Citrus Sinensis ID: 022513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MGDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKSLKPLEMILKYTRHKINIYKLKKTQSEEDYIFFSLEWSPILKSYIII
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccEEEEEEccccccccccccccHHHHHHHccccHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccHHccccccEEccccEEEEccccccHHHHHEEEc
Coil and Loop (DISEMBL)
mgdkvagikqkggfraCTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYskslhppdcgkssclKGAIAAYFYGSLYLYslgcggnrgtlpalgagqfdendpkGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAigkpfyriqqpgesplvrvaqvphslpipflfgpkslkpLEMILKYTRHKINIyklkktqseedYIFFSlewspilksyiii
Flexible Loop (DISEMBL)
mgdkvagikqkggfraCTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPipflfgpkslkPLEMILKYTRHKINIyklkktqseEDYIFfslewspilksyiii
Low Complexity Region (SEG)
MGDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAyfygslylyslgcggNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKSLKPLEMILKYTRHKINIYKLKKTQSEEDYIFFSLEWSPILKSYIII
Disordered region (IsUnstruct)
*******IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE***KGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKSLKPLEMILKYTRHKINIYKLKKTQSEEDYIFFSLEWSPILKSYII*
Disordered Region (DISOPRED)
*************FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC*****LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE******KALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFG******************************DYIFFSLEWSPILKSYIII
Disordered Region (DISEMBL)
********KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKSLKPLEMILKYTRHKINIYKLKKTQSEEDYIFFSLEWSPILKSYIII
Disordered Region (DISPRO)
*****AG*KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKSLKPLEMILKYTRHKINIYKLKKTQSEEDYIFFSLEWSPILKSYIII
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKSLKPLEMILKYTRHKINIYKLKKTQSEEDYIFFSLEWSPILKSYIII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q8VYE4	567	Probable peptide/nitrate	yes	no	0.790	0.412	0.397	4e-42
Q8H157	585	Nitrate transporter 1.2 O	no	no	0.790	0.4	0.389	5e-41
Q93VV5	591	Probable peptide/nitrate	no	no	0.770	0.385	0.377	2e-39
Q9FM20	589	Probable peptide/nitrate	no	no	0.729	0.366	0.361	8e-38
Q9LSE8	521	Putative peptide/nitrate	no	no	0.746	0.424	0.361	2e-37
Q9M390	570	Peptide transporter PTR1	no	no	0.780	0.405	0.331	5e-36
Q9LSF0	515	Probable peptide/nitrate	no	no	0.746	0.429	0.334	2e-35
Q9LFB8	570	Peptide transporter PTR5	no	no	0.787	0.408	0.309	7e-33
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.790	0.399	0.291	7e-32
Q84WG0	545	Probable peptide/nitrate	no	no	0.945	0.513	0.303	7e-32

>sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 150/239 (62%), Gaps = 5/239 (2%)

Query: 3   DKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG 62
           +K A   + GG  A +FV  +  LEN+ F+AN  ++VLY KN MH  +A +S+ +T F  
Sbjct: 20  NKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMA 79

Query: 63  STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK-- 120
           + FLL L+GGF++D + S F   L+  ++E L L++LTIQA   SL PP C  S+ L+  
Sbjct: 80  TAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKSSAALRCE 139

Query: 121 ---GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177
              G+ AA+ +  LYL SLG GG +G+LP+ GA QFDE  PKG K  +++FN+Y+F  + 
Sbjct: 140 VVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSC 199

Query: 178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
            A++ VT +V++  ++GW  GF +S+++  + ++   +G  FY+ + P  SPL  + +V
Sbjct: 200 GALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKV 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  168 bits (425), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 148/236 (62%), Gaps = 2/236 (0%)

Query: 3   DKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG 62
           ++ A   + GG  A +FV V+  LEN+ ++AN  ++VLY +  MH   + ++N +TNF G
Sbjct: 18  NRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSANDVTNFMG 77

Query: 63  STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC--LK 120
           + FLL L+GGF+SD + S F   L+  ++E L L++LTIQA + SL PP C   +C  + 
Sbjct: 78  TAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSCDSPTCEEVS 137

Query: 121 GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM 180
           G+ AA  +  LYL +LG GG +G+L + GA QFDE+ PKG K  +++FN+++F     A+
Sbjct: 138 GSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGAL 197

Query: 181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
           + VT +V++  ++GW  GF +S++A  + ++    G  FYR + P  SPL  + +V
Sbjct: 198 VAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKV 253

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 138/233 (59%), Gaps = 5/233 (2%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
            + GG RA  FV  L A E MG  A G +++ Y  NEMHF ++ A+N +TNF G+ F+  
Sbjct: 40  NKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFA 99

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG---KSSC--LKGAI 123
           L+GG++SD +L  F T ++FG +E+   ++L++QA+   L PP C      +C   KG  
Sbjct: 100 LLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFK 159

Query: 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183
           A  F+ +LYL +LG G  +  + A GA QF ++ PK +K L+SYFN   FA ++  +I +
Sbjct: 160 AMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIAL 219

Query: 184 TAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
           T +V+V    G  +GF +S+ A  +G+I+L  G  ++R ++P  S    +A V
Sbjct: 220 TLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHV 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2

 Score =  157 bits (397), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 11/227 (4%)

Query: 10  QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCL 69
           + GG  A +FV V+  LEN+ F+AN  ++VLY   +M F  +GA+N +T F G+ F L L
Sbjct: 56  RHGGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLAL 115

