..+..-|.+|..||+........           ...+.             ....++++ ++
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-----------~~~~~-------------~~~~~l~~ll~  102 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDE-----------ASYQA-------------TFHDSLDSLLS  102 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-----------HHHTC-------------EECSSHHHHHH
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchh-----------hcccc-------------cccCCHHHHHh
Confidence            3789999999999999999999999999999865432221           11111             34456666 88


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|-..+.+.-+-++.-+.++++++++ |++.-.   -+.+.+.+... ....++..|.
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~~  167 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVFA  167 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECCC
Confidence            9999999999876544333344556788898887 666433   35666666432 2335556544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.34  E-value=1e-07  Score=75.11  Aligned_cols=114  Identities=22%  Similarity=0.237  Sum_probs=76.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.+|..+|..+..-|.+|..||+....-...            ..+             +...+++++ ++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~~~-------------~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------ALG-------------LQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------HHT-------------CEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------hhc-------------cccccchhhcccc
Confidence            689999999999999999999999999999865421111            111             134567777 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-.+.-+.++++++++ |++.-   ..+.+.+.+... ....++..+.
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~~~i~~a~lDV~~  168 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-NTARGGLVDEKALAQALKEGRIRGAALDVHE  168 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEE-ecCCceEEcHHHHHHHHHcCCceEEEEEcCC
Confidence            999999998765533333334445678888887 66543   335666666432 2234555443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.32  E-value=3.8e-07  Score=71.57  Aligned_cols=116  Identities=14%  Similarity=0.062  Sum_probs=78.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||+|.+|..+|..+..-|.+|..||+........           .+.+             +....++++ ++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-----------~~~~-------------~~~~~~l~~~l~   99 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-----------KELN-------------LTWHATREDMYP   99 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-----------HHHT-------------CEECSSHHHHGG
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeecccccccc-----------cccc-------------ccccCCHHHHHH
Confidence            4689999999999999999999999999999864322111           1111             134566666 89


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCCC-eEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRPC-QVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~~-~~~g~h~~~  145 (297)
                      .||+|+.++|-..+.+.-+-++.-+.++++++++ |++.-   ..+.+.+.+.... .-.++..|.
T Consensus       100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~  164 (188)
T d2naca1         100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALESGRLAGYAGDVWF  164 (188)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred             hccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHhCCCceeEEEeCCC
Confidence            9999999999776544333344556778888887 66543   3356777664432 234555543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=9.1e-07  Score=66.93  Aligned_cols=98  Identities=24%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -++|+|+|.|..|+++|..+...|.+|+++|++|-+.-++           .-.|.             .+....+.+..
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A-----------~~dG~-------------~v~~~~~a~~~   79 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA-----------AMEGY-------------EVTTMDEACQE   79 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EECCHHHHTTT
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh-----------hcCce-------------Eeeehhhhhhh
Confidence            4789999999999999999999999999999999653322           22332             33333334889


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC---CCcHHHHhh
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS---SISITRLAS  130 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts---~~~~~~l~~  130 (297)
                      +|++|.+....-.+..+-|    +.+++++|++..++   -+.+..+.+
T Consensus        80 adivvtaTGn~~vI~~eh~----~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          80 GNIFVTTTGCIDIILGRHF----EQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             CSEEEECSSCSCSBCHHHH----TTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             ccEEEecCCCccchhHHHH----HhccCCeEEEEeccccceecHHHHhh
Confidence            9999998765333333333    35788898884332   234455554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.1e-06  Score=65.70  Aligned_cols=104  Identities=17%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             cEEEEEC-CChhHHHHHHHHHH-C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVM-D--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~-~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+||| +|.+|..+|..|+. .  +.++.++|..+. .+.....        .++....     .....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~D--------l~h~~~~-----~~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVD--------LSHIPTA-----VKIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHH--------HHTSCSS-----CEEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHH--------HHCCccc-----cCCcEEEcCCCccc
Confidence            5899999 59999999998754 3  469999998753 2211111        1121100     00011112445667


Q ss_pred             cCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 LHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++|+||.+..-              +..+.+++..+|.++++.. +++.-|....
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~a-ivivvtNPvD  122 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKA-CIGIITNPVN  122 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTS-EEEECSSSHH
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCc-EEEEccCCch
Confidence            8999999987621              2234555666787877554 4443444333

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=1.1e-06  Score=68.65  Aligned_cols=115  Identities=25%  Similarity=0.252  Sum_probs=78.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.+|..+|..+..-|.+|..||+........            ..+.             . ..++++ ++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~------------~~~~-------------~-~~~l~ell~   97 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA------------QLGI-------------E-LLSLDDLLA   97 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH------------HHTC-------------E-ECCHHHHHH
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh------------hcCc-------------e-eccHHHHHh
Confidence            4689999999999999999999999999999876543221            1111             2 345565 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~p  146 (297)
                      .||+|+.++|-..+.+.-+-++.-+.++++++++ |++.   +.-+.+.+.+... -...++..|.+
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI-N~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~  163 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIV-NAARGGLVDEAALADAITGGHVRAAGLDVFAT  163 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHHTSSEEEEEESSCSS
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-EecchhhhhhHHHHHHHhcCcEeEEEEeCCCC
Confidence            9999999999776644333344556778888887 6654   3346777766443 23455665543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.20  E-value=6.8e-07  Score=68.09  Aligned_cols=81  Identities=23%  Similarity=0.295  Sum_probs=55.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (297)
                      .++|.|||+|.||..++..|...|. ++++++|+.++++.+.+.          .|.           .....++.. .+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~----------~~~-----------~~~~~~~~~~~l   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARD----------LGG-----------EAVRFDELVDHL   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHH----------HTC-----------EECCGGGHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHh----------hhc-----------ccccchhHHHHh
Confidence            4789999999999999999999998 699999999887665321          121           001112333 36


Q ss_pred             CCCcEEEEeccccHH-HHHHHHHHH
Q 022434           83 HSADIIVEAIVESED-VKKKLFSEL  106 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~-~k~~~~~~l  106 (297)
                      .++|+||.|++.+.. +..+.++..
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~  107 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREA  107 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHH
T ss_pred             ccCCEEEEecCCCCccccHhhhHHH
Confidence            789999999865432 234455443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.2e-06  Score=68.71  Aligned_cols=112  Identities=21%  Similarity=0.293  Sum_probs=75.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|||.|.+|..+|..+..-|.+|..||+......                            .......++++ ++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            46899999999999999999999999999998643110                            11123456666 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCC-CCeEEEeecCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      .||+|+.++|-..+.+.-+-++.-+.++++++++ |++.-   ..+.+.+.+.. .....++..+.
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~lvde~aL~~aL~~~~~~~a~lDV~~  160 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALASKHLAGAAIDVFP  160 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHHTTSEEEEEEEC--
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEE-EcCcHHhhhhHHHHHHHHcCCceEEEEecCC
Confidence            9999999998776544333344556678888887 55533   34677776643 23345555443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.16  E-value=7.3e-07  Score=70.53  Aligned_cols=110  Identities=20%  Similarity=0.195  Sum_probs=74.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||.|.+|+.+|..+..-|.+|..||+.+....                           ...+. ..++++ ++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---------------------------~~~~~-~~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---------------------------HPDFD-YVSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---------------------------CTTCE-ECCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhh---------------------------hcchh-HHHHHHHHHh
Confidence            6899999999999999999999999999998753110                           01112 235565 789


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      ||+|+.++|-..+.+.-+-++.-+.++++++++ |++.-   ..+.+.+.+... ....++..+
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~vvde~aL~~aL~~g~i~ga~lDV~  160 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLKSGKLAGVGIDTY  160 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHHTTSEEEEEESSC
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEE-ecccHhhhhhHHHHHHHhcCCcceEecccc
Confidence            999999998776643333344445678888877 66543   335676666432 223444444

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.14  E-value=1e-05  Score=60.97  Aligned_cols=102  Identities=17%  Similarity=0.064  Sum_probs=60.9

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      +.+||+|||+ |.+|..+|..|+..+.       ++.++|.++.....-  .    ++.-......      .....+..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~--~----l~~~~~~~~~------~~~~~~~~   69 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLD--G----VLMELQDCAL------PLLKDVIA   69 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHH--H----HHHHHHHTCC------TTEEEEEE
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhh--h----hhhhhccccc------cccccccc
Confidence            3469999996 9999999999987542       577888765432211  0    0000111111      01122344


Q ss_pred             ecCc-cccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           76 TSNL-KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        76 ~~~~-~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      .++. ++++++|+||.+..-              +..+.+++..++.++++.+.+++
T Consensus        70 ~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~ii  126 (154)
T d5mdha1          70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI  126 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             CcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEE
Confidence            4444 459999999987621              12345566667888888777443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.14  E-value=4.5e-06  Score=63.16  Aligned_cols=88  Identities=22%  Similarity=0.248  Sum_probs=67.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|+|||.|..|.+-|.+|..+|++|++=-|..++ .+++           .+.|.             .+.+-.++++
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A-----------~~~Gf-------------~v~~~~eA~~   71 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHGL-------------KVADVKTAVA   71 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTTC-------------EEECHHHHHH
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHH-----------hhhcc-------------ccccHHHHhh
Confidence            378999999999999999999999999988776542 2333           44453             3444445589


Q ss_pred             CCcEEEEeccccHHHHHHHHH-HHHhhcCCCeEEEe
Q 022434           84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s  118 (297)
                      .+|+|...+|+..  ..++++ +|.+.++++..+..
T Consensus        72 ~aDiim~L~PD~~--q~~vy~~~I~p~lk~g~~L~F  105 (182)
T d1np3a2          72 AADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAF  105 (182)
T ss_dssp             TCSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEE
T ss_pred             hcCeeeeecchHH--HHHHHHHhhhhhcCCCcEEEE
Confidence            9999999999655  456775 69999999887764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.06  E-value=4.4e-06  Score=62.77  Aligned_cols=90  Identities=20%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      -+++.|+|.|..|+++|..+...|.+|+++++||-+.-++           .-.|             .++.+-.+.++.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA-----------~mdG-------------f~v~~~~~a~~~   78 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-----------VMEG-------------FNVVTLDEIVDK   78 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-----------HTTT-------------CEECCHHHHTTT
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH-----------HhcC-------------CccCchhHcccc
Confidence            4789999999999999999999999999999999543222           1223             244443445899


Q ss_pred             CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +|++|.+....-.+..+-|    ..+++++|++ |....
T Consensus        79 aDi~vTaTGn~~vI~~~h~----~~MKdgaIl~-N~GHf  112 (163)
T d1v8ba1          79 GDFFITCTGNVDVIKLEHL----LKMKNNAVVG-NIGHF  112 (163)
T ss_dssp             CSEEEECCSSSSSBCHHHH----TTCCTTCEEE-ECSST
T ss_pred             CcEEEEcCCCCccccHHHH----HHhhCCeEEE-ecccc
Confidence            9999999876443333333    3578889887 54444

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=0.00013  Score=56.12  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|+++|+++++++.+
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a   69 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA   69 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccccccccc
Confidence            3689999999999999999999997 799999999988776

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=1.9e-05  Score=54.34  Aligned_cols=71  Identities=18%  Similarity=0.321  Sum_probs=49.5

Q ss_pred             CCCCCcEEEEECCChhH-HHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            1 MEEKMKVMGVVGSGQMG-SGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG-~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+...++|-|||.|-.| +++|..|.+.||+|+.+|.......          +.+.+.|..           +....+.
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~----------~~L~~~Gi~-----------v~~g~~~   62 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVT----------QRLAQAGAK-----------IYIGHAE   62 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHH----------HHHHHTTCE-----------EEESCCG
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhh----------hHHHHCCCe-----------EEECCcc
Confidence            35668999999999999 6779999999999999998754221          122455541           1222333


Q ss_pred             cccCCCcEEEEec
Q 022434           80 KDLHSADIIVEAI   92 (297)
Q Consensus        80 ~~~~~aD~Vi~~v   92 (297)
                      +.+.++|+||.+-
T Consensus        63 ~~i~~~d~vV~S~   75 (96)
T d1p3da1          63 EHIEGASVVVVSS   75 (96)
T ss_dssp             GGGTTCSEEEECT
T ss_pred             ccCCCCCEEEECC
Confidence            3478889888753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.92  E-value=5e-06  Score=67.51  Aligned_cols=38  Identities=29%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ||.+.+||.|||+|.+|.+.|..|+++|++|+++|++.
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            66777899999999999999999999999999999863

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=1.3e-05  Score=60.37  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCc
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL   73 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i   73 (297)
                      +.+||+|||+ |.+|..+|..|+..++       ...+++.+.  ++++.....        ......      .....+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~------~~~~~~   68 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME--------LEDCAF------PLLAGL   68 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHTTTC------TTEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh--------hhcccc------cccccc
Confidence            3469999997 9999999999998763       234444433  333222110        111110      011223


Q ss_pred             EEecC-ccccCCCcEEEEecc--c------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           74 RCTSN-LKDLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        74 ~~~~~-~~~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ...++ .++++++|+||.+..  .            +..+.+++..++.++++++++++.-|..+.
T Consensus        69 ~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          69 EATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            33443 455999999998762  1            123444555668888887876654444333

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.90  E-value=1.7e-05  Score=62.10  Aligned_cols=93  Identities=17%  Similarity=0.157  Sum_probs=63.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC------CcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG------LDVWLVDTDP-DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G------~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +++|+|||.|..|.+-|.+|..+|      .+|++-=|.. ...+++           .+.|...        ....+.+
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA-----------~~dGf~v--------~~~~v~~  104 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEA-----------RAAGFSE--------ENGTLGD  104 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCG--------GGTCEEE
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHH-----------HHcCCcc--------CCCcccC
Confidence            479999999999999999999965      4566553332 223333           4445310        0111333


Q ss_pred             CccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           78 NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      -.++++.+|+|+..+|+..+  .+++++|.+.++++..+..
T Consensus       105 v~EAv~~ADiVmiLlPDe~Q--~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         105 MWETISGSDLVLLLISDSAQ--ADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHHHHHTCSEEEECSCHHHH--HHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHhhCCEEEEecchHHH--HHHHHHHHHhcCCCceeee
Confidence            33458899999999997664  4678899999999887764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.88  E-value=0.00011  Score=56.23  Aligned_cols=108  Identities=6%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT   76 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      ..||+|+|+ |.+|.+++..|+....       ++.++|.++..-. + +.+...    ......      .....+..+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~-l-~g~~md----l~d~a~------~~~~~~~~~   91 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA-L-EGVAME----LEDSLY------PLLREVSIG   91 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH-H-HHHHHH----HHTTTC------TTEEEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch-h-cchhhh----hccccc------ccccCcccc
Confidence            458999997 9999999999998542       5777787764321 1 111000    111111      112333445


Q ss_pred             cC-ccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           77 SN-LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        77 ~~-~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++ .++++++|+||.+..-              +..+.+++...+.++++++++|+..+..+.
T Consensus        92 ~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          92 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence            55 4559999999987621              223455566668888888886554444333

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=2.5e-05  Score=59.60  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=36.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.++++++..|.+.|. +|++++|++++.+.+
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            4689999999999999999999997 799999999987765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=2.6e-05  Score=59.72  Aligned_cols=41  Identities=10%  Similarity=0.024  Sum_probs=37.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      -++|.|+|+|-.+++++..|.+.|.+|++++|+.++.+.+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            47899999999999999999999999999999999887653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.9e-06  Score=65.80  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=34.8

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .++||.|+|+ |..|+.++..|+++||+|+++.|+++++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            4689999996 9999999999999999999999998764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=2.2e-05  Score=60.20  Aligned_cols=73  Identities=11%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccccC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~   83 (297)
                      -++|.|+|+|.++++++..|.+.+-+|++++|+.++++...+.+.       ..+            .+.. ..+.....
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~   78 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQ   78 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhcccccc
Confidence            468999999999999999999988999999999988777644321       111            1122 22222367


Q ss_pred             CCcEEEEeccccH
Q 022434           84 SADIIVEAIVESE   96 (297)
Q Consensus        84 ~aD~Vi~~v~e~~   96 (297)
                      ++|+||-|+|-..
T Consensus        79 ~~diiIN~tp~g~   91 (171)
T d1p77a1          79 TYDLVINATSAGL   91 (171)
T ss_dssp             CCSEEEECCCC--
T ss_pred             ccceeeecccccc
Confidence            8999999998653

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=5.8e-05  Score=54.76  Aligned_cols=78  Identities=24%  Similarity=0.324  Sum_probs=51.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|+|+ |.||+.++..+.+.|+++..- |.+.                                        .+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------------------------------~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------------------------------VEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------------------------------EEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------------------------------HHHhc
Confidence            48999996 999999999999999987643 3221                                        12356


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHH
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL  128 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l  128 (297)
                      ++|+||+....+..  .+.++.   ..+.+..+++.|++++.+++
T Consensus        41 ~~DVvIDFS~p~~~--~~~l~~---~~~~~~p~ViGTTG~~~~~~   80 (128)
T d1vm6a3          41 SPDVVIDFSSPEAL--PKTVDL---CKKYRAGLVLGTTALKEEHL   80 (128)
T ss_dssp             CCSEEEECSCGGGH--HHHHHH---HHHHTCEEEECCCSCCHHHH
T ss_pred             cCCEEEEecCHHHH--HHHHHH---HHhcCCCEEEEcCCCCHHHH
Confidence            78999997654332  223332   22334556667888876543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00038  Score=52.85  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=36.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|+++|+++++++.+
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a   67 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA   67 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH
Confidence            4689999999999999999999998 799999999998876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.76  E-value=1.1e-05  Score=57.86  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|.-+|..|+..|.+|+++++.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            57999999999999999999999999999998654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.76  E-value=1.9e-05  Score=56.95  Aligned_cols=57  Identities=23%  Similarity=0.378  Sum_probs=41.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHH-HHHHHHHHHHH-HHHHcCC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALV-RATKSISSSIQ-KFVSKGQ   60 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~~~~~-~~~~~g~   60 (297)
                      +.++|.|||+|..|.-+|..|++.|++|+++++++.-+. ..-+.+.+.+. .+.++|.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV   87 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGV   87 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTC
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCc
Confidence            357999999999999999999999999999999876543 22233333333 3344553

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=8.8e-05  Score=50.02  Aligned_cols=66  Identities=15%  Similarity=0.229  Sum_probs=47.6

Q ss_pred             cEEEEECCChhHH-HHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434            6 KVMGVVGSGQMGS-GIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~I~viG~G~mG~-~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||-|||.|-+|. ++|..|.+.|++|...|+.+...-          +++.+.|.-           +....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t----------~~L~~~Gi~-----------i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERT----------AYLRKLGIP-----------IFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHH----------HHHHHTTCC-----------EESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhH----------HHHHHCCCe-----------EEeeecccccCC
Confidence            5899999999997 789999999999999998864321          123566641           122234445788