Query: 70  VGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129
           +GGF++D + + F   LV   +E L L++LT+QA+  S  P               + + 
Sbjct: 116 LGGFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEPWS-----------RVFLFV 164

Query: 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189
            LYL +LG GG +G+LP  GA QFDE    G +  + +FN+++F+ +  A+I VT +V++
Sbjct: 165 GLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWL 224

Query: 190 FIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             ++GW  GF +S+ A LI +     G   YR++ P  SP+  + +V
Sbjct: 225 EDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKV 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis thaliana GN=At3g25280 PE=1 SV=1

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 6/227 (2%)

Query: 10  QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCL 69
           + GG RA + V V+  +EN+ FIANG + V YF   MH+  A A+N +TNF G++FLL L
Sbjct: 21  KHGGIRAASIVCVVVMMENIVFIANGFNFVKYFMGSMHYTPATAANMVTNFMGTSFLLTL 80

Query: 70  VGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129
            GGFI+D++++ F T +VF  +E++ L++LT QA++  L P      S L+ AI    + 
Sbjct: 81  FGGFIADSFVTHFTTFIVFCCIELMGLILLTFQAHNPKLLPEKDKTPSTLQSAI---LFT 137

Query: 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189
            LY  ++G GG + +LP+ G  Q D  +P   + ++ +F++  F+     ++ VT ++++
Sbjct: 138 GLYAMAIGTGGLKASLPSHGGDQIDRRNP---RLISRFFDWLYFSICSGCLLAVTVVLWI 194

Query: 190 FIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
              +GW   F IS       L    +G PFYR ++P  SPL ++A V
Sbjct: 195 EEKKGWIWSFNISVGILATALCIFTVGLPFYRFKRPNGSPLKKIAIV 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 132/232 (56%), Gaps = 1/232 (0%)

Query: 6   AGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTF 65
           A  ++ G ++AC F+      E + +   G ++V Y ++ ++   A A+N +TN+ G+ +
Sbjct: 20  ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCY 79

Query: 66  LLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL-KGAIA 124
           +  L+G FI+D YL R+ T   F  + V  + +LT+ A    L P +C   +C    +  
Sbjct: 80  ITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQT 139

Query: 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT 184
           A F+ +LY+ +LG GG +  + + GA QFDEND       +S+FN++ F+  + A+I  T
Sbjct: 140 AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAAT 199

Query: 185 AIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
            +V++ ++ GW  GF + +VA +I +     G  FYR+Q+PG SPL R+ QV
Sbjct: 200 VLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQV 251

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis thaliana GN=At3g25260 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 10  QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCL 69
           + GG +A     V+  +ENM F+A   + ++YF   M++    A+  +TNF G++FLL +
Sbjct: 21  KHGGIKAAFIACVVETMENMVFLACSTNFMMYFTKSMNYSTPKAATMVTNFVGTSFLLTI 80

Query: 70  VGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129
            GGF++D++L+RFA  ++FG++E+L L+MLT+QA+   L P    K S  +  +    + 
Sbjct: 81  FGGFVADSFLTRFAAFVLFGSIELLGLIMLTLQAHITKLQPQGGKKPSTPQSTV---LFT 137

Query: 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189
            LY  ++G GG +G+LPA G    D+   +  + ++ +FN+Y F+  L   + VT +V++
Sbjct: 138 GLYAIAIGVGGVKGSLPAHGG---DQIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWI 194

Query: 190 FIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             + GW   F IS+      +     G P YR ++P  SPL R+  V
Sbjct: 195 EENIGWSSSFTISTAVLASAIFVFVAGCPMYRFKRPAGSPLTRIVNV 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%)

Query: 4   KVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGS 63
           K A   + G ++AC F+      E + +     +++ Y + +M+ +   AS +++N+ G+
Sbjct: 19  KPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGT 78

Query: 64  TFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI 123
            +   L+G FI+D YL R+ T   F  + +  + +LTI A    L P   G++       
Sbjct: 79  CYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQ 138

Query: 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183
            A  + +LYL +LG GG +  + + GA QFD+ D K  ++ +S+FN++ F   + AMI  
Sbjct: 139 TAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIAS 198

Query: 184 TAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
           + +V++ ++ GW  G  + +VA  I ++    G  FYR+Q+PG SPL R+ QV
Sbjct: 199 SVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQV 251

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  137 bits (346), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 130/240 (54%), Gaps = 6/240 (2%)

Query: 2   GDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF 61
           G++V    Q G ++AC+FV V    E M +     ++V+Y   ++H     +SN +TN+ 
Sbjct: 20  GNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWV 78

Query: 62  GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS---C 118
           G+++L  ++G +++D +  R+ T ++   + +L + +LT+      L PP C  ++   C
Sbjct: 79  GTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENC 138

Query: 119 LKGAIA--AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176
            K ++   A F+G+LY  ++G GG +  +  +GA QFDE DPK      S+FN+++F+  
Sbjct: 139 EKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIF 198

Query: 177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
                  T +VYV  + GW +G+ +S++     +    +G   YR + P  SP  ++A+V
Sbjct: 199 FGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARV 258

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  137 bits (346), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 10/290 (3%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
           +  G ++AC F+F     E + +     +++ YF NE+H     A+  +  + G+ ++  
Sbjct: 41  QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGTCYITP 100