Q ss_pred             CcEEEEec
Q 022434           85 ADIIVEAI   92 (297)
Q Consensus        85 aD~Vi~~v   92 (297)
                      +|+||.+-
T Consensus        61 ~d~vV~Ss   68 (89)
T d1j6ua1          61 PDLVIKTP   68 (89)
T ss_dssp             CSEEEECT
T ss_pred             CCEEEEec
Confidence            99998763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.69  E-value=0.00049  Score=52.05  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=37.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|+++|+++++++.+
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a   66 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA   66 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHH
Confidence            4689999999999999999999999999999999998876

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=2.4e-05  Score=55.92  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=32.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .++|.|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            478999999999999999999999999999987643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=0.00028  Score=49.80  Aligned_cols=79  Identities=15%  Similarity=0.135  Sum_probs=53.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe---cCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT---SNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~   80 (297)
                      +-++|.|||+|..|..-|..|++.|.+|++++.....-..          .+.+.+.            ++..   -+.+
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~------------i~~~~~~~~~~   68 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGM------------LTLVEGPFDET   68 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTS------------CEEEESSCCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCC------------ceeeccCCCHH
Confidence            3479999999999999999999999999999876542111          1123332            2222   2234


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHH
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSE  105 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~  105 (297)
                      ++.++++|+.+.. +.++...+.+.
T Consensus        69 dl~~~~lv~~at~-d~~~n~~i~~~   92 (113)
T d1pjqa1          69 LLDSCWLAIAATD-DDTVNQRVSDA   92 (113)
T ss_dssp             GGTTCSEEEECCS-CHHHHHHHHHH
T ss_pred             HhCCCcEEeecCC-CHHHHHHHHHH
Confidence            5889999998865 44444455443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.61  E-value=0.00038  Score=53.49  Aligned_cols=74  Identities=11%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||||||+|.||...+..+... +++|+ ++|+++++++.+.+          +.+.         .....+.+|+++ +
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----------~~~~---------~~~~~~~~~~~~ll   62 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY---------PESTKIHGSYESLL   62 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC---------CTTCEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----------cccc---------ccceeecCcHHHhh
Confidence            4899999999999999888775 56777 67999987765421          1121         112245677766 3


Q ss_pred             --CCCcEEEEeccccHHH
Q 022434           83 --HSADIIVEAIVESEDV   98 (297)
Q Consensus        83 --~~aD~Vi~~v~e~~~~   98 (297)
                        .+.|+|+.+.|.....
T Consensus        63 ~~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1          63 EDPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             HCTTCCEEEECCCGGGHH
T ss_pred             hccccceeeecccchhhc
Confidence              4689999999987653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.60  E-value=6.1e-05  Score=57.91  Aligned_cols=76  Identities=20%  Similarity=0.245  Sum_probs=53.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|.|+|+|.++++++..|.+.| +|++++|+.++.+.+.+.+...+....             ...+.. .+++. ..
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~   82 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-------------GEEVKF-SGLDVDLD   82 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-------------HHHEEE-ECTTCCCT
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh-------------hhhhhh-hhhhhccc
Confidence            468999999999999999998877 999999999998887665543321000             000122 33333 67


Q ss_pred             CCcEEEEecccc
Q 022434           84 SADIIVEAIVES   95 (297)
Q Consensus        84 ~aD~Vi~~v~e~   95 (297)
                      .+|++|.|.|-.
T Consensus        83 ~~dliIn~tp~g   94 (177)
T d1nvta1          83 GVDIIINATPIG   94 (177)
T ss_dssp             TCCEEEECSCTT
T ss_pred             hhhhhccCCccc
Confidence            788999888743

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.59  E-value=0.00038  Score=52.66  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=48.8

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~-iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.||.. ....+.+. +.+++++|+++++.+.+.+.          .+.            ....+|+++ +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YRV------------SATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TTC------------CCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------ccc------------ccccccHHHhc
Confidence            58999999999976 45556554 56888999999887765221          111            023455555 3


Q ss_pred             -CCCcEEEEeccccHHH
Q 022434           83 -HSADIIVEAIVESEDV   98 (297)
Q Consensus        83 -~~aD~Vi~~v~e~~~~   98 (297)
                       .+.|+|+.|+|.....
T Consensus        60 ~~~iD~V~I~tp~~~H~   76 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVHS   76 (167)
T ss_dssp             GGCCSEEEECSCGGGHH
T ss_pred             ccccceecccccccccc
Confidence             3679999999987653

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00015  Score=54.73  Aligned_cols=104  Identities=13%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ...||+|+|+ |.||+.++..+.+. +++++ .+|+.....-.            .+.|.+.    ......+...++++
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~----~~~~~~~~~~~~~~   66 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELA----GAGKTGVTVQSSLD   66 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSS----SSSCCSCCEESCST
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhh----ccccCCceeeccHH
Confidence            4568999996 99999999987775 56654 55654321000            0011110    01112345667777


Q ss_pred             c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHH
Q 022434           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL  128 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l  128 (297)
                      . ...+|+||+....+.     ....++.....+.-+++.|++++.+++
T Consensus        67 ~~~~~~DViIDFs~p~~-----~~~~~~~a~~~~~~~ViGTTG~~~~~~  110 (162)
T d1diha1          67 AVKDDFDVFIDFTRPEG-----TLNHLAFCRQHGKGMVIGTTGFDEAGK  110 (162)
T ss_dssp             TTTTSCSEEEECSCHHH-----HHHHHHHHHHTTCEEEECCCCCCHHHH
T ss_pred             HHhcccceEEEeccHHH-----HHHHHHHHHhccceeEEecCCCcHHHH
Confidence            6 678999999764322     223333334445666667888876543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.57  E-value=0.00017  Score=56.45  Aligned_cols=40  Identities=28%  Similarity=0.413  Sum_probs=36.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|+|-|.|++|..+|..|.+.|..|+++|.+++.++..
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            3789999999999999999999999999999999877654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.55  E-value=0.0005  Score=51.84  Aligned_cols=41  Identities=27%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +-.+|.|+|+|.+|...++.+...|.+|+++|+++++++.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a   67 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA   67 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence            34689999999999999999999999999999999988766

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.0002  Score=54.05  Aligned_cols=69  Identities=13%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||.. ....+... +++++ ++|+++++.+.+.+.          .+.             ...++.++ 
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~----------~~~-------------~~~~~~~~l   58 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WRI-------------PYADSLSSL   58 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HTC-------------CBCSSHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhc----------ccc-------------cccccchhh
Confidence            48999999999986 45555544 66755 789998876655221          121             24455555 


Q ss_pred             cCCCcEEEEeccccHH
Q 022434           82 LHSADIIVEAIVESED   97 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~   97 (297)
                      +++.|+|+.|+|.+..
T Consensus        59 ~~~~D~V~I~tp~~~h   74 (164)
T d1tlta1          59 AASCDAVFVHSSTASH   74 (164)
T ss_dssp             HTTCSEEEECSCTTHH
T ss_pred             hhhcccccccccchhc
Confidence            6789999999998765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=0.00071  Score=51.13  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=36.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +-.+|.|+|+|.+|...++.+...|.+|+++|+++++++.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a   67 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA   67 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHh
Confidence            34689999999999998888888899999999999988776

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=3.8e-05  Score=52.48  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=32.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -++|.|+|+|..|.++|..|.+.|++|+++|.+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            46899999999999999999999999999997643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=4.7e-05  Score=54.82  Aligned_cols=37  Identities=22%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .+++.|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            4799999999999999999999999999999876433

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=6.7e-05  Score=57.75  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=33.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..++|+|||+|.-|..-|..|+++||+|+++|+++.
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            357999999999999999999999999999998753

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00024  Score=54.69  Aligned_cols=42  Identities=24%  Similarity=0.436  Sum_probs=36.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~   46 (297)
                      -++|.|+|+|.+|++++..|.+.|. ++++++|++++.+++..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            3689999999999999999999997 79999999887776644

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=6.2e-05  Score=53.66  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=33.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .++|.|||+|..|.-+|..|++.|.+|+++++.+.-
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            479999999999999999999999999999987653

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00017  Score=53.44  Aligned_cols=96  Identities=20%  Similarity=0.236  Sum_probs=54.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMD-GL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+||||||+ |.+|.-+...|+.+ .|   +++.+..+...                  |.....  ...........+.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------------------g~~~~~--~~~~~~~~~~~~~   60 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------------------QAAPSF--GGTTGTLQDAFDL   60 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------------------SBCCGG--GTCCCBCEETTCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------------------cccccc--cCCceeeecccch
Confidence            358999999 99999999876654 34   45556544321                  110000  0000111122233


Q ss_pred             cccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++++++|++|.|+|.+..  +++..++.+ ...++++++++|..
T Consensus        61 ~~~~~~DivF~a~~~~~s--~~~~~~~~~-~g~~~~VID~Ss~f  101 (146)
T d1t4ba1          61 EALKALDIIVTCQGGDYT--NEIYPKLRE-SGWQGYWIDAASSL  101 (146)
T ss_dssp             HHHHTCSEEEECSCHHHH--HHHHHHHHH-TTCCCEEEECSSTT
T ss_pred             hhhhcCcEEEEecCchHH--HHhhHHHHh-cCCCeecccCCccc
Confidence            347899999999987653  334433333 23346777788753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.34  E-value=0.00014  Score=54.79  Aligned_cols=92  Identities=16%  Similarity=0.273  Sum_probs=60.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ec---Cccc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TS---NLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~---~~~~   81 (297)
                      -+|.|||+|..|..-+......|.+|+++|.++++++.+.....        .             ++.. ..   .+++
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~--------~-------------~~~~~~~~~~~l~~   91 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG--------S-------------RVELLYSNSAEIET   91 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------G-------------GSEEEECCHHHHHH
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc--------c-------------cceeehhhhhhHHH
Confidence            58999999999999999999999999999999998876532211        0             0111 11   1233


Q ss_pred             -cCCCcEEEEecc--ccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           82 -LHSADIIVEAIV--ESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 -~~~aD~Vi~~v~--e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +++||+||-++-  ....- .-+-++.-+.++++++|+..
T Consensus        92 ~~~~aDivI~aalipG~~aP-~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1          92 AVAEADLLIGAVLVPGRRAP-ILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             HHHTCSEEEECCCCTTSSCC-CCBCHHHHTTSCTTCEEEET
T ss_pred             hhccCcEEEEeeecCCcccC-eeecHHHHhhcCCCcEEEEe
Confidence             789999999873  21110 01122333457778777643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.33  E-value=8e-05  Score=60.38  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=33.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +.+||.|||+|.-|...|..|+++|++|+++|++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999998654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.31  E-value=0.00084  Score=50.19  Aligned_cols=95  Identities=20%  Similarity=0.298  Sum_probs=55.5

Q ss_pred             CCCCCcEEEEECCChhHHHH-HHHHHHC-CCcEE-EEeCCHHHH--HHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434            1 MEEKMKVMGVVGSGQMGSGI-AQLGVMD-GLDVW-LVDTDPDAL--VRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC   75 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~i-A~~l~~~-G~~V~-~~d~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      |.++ .||||||+|.+|..+ ...+... ..+++ +.+++++..  +.+           .+.|..            ..
T Consensus         1 M~kk-irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a-----------~~~~i~------------~~   56 (157)
T d1nvmb1           1 MNQK-LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA-----------QRMGVT------------TT   56 (157)
T ss_dssp             CCSC-EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH-----------HHTTCC------------EE
T ss_pred             CCCC-cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh-----------hhcCCc------------cc
Confidence            6544 689999999999864 4555444 34555 458876522  222           222321            11


Q ss_pred             ecCcc------ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434           76 TSNLK------DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        76 ~~~~~------~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      ..+++      +..+.|+|+.++|...+..+...   ....+.++.++.+|+.
T Consensus        57 ~~~~d~l~~~~~~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          57 YAGVEGLIKLPEFADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             SSHHHHHHHSGGGGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred             ccceeeeeecccccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence            11111      24578999999997666544332   2234567777778873

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.30  E-value=7.9e-05  Score=57.99  Aligned_cols=45  Identities=27%  Similarity=0.248  Sum_probs=39.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS   49 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~   49 (297)
                      -++|.|.|+ |.+|..+|..|++.|.+|++.+|++++++...+.+.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            468888885 999999999999999999999999998887765543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.26  E-value=0.0022  Score=48.61  Aligned_cols=40  Identities=23%  Similarity=0.175  Sum_probs=35.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a   68 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA   68 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHH
Confidence            3689999999999999999998986 688999999998877

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.0016  Score=49.69  Aligned_cols=70  Identities=11%  Similarity=0.073  Sum_probs=47.7

Q ss_pred             cEEEEECCChhHHH-HHHHHHHCC--CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGSGQMGSG-IAQLGVMDG--LDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~-iA~~l~~~G--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||+|||+|.+|.. .+..+.+.+  ++|+ ++|+++++++.+.+.          .+.            ....+++++
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------~~~------------~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------VGN------------PAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------HSS------------CEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------ccc------------cceeeeeec
Confidence            58999999999987 466666543  4655 789999877654221          121            134567766


Q ss_pred             -c--CCCcEEEEeccccHH
Q 022434           82 -L--HSADIIVEAIVESED   97 (297)
Q Consensus        82 -~--~~aD~Vi~~v~e~~~   97 (297)
                       +  .+.|+|+.|+|.+..
T Consensus        62 ll~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGH
T ss_pred             cccccccceeecccccccc
Confidence             3  357899999987764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00091  Score=49.63  Aligned_cols=95  Identities=9%  Similarity=0.080  Sum_probs=59.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC------c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN------L   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~   79 (297)
                      .+|-|+|.|.+|..++..|.+.|++|+++|.+++......+.       +...|..            ....|      +
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~-------~~~~~~~------------vi~Gd~~d~~~L   64 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ-------RLGDNAD------------VIPGDSNDSSVL   64 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH-------HHCTTCE------------EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHH-------hhcCCcE------------EEEccCcchHHH
Confidence            468999999999999999999999999999998754332111       1122220            11222      1


Q ss_pred             cc--cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           80 KD--LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 ~~--~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +.  +..||.||.+.+++..-. .+...+....+.-.+++...
T Consensus        65 ~~a~i~~a~~vi~~~~~d~~n~-~~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          65 KKAGIDRCRAILALSDNDADNA-FVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             HHHTTTTCSEEEECSSCHHHHH-HHHHHHHHHTSSSCEEEECS
T ss_pred             HHhccccCCEEEEccccHHHHH-HHHHHHHHhCCCCceEEEEc
Confidence            22  678999999988765422 22222344444444665433

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.7e-05  Score=48.51  Aligned_cols=35  Identities=40%  Similarity=0.663  Sum_probs=32.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +++|+|+|.|..|+-++.....-|++|.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            47899999999999999999999999999998764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.22  E-value=0.0012  Score=52.28  Aligned_cols=74  Identities=16%  Similarity=0.076  Sum_probs=48.7

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      -||+|||+|.||.. +...+... +++|+ ++|+++++++.+.+.          .|. ..       ..+...+|+++ 
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~----------~~i-~~-------~~~~~~~d~~el   95 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YGV-DP-------RKIYDYSNFDKI   95 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TTC-CG-------GGEECSSSGGGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh----------hcc-cc-------ccccccCchhhh
Confidence            48999999999975 44555444 67776 889999987765221          121 11       11223456666 


Q ss_pred             c--CCCcEEEEeccccHH
Q 022434           82 L--HSADIIVEAIVESED   97 (297)
Q Consensus        82 ~--~~aD~Vi~~v~e~~~   97 (297)
                      +  .+.|+|+.++|....
T Consensus        96 l~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          96 AKDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             GGCTTCCEEEECSCGGGH
T ss_pred             cccccceeeeeccchhhh
Confidence            4  358999999998765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.22  E-value=0.0015  Score=48.96  Aligned_cols=41  Identities=27%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +-.+|.|+|+|.+|...++.+...|.+|++.++++++++.+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            34689999999999999888999999999999999988765

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.22  E-value=0.00013  Score=55.68  Aligned_cols=65  Identities=12%  Similarity=0.263  Sum_probs=45.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.||+..+..+.+. +++++ ++|++++....                           .......+.+. .
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            5899999999999999888775 56655 66887642110                           11233444444 6


Q ss_pred             CCCcEEEEeccccHH
Q 022434           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .+.|+|+.|.|....
T Consensus        57 ~~~D~Vvi~tp~~~h   71 (170)
T d1f06a1          57 DDVDVLFLCMGSATD   71 (170)
T ss_dssp             TTCSEEEECSCTTTH
T ss_pred             cccceEEEeCCCccc
Confidence            788999999887654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.21  E-value=0.00013  Score=52.13  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|.-+|..|++.|.+|+++.+++.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            47899999999999999999999999999997754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.20  E-value=0.0017  Score=49.38  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a   68 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA   68 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHH
Confidence            3579999999999999998888996 799999999988876

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=0.00014  Score=56.28  Aligned_cols=35  Identities=14%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      -+||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            4789999999999999999999999 5999998754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00023  Score=50.11  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..||+|+|.|.+|+-+|....+.|++|.++|.+++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46899999999999999999999999999999876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.14  E-value=0.00016  Score=51.86  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|||+|..|.-+|..|++.|++|+++++++.-
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            68999999999999999999999999999987653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.13  E-value=0.00035  Score=53.36  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. .|++.|+++++++.+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a   69 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA   69 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHH
Confidence            3689999999999999999999997 588889999988776

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.12  E-value=0.00028  Score=50.59  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=33.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      +.++|.|||+|.+|.-+|..|++.|++|+++++.+.-
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4579999999999999999999999999999987643

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.12  E-value=0.00082  Score=56.41  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=52.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.++...+..+.. .. .+|.+|+|++++.+.+.+..+       ..+.           . ...++.++
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~~-----------~-~~~~~~~a  184 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRGI-----------S-ASVQPAEE  184 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTTC-----------C-EEECCHHH
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcCC-----------c-cccchhhh
Confidence            45789999999999999887765 33 379999999998877754432       2221           0 12333344


Q ss_pred             cCCCcEEEEeccccH
Q 022434           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      +.+||+|+.|.+...
T Consensus       185 ~~~aDiV~taT~s~~  199 (320)
T d1omoa_         185 ASRCDVLVTTTPSRK  199 (320)
T ss_dssp             HTSSSEEEECCCCSS
T ss_pred             hccccEEEEeccCcc
Confidence            888999999887544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.10  E-value=0.0044  Score=46.52  Aligned_cols=40  Identities=28%  Similarity=0.324  Sum_probs=34.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDG-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+ |.+|...++.+...| ..|+++++++++++.+
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~   69 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA   69 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHH
Confidence            358999995 999999998888888 4899999999988776

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00021  Score=51.41  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=32.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|.-+|..|+..|.+|+++++++.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            47899999999999999999999999999999754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.07  E-value=0.00015  Score=59.36  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+|+|||+|.-|...|..|+++|++|+++++++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.07  E-value=0.00012  Score=51.95  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .+++.|||+|..|.-+|..|++.|++|+++++.+.-+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            3789999999999999999999999999999875533

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.06  E-value=0.00018  Score=59.94  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|+|||+|.-|...|..|+++|++|+++|.++
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.05  E-value=0.0047  Score=46.83  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=36.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. +|+++|+++++++.+
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A   70 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA   70 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH
Confidence            4579999999999999999999995 799999999999887

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.04  E-value=0.00023  Score=59.77  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=32.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+||+|||+|.-|...|..|++.|++|++++.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            5799999999999999999999999999999775

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00092  Score=50.46  Aligned_cols=40  Identities=30%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.++++.+.++++.+.+
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA   70 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence            4689999999999999988888999999999999887665

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.00  E-value=0.00024  Score=58.29  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||+|||+|.-|..-|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.00039  Score=49.76  Aligned_cols=33  Identities=24%  Similarity=0.092  Sum_probs=31.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .++++|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            468999999999999999999999999999886

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.98  E-value=0.00028  Score=57.50  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|.|||+|.+|++.|..|++.|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.97  E-value=0.00027  Score=59.63  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHH
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPD   39 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~   39 (297)
                      ..++||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            45789999999999999999998876  69999998853

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.97  E-value=0.0011  Score=50.37  Aligned_cols=39  Identities=18%  Similarity=0.072  Sum_probs=36.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -+|.|||+|..|..-+......|..|+++|.++++++++
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l   68 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV   68 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHH
Confidence            489999999999999999999999999999999887776

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.92  E-value=0.0014  Score=55.29  Aligned_cols=74  Identities=20%  Similarity=0.276  Sum_probs=53.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.++..-+..+.. .+. +|.+|+|++++.+++.+.+.       +..          --.+...++.++
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~----------g~~v~~~~s~~e  189 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYS----------GLTIRRASSVAE  189 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCT----------TCEEEECSSHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hcc----------CCCceecCCHHH
Confidence            35789999999999988876543 454 79999999998877644321       110          112455777776


Q ss_pred             -cCCCcEEEEeccc
Q 022434           82 -LHSADIIVEAIVE   94 (297)
Q Consensus        82 -~~~aD~Vi~~v~e   94 (297)
                       +++||+|+.|.+.
T Consensus       190 av~~ADIi~t~Tas  203 (340)
T d1x7da_         190 AVKGVDIITTVTAD  203 (340)
T ss_dssp             HHTTCSEEEECCCC
T ss_pred             HHhcCCceeecccc
Confidence             8999999988754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.91  E-value=0.00051  Score=49.92  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=34.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      ..++|.|||+|..|.-+|..|++.|++|+++++.+.-+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            35799999999999999999999999999999876544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.89  E-value=0.0067  Score=45.62  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. .|++.|+++++++.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~   73 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA   73 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHH
Confidence            4689999999999998888877774 678889999988766

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.88  E-value=0.00023  Score=54.55  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCC---CChhh-hcccCCCcEEecCc
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLV-DTDPDALVRATKSISSSIQKFVSKGQ---LSQAV-GTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G-~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~-~~~~~~~i~~~~~~   79 (297)
                      -||+|.|.|.+|+.++..+.... ++|+.+ |+++.......          ...+.   ...+. ..-....+....+.
T Consensus         2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~v~g~~   71 (178)
T d1b7go1           2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIA----------HRRGIRIYVPQQSIKKFEESGIPVAGTV   71 (178)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHH----------HHTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHh----------cccCcceeccCccceeccccceecCCch
Confidence            48999999999999999988764 676655 66554322210          11111   01111 11111222333344


Q ss_pred             cc-cCCCcEEEEeccccH
Q 022434           80 KD-LHSADIIVEAIVESE   96 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~   96 (297)
                      .. ..++|+||||.+--.
T Consensus        72 ~~~~~~vDiViecTG~f~   89 (178)
T d1b7go1          72 EDLIKTSDIVVDTTPNGV   89 (178)
T ss_dssp             HHHHHHCSEEEECCSTTH
T ss_pred             hhhhhcCCEEEECCCCcC
Confidence            43 568999999998644

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.87  E-value=0.00026  Score=50.77  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .+++.|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            4789999999999999999999999999999876544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.87  E-value=0.00029  Score=58.01  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||+|..|..+|..|+++|++|+++|++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999999865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.86  E-value=0.0017  Score=49.19  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=34.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcE-EEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDV-WLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.++ ++.|+++++++.+
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a   69 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA   69 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHH
Confidence            468999999999999999988888765 5679999888776

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.85  E-value=0.0072  Score=50.65  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=36.0

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +-++|.|.|+ |.+|+.++..|+++||+|+...|+.++.+..
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            3579999988 9999999999999999999999998776554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.84  E-value=0.0071  Score=43.14  Aligned_cols=87  Identities=13%  Similarity=0.215  Sum_probs=56.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC------c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN------L   79 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~   79 (297)
                      +.|-|+|.|.+|..++..|  .|++|.++|.+++..+..           .+.|..            .+..|      +
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~-----------~~~~~~------------~i~Gd~~~~~~L   55 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV-----------LRSGAN------------FVHGDPTRVSDL   55 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH-----------HHTTCE------------EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH-----------HhcCcc------------ccccccCCHHHH
Confidence            4688999999999999998  478899999999877655           233321            11122      1


Q ss_pred             c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           80 K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .  .+..|+.+|.+.+++..- ..+...+....+.-.+++.
T Consensus        56 ~~a~i~~A~~vi~~~~~d~~n-~~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          56 EKANVRGARAVIVNLESDSET-IHCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             HHTTCTTCSEEEECCSSHHHH-HHHHHHHHHHCSSSCEEEE
T ss_pred             HHhhhhcCcEEEEeccchhhh-HHHHHHHHHHCCCceEEEE
Confidence            2  267899999988876542 2233334444444345553

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.82  E-value=0.0023  Score=46.95  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=55.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCcc
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLK   80 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   80 (297)
                      ++|+|||+ |..|.-+...|.+++|   ++..+..+.+                  .|..    .......+.. ..+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~------------------~Gk~----i~~~~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES------------------AGQR----MGFAESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT------------------TTCE----EEETTEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc------------------CCcc----eeeccccchhccchhh
Confidence            58999999 9999999999987765   5665543322                  1110    0011111122 12233


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ...++|++|.|+|....  .++..+   ....+++|+.+++..-
T Consensus        61 ~~~~~d~vf~a~p~~~s--~~~~~~---~~~~g~~VID~Ss~fR   99 (144)
T d2hjsa1          61 DFSSVGLAFFAAAAEVS--RAHAER---ARAAGCSVIDLSGALE   99 (144)
T ss_dssp             CGGGCSEEEECSCHHHH--HHHHHH---HHHTTCEEEETTCTTT
T ss_pred             hhccceEEEecCCcchh--hhhccc---cccCCceEEeechhhc
Confidence            47889999999986543  233333   3345677887877543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.81  E-value=0.0011  Score=53.65  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +||++| |+ +.+|.++|..|++.|++|++.||++++++...+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   45 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   45 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            477766 66 77999999999999999999999999887765443

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.79  E-value=0.0011  Score=48.95  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=53.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMD-GL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||+|||+ |+.|.-+...|.++ .|   ++..+..+..                  .|....  .......+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~------------------~gk~~~--~~~~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI------------------GVPAPN--FGKDAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC------------------SSBCCC--SSSCCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc------------------cccccc--cCCcceeeecccchh
Confidence            48999999 99999999877664 34   4444443321                  111100  000001111122333


Q ss_pred             ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ..+++|+||.|+|.+..  +++...+.+. ...++++++++..
T Consensus        61 ~~~~~DvvF~alp~~~s--~~~~~~l~~~-g~~~~VIDlSsdf  100 (147)
T d1mb4a1          61 SLKQLDAVITCQGGSYT--EKVYPALRQA-GWKGYWIDAASTL  100 (147)
T ss_dssp             HHTTCSEEEECSCHHHH--HHHHHHHHHT-TCCSEEEESSSTT
T ss_pred             hhccccEEEEecCchHH--HHHhHHHHHc-CCceEEEeCCccc
Confidence            47899999999997653  3444444432 2345677777753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.79  E-value=0.00065  Score=48.08  Aligned_cols=37  Identities=24%  Similarity=0.075  Sum_probs=30.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~   41 (297)
                      .++|.|||+|..|.-+|..|..   .|.+|+++++++.-+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            4799999999999999987655   488999999876533

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.79  E-value=0.00041  Score=49.37  Aligned_cols=37  Identities=11%  Similarity=-0.011  Sum_probs=33.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      -++|+|||+|..|.-+|..|+..|.+|+++++.+.-+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            4799999999999999999999999999999876543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.77  E-value=0.00042  Score=49.84  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=33.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .+++.|||+|..|.-+|..|++.|.+|+++++.+.-+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            4789999999999999999999999999999876543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.76  E-value=0.0013  Score=49.95  Aligned_cols=40  Identities=23%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...+..+...| ..|++.|+++++.+.+
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a   69 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA   69 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH
Confidence            368999999999999999999998 4889999999988876

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.75  E-value=0.00056  Score=48.48  Aligned_cols=37  Identities=19%  Similarity=0.056  Sum_probs=30.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~   41 (297)
                      .++|.|||+|..|.-+|..|..   .|.+|+++++.+.-+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            4799999999999999977665   456899999876544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.74  E-value=0.00049  Score=54.94  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ++|.|||+|.-|.+.|..|+++|+ +|+++|+++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            479999999999999999999996 799999864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.74  E-value=0.0054  Score=44.32  Aligned_cols=31  Identities=26%  Similarity=0.497  Sum_probs=23.5

Q ss_pred             EEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeCC
Q 022434            7 VMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDTD   37 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~-~G~~V~-~~d~~   37 (297)
                      ||+|+|+ |.||..++..+.+ .++++. .+|+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            7999995 9999999987655 456755 45543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.65  E-value=0.0017  Score=52.54  Aligned_cols=42  Identities=24%  Similarity=0.372  Sum_probs=35.8

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ||++| |+ +.+|.++|..|++.|++|++.+|+++++++..+.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l   46 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL   46 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67766 55 78999999999999999999999999888765543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.65  E-value=0.016  Score=46.63  Aligned_cols=43  Identities=16%  Similarity=0.100  Sum_probs=36.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      -+++-|.|+ +.+|.++|..|++.|++|++.+|++++++++.+.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~   49 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI   49 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            356777886 8899999999999999999999999888776443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.63  E-value=0.00014  Score=58.07  Aligned_cols=29  Identities=21%  Similarity=0.064  Sum_probs=25.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEE
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV   34 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~   34 (297)
                      |||+|||+|.+|.+.|..|+++|++|+++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            48999999999999999999999875443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00094  Score=55.36  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +..||.|||+|.-|..-|..|+++|++|++++.+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45689999999999999999999999999998764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0022  Score=51.95  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=35.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +.+-|.|+ +.+|.++|..|++.|++|++++|++++++++.+.+
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l   54 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAEC   54 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34555566 89999999999999999999999999888775443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.57  E-value=0.00088  Score=55.33  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=29.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|.+.|..|++.|. +|+++|+++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            479999999999999999999995 799999863

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.018  Score=45.84  Aligned_cols=43  Identities=14%  Similarity=0.064  Sum_probs=35.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +.+.|-|+ +-+|..+|..|++.|++|+++||++++++...+.+
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~   51 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   51 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34445577 67999999999999999999999999888775443

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.55  E-value=0.0027  Score=44.75  Aligned_cols=80  Identities=19%  Similarity=0.316  Sum_probs=55.7

Q ss_pred             cEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            6 KVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+    +..|..+...|.+.||+|..++++.+.+                             ..+.+..++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            68999996    6789999999999999998887664321                             12255677777


Q ss_pred             c-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 L-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      + ...|+++.++|.+.  ..++++++... ....++.
T Consensus        53 lp~~~D~vvi~vp~~~--~~~~l~~~~~~-g~k~v~~   86 (116)
T d1y81a1          53 LPKDVDVIVFVVPPKV--GLQVAKEAVEA-GFKKLWF   86 (116)
T ss_dssp             SCTTCCEEEECSCHHH--HHHHHHHHHHT-TCCEEEE
T ss_pred             ccccceEEEEEeCHHH--HHHHHHHHHhc-CCceEEe
Confidence            5 45699999998544  34566664432 2334444

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.025  Score=42.28  Aligned_cols=41  Identities=17%  Similarity=0.163  Sum_probs=35.4

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +-.+|.|+|+ |.+|....+.+...|.+|++.+.++++.+.+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~   69 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV   69 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccc
Confidence            3468999996 9999999998888999999999998877665

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.51  E-value=0.019  Score=46.85  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=35.0

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.| +|.+|.++|..|++.|++|++.||+.+++++..+.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            3444445 599999999999999999999999999887765443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.51  E-value=0.0064  Score=48.07  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|+|-|.|++|..+|..|.+.|..|++.|.++..++.+
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~   78 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA   78 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHH
Confidence            3689999999999999999999999999999999877655

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.0012  Score=52.10  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |++.. -|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         2 m~~~y-DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           2 IDTDY-DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             CCCBC-SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCcC-CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            54433 38899999999999999999999999999875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.46  E-value=0.00093  Score=52.91  Aligned_cols=34  Identities=26%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~   39 (297)
                      +||+|||+|.-|..-|..|+++  |++|+++|+.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            5899999999999999999775  789999998864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.42  E-value=0.0013  Score=53.52  Aligned_cols=30  Identities=33%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|..|++.|..|+++|++|+++|+.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            889999999999999999999999999975

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.41  E-value=0.0012  Score=53.30  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      .+|.|||+|.-|..+|..|+++|+ +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            489999999999999999999995 8999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.40  E-value=0.0016  Score=51.73  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=33.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..++|.|||+|.-|...|..|++.|++|++++++++
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            357999999999999999999999999999998764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.001  Score=55.16  Aligned_cols=33  Identities=21%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -.|.|||+|.-|+.+|..|++.|++|+++|.+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            479999999999999999999999999999774

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.02  Score=46.28  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ +-+|.++|..|++.|++|++.+|+++++++..+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666677 779999999999999999999999998887643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.33  E-value=0.0035  Score=50.87  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=36.2

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .||++| |+ +.+|.++|..|++.|++|++.+|+++++++..+.+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            456666 55 89999999999999999999999999888775544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.026  Score=46.37  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +.+.|.|+ +.+|.++|..|++.|++|++.+|++++++...+.+
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el   56 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL   56 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            44555576 78999999999999999999999999887765443

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.24  E-value=0.0051  Score=44.71  Aligned_cols=87  Identities=13%  Similarity=0.191  Sum_probs=60.1

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    +..|..++..|.++||+|+.+++..+.+                             ..+.+..+++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~   69 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVL   69 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCccccccc
Confidence            468999997    5799999999999999999998764321                             1124567777


Q ss_pred             ccC-CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           81 DLH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        81 ~~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++. ..|+++.++|...  ..++++++.+. ....+++ .+.+..
T Consensus        70 dlp~~iD~v~i~vp~~~--~~~~~~e~~~~-g~k~v~~-~~G~~~  110 (139)
T d2d59a1          70 DIPDKIEVVDLFVKPKL--TMEYVEQAIKK-GAKVVWF-QYNTYN  110 (139)
T ss_dssp             GCSSCCSEEEECSCHHH--HHHHHHHHHHH-TCSEEEE-CTTCCC
T ss_pred             ccCccceEEEEEeCHHH--HHHHHHHHHHh-CCCEEEE-eccccC
Confidence            754 6899999998543  45667765553 3344444 444443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.23  E-value=0.0039  Score=47.01  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=35.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...+..++..|- +|+..|+++++++.+
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a   69 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA   69 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHH
Confidence            4689999999999999998888876 688999999998876

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.23  E-value=0.028  Score=44.40  Aligned_cols=101  Identities=13%  Similarity=0.104  Sum_probs=58.5

Q ss_pred             CcEEEEECCChhHHHHHH----HHHH--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            5 MKVMGVVGSGQMGSGIAQ----LGVM--DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~----~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ..||||||+|.+|..++.    .+.+  .+++|+ ++|+++++++.+.+.          .+.          ......+
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~----------~~~----------~~~~~~~   75 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATGFD   75 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEEES
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHh----------ccc----------ccceeec
Confidence            458999999987654443    3443  357766 789999887665221          121          1123456


Q ss_pred             Cccc-c--CCCcEEEEeccccHHHHHHHHHHHHhhc---CCCeEEEecCCCCcHH
Q 022434           78 NLKD-L--HSADIIVEAIVESEDVKKKLFSELDKIT---KASAILASNTSSISIT  126 (297)
Q Consensus        78 ~~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~---~~~~ii~s~ts~~~~~  126 (297)
                      ++++ +  .+.|+|+.++|...... .+...++...   ....|++--.-+.+.+
T Consensus        76 ~~~~l~~~~~iD~V~i~tp~~~h~~-~~~~al~aG~~~~~~k~V~~EKPla~~~~  129 (237)
T d2nvwa1          76 SLESFAQYKDIDMIVVSVKVPEHYE-VVKNILEHSSQNLNLRYLYVEWALAASVQ  129 (237)
T ss_dssp             CHHHHHHCTTCSEEEECSCHHHHHH-HHHHHHHHSSSCSSCCEEEEESSSSSSHH
T ss_pred             chhhcccccccceeeccCCCcchhh-HHHHHHHhcccccCCceEEEeccccCCHH
Confidence            7766 3  46899999999776532 2233343321   2234666544445543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.21  E-value=0.0038  Score=46.17  Aligned_cols=55  Identities=13%  Similarity=0.004  Sum_probs=37.9

Q ss_pred             cEEEEE--CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH-HHHHHHHHHcCC
Q 022434            6 KVMGVV--GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI-SSSIQKFVSKGQ   60 (297)
Q Consensus         6 ~~I~vi--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~g~   60 (297)
                      +++.|+  |.|.+|..+|..|++.|++|+++++.+.-+....... ....+.+.+.|.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV   97 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHV   97 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccc
Confidence            455555  9999999999999999999999998765443332222 233344455553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.21  E-value=0.013  Score=45.13  Aligned_cols=40  Identities=28%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. .|++.|+++++++.+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a   66 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA   66 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh
Confidence            4689999999999877777767776 788999999998876

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.18  E-value=0.0046  Score=44.38  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL   79 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      -++|+|||+    |.+|..+..+|...| ++|+.++++.+.+                             ..+.+..++
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl   58 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSV   58 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSST
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecch
Confidence            479999998    889999999988766 6899888775321                             123566777