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI--AAY 126
           L+G  I+D Y  R+ T   F  +    +V LT+ A    L P +C  S C    +  +  
Sbjct: 101 LIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGSLCPPATMVQSTV 160

Query: 127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
            +  LYL +LG GG +  + + GA QFD+ DP      AS+FN++ F   + A +  T +
Sbjct: 161 LFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVL 220

Query: 187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLF 246
           V++  + GW LGFLI +V   +  ++   G P YR Q+P  SP+  V QV     +   +
Sbjct: 221 VWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQV-----LVAAY 275

Query: 247 GPKSLKPLEMILKYTRHKINIYKL-KKTQSEEDYIFFSLEWSPILKSYII 295
              +LK  E          N +KL   TQ EE  I   L   PI  S II
Sbjct: 276 RKSNLKVPEDSTDEGDANTNPWKLCTVTQVEEVKILLRL--VPIWASGII 323

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
357441977	606	Peptide transporter PTR1 [Medicago trunc	0.797	0.389	0.608	6e-81
356574054	618	PREDICTED: probable peptide/nitrate tran	0.817	0.391	0.600	2e-80
356534943	604	PREDICTED: probable peptide/nitrate tran	0.820	0.402	0.601	8e-80
356505723	582	PREDICTED: nitrate transporter 1.2-like	0.770	0.391	0.614	1e-77
357511669	585	Peptide transporter PTR1 [Medicago trunc	0.770	0.389	0.609	2e-76
225450417	736	PREDICTED: probable peptide/nitrate tran	0.810	0.326	0.563	9e-74
296089862	626	unnamed protein product [Vitis vinifera]	0.810	0.383	0.563	3e-73
255543056	640	nitrate transporter, putative [Ricinus c	0.763	0.353	0.570	2e-68
224124288	623	predicted protein [Populus trichocarpa]	0.807	0.383	0.563	3e-65
449454111	662	PREDICTED: probable peptide/nitrate tran	0.763	0.341	0.570	1e-63

>gi|357441977|ref|XP_003591266.1| Peptide transporter PTR1 [Medicago truncatula] gi|355480314|gb|AES61517.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  306 bits (785), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 149/245 (60%), Positives = 186/245 (75%), Gaps = 9/245 (3%)

Query: 1   MGDK---------VAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA 51
           MGDK         +   KQKGGFRA  F+FVLSAL+NMGF+ N +S+VLYF   MHFD++
Sbjct: 1   MGDKEVKEELKPIIQWKKQKGGFRASMFIFVLSALDNMGFVTNMVSLVLYFIGVMHFDLS 60

Query: 52  GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP 111
            ++NTLTNF GSTFLL LVG FISDTYL+RF TCLVFG+LEV++LVM+T+QA   +LHP 
Sbjct: 61  SSANTLTNFMGSTFLLSLVGAFISDTYLNRFTTCLVFGSLEVMALVMITVQAALDNLHPK 120

Query: 112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171
            CGKSSC++G IA  FY SL LY+LG GG RG+L A GA QFDE DP  AKALA++FN+ 
Sbjct: 121 ACGKSSCVEGGIAVMFYTSLCLYALGMGGVRGSLTAFGANQFDEKDPNEAKALATFFNWL 180

Query: 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLV 231
           L ++TL ++IGVT IV+V   + W  GF I +VA+ IG + LAIGKPFYRI+ PGESP++
Sbjct: 181 LLSSTLGSVIGVTGIVWVSTQKAWHWGFFIITVASSIGFVTLAIGKPFYRIKTPGESPIL 240

Query: 232 RVAQV 236
           R+ QV
Sbjct: 241 RIIQV 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574054|ref|XP_003555167.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/248 (60%), Positives = 187/248 (75%), Gaps = 6/248 (2%)

Query: 2   GDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF 61
           GDK    + KGGFRA  F+FVLSAL+NMGF+AN +S+VLYF   MHFD++ ++NTLTNF 
Sbjct: 19  GDKEVKEELKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTNFM 78

Query: 62  GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG 121
           GSTFLL LVGGFISDTY +R  TCL+FG+LEVL+LVMLT+QA    LHP  CGKSSC+KG
Sbjct: 79  GSTFLLSLVGGFISDTYFNRLTTCLLFGSLEVLALVMLTVQAALDHLHPDFCGKSSCVKG 138

Query: 122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI 181
            IA  FY SLYL +LG GG RG+L A GA QF E +P+ AKALASYFN+ L ++TL ++I
Sbjct: 139 GIAVMFYSSLYLLALGMGGVRGSLTAFGADQFGEKNPQEAKALASYFNWLLLSSTLGSII 198

Query: 182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV----- 236
           GVT +V+V   + W  GF+I +VA+ IG + LA+GKPFYRI+ PG+SP+ R+AQV     
Sbjct: 199 GVTGVVWVSTQKAWHWGFIIITVASSIGFLTLALGKPFYRIKTPGQSPISRIAQVIVVAF 258

Query: 237 -PHSLPIP 243
               LP+P
Sbjct: 259 KNRKLPLP 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534943|ref|XP_003536010.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 151/251 (60%), Positives = 191/251 (76%), Gaps = 8/251 (3%)

Query: 1   MGDK-VAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTN 59
           MGDK V   +QKGGFRA  F+FVLSAL+NMGF+AN +S+VLYF   MHFD++ ++NTLTN
Sbjct: 1   MGDKEVKEEEQKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTN 60