Q ss_pred             cccC-CCcEEEEeccccHHHHHHHHHHHHhh
Q 022434           80 KDLH-SADIIVEAIVESEDVKKKLFSELDKI  109 (297)
Q Consensus        80 ~~~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~  109 (297)
                      +++. ..|+++.++|.+.  ..++++++.+.
T Consensus        59 ~dlp~~vDlvvi~vp~~~--~~~~~~~~~~~   87 (129)
T d2csua1          59 KDIPDEIDLAIIVVPKRF--VKDTLIQCGEK   87 (129)
T ss_dssp             TSCSSCCSEEEECSCHHH--HHHHHHHHHHH
T ss_pred             hhcCCCCceEEEecChHH--hHHHHHHHHHc
Confidence            7754 5899999998544  44666665544

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.15  E-value=0.0027  Score=48.38  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=54.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVD-TDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |.||+|||+ |..|.-+...|..+ .+++.... ++.+..  +.+.+......+  .+.        .........+...
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~--aGk~~~~~~~~~--~~~--------~~~~~~~~~~~~~   68 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSND--AGKLISDLHPQL--KGI--------VDLPLQPMSDVRD   68 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTT--TTCBHHHHCGGG--TTT--------CCCBEEEESCGGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccc--cccccccccccc--ccc--------cccccccchhhhh
Confidence            468999998 99999999999997 66776442 211100  000000000000  000        0011122233333


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                       ..++|++|.|+|....  .+...   .....++.++.+++..-
T Consensus        69 ~~~~~dvvf~alp~~~s--~~~~~---~~~~~~~~vIDlSadfR  107 (179)
T d2g17a1          69 FSADVDVVFLATAHEVS--HDLAP---QFLQAGCVVFDLSGAFR  107 (179)
T ss_dssp             TCTTCCEEEECSCHHHH--HHHHH---HHHHTTCEEEECSSTTS
T ss_pred             hhcccceeeccccchhH--HHHhh---hhhhcCceeeccccccc
Confidence             5789999999986553  22222   23345666776766543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.15  E-value=0.0013  Score=49.85  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=27.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEE-eCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLV-DTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~-d~~~~   39 (297)
                      |.+|+|-|.|.+|+.+...+...+ .+|+.+ |+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            468999999999999999887765 566644 66544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.14  E-value=0.0062  Score=48.66  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+-+++-|.|+ +.+|.++|..|++.|++|++.||++++++..
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~   45 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            5444456666676 7799999999999999999999999887765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.13  E-value=0.0058  Score=49.38  Aligned_cols=42  Identities=33%  Similarity=0.408  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +.+.|.|+ +.+|.++|..|++.|++|++.|++++++++..+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS   48 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            44556677 7799999999999999999999999988776444

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0051  Score=46.20  Aligned_cols=72  Identities=24%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|+|||-+. +|+++|..|++.|..|++++.....+..                                     .++
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~-------------------------------------~~~   81 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE-------------------------------------EVN   81 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH-------------------------------------HHT
T ss_pred             cceEEEEecCCccchHHHHHHHhccCceEEEecccccHHH-------------------------------------HHh
Confidence            47899999955 7999999999999999999865432221                                     145


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ++|++|.++....-++       .++++++++++.-.
T Consensus        82 ~aDivi~a~G~~~~i~-------~~~vk~g~iviDvg  111 (170)
T d1a4ia1          82 KGDILVVATGQPEMVK-------GEWIKPGAIVIDCG  111 (170)
T ss_dssp             TCSEEEECCCCTTCBC-------GGGSCTTCEEEECC
T ss_pred             hccchhhccccccccc-------cccccCCCeEeccC
Confidence            7999999987543322       24677888776443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.12  E-value=0.0068  Score=49.41  Aligned_cols=44  Identities=20%  Similarity=0.321  Sum_probs=36.3

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+-+++.|-|+ +.+|.++|..|++.|++|++.||+++++++.
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~   45 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL   45 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4433456666677 8999999999999999999999999887665

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.11  E-value=0.0056  Score=49.34  Aligned_cols=45  Identities=24%  Similarity=0.260  Sum_probs=36.1

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      |.-+-+++-|.|+ +.+|.++|..|++.|++|++.||++++++...
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~   46 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATA   46 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4433345556676 88999999999999999999999998877653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.007  Score=48.38  Aligned_cols=40  Identities=23%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -+++-|.|+ +.+|.++|..|++.|++|++.||+++++++.
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~   47 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL   47 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            356777777 8899999999999999999999999887765

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0048  Score=49.76  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      |+++| |+ +.+|.++|..|++.|++|++.+|+++++++..+.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l   55 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            55555 55 88999999999999999999999999887765443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.008  Score=48.25  Aligned_cols=42  Identities=26%  Similarity=0.277  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +.+-|.|+ +.+|.++|..|++.|++|++.|++++++++..+.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   48 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK   48 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45556677 7799999999999999999999999888766444

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0075  Score=48.13  Aligned_cols=44  Identities=18%  Similarity=0.096  Sum_probs=36.6

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+-+++-|.|+ +.+|.++|..|++.|++|++.+|+++++++.
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   45 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSL   45 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4444566667787 7899999999999999999999999877665

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.04  E-value=0.019  Score=45.69  Aligned_cols=39  Identities=26%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +.+-|-|+ +.+|.++|..|++.|++|++.||++++++..
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   46 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   46 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34445577 7899999999999999999999999887665

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.02  E-value=0.0095  Score=48.02  Aligned_cols=43  Identities=19%  Similarity=0.170  Sum_probs=35.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ +-+|.++|..|++.|++|++.||+++++++..+.+
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            44555677 77999999999999999999999999887765443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.01  E-value=0.0043  Score=50.52  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++-|.|+ +.+|.++|..|++.|++|++.+|+++++++..+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l   49 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII   49 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34444566 88999999999999999999999999888765443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0027  Score=47.48  Aligned_cols=34  Identities=12%  Similarity=0.089  Sum_probs=29.8

Q ss_pred             CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -++|+|||-+. +|+++|..|.+.|..|++.+...
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            47899999965 89999999999999999997654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0037  Score=50.13  Aligned_cols=44  Identities=16%  Similarity=0.123  Sum_probs=34.8

Q ss_pred             CCCCCcEEEEE-C-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            1 MEEKMKVMGVV-G-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~I~vi-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.+-..|+++| | ++.+|.++|..|++.|++|++.||+++++++.
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~   46 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL   46 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            54333456666 5 59999999999999999999999998876543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0025  Score=53.06  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=29.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|.+-|..|+++|++|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999999754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.97  E-value=0.0023  Score=49.12  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |+....+|.|||+|.-|..-|..+++.|.+|+++|..
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            6667789999999999999999999999999999854

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.96  E-value=0.0029  Score=50.43  Aligned_cols=32  Identities=28%  Similarity=0.354  Sum_probs=30.0

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            88999999999999999999999999998753

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.94  E-value=0.0059  Score=49.73  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++-|-|+ +.+|.++|..|++.|++|++.||+++++++..+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   48 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   48 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34445566 78999999999999999999999999888765543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.92  E-value=0.0058  Score=49.12  Aligned_cols=42  Identities=14%  Similarity=0.175  Sum_probs=35.1

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      .||++| |+ +.+|.++|..|++.|++|+++||+++.++...+.
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~   53 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE   53 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            356655 76 7899999999999999999999999988776444

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.92  E-value=0.0051  Score=46.33  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=33.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|. .|+..|+++++++.+
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~a   69 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA   69 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHH
Confidence            4689999999999998888888886 577789999888766

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.92  E-value=0.0017  Score=51.37  Aligned_cols=33  Identities=21%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-------cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-------DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-------~V~~~d~~~   38 (297)
                      .||+|||+|.-|.+-|..|+++||       +|++||+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            489999999999999999999984       799999876

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.91  E-value=0.0031  Score=53.12  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      +.++|.|+|+ |.+|+.++..|++.||+|++..|++++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            4578999997 9999999999999999999999987654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.91  E-value=0.0052  Score=49.65  Aligned_cols=43  Identities=19%  Similarity=0.265  Sum_probs=34.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++-|.|+ +.+|.++|..|++.|++|++.+++++++++..+.+
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~   53 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   53 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            44555576 77999999999999999999999988777664443

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.89  E-value=0.0062  Score=45.97  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEE-EEeCCHHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVW-LVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G-~~V~-~~d~~~~~   40 (297)
                      .||+|.|.|.+|+.+...+.... ++|+ +.|+++..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            58999999999999999887654 5655 44666543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.87  E-value=0.01  Score=47.79  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=35.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +.+-|-|+ +.+|.++|..|++.|++|.+.|+++++++...+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~   48 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   48 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34555576 78999999999999999999999999887764443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0043  Score=49.65  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=32.9

Q ss_pred             EEE-EECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            7 VMG-VVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         7 ~I~-viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ||+ |.|+ +.+|.++|..|++.|++|++.||+++.++...
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            455 4566 88999999999999999999999998777653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.85  E-value=0.0069  Score=48.90  Aligned_cols=42  Identities=17%  Similarity=0.094  Sum_probs=34.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++-|.|+ +.+|.++|..|++.|++|++.+|+++++++..+.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~   51 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34545566 7899999999999999999999999988776444

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.84  E-value=0.0036  Score=50.87  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .+||.|+|+ |.+|+.++..|.++||+|++++|++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999998 999999999999999999999997654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0023  Score=51.45  Aligned_cols=34  Identities=21%  Similarity=0.122  Sum_probs=31.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|..|...|..|+++|++|.++|+++.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4699999999999999999999999999999865

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.81  E-value=0.0035  Score=51.84  Aligned_cols=34  Identities=26%  Similarity=0.123  Sum_probs=31.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -.|.|||+|.-|..+|..|.+.|++|+++|++++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            3699999999999999999999999999998753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.80  E-value=0.041  Score=43.54  Aligned_cols=39  Identities=26%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++-|.|+ +.+|.++|..|++.|++|++.+|+.++++..
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45666677 6799999999999999999999999877654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.79  E-value=0.0035  Score=46.99  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~   38 (297)
                      +||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            699999999999999999999885  789998876

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.73  E-value=0.01  Score=48.01  Aligned_cols=40  Identities=30%  Similarity=0.329  Sum_probs=33.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +.+.|.|+ +.+|.++|..|++.|++|++.|++++++++..
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   47 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC   47 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            34445566 78999999999999999999999998877663

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.72  E-value=0.019  Score=45.96  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+++| |+ +.+|.++|..|++.|++|++.|++++++++.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~   46 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL   46 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45555 65 7899999999999999999999999887765

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.71  E-value=0.037  Score=44.27  Aligned_cols=39  Identities=23%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ +.+|.++|..|++.|++|++.||+++++++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   45 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT   45 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            55667777 7899999999999999999999999877654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.70  E-value=0.0058  Score=51.56  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=31.3

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +.|||.|.|+ |.+|+.++..|.+.||+|+++|+..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            4578999987 9999999999999999999998754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.70  E-value=0.0045  Score=50.62  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +.+||.|+|+ |.+|+.++..|+++||+|++..|++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            3468999997 99999999999999999999998754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0081  Score=48.82  Aligned_cols=43  Identities=21%  Similarity=0.121  Sum_probs=36.6

Q ss_pred             cEEEEE--CCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVV--GSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~vi--G~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|+||  |.+-+|..+|..|++. |+.|++.+|++++++.+.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            689988  5588999999999975 899999999999888775544

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0057  Score=44.25  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CcEEEEECCChhHHHHHHHHH----HCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGV----MDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~----~~G~~V~~~d~~~~~~   41 (297)
                      .++|.|||+|..|.-+|..|+    ..|.+|+++++++.-+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            468999999999999999885    3589999998876544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0088  Score=47.73  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      |++|| |+ +.+|.++|..|++.|++|++.||+++++++..
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~   45 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAIS   45 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            45555 76 88999999999999999999999998877653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.64  E-value=0.0034  Score=52.47  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             EEEEECCChhHHHHHHHHH-----HCCCcEEEEeCCHH
Q 022434            7 VMGVVGSGQMGSGIAQLGV-----MDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~-----~~G~~V~~~d~~~~   39 (297)
                      -|.|||+|..|+.+|..|+     ++|++|+++|+++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            4899999999999999996     58999999998754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.012  Score=47.08  Aligned_cols=39  Identities=31%  Similarity=0.356  Sum_probs=33.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++-|.|+ +.+|.++|..|++.|++|++.||++++++.+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~   46 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL   46 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45556676 8999999999999999999999999887765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.54  E-value=0.01  Score=44.59  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +-.+|.|.|+ |.+|....+.+...|.+|+..++++++.+.+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP   68 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence            3468999996 9999999888888999999999998877765

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.47  E-value=0.01  Score=47.53  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      |+++| |+ +.+|.++|..|++.|++|++.+++++.++...
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   47 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA   47 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            55555 65 88999999999999999999999998877653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.016  Score=46.56  Aligned_cols=43  Identities=14%  Similarity=0.174  Sum_probs=36.5

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHH
Q 022434            6 KVMGVV-GS-GQMGSGIAQLGVM---DGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~I~vi-G~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .||+|| |+ +.+|.++|..|++   .|++|++.+|++++++.+.+.+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l   53 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence            578888 66 6899999999986   7999999999999888775544

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.016  Score=46.36  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .+-|.|+ +.+|.++|..|++.|++|++.||+++++++..+
T Consensus         5 valITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            4445576 789999999999999999999999998876643

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.38  E-value=0.034  Score=40.83  Aligned_cols=91  Identities=18%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-cc
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-KD   81 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   81 (297)
                      ||+|||+ |..|.-+...|.++.++   +..+..+..                  .|..    .............. ..
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------------------~G~~----~~~~~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------------------AGKS----LKFKDQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------------------TTCE----EEETTEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------------------cccc----ccccCCcccccccchhh
Confidence            7999999 99999999999988763   333332211                  1210    00111111222222 33


Q ss_pred             cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ..++|+++.+.|.....  ...   .+....++.|+++++..-
T Consensus        61 ~~~~d~~f~~~~~~~s~--~~~---~~~~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          61 FEGVDIALFSAGSSTSA--KYA---PYAVKAGVVVVDNTSYFR   98 (154)
T ss_dssp             TTTCSEEEECSCHHHHH--HHH---HHHHHTTCEEEECSSTTT
T ss_pred             hhhhhhhhhccCccchh--hHH---hhhccccceehhcChhhh
Confidence            77899999999865542  222   233346778887887654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.35  E-value=0.013  Score=46.39  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=32.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      +++-|.|+ +.+|.++|..|++.|++|++.||+++.+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            56777787 789999999999999999999999876543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=95.33  E-value=0.038  Score=39.70  Aligned_cols=83  Identities=16%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~I~viG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    +..|..+...|.+.||++..+..++...                           ......+..++.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~   65 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLL   65 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchh
Confidence            468999998    7899999999999999999998775310                           011234566777


Q ss_pred             cc-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           81 DL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ ...|+++.++|...  ..++++++.+. ...+++.
T Consensus        66 ~i~~~iD~v~v~~p~~~--v~~~v~~~~~~-g~k~i~~  100 (136)
T d1iuka_          66 DLKEPVDILDVFRPPSA--LMDHLPEVLAL-RPGLVWL  100 (136)
T ss_dssp             GCCSCCSEEEECSCHHH--HTTTHHHHHHH-CCSCEEE
T ss_pred             hccCCCceEEEeccHHH--HHHHHHHHHhh-CCCeEEE
Confidence            75 45799999998543  34556665443 2345554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0088  Score=43.88  Aligned_cols=32  Identities=22%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      -++|.|||+|.+|..-|..|+++|.+|+++++
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            47999999999999999999999999999964

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.32  E-value=0.015  Score=45.21  Aligned_cols=39  Identities=10%  Similarity=0.003  Sum_probs=32.3

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEE--eCCHHHHH
Q 022434            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLV--DTDPDALV   42 (297)
Q Consensus         4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~--d~~~~~~~   42 (297)
                      ++++|.|.|+ |.+|+.++..|++.|++|.++  .|++++.+
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~   43 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE   43 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence            4789999996 999999999999999886654  57776544

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0072  Score=48.31  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=29.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            589999999999999999999998 78999865

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.23  E-value=0.071  Score=42.68  Aligned_cols=35  Identities=23%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             CcEEEEECC-C--hhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGS-G--QMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~-G--~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -+++.|.|+ |  -+|.++|..|++.|++|++.+|+++
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            356778886 5  4999999999999999999999965

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.18  E-value=0.14  Score=40.58  Aligned_cols=38  Identities=24%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             cEEEEECC-C--hhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            6 KVMGVVGS-G--QMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~viG~-G--~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      +++-|.|+ |  -+|.++|..|++.|++|++.+++++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            56667787 4  49999999999999999999998765443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.15  E-value=0.019  Score=45.65  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=34.6

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCc-------EEEEeCCHHHHHHHHHH
Q 022434            6 KVMGVV-GS-GQMGSGIAQLGVMDGLD-------VWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~vi-G~-G~mG~~iA~~l~~~G~~-------V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.+| |+ +.+|.++|..|++.|++       |.++++++++++...+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~   51 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE   51 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH
Confidence            466655 77 77999999999999998       99999999988776443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.05  E-value=0.023  Score=45.58  Aligned_cols=41  Identities=27%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKS   47 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~   47 (297)
                      |+++| |+ +.+|.++|..|++.|++|++.+++ ++.++...+.
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~   48 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG   48 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH
Confidence            45555 55 779999999999999999999997 4555555433

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.03  E-value=0.0088  Score=44.99  Aligned_cols=34  Identities=18%  Similarity=0.080  Sum_probs=30.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..+|.|||+|..|.-+|..|.+.|.+|+++.+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            4689999999999999999999999988876554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.96  E-value=0.12  Score=41.34  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH-HHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP-DALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~   44 (297)
                      +++-|.|+ +.+|.++|..|++.|++|++.+++. +.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            44555565 9999999999999999999998874 444444

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.95  E-value=0.0069  Score=48.83  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||.|.|+ |.+|+.++..|.+.||+|+..|+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            57999998 9999999999999999999999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.90  E-value=0.0095  Score=47.58  Aligned_cols=33  Identities=12%  Similarity=0.172  Sum_probs=27.9

Q ss_pred             EEE-EECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            7 VMG-VVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~-viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ||. |.|+ +.+|.++|..|++.|++|++.|++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            454 5576 78999999999999999999998754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.88  E-value=0.01  Score=45.48  Aligned_cols=33  Identities=12%  Similarity=0.021  Sum_probs=28.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~   38 (297)
                      |||.|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999886  45799998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.86  E-value=0.0092  Score=44.20  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=27.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .||.|||+|..|.-+|..|.+ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999998864 78999998753

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.079  Score=42.00  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             cEEEEECCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGSG---QMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|-|.|++   -+|.++|..|++.|++|++.+++++..+.+
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            566666764   378999999999999999999996644443

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.014  Score=48.73  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=29.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      |||.|+|+ |.+|+.++..|++.||+|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            47999988 99999999999999999999986

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=94.78  E-value=0.011  Score=47.98  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             EEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~-~G~~V~~~d~~~~   39 (297)
                      -|.|||+|.-|...|..|++ .|++|+++|+.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            49999999999999999987 5999999998753

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.75  E-value=0.028  Score=42.59  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEe
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVD   35 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d   35 (297)
                      ..||+|||+ |..|.-+...|.++ .+++..+.
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            458999999 99999999999986 34666553

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.61  E-value=0.061  Score=40.27  Aligned_cols=40  Identities=10%  Similarity=0.100  Sum_probs=34.4

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|.|+ |.+|...++.+...|.+|++.++++++.+.+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l   66 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   66 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeeccccccccc
Confidence            367888886 9999999999999999999999998877655

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.01  Score=45.11  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=30.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -++|.|||.|.-|..-|..+++.|.+|+++++.
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            467999999999999999999999999999865

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.017  Score=44.73  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|...|..+++.|.+|++++++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999976

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.49  E-value=0.016  Score=49.43  Aligned_cols=33  Identities=27%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             EEEEECCChhHHHHHHHHHH------CCCcEEEEeCCHH
Q 022434            7 VMGVVGSGQMGSGIAQLGVM------DGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~------~G~~V~~~d~~~~   39 (297)
                      -|.|||+|.-|+..|..|++      .|++|.++|+...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            38999999999999999997      8999999998643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.37  E-value=0.019  Score=44.97  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|..-|..+++.|++|+++|.++
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999999764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=94.36  E-value=0.017  Score=47.31  Aligned_cols=31  Identities=35%  Similarity=0.499  Sum_probs=29.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|...|..+++.|++|++++..+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            8999999999999999999999999999753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.018  Score=44.90  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -|.|||+|.-|..-|..+++.|++|+++|..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            38999999999999999999999999999753

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.30  E-value=0.034  Score=44.29  Aligned_cols=37  Identities=32%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      +++-|-|+ +.+|.++|..|++.|++|.+.|++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            45556675 89999999999999999999999987644

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.27  E-value=0.049  Score=43.18  Aligned_cols=41  Identities=27%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             EEEE-CC-ChhHHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHH
Q 022434            8 MGVV-GS-GQMGSGIAQLGVMDGLDVWLVD-TDPDALVRATKSI   48 (297)
Q Consensus         8 I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~   48 (297)
                      |.+| |+ +.+|.++|..|++.|++|++.+ ++++.++...+.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~   46 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI   46 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            5555 55 8899999999999999999864 5777666654443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.26  E-value=0.022  Score=47.47  Aligned_cols=36  Identities=19%  Similarity=0.059  Sum_probs=32.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      +||.|.|+ |.+|+.++..|++.|++|.++|++..+.
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~   45 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV   45 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence            89999986 9999999999999999999999976543

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.19  E-value=0.054  Score=43.11  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             EEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            8 MGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         8 I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |+|| |+ +.+|.++|..|+++|++|++.+++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            5555 55 7799999999999999999999986543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.18  E-value=0.039  Score=44.16  Aligned_cols=42  Identities=24%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKS   47 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~   47 (297)
                      +.+.|.|+ +.+|.++|..|++.|++|++. +++++.++...+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~   50 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAE   50 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHH
Confidence            34444565 789999999999999999985 5676666665443

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.16  E-value=0.095  Score=39.25  Aligned_cols=96  Identities=11%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE-EecCccc
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR-CTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~   81 (297)
                      |.||+|+|+ |..|.-+...|+++= +++..+-.+...    .+.+.....              ....... ...+.++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a----G~~i~~~~p--------------~~~~~~~~~~~~~~~   62 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA----GKKLEEIFP--------------STLENSILSEFDPEK   62 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT----TSBHHHHCG--------------GGCCCCBCBCCCHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC----CCcccccCc--------------hhhccccccccCHhH
Confidence            368999999 999999999998863 455555322110    001110000              0011111 1223334


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                       .+++|+++.|+|.....  +..    ... .++.|+.+++..-.
T Consensus        63 ~~~~~dvvf~a~p~~~s~--~~~----~~~-~~~~VIDlSadfRl  100 (176)
T d1vkna1          63 VSKNCDVLFTALPAGASY--DLV----REL-KGVKIIDLGADFRF  100 (176)
T ss_dssp             HHHHCSEEEECCSTTHHH--HHH----TTC-CSCEEEESSSTTTC
T ss_pred             hccccceEEEccccHHHH--HHH----Hhh-ccceEEecCccccc
Confidence             46799999999987642  222    222 45677778876654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.13  E-value=0.041  Score=44.12  Aligned_cols=38  Identities=16%  Similarity=0.109  Sum_probs=30.2

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRA   44 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~   44 (297)
                      |++|| |+ +.+|.++|..|++.|++|++.+|+.+ .++..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~   48 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV   48 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence            45555 65 88999999999999999999999854 44444

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.02  Score=49.57  Aligned_cols=32  Identities=22%  Similarity=0.478  Sum_probs=29.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .||.|||+|.+|+.++..|+..|+ +++++|.+
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            589999999999999999999998 89999975

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.026  Score=46.47  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=29.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999988 99999999999999999999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.05  E-value=0.14  Score=38.21  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|.|+ |.+|...++.....|.+|+..++++++.+.+
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~   70 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL   70 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH
Confidence            467888888 7788888888888999999999999887765

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.03  E-value=0.027  Score=45.09  Aligned_cols=37  Identities=24%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             CcEEEEECC-Ch--hHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434            5 MKVMGVVGS-GQ--MGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~I~viG~-G~--mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      -+++.|.|+ |.  +|.++|..|++.|++|++.+++.+++
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            357778886 65  99999999999999999999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.02  E-value=0.02  Score=45.21  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .||-|.|+ +.+|.++|..|+++|++|++.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            57888887 99999999999999999999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.00  E-value=0.019  Score=44.36  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|...|..+++.|.+|+++|.++
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999999753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.99  E-value=0.16  Score=40.35  Aligned_cols=43  Identities=16%  Similarity=0.150  Sum_probs=33.1

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |.-+-++|-|.|+ +.+|..+|..|++.|.+|++.+++.+..+.
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~   44 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA   44 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH
Confidence            5445567777777 679999999999999999888776554443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.033  Score=46.32  Aligned_cols=31  Identities=23%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999987 99999999999999999999984

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.80  E-value=0.028  Score=47.69  Aligned_cols=30  Identities=27%  Similarity=0.289  Sum_probs=28.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEe
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      |||.|.|+ |.+|+.++..|++.||+|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            68999988 9999999999999999999998

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.79  E-value=0.026  Score=42.58  Aligned_cols=42  Identities=14%  Similarity=-0.077  Sum_probs=35.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +-.+|-.+|+|. | ..+..|++.|++|+.+|.+++.++.++++
T Consensus        20 ~~~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          20 PGARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             TTCEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CCCEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            346899999997 3 47778899999999999999999887554

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=93.78  E-value=0.026  Score=47.18  Aligned_cols=30  Identities=33%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      -|.|||+|.-|+.+|..|+++|++|.++++
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            488999999999999999999999999986

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.76  E-value=0.025  Score=42.30  Aligned_cols=34  Identities=21%  Similarity=-0.043  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCC--CcEEEEeC
Q 022434            3 EKMKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDT   36 (297)
Q Consensus         3 ~~~~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~   36 (297)
                      +...+|+|||+|.||...+..+.+..  ..+.+++.
T Consensus         5 ~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~   40 (172)
T d1lc0a1           5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF   40 (172)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            34568999999999999887765532  23555543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=93.73  E-value=0.15  Score=40.56  Aligned_cols=93  Identities=18%  Similarity=0.198  Sum_probs=59.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc--
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD--   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   81 (297)
                      +-++|.=+|+|. | .++..+++.|.+|+.+|.|++.++.+++.++       ..|. .        .++ ...+..+  
T Consensus       120 ~g~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~-------~n~~-~--------~~~-~~~d~~~~~  180 (254)
T d2nxca1         120 PGDKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAK-------RNGV-R--------PRF-LEGSLEAAL  180 (254)
T ss_dssp             TTCEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHH-------HTTC-C--------CEE-EESCHHHHG
T ss_pred             ccCEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHH-------HcCC-c--------eeE-Eeccccccc
Confidence            346888999997 4 3455678889999999999998887754432       1221 1        111 2233322  


Q ss_pred             -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                       -...|+|+..+.  ......++.++.+.++++..++
T Consensus       181 ~~~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         181 PFGPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             GGCCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence             245788887654  2334567777877777766544

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=93.73  E-value=0.029  Score=47.07  Aligned_cols=31  Identities=16%  Similarity=0.117  Sum_probs=28.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -|.|||+|.-|+.+|..|+++|++|.++++-
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            3779999999999999999999999999873

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=93.71  E-value=0.024  Score=46.76  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -|.|||+|.-|...|..++++|++|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.031  Score=41.76  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -|.|||+|.-|...|..+++.|.+|+++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3789999999999999999999999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.3  Score=36.04  Aligned_cols=40  Identities=13%  Similarity=-0.044  Sum_probs=34.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|.|+ |.+|....+.+...|.+|+..++++++.+.+
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~   69 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA   69 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH
Confidence            468999966 5599888888888999999999999988766

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.60  E-value=0.037  Score=45.31  Aligned_cols=33  Identities=27%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|-|.|+ |.+|+.++..|++.||+|+.+|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57889988 9999999999999999999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.04  Score=42.46  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|...|..+++.|.+|+++|.+
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.35  E-value=0.072  Score=37.08  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             CCCcEEEEECCC-----------hhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            3 EKMKVMGVVGSG-----------QMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         3 ~~~~~I~viG~G-----------~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +..++|.|||+|           ..+...+..|.+.|+++++++.||+
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            456899999998           5677788889999999999999997

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.32  E-value=0.043  Score=42.23  Aligned_cols=30  Identities=30%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|...|..+++.|.+|+++++.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            789999999999999999999999999875

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.30  E-value=0.032  Score=43.19  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .|.|||+|.-|...|..+++.|.+|++++.+
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4899999999999999999999999999975

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.30  E-value=0.091  Score=42.16  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=31.4

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKS   47 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~   47 (297)
                      -|+|| |+ +.+|.++|..|++.|++|++.++ +++.+++..+.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~   46 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   46 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Confidence            47777 55 78999999999999999998765 55555555443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.28  E-value=0.1  Score=41.16  Aligned_cols=31  Identities=26%  Similarity=0.204  Sum_probs=27.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEe
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      -++|+|=|.|++|...|..|.+.|..|+.++
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            3689999999999999999999999987554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.24  E-value=0.023  Score=47.43  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +|||.|.|+ |.+|+.++..|.++|++|.++.+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            579999986 99999999999999998766654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=93.19  E-value=0.038  Score=46.35  Aligned_cols=31  Identities=26%  Similarity=0.224  Sum_probs=28.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -+-|||+|.-|+.+|..|+++|++|+++++-
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3779999999999999999999999999963

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.13  E-value=0.076  Score=41.80  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +++-|.|+ +.+|.++|..|++.|++|.+.+|+++
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            45555576 67999999999999999999999865

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.09  E-value=0.031  Score=43.69  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=28.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|..-|..+++.|++|.++|..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999953

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.042  Score=43.00  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=30.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~   39 (297)
                      .++|.|.|+ |.+|+.++..|.+.|.  +|++++|++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            368999998 9999999999999994  8999998764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.97  E-value=0.019  Score=43.24  Aligned_cols=30  Identities=13%  Similarity=0.083  Sum_probs=26.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +|.|||+|..|..+|..|.+.|++|.++.+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEE
Confidence            599999999999999999999988776654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.81  E-value=0.11  Score=38.78  Aligned_cols=39  Identities=18%  Similarity=0.074  Sum_probs=33.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|-|+ |.+|....+.....|.+|+...+++++.+.+
T Consensus        33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~   72 (176)
T d1xa0a2          33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL   72 (176)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred             CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH
Confidence            56889885 9999888888888999999999999887766

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.78  E-value=0.037  Score=43.40  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=28.5

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++-|-|+ +.+|.++|..|++.|++|++.|++++.
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            3444466 899999999999999999999998653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.75  E-value=0.51  Score=35.36  Aligned_cols=93  Identities=18%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc--c
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD--L   82 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--~   82 (297)
                      .+|.=||+|. |. .+..|++.|++|+.+|.+++.++.+++...       +.|.          .++.+ ..|...  .
T Consensus        32 grvLDiGcG~-G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~-------~~~~----------~~~~~~~~d~~~~~~   92 (198)
T d2i6ga1          32 GRTLDLGCGN-GR-NSLYLAANGYDVTAWDKNPASMANLERIKA-------AEGL----------DNLQTDLVDLNTLTF   92 (198)
T ss_dssp             CEEEEETCTT-SH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTC----------TTEEEEECCTTTCCC
T ss_pred             CcEEEECCCC-CH-HHHHHHHHhhhhccccCcHHHHHHHHHHhh-------hccc----------cchhhhheecccccc
Confidence            4788999993 43 566788999999999999998887754432       1221          22222 223322  2


Q ss_pred             -CCCcEEEEecc-c--cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           83 -HSADIIVEAIV-E--SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 -~~aD~Vi~~v~-e--~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                       ..-|+|+.... .  +......+++++.+.++++.++.
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred             cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence             33588875331 1  11224578888888888776544

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.72  E-value=0.049  Score=42.89  Aligned_cols=35  Identities=23%  Similarity=0.141  Sum_probs=31.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -++|-|.|+ |.+|.++|..|++.|++|.++|+++.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            468889988 88999999999999999999998653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.054  Score=44.83  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             cEEE-EECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMG-VVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~-viG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +||+ |.|+ |.+|+.++..|.+.||+|+.+||..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5784 7777 9999999999999999999999864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.59  E-value=0.061  Score=44.29  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=28.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      +++-|.|+ |.+|+.++..|++.||+|+.+|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            45667787 999999999999999999999985

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.57  E-value=0.067  Score=44.23  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      .++|-|.|+ |.+|+.++..|.+.||+|+++|+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            467888887 99999999999999999999986

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.084  Score=37.13  Aligned_cols=37  Identities=22%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CCCcEEEEECCCh-----------hHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            3 EKMKVMGVVGSGQ-----------MGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         3 ~~~~~I~viG~G~-----------mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +..+||.|||+|.           .+...+..|.+.|+++++++.||+
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            4578999999985           577788889999999999999997

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.062  Score=41.94  Aligned_cols=39  Identities=10%  Similarity=-0.186  Sum_probs=33.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      -.+|-.+|+|. | ..+..|++.|++|+.+|.+++.++.++
T Consensus        46 ~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~   84 (229)
T d2bzga1          46 GLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFF   84 (229)
T ss_dssp             SCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHH
Confidence            35899999998 4 668889999999999999999887764

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.37  E-value=0.69  Score=35.76  Aligned_cols=93  Identities=15%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCcccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKDL-   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-   82 (297)
                      .++|.=||+|. | .++..|++.|++|+++|.+++.++.+++...       +.+.           ++.+ ..+.+.+ 
T Consensus        42 ~~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~-------~~~~-----------~i~~~~~d~~~l~  101 (251)
T d1wzna1          42 VRRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAK-------ERNL-----------KIEFLQGDVLEIA  101 (251)
T ss_dssp             CCEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTC-----------CCEEEESCGGGCC
T ss_pred             CCEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccc-------cccc-----------cchheehhhhhcc
Confidence            35799999997 4 4456788999999999999998887755432       1221           1122 2333321 


Q ss_pred             --CCCcEEEEec--c--ccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           83 --HSADIIVEAI--V--ESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 --~~aD~Vi~~v--~--e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ...|+|+.+-  -  -+..-.+..++++.+.++++.+++
T Consensus       102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence              3468877542  0  112224577888989888877554

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.069  Score=44.09  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC-cEEEEeCCHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL-DVWLVDTDPDA   40 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~-~V~~~d~~~~~   40 (297)
                      |||.|.|+ |.+|+.++..|++.|+ +|+++|+....
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~   37 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA   37 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc
Confidence            47999988 9999999999999995 89999986543

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.34  E-value=0.066  Score=43.82  Aligned_cols=30  Identities=27%  Similarity=0.592  Sum_probs=27.7

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      ||-|.|+ |.+|+.++..|++.||+|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7888887 99999999999999999999984

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.34  E-value=0.049  Score=41.91  Aligned_cols=30  Identities=27%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|..-|..+++.|.+|.++|..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999964

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.32  E-value=0.06  Score=45.19  Aligned_cols=30  Identities=27%  Similarity=0.240  Sum_probs=28.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      +.|||+|.-|+-+|.+|+++|++|.++++-
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            679999999999999999999999999875

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.25  E-value=0.071  Score=42.36  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      +.|||+|.-|...|..+++.|.+|.++|.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            679999999999999999999999999975

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.24  E-value=0.056  Score=42.83  Aligned_cols=40  Identities=10%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHH---HCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGV---MDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~---~~G~~V~~~d~~~~~~~~~   44 (297)
                      |++|-|-|+ .-+|.++|..|+   +.|+.|++.+|++++++.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~   45 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   45 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            568988888 789999999886   5799999999999877654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.16  E-value=0.089  Score=41.66  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             EEE-EECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434            7 VMG-VVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         7 ~I~-viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      |++ |.|+ +.+|.++|..|++.|++|++.|++++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            455 4566 789999999999999999999998753

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.11  E-value=0.044  Score=39.22  Aligned_cols=95  Identities=18%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             CcEEEEECCC----------hhHHHHHHHHHHCCCcEEEEeCCHHHHHHH---HHHHHHHHHHHHHcCCCChhhhcccCC
Q 022434            5 MKVMGVVGSG----------QMGSGIAQLGVMDGLDVWLVDTDPDALVRA---TKSISSSIQKFVSKGQLSQAVGTDAPR   71 (297)
Q Consensus         5 ~~~I~viG~G----------~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~   71 (297)
                      .++|+|+|+-          .-...++..|...|++|.+||+.-+..+..   .+.+.+....                .
T Consensus        13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~----------------~   76 (136)
T d1mv8a3          13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPH----------------V   76 (136)
T ss_dssp             CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHH----------------H
T ss_pred             CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhcccc----------------c
Confidence            4789999983          467788999999999999999743221100   0000000000                0


Q ss_pred             CcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .....+++++ ++++|+||.+++.+.      |.++......+.+|.....
T Consensus        77 ~~~~~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~  121 (136)
T d1mv8a3          77 SSLLVSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVG  121 (136)
T ss_dssp             HTTBCSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSS
T ss_pred             cceeehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCC
Confidence            0123456655 889999999997653      2334444445555554443