Query: 60  FFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL 119
           F GSTFLL LVGGFISDTY +R  TCL+FG+LEVL+LVMLT+QA    LHP  CGKSSC+
Sbjct: 61  FMGSTFLLSLVGGFISDTYFNRLTTCLLFGSLEVLALVMLTVQAGLDHLHPDYCGKSSCV 120

Query: 120 KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE-NDPKGAKALASYFNFYLFATTLA 178
           KG IA  FY SLYL +LG GG RG+L A GA QFDE  +P  AKALAS+FN+ L ++TL 
Sbjct: 121 KGGIAVMFYSSLYLLALGMGGVRGSLTAFGADQFDEKKNPGEAKALASFFNWILLSSTLG 180

Query: 179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV-- 236
           ++IGVT +V+V   + W  GF+I ++A+ IG + LA+GKPFYRI+ PG+SP++R+AQV  
Sbjct: 181 SIIGVTGVVWVSTQKAWHWGFIIITIASSIGFLTLALGKPFYRIKTPGQSPILRIAQVIV 240

Query: 237 ----PHSLPIP 243
                  LP+P
Sbjct: 241 VAFKNRKLPLP 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505723|ref|XP_003521639.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 140/228 (61%), Positives = 178/228 (78%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
           + KGGF A  F+FVLSAL+NMGF+AN +S+VLYF   MHFD+A ++NTLTNF GST+LL 
Sbjct: 24  RSKGGFMASMFIFVLSALDNMGFVANMVSIVLYFYGVMHFDLASSANTLTNFMGSTYLLS 83

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY 128
           LVGGFISDTYL+RF TCL+FG+LEVL+L MLT+QA SK LHP  CGKSSC+KG IA  FY
Sbjct: 84  LVGGFISDTYLNRFTTCLLFGSLEVLALAMLTVQAASKHLHPEACGKSSCVKGGIAVMFY 143

Query: 129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY 188
            SL L +LG GG RG++ A GA QFDE DP  AKALAS+FN+ L ++T+ A+ GVT +V+
Sbjct: 144 TSLCLLALGMGGVRGSMTAFGADQFDEKDPTEAKALASFFNWLLLSSTVGAITGVTGVVW 203

Query: 189 VFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
           V   + W  GF I ++A+ +G + LA+GK FYRI+ PG+SP +R+AQV
Sbjct: 204 VSTQKAWHWGFFIITIASSVGFVTLALGKQFYRIKTPGDSPTLRIAQV 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511669|ref|XP_003626123.1| Peptide transporter PTR1 [Medicago truncatula] gi|87241322|gb|ABD33180.1| TGF-beta receptor, type I/II extracellular region [Medicago truncatula] gi|355501138|gb|AES82341.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 176/228 (77%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
           ++KGGFRA  F+FVLSAL+NMGF+AN +S+VLYF   MHFDI  ++NTLTNF GSTFLL 
Sbjct: 18  RKKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDIPSSANTLTNFMGSTFLLS 77

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY 128
           LVGGFISDTYL+RF TCL+FG+LEVL+L ++T QA S  LHP  CGKSSC+KG I   FY
Sbjct: 78  LVGGFISDTYLNRFTTCLLFGSLEVLALALVTFQAASDHLHPNACGKSSCVKGGIEFMFY 137

Query: 129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY 188
            SL L +LG GG RG++ A GA QF+E D   AKALAS+FN+ L ++TL A+ GVT +V+
Sbjct: 138 TSLSLLALGIGGVRGSMTAFGADQFEEKDSNEAKALASFFNWLLLSSTLGAITGVTGVVW 197

Query: 189 VFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
           V   + W  GF I ++A+ IG + LA+GKPFYRI+ PG+SP +R+AQV
Sbjct: 198 VSTQRAWHWGFFIITIASSIGFVTLALGKPFYRIKTPGDSPTIRIAQV 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450417|ref|XP_002276071.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera]

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 138/245 (56%), Positives = 177/245 (72%), Gaps = 5/245 (2%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRA  F+++L++LENMGF+AN +S+  YF   MHFD++GA+NTLTNF G+TFLL LV
Sbjct: 140 KGGFRASMFIYILTSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLV 199

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGF+SDT LSR  TCL+FGT+E+L L+++TIQAYS  LHP DCGK SC++G  A  FY S
Sbjct: 200 GGFVSDTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVS 259

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           L LY+LG GG RG LPALGA QF++ DP  A+ALAS+FN+ + + T+ A +GVT IV+V 
Sbjct: 260 LCLYALGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVS 319

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKS 250
               W+ GF IS V   IG I LA+G+ FYRIQ  G+SP++R  QV     I      +S
Sbjct: 320 STVTWYWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQV-----IVVAIKNRS 374

Query: 251 LKPLE 255
           L P E
Sbjct: 375 LSPPE 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089862|emb|CBI39681.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/245 (56%), Positives = 177/245 (72%), Gaps = 5/245 (2%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRA  F+++L++LENMGF+AN +S+  YF   MHFD++GA+NTLTNF G+TFLL LV
Sbjct: 30  KGGFRASMFIYILTSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLV 89

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGF+SDT LSR  TCL+FGT+E+L L+++TIQAYS  LHP DCGK SC++G  A  FY S
Sbjct: 90  GGFVSDTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVS 149