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.16  Score=32.27  Aligned_cols=40  Identities=23%  Similarity=0.118  Sum_probs=34.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|.|+ |.+|....+.+...|++|+....++++.+.+
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            457888877 9999999998899999999999999888766

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.83  E-value=0.055  Score=44.47  Aligned_cols=31  Identities=32%  Similarity=0.391  Sum_probs=29.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -|.|||+|.-|..-|..+++.|.+|++++..
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899999999999999999999999999875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.61  Score=34.54  Aligned_cols=38  Identities=24%  Similarity=0.160  Sum_probs=32.5

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +|.|.|+ |.+|....+.....|.+|+...+++++.+.+
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             cEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            6777766 9999888888888999999999999987665

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.62  E-value=0.058  Score=44.18  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             cEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~   38 (297)
                      ..|.|||+|.-|..-|..|++  .|++|+++|+++
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            359999999999999999996  499999999875

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.60  E-value=0.025  Score=40.11  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=26.7

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEE-EEeCCHH
Q 022434            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVW-LVDTDPD   39 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~-~~G~~V~-~~d~~~~   39 (297)
                      .+|.|+|+|.+|..++..+. ..||+++ ++|-+++
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            48999999999999998654 3567766 5687775

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.056  Score=44.08  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=29.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .+||.|.|+ |.+|+.++..|++.|+.|++.+..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            368999988 999999999999999999988654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.1  Score=43.57  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=26.7

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|-|.|+ |.+|+.++..|++.||+|+++|+...
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~   36 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            3447785 99999999999999999999998654

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=0.11  Score=43.09  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=27.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +.|.|.|+ |.+|+.++..|++.||+|+++|+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            34777877 99999999999999999999985

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.25  E-value=0.19  Score=41.04  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=27.3

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |++|| |+ +.+|.++|..|++.|++|++.|++.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            44555 76 78999999999999999999987643

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.02  E-value=0.18  Score=40.69  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=31.8

Q ss_pred             CcEEEEECCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434            5 MKVMGVVGSG---QMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         5 ~~~I~viG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      -+++-|.|++   -+|.++|..|++.|.+|++.++++....
T Consensus         8 gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~   48 (297)
T d1d7oa_           8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI   48 (297)
T ss_dssp             TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhh
Confidence            4677777985   5999999999999999999999876443

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.96  E-value=1.6  Score=31.65  Aligned_cols=70  Identities=14%  Similarity=0.187  Sum_probs=46.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCC-----HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTD-----PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      -.+|++||- .++..+++..+..-|.+|++..+.     ++..+.+.+..       ..           ....+..+.+
T Consensus         4 gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~-------~~-----------~~~~~~~~~d   65 (163)
T d1pvva2           4 GVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA-------AE-----------SGGSFELLHD   65 (163)
T ss_dssp             TCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH-------HH-----------HTCEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh-------hc-----------ccceEEEecC
Confidence            468999998 457788888889999999999653     33333221110       11           1133467778


Q ss_pred             ccc-cCCCcEEEEec
Q 022434           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      ..+ ++++|+|..-.
T Consensus        66 ~~ea~~~adviy~~~   80 (163)
T d1pvva2          66 PVKAVKDADVIYTDV   80 (163)
T ss_dssp             HHHHTTTCSEEEECC
T ss_pred             HHHHhhhccEEeecc
Confidence            766 89999998653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.89  E-value=0.1  Score=41.44  Aligned_cols=37  Identities=19%  Similarity=-0.107  Sum_probs=31.2

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         8 I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .-|-|+ +.+|.++|..|++.|++|.+.|++.++++++
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~   40 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL   40 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            345576 6699999999999999999999998877655

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.88  E-value=0.53  Score=35.18  Aligned_cols=69  Identities=19%  Similarity=0.357  Sum_probs=48.5

Q ss_pred             cEEEEECCC--hhHHHHHHHHHHCCCcEEEEeCC-----HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434            6 KVMGVVGSG--QMGSGIAQLGVMDGLDVWLVDTD-----PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN   78 (297)
Q Consensus         6 ~~I~viG~G--~mG~~iA~~l~~~G~~V~~~d~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+|++||=|  ++..+++..++.-|.++++..+.     ++-++.+.+.       ..+.|           ..+.++++
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~-------~~~~~-----------~~~~~~~d   67 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKF-------AEESG-----------AKLTLTED   67 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHH-------HHHHT-----------CEEEEESC
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHH-------hhccC-----------CeEEEEeC
Confidence            489999954  89999999999999999999874     2323322111       11122           34567888


Q ss_pred             ccc-cCCCcEEEEec
Q 022434           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      +++ ++++|+|....
T Consensus        68 ~~eai~~aDvVyt~~   82 (185)
T d1dxha2          68 PKEAVKGVDFVHTDV   82 (185)
T ss_dssp             HHHHTTTCSEEEECC
T ss_pred             hhhccccccEEEeeh
Confidence            876 99999998755

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=90.80  E-value=0.067  Score=44.00  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -|.|||+|.-|..-|..++++|.+|++++..+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            39999999999999999999999999998743

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.55  E-value=0.92  Score=33.71  Aligned_cols=38  Identities=21%  Similarity=0.188  Sum_probs=28.4

Q ss_pred             cEEEEE--CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            6 KVMGVV--GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~vi--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      .+|.|+  |.|.+|....+.....|.+|+..-++++..+.
T Consensus        30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~   69 (189)
T d1gu7a2          30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE   69 (189)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHH
T ss_pred             CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccch
Confidence            468888  56888888888888889999887666554443

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.34  E-value=0.73  Score=37.06  Aligned_cols=30  Identities=23%  Similarity=0.169  Sum_probs=27.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEe
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      ++|+|=|.|++|...|..|.+.|..|+.++
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            689999999999999999999999987664

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.18  E-value=0.11  Score=39.78  Aligned_cols=31  Identities=13%  Similarity=0.095  Sum_probs=26.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEe
Q 022434            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      .+||.|+|+ |.+|+.++..|.+.|+.+.+..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~   33 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIA   33 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEE
Confidence            379999999 9999999999999998544443

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.1  Score=43.07  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             CCCCCcE--EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            1 MEEKMKV--MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~--I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |+-++++  |.|||+|.-|..-|..++++|.+|++++..
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             CCCCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CCCCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5444433  889999999999999999999999999763

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.08  E-value=0.76  Score=35.09  Aligned_cols=97  Identities=7%  Similarity=0.107  Sum_probs=56.6

Q ss_pred             CcEEEEECCChhH--HHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc
Q 022434            5 MKVMGVVGSGQMG--SGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~mG--~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   81 (297)
                      -.+|.=||+|.-.  ..++..+...|.+|+.+|.+++-++.+++.+.       +.+.         ..++.. ..+..+
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-------~~~~---------~~~~~~~~~d~~~  103 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-------AYHS---------EIPVEILCNDIRH  103 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-------TSCC---------SSCEEEECSCTTT
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-------hhcc---------cchhhhccchhhc
Confidence            4589999996543  34444444568899999999998888755432       1111         112222 223322


Q ss_pred             --cCCCcEEEEeccc---cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 --LHSADIIVEAIVE---SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 --~~~aD~Vi~~v~e---~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ....|+++.+..-   +.+-...+++++.+.++++..++
T Consensus       104 ~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  144 (225)
T d1im8a_         104 VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLV  144 (225)
T ss_dssp             CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceee
Confidence              3456766654210   11124578888888888876544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.98  E-value=0.14  Score=40.98  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             CcEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc
Q 022434            5 MKVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~--G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   81 (297)
                      -++|.=+|+  |.+...+|..+...| +|+.+|.+++.++.+++.++...    . +         ...++.+ ..|..+
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~----~-~---------~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCY----G-Q---------PPDNWRLVVSDLAD  161 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHH----T-S---------CCTTEEEECSCGGG
T ss_pred             CCEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhc----c-C---------CCceEEEEeccccc
Confidence            457777777  455555555554444 69999999999888766554321    1 1         1122222 222221


Q ss_pred             ----cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434           82 ----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        82 ----~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                          -...|.||.-+|+..+    ++.++.+.++++..+++-+.+
T Consensus       162 ~~~~~~~fDaV~ldlp~P~~----~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         162 SELPDGSVDRAVLDMLAPWE----VLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             CCCCTTCEEEEEEESSCGGG----GHHHHHHHEEEEEEEEEEESS
T ss_pred             ccccCCCcceEEEecCCHHH----HHHHHHhccCCCCEEEEEeCc
Confidence                2357999999998764    456666777787766644433

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.94  E-value=0.12  Score=40.86  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~   44 (297)
                      ++|.|-|+ +-+|.++|..|++.|+  .|++..|++++++.+
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l   45 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL   45 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHH
Confidence            56777787 8899999999999996  577779998876554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=89.94  E-value=0.57  Score=35.79  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCcccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      +-++|.=||+|. | ..+..+++.|.+|+.+|.+++.++.+++.+.       +.+.          .++.+ ..+.+++
T Consensus        15 ~~~rVLDiGcG~-G-~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~-------~~~~----------~~i~~~~~d~~~l   75 (231)
T d1vl5a_          15 GNEEVLDVATGG-G-HVANAFAPFVKKVVAFDLTEDILKVARAFIE-------GNGH----------QQVEYVQGDAEQM   75 (231)
T ss_dssp             SCCEEEEETCTT-C-HHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-------HTTC----------CSEEEEECCC-CC
T ss_pred             CcCEEEEecccC-c-HHHHHHHHhCCEEEEEECCHHHHhhhhhccc-------cccc----------ccccccccccccc
Confidence            346899999995 3 3345678889999999999998877654432       2221          23332 2333322


Q ss_pred             ----CCCcEEEEec-cccHHHHHHHHHHHHhhcCCCeEE
Q 022434           83 ----HSADIIVEAI-VESEDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        83 ----~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii  116 (297)
                          ...|+|+..- .+...-...+++++.+.++++..+
T Consensus        76 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l  114 (231)
T d1vl5a_          76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQL  114 (231)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHhcCCCcEE
Confidence                3468887542 111111446788888888887643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.92  E-value=0.49  Score=34.72  Aligned_cols=39  Identities=21%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|-|+ |.+|....+.....|.+|+...+++++.+.+
T Consensus        25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~   64 (167)
T d1tt7a2          25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL   64 (167)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence            35888885 9999999888888999999999998887766

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.64  E-value=0.33  Score=39.31  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||+|.-|  ++..++++  .-+|+++|.|++-++.+++.+....      +.+       ...|+.+. .|..
T Consensus        89 ~pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~------~~~-------~d~rv~v~~~Da~  153 (295)
T d1inla_          89 NPKKVLIIGGGDGG--TLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS------CGF-------DDPRAEIVIANGA  153 (295)
T ss_dssp             SCCEEEEEECTTCH--HHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH------GGG-------GCTTEEEEESCHH
T ss_pred             CCceEEEecCCchH--HHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc------ccc-------cCCCcEEEhhhHH
Confidence            45799999998643  45555554  2479999999998887765433211      110       01233332 2221


Q ss_pred             c-c----CCCcEEEEeccccHH------HHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           81 D-L----HSADIIVEAIVESED------VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~-~----~~aD~Vi~~v~e~~~------~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      . +    +.-|+||.-.++...      ...+.++.+.+.++++.+++.++.+.
T Consensus       154 ~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         154 EYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             HHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            1 2    346999976655321      13467788888999999888776553

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.64  E-value=0.18  Score=42.31  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=27.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDT   36 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~-~G~~V~~~d~   36 (297)
                      |||-|.|+ |.+|+.++..|++ .||+|+++|.
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            58999987 9999999999875 8999999983

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=89.31  E-value=0.19  Score=39.84  Aligned_cols=80  Identities=18%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -+||++||.  +  +....+.+.|.++.++|+++..                  |.             ......+. +.
T Consensus       122 g~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~------------------gd-------------~p~~~~~~lLp  166 (251)
T d2h1qa1         122 GKKVGVVGH--F--PHLESLLEPICDLSILEWSPEE------------------GD-------------YPLPASEFILP  166 (251)
T ss_dssp             TSEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT------------------TC-------------EEGGGHHHHGG
T ss_pred             CCEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC------------------CC-------------CCchHHHHhhh
Confidence            479999975  4  5666678889999999998741                  11             11122233 78


Q ss_pred             CCcEEEEeccccHHHHHHHHHHHHhhcCCC-eEEEecCCC
Q 022434           84 SADIIVEAIVESEDVKKKLFSELDKITKAS-AILASNTSS  122 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~-~ii~s~ts~  122 (297)
                      +||+||.+-   ..+....+..|-+++++. .++....|+
T Consensus       167 ~aD~viiTG---sTlvN~Tl~~LL~~~~~a~~vvl~GPS~  203 (251)
T d2h1qa1         167 ECDYVYITC---ASVVDKTLPRLLELSRNARRITLVGPGT  203 (251)
T ss_dssp             GCSEEEEET---HHHHHTCHHHHHHHTTTSSEEEEESTTC
T ss_pred             cCCEEEEEe---chhhcCCHHHHHHhCCcCCEEEEECCCc
Confidence            999999876   344556677777778765 455555554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.31  E-value=0.23  Score=40.22  Aligned_cols=105  Identities=12%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCc-
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNL-   79 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-   79 (297)
                      ..++|.|||.|.-+  ++..+++. + -+|+++|.|++-++.+++....... ..            ...|++. ..|. 
T Consensus        80 ~pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~------------~~~r~~i~~~Da~  144 (290)
T d1xj5a_          80 NPKKVLVIGGGDGG--VLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI-GY------------EDPRVNLVIGDGV  144 (290)
T ss_dssp             CCCEEEEETCSSSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GG------------GSTTEEEEESCHH
T ss_pred             CCcceEEecCCchH--HHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc-cc------------cCCCcEEEEccHH
Confidence            45799999999754  44455554 4 3799999999998887655432111 00            1122222 2221 


Q ss_pred             ---ccc--CCCcEEEEeccccHH-----HHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           80 ---KDL--HSADIIVEAIVESED-----VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        80 ---~~~--~~aD~Vi~~v~e~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                         ...  +.-|+||.-.++...     ...+.++.+.+.++++.+++.++.+.
T Consensus       145 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         145 AFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             HHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence               111  247999876654321     23467888999999999988776554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.09  E-value=0.16  Score=41.71  Aligned_cols=104  Identities=12%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||+|.-+  ++..+++.  ..+|+++|.+++-++.+++.+...     ..+.+       ...|+.+. .|.-
T Consensus        77 ~pk~VLiiG~G~G~--~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~-----~~~~~-------~d~rv~i~~~Da~  142 (312)
T d1uira_          77 EPKRVLIVGGGEGA--TLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW-----HQGAF-------DDPRAVLVIDDAR  142 (312)
T ss_dssp             CCCEEEEEECTTSH--HHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHH-----HTTGG-------GCTTEEEEESCHH
T ss_pred             CcceEEEeCCCchH--HHHHHHhcCCcceEEEecCCHHHHHHHHhcCccc-----ccCcc-------CCCceEEEEchHH
Confidence            45799999999643  33444443  358999999999888775543221     11111       11233332 2321


Q ss_pred             c-----cCCCcEEEEeccccH--------HHHHHHHHHHHhhcCCCeEEEecCC
Q 022434           81 D-----LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        81 ~-----~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .     -+.-|+||.-.++..        -...+.++.+.+.++++.+++.+++
T Consensus       143 ~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         143 AYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             HHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            1     135799987664321        0134677888888888888876653

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.08  E-value=0.16  Score=42.29  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcE-EEEeC
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDV-WLVDT   36 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V-~~~d~   36 (297)
                      |||.|.|+ |.+|+.++..|++.|++| .++|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            48999987 999999999999999985 45664

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.03  E-value=0.29  Score=40.22  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             cEEEEE-CCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434            6 KVMGVV-GSG---QMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~I~vi-G~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      .||++| |+|   -+|.+||..|++.|.+|.+.+++......
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~   43 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIF   43 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhh
Confidence            367766 865   69999999999999999999988765443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=89.01  E-value=0.62  Score=35.80  Aligned_cols=91  Identities=21%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL--   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--   82 (297)
                      -.+|.=||+|.  ..++..|++.|++|+.+|.+++.++.+++           .+.-          . ....+.+++  
T Consensus        43 ~~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~-----------~~~~----------~-~~~~~~~~l~~   98 (246)
T d2avna1          43 PCRVLDLGGGT--GKWSLFLQERGFEVVLVDPSKEMLEVARE-----------KGVK----------N-VVEAKAEDLPF   98 (246)
T ss_dssp             CCEEEEETCTT--CHHHHHHHTTTCEEEEEESCHHHHHHHHH-----------HTCS----------C-EEECCTTSCCS
T ss_pred             CCEEEEECCCC--chhcccccccceEEEEeeccccccccccc-----------cccc----------c-ccccccccccc
Confidence            35788899985  34556788899999999999998877632           2210          1 112233222  


Q ss_pred             --CCCcEEEEe--ccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           83 --HSADIIVEA--IVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 --~~aD~Vi~~--v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                        ..-|+|+..  +-+-..-...+++++.+.++++.+++.+
T Consensus        99 ~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1          99 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence              345887753  2110001235778888888887765543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=88.95  E-value=0.18  Score=40.47  Aligned_cols=104  Identities=21%  Similarity=0.268  Sum_probs=63.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||.|.-+  ++..+++. + -+|+++|.|++-++.+++.....      .+...       ..|+... .|.-
T Consensus        75 ~p~~vLiiGgG~G~--~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~------~~~~~-------d~r~~i~~~D~~  139 (274)
T d1iy9a_          75 NPEHVLVVGGGDGG--VIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI------AGKLD-------DPRVDVQVDDGF  139 (274)
T ss_dssp             SCCEEEEESCTTCH--HHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH------HTTTT-------STTEEEEESCSH
T ss_pred             CcceEEecCCCCcH--HHHHHHhcCCcceEEEecCCHHHHHHHHHhChhh------ccccc-------CCCeEEEechHH
Confidence            35799999998643  44444543 3 58999999999888775543211      12211       1233332 2221


Q ss_pred             c-c----CCCcEEEEeccccHH-----HHHHHHHHHHhhcCCCeEEEecCCC
Q 022434           81 D-L----HSADIIVEAIVESED-----VKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        81 ~-~----~~aD~Vi~~v~e~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      . +    +.-|+||.-.+++..     ..++.++.+.+.++++.+++.++.+
T Consensus       140 ~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         140 MHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             HHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            1 2    347999876654321     1446788888899999988877654

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=0.5  Score=35.91  Aligned_cols=29  Identities=14%  Similarity=0.046  Sum_probs=26.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEE
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV   34 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~   34 (297)
                      |||.|+|.+.+|......|.++|++|..+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~V   29 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAI   29 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEE
Confidence            58999999999999999999999999754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.54  E-value=0.17  Score=39.34  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=27.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC---CcEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG---LDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G---~~V~~~d~~   37 (297)
                      ++||.|||+|.-|..-|..+++.|   ++|.++|.+
T Consensus         1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            368999999999999888777655   679999975