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           L LY+LG GG RG LPALGA QF++ DP  A+ALAS+FN+ + + T+ A +GVT IV+V 
Sbjct: 150 LCLYALGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVS 209

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSLPIPFLFGPKS 250
               W+ GF IS V   IG I LA+G+ FYRIQ  G+SP++R  QV     I      +S
Sbjct: 210 STVTWYWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQV-----IVVAIKNRS 264

Query: 251 LKPLE 255
           L P E
Sbjct: 265 LSPPE 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543056|ref|XP_002512591.1| nitrate transporter, putative [Ricinus communis] gi|223548552|gb|EEF50043.1| nitrate transporter, putative [Ricinus communis]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 173/226 (76%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRAC FVFVL AL+NMGFIAN +S+VLYF   M+FDI  ++NTLTN  GS FLL L+
Sbjct: 18  KGGFRACMFVFVLVALDNMGFIANMVSLVLYFLKVMYFDIPNSANTLTNLMGSIFLLTLL 77

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGFISDT+L++  T L+F  +E+L++V++TIQA++KSLHPP CGK  C++G I    Y S
Sbjct: 78  GGFISDTFLNKLYTVLLFAVIEILAMVLMTIQAHAKSLHPPYCGKPKCVEGKIEFTLYAS 137

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           L L +LG GG RG LP+LGA QF++NDP+ AK LA+YFN+   +T L A +GVT IV+V 
Sbjct: 138 LALLALGSGGVRGALPSLGADQFNQNDPEEAKDLATYFNWMTLSTVLGAAVGVTGIVWVS 197

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
           ++  W+ GF+IS++A  +G I LA GK +Y +++PGESPL+R+ QV
Sbjct: 198 VNDAWYKGFMISTIAAFVGFIVLACGKRYYHLKEPGESPLIRIVQV 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124288|ref|XP_002329986.1| predicted protein [Populus trichocarpa] gi|222871411|gb|EEF08542.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 138/245 (56%), Positives = 184/245 (75%), Gaps = 6/245 (2%)

Query: 5   VAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGST 64
           +AG K +GGFRA  FV+ L AL++MGF+AN +S+VLYF   MHFDI  ++NTLTN  GST
Sbjct: 24  LAGKKGRGGFRATMFVYGLVALDSMGFVANMVSLVLYFMGVMHFDIPTSANTLTNLMGST 83

Query: 65  FLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA 124
           FLL ++GGFISD YL+R  T L+FG LE+++LV++TIQA++K++HPP CGK+SC++G I 
Sbjct: 84  FLLTVLGGFISDAYLNRLHTVLLFGFLEIMALVLITIQAHAKNMHPPACGKASCVEGGIE 143

Query: 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT 184
              Y SL L +LG GG RG LPALGA QF+E DP+ A+ALASYFN+   +T + A++GVT
Sbjct: 144 YMLYFSLGLLALGSGGVRGALPALGADQFNEKDPEEARALASYFNWMTLSTVVGAVVGVT 203

Query: 185 AIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV------PH 238
            IV + +  GWW GFL+S+V T IG + LA GKPFY ++QPG+SPL+R+AQV        
Sbjct: 204 GIVNLSMFHGWWKGFLVSTVGTFIGFVILAAGKPFYHLRQPGDSPLIRIAQVFALAIRNR 263

Query: 239 SLPIP 243
            LP+P
Sbjct: 264 RLPLP 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454111|ref|XP_004144799.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Cucumis sativus]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 167/226 (73%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRA  F+F L   E+MGF+AN  S+V YF   MHFD+  A+NTLTNF GS FLL L+
Sbjct: 33  KGGFRATMFIFGLLTFESMGFVANMTSLVQYFLFVMHFDLQTAANTLTNFMGSAFLLSLL 92

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGF+SDTY++R  TCL+FG LEV++L+++T+QAYS  L P       C+KG IA  FY S
Sbjct: 93  GGFLSDTYINRLNTCLIFGFLEVIALILITVQAYSHDLLPSPLCPKDCVKGRIAFVFYTS 152

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           LYL ++G GG RG LPALGA QF++ DPK AKAL ++FN+ L +  + A +GVT IV+V 
Sbjct: 153 LYLLAIGSGGVRGALPALGADQFNQKDPKEAKALGTFFNYMLLSVVIGAAVGVTLIVWVA 212

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
           +++ W+ GF IS++A L+G I  AIGKPFYRIQ PG+SPL+RV QV
Sbjct: 213 VNKAWYWGFFISALAALVGFIIFAIGKPFYRIQVPGQSPLLRVIQV 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.790	0.412	0.364	1.6e-40
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.780	0.394	0.367	2e-40
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.760	0.380	0.352	9.4e-34
TAIR|locus:2170683	589	AT5G62730 [Arabidopsis thalian	0.334	0.168	0.424	2.2e-33
TAIR|locus:2006907	601	AT1G33440 [Arabidopsis thalian	0.75	0.369	0.359	3.8e-33
TAIR|locus:2090230	521	AT3G25280 [Arabidopsis thalian	0.739	0.420	0.342	1.2e-32
TAIR|locus:2090325	515	AT3G25260 [Arabidopsis thalian	0.739	0.425	0.315	2.2e-31
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.770	0.4	0.308	8.1e-30
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.760	0.381	0.3	1.2e-28
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.766	0.380	0.327	1.6e-28