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=88.49  E-value=0.21  Score=39.42  Aligned_cols=31  Identities=23%  Similarity=0.121  Sum_probs=29.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +.|||+|.-|...|..+++.|.+|++++..+
T Consensus        45 vvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            8899999999999999999999999999764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.33  E-value=0.24  Score=39.96  Aligned_cols=104  Identities=13%  Similarity=0.175  Sum_probs=61.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||+|.-  .++..+.+.  .-+|+++|.+++-++.+++......      +..       ...|+.+. .|.-
T Consensus        78 ~pk~vLiiGgG~G--~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~------~~~-------~d~rv~i~~~Da~  142 (285)
T d2o07a1          78 NPRKVLIIGGGDG--GVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA------IGY-------SSSKLTLHVGDGF  142 (285)
T ss_dssp             SCCEEEEEECTTS--HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------GGG-------GCTTEEEEESCHH
T ss_pred             CcCeEEEeCCCch--HHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc------ccc-------CCCCceEEEccHH
Confidence            3578999999964  345555554  3589999999998888765543211      100       11233332 2311


Q ss_pred             c-----cCCCcEEEEeccccHHH-----HHHHHHHHHhhcCCCeEEEecCCC
Q 022434           81 D-----LHSADIIVEAIVESEDV-----KKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        81 ~-----~~~aD~Vi~~v~e~~~~-----k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      .     -+.-|+||.-.+++...     ..+.++.+.+.++++.+++.++.+
T Consensus       143 ~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         143 EFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             HHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            1     23469999776554321     335577788888998888876544

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.93  E-value=0.32  Score=35.28  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=27.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~   37 (297)
                      ++|.|||.|..|.-.|..+.+.|.+ |+++.|.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            6899999999999999999999865 7777654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.81  E-value=0.31  Score=36.10  Aligned_cols=32  Identities=31%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCC
Q 022434            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ++|.|||-+ .+|+++|..|++.|..|+..+.+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            789999976 45999999999999999999865

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.78  E-value=1.1  Score=34.66  Aligned_cols=93  Identities=18%  Similarity=0.261  Sum_probs=59.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc---
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD---   81 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---   81 (297)
                      ++|.=||+|. | .++..|++.|.+|+.+|.|++.++.++++..       ..|.           ++.+ ..|..+   
T Consensus        39 ~~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~-------~~~~-----------~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          39 DDYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFR-------SQGL-----------KPRLACQDISNLNI   98 (246)
T ss_dssp             TEEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHH-------HTTC-----------CCEEECCCGGGCCC
T ss_pred             CeEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhcccccc-------ccCc-----------cceeeccchhhhcc
Confidence            5799999985 2 3666788899999999999998887755432       2221           1222 233332   


Q ss_pred             cCCCcEEEEec-----cccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434           82 LHSADIIVEAI-----VESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        82 ~~~aD~Vi~~v-----~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      -+..|+|+...     -...+-...+++++.+.++++.+++.
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            23469888531     11233355788999999888776553

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.68  E-value=0.17  Score=34.24  Aligned_cols=34  Identities=9%  Similarity=-0.109  Sum_probs=28.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -++|.|||+|.-|..+|..|+..+-+|++..+..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4789999999999999999998887776665543

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=0.2  Score=44.27  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|..|+-++..|+.+|. +++++|.+.
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            589999999999999999999996 799998753

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.54  E-value=2  Score=31.75  Aligned_cols=95  Identities=14%  Similarity=0.116  Sum_probs=57.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecC-cccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSN-LKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~-~~~~   82 (297)
                      .++|.=||+|.=.  ++..+++.+.+|+++|.++..++.+++.++       ..+. .       ..++.+ ..| .+.+
T Consensus        53 ~~~VLDiGcG~G~--~~~~la~~~~~v~~iD~s~~~i~~a~~n~~-------~~~l-~-------~~~i~~~~~d~~~~~  115 (194)
T d1dusa_          53 DDDILDLGCGYGV--IGIALADEVKSTTMADINRRAIKLAKENIK-------LNNL-D-------NYDIRVVHSDLYENV  115 (194)
T ss_dssp             TCEEEEETCTTSH--HHHHHGGGSSEEEEEESCHHHHHHHHHHHH-------HTTC-T-------TSCEEEEECSTTTTC
T ss_pred             CCeEEEEeecCCh--hHHHHHhhccccceeeeccccchhHHHHHH-------HhCC-c-------cceEEEEEcchhhhh
Confidence            4689899998743  344567788899999999998887754432       1121 0       012232 223 2223


Q ss_pred             --CCCcEEEEeccc--cHHHHHHHHHHHHhhcCCCeEE
Q 022434           83 --HSADIIVEAIVE--SEDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        83 --~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii  116 (297)
                        +..|+|+...|-  ..+....+++++.+.++++.++
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEE
Confidence              357999875542  2333456777888888877543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.44  E-value=0.18  Score=40.54  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=30.2

Q ss_pred             CcEEEEECCChhHHH-----HHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSG-----IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~-----iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |++|+|-|=|-+|..     +|..|++.|++|.++|.|++
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            578999898888876     57789999999999999875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=87.22  E-value=0.3  Score=38.43  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCc-EEEEeCCHHHH
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLD-VWLVDTDPDAL   41 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~-V~~~d~~~~~~   41 (297)
                      .+|-|.|+ |.+|..+|..|++.|+. |+++.|+....
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~   47 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA   47 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCH
Confidence            46778886 89999999999999995 88888875443

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.10  E-value=0.93  Score=32.81  Aligned_cols=71  Identities=15%  Similarity=0.227  Sum_probs=49.2

Q ss_pred             CcEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCH-----HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434            5 MKVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDP-----DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~I~viG~--G~mG~~iA~~l~~~G~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      -.+|++||=  .++-.++...+..-|+++++..+..     +..+.+.+.       ..+.           ...+..++
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~-------~~~~-----------~~~i~~~~   64 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEI-------VKET-----------DGSVSFTS   64 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHH-------HHHH-----------CCEEEEES
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHH-------Hhhc-----------CCceEEEe
Confidence            368999994  5789999999999999999987643     222221110       1111           24567888


Q ss_pred             Cccc-cCCCcEEEEecc
Q 022434           78 NLKD-LHSADIIVEAIV   93 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~   93 (297)
                      ++++ ++++|+|....-
T Consensus        65 d~~~ai~~aDviyt~~~   81 (161)
T d1vlva2          65 NLEEALAGADVVYTDVW   81 (161)
T ss_dssp             CHHHHHTTCSEEEECCC
T ss_pred             cHHHhhhhhhheeccce
Confidence            8876 899999997653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=87.08  E-value=0.26  Score=41.61  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=28.1

Q ss_pred             EEEECCChhHHHHHHHHHHCC-CcEEEEeCCH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDP   38 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~   38 (297)
                      +-|||+|.-|+.+|.+|+++| ++|.++++-+
T Consensus        27 ~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          27 YIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            679999999999999999998 7999998654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=86.83  E-value=0.63  Score=36.72  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=26.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEE
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLV   34 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~   34 (297)
                      -++|+|=|.|++|...|..|.+.|..|+.+
T Consensus        36 g~~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          36 GKTVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             TCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            368999999999999999999999988743

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=86.31  E-value=0.12  Score=42.28  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=23.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEE
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVW   32 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~   32 (297)
                      |||.|.|+ |.+|+.++..|++.||+|.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~   28 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV   28 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence            48999987 9999999999999998654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.30  E-value=4  Score=34.17  Aligned_cols=107  Identities=14%  Similarity=0.044  Sum_probs=60.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC-----
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN-----   78 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-----   78 (297)
                      -.+|.=||+|.=...+ ...+..|. +|+.+|.++..++.+++..+..-......|.-...      ..+....+     
T Consensus       217 gd~fLDLGCG~G~~vl-~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~------~~~~~~~~f~~~~  289 (406)
T d1u2za_         217 GDTFMDLGSGVGNCVV-QAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN------VEFSLKKSFVDNN  289 (406)
T ss_dssp             TCEEEEESCTTSHHHH-HHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC------EEEEESSCSTTCH
T ss_pred             CCEEEeCCCCCcHHHH-HHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc------ceeeeeechhhcc
Confidence            3567788998633333 33344454 79999999999988877766544333322221000      00111111     


Q ss_pred             -cc-ccCCCcEEEEec-cccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           79 -LK-DLHSADIIVEAI-VESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        79 -~~-~~~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       .. .+..||+|+..- .-..+ ....+.++...+++++.|++.
T Consensus       290 ~~d~~~~~adVV~inn~~f~~~-l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         290 RVAELIPQCDVILVNNFLFDED-LNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHHHHGGGCSEEEECCTTCCHH-HHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccccccceEEEEecccCchH-HHHHHHHHHHhcCCCcEEEEe
Confidence             11 256788888532 22233 345667777888898877654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=86.11  E-value=0.36  Score=37.56  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |-|||+|.-|..-|..+++.|.++.++..+.
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            7799999999999999999999999998764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.02  E-value=3  Score=32.45  Aligned_cols=108  Identities=14%  Similarity=0.121  Sum_probs=62.5

Q ss_pred             CCcEEEEECCChhHHHH--HHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCcc
Q 022434            4 KMKVMGVVGSGQMGSGI--AQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~i--A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      +-++|.=+|+|.=+.++  |..+. .+-.|+.+|++++.++.+++.+++       .+.         ..++.+. .|..
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~-~~g~V~~vD~~e~~~~~A~~n~~~-------~~~---------~~nv~~~~~Di~  147 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSE-------FYD---------IGNVRTSRSDIA  147 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHT-------TSC---------CTTEEEECSCTT
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHH-------hcC---------CCceEEEEeeee
Confidence            34689889987654433  33322 234899999999988877554321       111         1233332 3333


Q ss_pred             c-c--CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-HHHHhhhc
Q 022434           81 D-L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-ITRLASAT  132 (297)
Q Consensus        81 ~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~~l~~~~  132 (297)
                      + +  ...|.|+.-+|+...    ++.++.+.++++.++++...++. .+++.+.+
T Consensus       148 ~~~~~~~fD~V~ld~p~p~~----~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l  199 (250)
T d1yb2a1         148 DFISDQMYDAVIADIPDPWN----HVQKIASMMKPGSVATFYLPNFDQSEKTVLSL  199 (250)
T ss_dssp             TCCCSCCEEEEEECCSCGGG----SHHHHHHTEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred             cccccceeeeeeecCCchHH----HHHHHHHhcCCCceEEEEeCCcChHHHHHHHH
Confidence            3 2  347999998887664    46666677777776664433322 33444444

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=85.98  E-value=1.1  Score=36.23  Aligned_cols=32  Identities=31%  Similarity=0.595  Sum_probs=25.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHC----CC-------cEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD----GL-------DVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~----G~-------~V~~~d~~   37 (297)
                      .||.|+|+|.-|.++|..+...    |.       +++++|+.
T Consensus        26 ~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          26 EKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            5799999999999999887653    32       48888865

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=85.92  E-value=0.35  Score=38.46  Aligned_cols=28  Identities=36%  Similarity=0.546  Sum_probs=24.8

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCC-cEEEEe
Q 022434            8 MGVVGS-GQMGSGIAQLGVMDGL-DVWLVD   35 (297)
Q Consensus         8 I~viG~-G~mG~~iA~~l~~~G~-~V~~~d   35 (297)
                      |.|.|+ |.+|+.++..|++.|+ +|+++|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            667776 9999999999999995 799987

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=85.89  E-value=0.56  Score=33.79  Aligned_cols=61  Identities=10%  Similarity=0.085  Sum_probs=44.2

Q ss_pred             CcEEEEECC---ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGS---GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~---G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      -.+|++||=   +++..+++..+..-|.++++..+..-..+                           ...+....+.++
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---------------------------~~~~~~~~~~~e   55 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---------------------------ENTFGTYVSMDE   55 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---------------------------ccceeEEEechh
Confidence            358999998   57999999999999999998876532110                           012345566655


Q ss_pred             -cCCCcEEEEec
Q 022434           82 -LHSADIIVEAI   92 (297)
Q Consensus        82 -~~~aD~Vi~~v   92 (297)
                       ++++|+|....
T Consensus        56 a~~~aDviy~~r   67 (151)
T d2at2a2          56 AVESSDVVMLLR   67 (151)
T ss_pred             ccccCceeeeeE
Confidence             89999987654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.73  E-value=0.24  Score=39.20  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=29.4

Q ss_pred             CcEEEEECCChhHHH-----HHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSG-----IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~-----iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |++|+|.|=|-.|..     +|..|++.|++|.++|.|++
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            478999998888865     46678999999999999875

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.60  E-value=0.64  Score=37.85  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCcc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||.|.-|  ++..+++. + -+|+++|.+++-++.+++.+...      .+.       -...|+.+. .|.-
T Consensus       106 ~pk~VLIiGgG~G~--~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~------~~~-------~~dprv~i~i~Da~  170 (312)
T d2b2ca1         106 DPKRVLIIGGGDGG--ILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM------SCG-------FSHPKLDLFCGDGF  170 (312)
T ss_dssp             SCCEEEEESCTTSH--HHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT------SGG-------GGCTTEEEECSCHH
T ss_pred             CCCeEEEeCCCchH--HHHHHHHcCCcceEEEEcccHHHHHHHHhhchhh------ccc-------cCCCCeEEEEchHH
Confidence            45789999999644  44455554 3 47999999999888774432100      000       011333332 2211


Q ss_pred             c-----cCCCcEEEEeccccHH-----HHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434           81 D-----LHSADIIVEAIVESED-----VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~-----~~~aD~Vi~~v~e~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      .     -+.-|+||.-++++..     ..++.++.+.+.++++.++++++.+.
T Consensus       171 ~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         171 EFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             HHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            1     2346999976655432     23456777888899999988876544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.44  E-value=1.5  Score=35.83  Aligned_cols=105  Identities=11%  Similarity=0.035  Sum_probs=59.1

Q ss_pred             CcEEEEECCCh--hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc
Q 022434            5 MKVMGVVGSGQ--MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD   81 (297)
Q Consensus         5 ~~~I~viG~G~--mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~   81 (297)
                      -++|.=+|+|.  +-..+|..+... -.|+.+|++++.++.+++.+++........      ..+....++.+. .|...
T Consensus        99 G~rVLE~GtGsG~lt~~LAr~vg~~-G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~------~~~~~~~nv~~~~~di~~  171 (324)
T d2b25a1          99 GDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLS------HVEEWPDNVDFIHKDISG  171 (324)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTT------CSSCCCCCEEEEESCTTC
T ss_pred             CCEEEEecccccHHHHHHHHHhCCC-cEEEEecCCHHHHHHHHHHHHHhhhhhhhh------hhhccccceeEEecchhh
Confidence            45777777765  333333333333 379999999999988877666543221110      011223444432 23322


Q ss_pred             ----c--CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           82 ----L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        82 ----~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                          +  ...|.||.-+|+...    ++.++.+.++++..++.-+
T Consensus       172 ~~~~~~~~~fD~V~LD~p~P~~----~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         172 ATEDIKSLTFDAVALDMLNPHV----TLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             CC-------EEEEEECSSSTTT----THHHHGGGEEEEEEEEEEE
T ss_pred             cccccCCCCcceEeecCcCHHH----HHHHHHHhccCCCEEEEEe
Confidence                1  246888888887653    5667777888877666433

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.64  E-value=0.41  Score=39.29  Aligned_cols=30  Identities=33%  Similarity=0.509  Sum_probs=26.2

Q ss_pred             EEEECCChhHHHHHHHHHH----CCCcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVM----DGLDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~----~G~~V~~~d~~   37 (297)
                      |.|||+|.-|..-|..+++    +|.+|++++..
T Consensus        24 VlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            8999999999998888765    79999999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.60  E-value=4.5  Score=29.49  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCcc---
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLK---   80 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---   80 (297)
                      -.+|.=||+|.=..++  .++..+.+|+.+|.+++.++.+++.++       +.|.         ..++.+. .+..   
T Consensus        34 g~~VLDiGcGsG~~s~--~lA~~~~~V~avD~~~~~l~~a~~n~~-------~~gl---------~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          34 NDVAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQ-------RHGL---------GDNVTLMEGDAPEAL   95 (186)
T ss_dssp             TCEEEEESCTTSHHHH--HHHTTSSEEEEEESCHHHHHHHHHHHH-------HTTC---------CTTEEEEESCHHHHH
T ss_pred             CCEEEEEECCeEcccc--cccccceEEEEecCCHHHHHHHHHHHH-------HcCC---------CcceEEEECchhhcc
Confidence            4578888988754444  456777899999999999888765433       2222         1233332 2322   


Q ss_pred             -ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434           81 -DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        81 -~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       .....|.|+...+...  ...++..+.+.++++..++.+
T Consensus        96 ~~~~~~D~v~~~~~~~~--~~~~~~~~~~~LkpgG~lvi~  133 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSGGE--LQEILRIIKDKLKPGGRIIVT  133 (186)
T ss_dssp             TTSCCEEEEEESCCTTC--HHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCcCEEEEeCcccc--chHHHHHHHHHhCcCCEEEEE
Confidence             2456888887654321  346777777777777655433

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.27  E-value=0.45  Score=38.60  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=53.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-   81 (297)
                      -++|.-||+| .| .++..++++|. +|+.+|.++.... +.+.+       .+.+.         ..++.+. .+.++ 
T Consensus        36 ~~~VLDiGcG-~G-~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~-------~~~~~---------~~~i~~~~~~~~~l   96 (311)
T d2fyta1          36 DKVVLDVGCG-TG-ILSMFAAKAGAKKVLGVDQSEILYQ-AMDII-------RLNKL---------EDTITLIKGKIEEV   96 (311)
T ss_dssp             TCEEEEETCT-TS-HHHHHHHHTTCSEEEEEESSTHHHH-HHHHH-------HHTTC---------TTTEEEEESCTTTS
T ss_pred             cCEEEEECCC-CC-HHHHHHHHcCCCEEEEEeCHHHHHH-HHHHH-------HHhCC---------CccceEEEeeHHHh
Confidence            3679999999 44 36667888885 7999999976432 22111       22232         1233332 23332 