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 87/239 (36%), Positives = 140/239 (58%)

Query:     3 DKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG 62
             +K A   + GG  A +FV  +  LEN+ F+AN  ++VLY KN MH  +A +S+ +T F  
Sbjct:    20 NKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMA 79

Query:    63 STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK-- 120
             + FLL L+GGF++D + S F   L+  ++E L L++LTIQA   SL PP C  S+ L+  
Sbjct:    80 TAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKSSAALRCE 139

Query:   121 ---GAIAAXXXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177
                G+ AA                +G+LP+ GA QFDE  PKG K  +++FN+Y+F  + 
Sbjct:   140 VVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSC 199

Query:   178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
              A++ VT +V++  ++GW  GF +S+++  + ++   +G  FY+ + P  SPL  + +V
Sbjct:   200 GALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKV 258

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 86/234 (36%), Positives = 139/234 (59%)

Query:     6 AGIKQK-GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGST 64
             A +K + GG  A +FV V+  LEN+ ++AN  ++VLY +  MH   + ++N +TNF G+ 
Sbjct:    20 AAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSANDVTNFMGTA 79

Query:    65 FLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC--LKGA 122
             FLL L+GGF+SD + S F   L+  ++E L L++LTIQA + SL PP C   +C  + G+
Sbjct:    80 FLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSCDSPTCEEVSGS 139

Query:   123 IAAXXXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG 182
              AA                +G+L + GA QFDE+ PKG K  +++FN+++F     A++ 
Sbjct:   140 KAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVA 199

Query:   183 VTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             VT +V++  ++GW  GF +S++A  + ++    G  FYR + P  SPL  + +V
Sbjct:   200 VTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKV 253

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 9.4e-34, P = 9.4e-34
 Identities = 81/230 (35%), Positives = 127/230 (55%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG RA  FV  L A E MG  A G +++ Y  NEMHF ++ A+N +TNF G+ F+  L+G
Sbjct:    43 GGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFALLG 102

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK---SSC--LKGAIAAX 126
             G++SD +L  F T ++FG +E+   ++L++QA+   L PP C      +C   KG  A  
Sbjct:   103 GYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFKAMI 162

Query:   127 XXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
                            +  + A GA QF ++ PK +K L+SYFN   FA ++  +I +T +
Sbjct:   163 FFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLL 222

Query:   187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             V+V    G  +GF +S+ A  +G+I+L  G  ++R ++P  S    +A V
Sbjct:   223 VWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHV 272

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 42/99 (42%), Positives = 63/99 (63%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG  A +FV V+  LEN+ F+AN  ++VLY   +M F  +GA+N +T F G+ F L L+G
Sbjct:    58 GGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLALLG 117

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP 110
             GF++D + + F   LV   +E L L++LT+QA+  S  P
Sbjct:   118 GFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEP 156

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 3.8e-33, P = 3.8e-33
 Identities = 83/231 (35%), Positives = 124/231 (53%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG RA  FV    A E M   A G +++ Y  NEMHF ++ ++N +TNF G+ FLL L+G
Sbjct:    40 GGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLG 99

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS----CLK--GAIAA 125
             GF+SD+YL  F T LVFG +E+   ++L++QA+   L PP+C   S    C++  G  AA
Sbjct:   100 GFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAA 159

Query:   126 XXXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA 185
                             +  + + GA QF   D    + L+S+FN   FA ++  +I +T 
Sbjct:   160 TLYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAYFAFSMGQLIALTL 216

Query:   186 IVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             +V+V    G  +GF +S+     G+I+L  G  FYR + P  S    +AQV
Sbjct:   217 LVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQV 267

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2090230 AT3G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 77/225 (34%), Positives = 124/225 (55%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG RA + V V+  +EN+ FIANG + V YF   MH+  A A+N +TNF G++FLL L G
Sbjct:    23 GGIRAASIVCVVVMMENIVFIANGFNFVKYFMGSMHYTPATAANMVTNFMGTSFLLTLFG 82

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAXXXXXX 131
             GFI+D++++ F T +VF  +E++ L++LT QA++  L P      S L+ AI        
Sbjct:    83 GFIADSFVTHFTTFIVFCCIELMGLILLTFQAHNPKLLPEKDKTPSTLQSAILFTGLYAM 142

Query:   132 XXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191
                       + +LP+ G  Q D  +P+    ++ +F++  F+     ++ VT ++++  
Sbjct:   143 AIGTGGL---KASLPSHGGDQIDRRNPR---LISRFFDWLYFSICSGCLLAVTVVLWIEE 196

Query:   192 DQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
              +GW   F IS       L    +G PFYR ++P  SPL ++A V
Sbjct:   197 KKGWIWSFNISVGILATALCIFTVGLPFYRFKRPNGSPLKKIAIV 241

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2090325 AT3G25260 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 71/225 (31%), Positives = 120/225 (53%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG +A     V+  +ENM F+A   + ++YF   M++    A+  +TNF G++FLL + G
Sbjct:    23 GGIKAAFIACVVETMENMVFLACSTNFMMYFTKSMNYSTPKAATMVTNFVGTSFLLTIFG 82

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAXXXXXX 131
             GF++D++L+RFA  ++FG++E+L L+MLT+QA+   L P    K S  +  +        
Sbjct:    83 GFVADSFLTRFAAFVLFGSIELLGLIMLTLQAHITKLQPQGGKKPSTPQSTVLFTGLYAI 142