Q ss_pred             ---cCCCcEEEEecccc----HHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 ---LHSADIIVEAIVES----EDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ---~~~aD~Vi~~v~e~----~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                         ....|+|+......    ......++.....+++++..++
T Consensus        97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence               35689988643322    2234455555667777776554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.26  E-value=6.4  Score=30.93  Aligned_cols=97  Identities=15%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD   81 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   81 (297)
                      +-.+|.=||+|.=|  ++..+++ .|.+|+.+|.+++.++.++++++       +.|.         ..++.. ..+..+
T Consensus        52 ~g~~VLDiGCG~G~--~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~-------~~~l---------~~~~~~~~~d~~~  113 (280)
T d2fk8a1          52 PGMTLLDIGCGWGT--TMRRAVERFDVNVIGLTLSKNQHARCEQVLA-------SIDT---------NRSRQVLLQGWED  113 (280)
T ss_dssp             TTCEEEEESCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-------TSCC---------SSCEEEEESCGGG
T ss_pred             CCCEEEEecCCchH--HHHHHHHhCceeEEEecchHHHHHHHHHHHH-------hhcc---------ccchhhhhhhhhh
Confidence            34689999999744  4555554 48999999999999887765532       2232         122222 234444


Q ss_pred             c-CCCcEEEEec-cccH--HHHHHHHHHHHhhcCCCeEEEe
Q 022434           82 L-HSADIIVEAI-VESE--DVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        82 ~-~~aD~Vi~~v-~e~~--~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      . ..-|.|+..- .+..  .-...+++++...++|+-.++.
T Consensus       114 ~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence            3 3456664221 1211  1246789999999988776553

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=0.8  Score=36.60  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=25.1

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEe
Q 022434            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      +||.+| |+ +.+|.++|..|++.|.+|+.++
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~   33 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVY   33 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEE
Confidence            688887 65 8899999999999998866553

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.15  E-value=0.52  Score=36.34  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=29.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      -.||.|+|+|.-|.++|..+...|. +++++|+.
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            3689999999999999999988885 68899975

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=83.99  E-value=0.53  Score=34.65  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=27.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEe
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      +||+|=|.|.+|+.+.+.|...+++|+.++
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN   30 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIN   30 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence            489999999999999999999999998875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=83.83  E-value=4.1  Score=31.88  Aligned_cols=95  Identities=19%  Similarity=0.191  Sum_probs=56.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCcccc
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      -.+|.=||+|.=+  ++..|++ .|.+|+.+|.++..++.+++....       .|.         ..++.+ ..+..++
T Consensus        68 ~~~vLDiGcG~G~--~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~-------~gl---------~~~v~~~~~d~~~l  129 (282)
T d2o57a1          68 QAKGLDLGAGYGG--AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQ-------AGL---------ADNITVKYGSFLEI  129 (282)
T ss_dssp             TCEEEEETCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-------HTC---------TTTEEEEECCTTSC
T ss_pred             CCEEEEeCCCCcH--HHhhhhccCCcEEEEEeccchhhhhhhccccc-------ccc---------cccccccccccccc
Confidence            4689999998643  3444555 388999999999988877554332       221         123333 2333332


Q ss_pred             ----CCCcEEEEec-cccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           83 ----HSADIIVEAI-VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 ----~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                          ...|+|+..- .....-...+++++...++++..++
T Consensus       130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~  169 (282)
T d2o57a1         130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA  169 (282)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence                3468887532 1111114568888888888876543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=83.77  E-value=0.2  Score=39.90  Aligned_cols=29  Identities=21%  Similarity=0.107  Sum_probs=24.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEE
Q 022434            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLV   34 (297)
Q Consensus         6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~   34 (297)
                      |||.|.|+ |.+|+.++..|.+.|+.|.+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~   30 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALD   30 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence            57999997 999999999999998755543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=83.51  E-value=0.4  Score=40.19  Aligned_cols=30  Identities=17%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             EEEECCChhHHHHHHHHHHCC-CcEEEEeCC
Q 022434            8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTD   37 (297)
Q Consensus         8 I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~   37 (297)
                      +-|||+|.=|+.+|.+|++++ ++|.++++-
T Consensus        20 ~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG   50 (385)
T d1cf3a1          20 YIIAGGGLTGLTTAARLTENPNISVLVIESG   50 (385)
T ss_dssp             EEEECCSHHHHHHHHHHTTSTTCCEEEEESS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCeEEEECCC
Confidence            679999999999999999876 899999865

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.41  E-value=1.3  Score=33.19  Aligned_cols=93  Identities=19%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc--
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL--   82 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--   82 (297)
                      -.+|.=||+|. | .++..|++.|.+|+.+|.+++.++.+++...       ..+..         .. ....|...+  
T Consensus        38 ~~~ILDiGcG~-G-~~~~~la~~~~~v~giD~S~~~i~~ak~~~~-------~~~~~---------~~-~~~~d~~~l~~   98 (226)
T d1ve3a1          38 RGKVLDLACGV-G-GFSFLLEDYGFEVVGVDISEDMIRKAREYAK-------SRESN---------VE-FIVGDARKLSF   98 (226)
T ss_dssp             CCEEEEETCTT-S-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTCC---------CE-EEECCTTSCCS
T ss_pred             CCEEEEECCCc-c-hhhhhHhhhhcccccccccccchhhhhhhhc-------ccccc---------cc-ccccccccccc
Confidence            35799999997 3 3556788999999999999998887755432       22210         01 122333331  


Q ss_pred             --CCCcEEEEecc----ccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           83 --HSADIIVEAIV----ESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 --~~aD~Vi~~v~----e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ...|+|+..-.    ++.+ ...+++++.+.++++..++
T Consensus        99 ~~~~fD~I~~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~li  138 (226)
T d1ve3a1          99 EDKTFDYVIFIDSIVHFEPLE-LNQVFKEVRRVLKPSGKFI  138 (226)
T ss_dssp             CTTCEEEEEEESCGGGCCHHH-HHHHHHHHHHHEEEEEEEE
T ss_pred             cCcCceEEEEecchhhCChhH-HHHHHHHHHHHcCcCcEEE
Confidence              34577775321    1122 4468889999998876543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.17  E-value=2.5  Score=33.99  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-   81 (297)
                      -++|.-||+|. | .++..++++| .+|+.+|.++.. ..+.+.+       ...+.         ..++.+. .+..+ 
T Consensus        34 ~~~VLDiGcG~-G-~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~-------~~n~~---------~~~v~~~~~~~~~~   94 (316)
T d1oria_          34 DKVVLDVGSGT-G-ILCMFAAKAGARKVIGIECSSIS-DYAVKIV-------KANKL---------DHVVTIIKGKVEEV   94 (316)
T ss_dssp             TCEEEEETCTT-S-HHHHHHHHTTCSEEEEEECSTTH-HHHHHHH-------HHTTC---------TTTEEEEESCTTTC
T ss_pred             cCEEEEEecCC-c-HHHHHHHHhCCCEEEEEcCcHHH-hhhhhHH-------HHhCC---------ccccceEeccHHHc
Confidence            36788999997 4 4566788888 579999998753 3332221       12221         2334332 23322 


Q ss_pred             ---cCCCcEEEEeccc----cHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 ---LHSADIIVEAIVE----SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ---~~~aD~Vi~~v~e----~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                         ....|+|+.....    .......++..+...++++.+++
T Consensus        95 ~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          95 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence               2457888754322    12224567777888888877665

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=83.14  E-value=0.39  Score=39.75  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=27.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -+.|||+|.-|+.+|.+|+++ ++|.++++-.
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            368999999999999999987 9999998764

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=82.87  E-value=0.83  Score=33.91  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=47.6

Q ss_pred             cEEEEECCC--hhHHHHHHHHHHCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSG--QMGSGIAQLGVMDGLDVWLVDTDPDAL-VRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G--~mG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .+|++||=|  +|..+++..++.-|.+++++.+..-.. +...+.++..   ....|           ..+..+++.++ 
T Consensus         6 l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~---~~~~g-----------~~~~~~~d~~~a   71 (183)
T d1duvg2           6 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRAL---AQQNG-----------GNITLTEDVAKG   71 (183)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHH---HHHTT-----------CEEEEESCHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHH---HHhcC-----------CceEEEechhhc
Confidence            589999965  689999999999999999997642111 1111111111   12222           34467788876 


Q ss_pred             cCCCcEEEEec
Q 022434           82 LHSADIIVEAI   92 (297)
Q Consensus        82 ~~~aD~Vi~~v   92 (297)
                      ++++|+|...+
T Consensus        72 ~~~aDvvyt~~   82 (183)
T d1duvg2          72 VEGADFIYTDV   82 (183)
T ss_dssp             HTTCSEEEECC
T ss_pred             cccCCEEEEEe
Confidence            89999998755

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.21  E-value=0.57  Score=35.65  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=27.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc--EEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLD--VWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~--V~~~d~~   37 (297)
                      .++.|||+|..|..+|..|.+.|++  |+++++.
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            4678999999999999999988874  8888754

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.11  E-value=0.78  Score=34.92  Aligned_cols=30  Identities=23%  Similarity=0.143  Sum_probs=26.2

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeC
Q 022434            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDT   36 (297)
Q Consensus         7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~   36 (297)
                      -|.|||+|.-|...|..+++.|. .|.+.+.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            37899999999999999999886 6888875

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.11  E-value=11  Score=30.24  Aligned_cols=106  Identities=10%  Similarity=0.011  Sum_probs=62.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-   81 (297)
                      -.+|.=||+|.=...+ ......|. .|+.+|.+++.++.+.+..+..-.+....|.-        ..++.+ ..|... 
T Consensus       152 ~~~vlD~GcG~G~~~~-~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~--------~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         152 DDLFVDLGSGVGQVVL-QVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--------HAEYTLERGDFLSE  222 (328)
T ss_dssp             TCEEEEETCTTSHHHH-HHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC--------CCCEEEEECCTTSH
T ss_pred             CCEEEEcCCCCCHHHH-HHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc--------CCceEEEECccccc
Confidence            3578889998744333 22344555 69999999999888877666554444433421        123333 233321 


Q ss_pred             -----cCCCcEEEEeccc-cHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434           82 -----LHSADIIVEAIVE-SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        82 -----~~~aD~Vi~~v~e-~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                           ..++|+|+..... ..+ ....+.++...+++++.|++..
T Consensus       223 ~~~~~~~~advi~~~~~~f~~~-~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         223 EWRERIANTSVIFVNNFAFGPE-VDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHHHHHCSEEEECCTTTCHH-HHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccCcceEEEEcceecchH-HHHHHHHHHHhCCCCcEEEEec
Confidence                 3568888853322 223 3345667777788888776554

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.07  E-value=0.58  Score=35.62  Aligned_cols=33  Identities=15%  Similarity=0.360  Sum_probs=28.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -++|+|||+|.-|..+|..+++++.+++..-+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            479999999999999999999999887766544

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.87  E-value=0.31  Score=33.06  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             CcEEEEECCC----------hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434            5 MKVMGVVGSG----------QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR   74 (297)
Q Consensus         5 ~~~I~viG~G----------~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .++|||+|+=          .....+...|.+.|.+|.+||+.-...                          .......
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~--------------------------~~~~~~~   68 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL--------------------------ESEDQSV   68 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCC--------------------------CTTCCSE
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChh--------------------------HhccCCE
Confidence            4689999983          356678889999999999999864310                          0112335


Q ss_pred             EecCccc-cCCCcEEEEec
Q 022434           75 CTSNLKD-LHSADIIVEAI   92 (297)
Q Consensus        75 ~~~~~~~-~~~aD~Vi~~v   92 (297)
                      ...++++ ++.+|+||...
T Consensus        69 ~~~~l~~~~~~sDiII~~~   87 (108)
T d1dlja3          69 LVNDLENFKKQANIIVTNR   87 (108)
T ss_dssp             ECCCHHHHHHHCSEEECSS
T ss_pred             EEeCHHHHHhhCCEEEEcC
Confidence            6667776 67789777554

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.83  E-value=0.99  Score=29.33  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||.|||.|.--.+||..|.+..++|.++--|+
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            589999999999999999999999988874443

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=81.66  E-value=3.9  Score=32.67  Aligned_cols=32  Identities=38%  Similarity=0.678  Sum_probs=26.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHC----C-------CcEEEEeCC
Q 022434            6 KVMGVVGSGQMGSGIAQLGVMD----G-------LDVWLVDTD   37 (297)
Q Consensus         6 ~~I~viG~G~mG~~iA~~l~~~----G-------~~V~~~d~~   37 (297)
                      .||.|.|+|.-|.++|..+...    |       .+++++|+.
T Consensus        26 ~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~k   68 (298)
T d1gq2a1          26 HTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK   68 (298)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETT
T ss_pred             cEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCC
Confidence            5899999999999999987643    3       368899875

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=81.34  E-value=4.4  Score=30.91  Aligned_cols=95  Identities=13%  Similarity=0.018  Sum_probs=56.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccc-
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKD-   81 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-   81 (297)
                      -++|.=||+|.=+  ++..+++ .|.+|+.+|.+++.++.+++..+       +.|.         ..++.+ ..|.++ 
T Consensus        34 g~~VLDiGCG~G~--~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~-------~~gl---------~~~v~~~~~d~~~~   95 (245)
T d1nkva_          34 GTRILDLGSGSGE--MLCTWARDHGITGTGIDMSSLFTAQAKRRAE-------ELGV---------SERVHFIHNDAAGY   95 (245)
T ss_dssp             TCEEEEETCTTCH--HHHHHHHHTCCEEEEEESCHHHHHHHHHHHH-------HTTC---------TTTEEEEESCCTTC
T ss_pred             CCEEEEEcCCCCH--HHHHHHHhcCCEEEEEecccchhhHHHHHHH-------Hhhc---------cccchhhhhHHhhc
Confidence            4688889998744  3344444 58899999999998887755432       2221         123333 233333 


Q ss_pred             c--CCCcEEEEec-cccHHHHHHHHHHHHhhcCCCeEEE
Q 022434           82 L--HSADIIVEAI-VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~--~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      .  ...|+|+..- .....-...+++++...++++..++
T Consensus        96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~  134 (245)
T d1nkva_          96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML  134 (245)
T ss_dssp             CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred             cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEE
Confidence            1  3468777432 1111113467888888888876544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.25  E-value=2.4  Score=33.50  Aligned_cols=107  Identities=15%  Similarity=0.221  Sum_probs=62.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCChhhhcccCCCcEEe-cC
Q 022434            4 KMKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISS---SIQKFVSKGQLSQAVGTDAPRRLRCT-SN   78 (297)
Q Consensus         4 ~~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~-~~   78 (297)
                      ..++|.|||+|.-+..  ..+++.+ -+|+++|.|++-++.+++....   .++...          .....|+.+. .|
T Consensus        72 ~p~~vLiiG~G~G~~~--~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~----------~~~d~rv~i~~~D  139 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTV--REVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAML----------NGKHEKAKLTIGD  139 (276)
T ss_dssp             CCCEEEEEECTTSHHH--HHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHH----------TTCCSSEEEEESC
T ss_pred             CCceEEEecCCchHHH--HHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhh----------ccCCCCceEEECh
Confidence            3579999999975444  3344444 3799999999988877543210   000000          0011333332 22


Q ss_pred             cc----ccCCCcEEEEeccccHHH-----HHHHHHHHHhhcCCCeEEEecCCC
Q 022434           79 LK----DLHSADIIVEAIVESEDV-----KKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        79 ~~----~~~~aD~Vi~~v~e~~~~-----k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      ..    .-+.-|+||.-.+++...     ..+.++.+.+.++++.+++.++.+
T Consensus       140 a~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         140 GFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             HHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            11    124579998766554321     246788899999998888876543

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=81.10  E-value=2.5  Score=30.11  Aligned_cols=67  Identities=7%  Similarity=0.040  Sum_probs=44.5

Q ss_pred             cEEEEECCCh---hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434            6 KVMGVVGSGQ---MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~I~viG~G~---mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .+|++||=+.   +..+++..+++-|.+++++-..+.....-                   .........+..++++++ 
T Consensus         4 l~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~-------------------~~~~~~~~~~~~~~d~~ea   64 (153)
T d1pg5a2           4 LVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARK-------------------EILDELNYPVKEVENPFEV   64 (153)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCH-------------------HHHTTCCSCEEEESCGGGT
T ss_pred             CEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccch-------------------hhcccCCCeEEEEeCHHHH
Confidence            5899999854   89999999999999987765543211000                   000111234667788776 


Q ss_pred             cCCCcEEEEe
Q 022434           82 LHSADIIVEA   91 (297)
Q Consensus        82 ~~~aD~Vi~~   91 (297)
                      ++++|+|...
T Consensus        65 i~~aDvvy~~   74 (153)
T d1pg5a2          65 INEVDVLYVT   74 (153)
T ss_dssp             GGGCSEEEEE
T ss_pred             hhcCCeEEEe
Confidence            9999998754

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.04  E-value=0.63  Score=32.33  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=31.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -++|+|||.|.-+.-.|..|++.+-+|+++-|.++
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            47899999999999999999999999999987653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.98  E-value=1.3  Score=35.29  Aligned_cols=42  Identities=26%  Similarity=0.173  Sum_probs=33.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .++|.=||+|. | .++..|++.|++|+.+|.+++.++.+++..
T Consensus        57 ~~~vLD~GcG~-G-~~~~~la~~g~~v~gvD~S~~ml~~A~~~~   98 (292)
T d1xvaa_          57 CHRVLDVACGT-G-VDSIMLVEEGFSVTSVDASDKMLKYALKER   98 (292)
T ss_dssp             CCEEEESSCTT-S-HHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEecCCC-c-HHHHHHHHcCCeeeeccCchHHHHHHHHHH
Confidence            35888899986 3 356667889999999999999888775543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.76  E-value=0.29  Score=35.48  Aligned_cols=28  Identities=18%  Similarity=0.208  Sum_probs=24.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEE
Q 022434            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVW   32 (297)
Q Consensus         5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~   32 (297)
                      -++|.|||+|..|.-+|..+++.|.+++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCccc
Confidence            3789999999999999999999997653

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.20  E-value=1.2  Score=31.98  Aligned_cols=72  Identities=17%  Similarity=0.332  Sum_probs=48.2

Q ss_pred             CcEEEEECC---ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434            5 MKVMGVVGS---GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~I~viG~---G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      -.+|++||=   +++..+++..+..-|.+++++.+..-.....      ......+.+           ..+..++|+++
T Consensus         4 gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~------~~~~~~~~~-----------~~~~~~~d~~~   66 (157)
T d1ml4a2           4 GLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRH------IVEELREKG-----------MKVVETTTLED   66 (157)
T ss_dssp             SEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHH------HHHHHHHTT-----------CCEEEESCTHH
T ss_pred             CCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchH------HHHHHHhhc-----------ccceeecCHHH
Confidence            358999999   5789999999999999999987643221110      001112222           23456778776


Q ss_pred             -cCCCcEEEEecc
Q 022434           82 -LHSADIIVEAIV   93 (297)
Q Consensus        82 -~~~aD~Vi~~v~   93 (297)
                       ++++|+|....-
T Consensus        67 av~~aDvvy~~~~   79 (157)
T d1ml4a2          67 VIGKLDVLYVTRI   79 (157)
T ss_dssp             HHTTCSEEEECCC
T ss_pred             hhccCcEEEeecc
Confidence             999998887654