Query:   132 XXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191
                       +G+LPA G    D+   +  + ++ +FN+Y F+  L   + VT +V++  
Sbjct:   143 AIGVGGV---KGSLPAHGG---DQIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEE 196

Query:   192 DQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             + GW   F IS+      +     G P YR ++P  SPL R+  V
Sbjct:   197 NIGWSSSFTISTAVLASAIFVFVAGCPMYRFKRPAGSPLTRIVNV 241

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 8.1e-30, P = 8.1e-30
 Identities = 71/230 (30%), Positives = 121/230 (52%)

Query:     9 KQK-GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLL 67
             K+K G ++AC F+      E + +   G ++V Y ++ ++   A A+N +TN+ G+ ++ 
Sbjct:    22 KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYIT 81

Query:    68 CLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI-AAX 126
              L+G FI+D YL R+ T   F  + V  + +LT+ A    L P +C   +C   +   A 
Sbjct:    82 PLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAV 141

Query:   127 XXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
                            +  + + GA QFDEND       +S+FN++ F+  + A+I  T +
Sbjct:   142 FFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVL 201

Query:   187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             V++ ++ GW  GF + +VA +I +     G  FYR+Q+PG SPL R+ QV
Sbjct:   202 VWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQV 251

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 69/230 (30%), Positives = 115/230 (50%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG+ +   +  + A+E +  +  G+++V Y    MH   A A+NT+TNF G++F+LCL+G
Sbjct:    29 GGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLG 88

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG---KSSC--LKGAIAAX 126
             GFI+DT+L R+ T  +F  ++   + +LT+      L PP C     S C    G     
Sbjct:    89 GFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTV 148

Query:   127 XXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
                            + ++   G+ QFDE +PK    +  +FN + F   + +++ VT +
Sbjct:   149 LYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVL 208

Query:   187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             VYV  D G   G+ I + A ++ L     G   YR ++   SP+ +VA V
Sbjct:   209 VYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAV 258

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 76/232 (32%), Positives = 113/232 (48%)

Query:     9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
             + KGG     F+F     E +  +    +M+ Y   ++H  +  A+NTLTNF G++ L  
Sbjct:    22 RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTP 81

Query:    69 LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC-GKSSCLKGAIAAXX 127
             L+G FI+D++  RF T      +  + + +LTI A   +L PP C G+  C+  A  A  
Sbjct:    82 LLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVV-ADTAQL 140

Query:   128 XXXXXXXXXXXXXNRGTLP---ALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT 184
                          + G  P   A GA QFDE+DP       +YFN+Y F    A ++ VT
Sbjct:   141 SILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVT 200

Query:   185 AIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
              +V++  + GW LG  I +VA  + +IA   G   YR   P  SP  R+ QV
Sbjct:   201 VLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQV 252

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam00854	372	pfam00854, PTR2, POT family	4e-12
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-08
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-07

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 119 LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178
           L     A FY  LYL +LG GG +  + A GA QFDE           +F+++ F+    
Sbjct: 27  LSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAG 83

Query: 179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQP-GESPLVRV 233
           ++I      Y+  + G+ LGF + +V  L+ L+   +G   Y+ + P G SP    
Sbjct: 84  SLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVC 139

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 21/206 (10%)

Query: 38  MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97
           +VLY  N + ++   A+N    F    +L  L+G  I+D++L +F T L    + V+   
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 98  MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND 157
           + ++ A     HP     +  L G             +L   G  G  P + A   D+ +
Sbjct: 70  LASLGAVPSLGHPLH--DALSLVG------------LALIALGTGGIKPCVSAFGGDQFE 115

Query: 158 PKGAKALASYFNFYLFATTLAAMIGVT------AIVYVFIDQG-WWLGFLISSVATLIGL 210
            +       +F+F+ FA    ++            V  F  Q  + L F +  +   + L
Sbjct: 116 ERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLAL 175

Query: 211 IALAIGKPFYRIQQPGESPLVRVAQV 236
           I  ++G   Y+ + P  + + +V + 
Sbjct: 176 IVFSMGSKMYKKKPPVGNIVSKVMKC 201

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 33/183 (18%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 38  MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97
           +     + + FD   A+   + +    +L  ++GG+++D  L    T ++   L  +  +
Sbjct: 48  LYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL 107

Query: 98  MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND 157
           +L I            G             Y  L L  +G G  +  + +L    + ++D
Sbjct: 108 VLAI--------SSVSGPGG---------LYIGLALIIVGTGLFKPNISSLLGELYPKDD 150

Query: 158 PKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGK 217
           P+        F  +     + ++I       + I+ GW +GF +++V  +IGL+   +G+
Sbjct: 151 PRRDGG----FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206

Query: 218 PFY 220
              
Sbjct: 207 RHV 209

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	99.97
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.9
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.89
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.88
PRK10642	490	proline/glycine betaine transporter; Provisional	99.76
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.75
PRK10054	395	putative transporter; Provisional	99.74
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.74
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.74
PRK03545	390	putative arabinose transporter; Provisional	99.74
PRK12382	392	putative transporter; Provisional	99.73
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.73
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.73
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.72
PRK05122	399	major facilitator superfamily transporter; Provisi	99.72
TIGR00891	405	2A0112 putative sialic acid transporter.	99.72
PRK10504	471	putative transporter; Provisional	99.71
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.71
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.7
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.69
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.69
PRK12307	426	putative sialic acid transporter; Provisional	99.68
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.68
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.68
PRK10091	382	MFS transport protein AraJ; Provisional	99.68
TIGR00900	365	2A0121 H+ Antiporter protein.	99.67
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.67
TIGR00895	398	2A0115 benzoate transport.	99.67
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.67
PRK03893	496	putative sialic acid transporter; Provisional	99.66
PRK11663	434	regulatory protein UhpC; Provisional	99.66
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.66
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.66
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.66
PRK03699	394	putative transporter; Provisional	99.65
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.65
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.65
PRK09705	393	cynX putative cyanate transporter; Provisional	99.64
TIGR00893	399	2A0114 d-galactonate transporter.	99.64
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.63
KOG0254	513	consensus Predicted transporter (major facilitator	99.63
PRK11043	401	putative transporter; Provisional	99.63
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.62
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.62
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.62
PRK09874	408	drug efflux system protein MdtG; Provisional	99.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.61
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.61
KOG0569	485	consensus Permease of the major facilitator superf	99.61
PRK09952	438	shikimate transporter; Provisional	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.6
PRK03633	381	putative MFS family transporter protein; Provision	99.6
PRK10133	438	L-fucose transporter; Provisional	99.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.59
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.59
PLN00028	476	nitrate transmembrane transporter; Provisional	99.59
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.58
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.58
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.57
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.57
TIGR00805	633	oat sodium-independent organic anion transporter.	99.57
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.57
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.56
TIGR00898	505	2A0119 cation transport protein.	99.56
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.56
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.55
PRK15075	434	citrate-proton symporter; Provisional	99.54
PRK15011	393	sugar efflux transporter B; Provisional	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.54
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.53
PRK03893	496	putative sialic acid transporter; Provisional	99.52
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.51
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.51
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.51
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.51
PRK09952	438	shikimate transporter; Provisional	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.5
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.49
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.49
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.48
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.48
PRK03699	394	putative transporter; Provisional	99.47
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.45
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.45
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.45
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.45
PRK05122	399	major facilitator superfamily transporter; Provisi	99.44
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.44
PRK09705	393	cynX putative cyanate transporter; Provisional	99.44
TIGR00891	405	2A0112 putative sialic acid transporter.	99.43
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.42
KOG2532	466	consensus Permease of the major facilitator superf	99.41
PRK11663	434	regulatory protein UhpC; Provisional	99.41
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.41
PRK09874	408	drug efflux system protein MdtG; Provisional	99.4
PRK03545	390	putative arabinose transporter; Provisional	99.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.39
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.39
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.39
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.38
PRK15075	434	citrate-proton symporter; Provisional	99.38
PRK03633	381	putative MFS family transporter protein; Provision	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.37
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.37
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.37
PRK12382	392	putative transporter; Provisional	99.37
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.36
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.36
PRK10489	417	enterobactin exporter EntS; Provisional	99.36
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.36
PRK11010	491	ampG muropeptide transporter; Validated	99.35
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.34
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.34
PRK09528	420	lacY galactoside permease; Reviewed	99.33
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.33
TIGR00901	356	2A0125 AmpG-related permease.	99.33
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.33
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
PTZ00207	591	hypothetical protein; Provisional	99.32
PRK11902	402	ampG muropeptide transporter; Reviewed	99.31
PRK11010	491	ampG muropeptide transporter; Validated	99.3
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.3
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.29
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.28
PLN00028	476	nitrate transmembrane transporter; Provisional	99.28
PRK12307	426	putative sialic acid transporter; Provisional	99.26
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.25
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.25
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.24
PRK10504	471	putative transporter; Provisional	99.23
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.22
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.22
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.21
TIGR00900	365	2A0121 H+ Antiporter protein.	99.2
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.19
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.19
PRK10091	382	MFS transport protein AraJ; Provisional	99.18
KOG2615	451	consensus Permease of the major facilitator superf	99.18
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.18
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.16
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.16
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.16
TIGR00895	398	2A0115 benzoate transport.	99.15
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.15
PRK10133	438	L-fucose transporter; Provisional	99.14
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.14
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.14
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.13
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.12
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.11
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.11
PRK09848	448	glucuronide transporter; Provisional	99.1
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.08
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.08
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.07
KOG2533	495	consensus Permease of the major facilitator superf	99.06
PRK10429	473	melibiose:sodium symporter; Provisional	99.06
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.04
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.03
PRK10429	473	melibiose:sodium symporter; Provisional	99.03
PRK10054	395	putative transporter; Provisional	99.03
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.03
TIGR00901	356	2A0125 AmpG-related permease.	99.03
PRK09669	444	putative symporter YagG; Provisional	99.03
PF13347	428	MFS_2: MFS/sugar transport protein	99.02
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.02
PRK11902	402	ampG muropeptide transporter; Reviewed	99.01
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.01
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.01
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.0
PRK11462	460	putative transporter; Provisional	99.0
TIGR00898	505	2A0119 cation transport protein.	98.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.95
PRK11043	401	putative transporter; Provisional	98.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.92
PRK09848	448	glucuronide transporter; Provisional	98.92
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.92
PF13347	428	MFS_2: MFS/sugar transport protein	98.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.91
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.87
PRK09669	444	putative symporter YagG; Provisional	98.87
KOG2532	466	consensus Permease of the major facilitator superf	98.87
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.86
KOG0569	485	consensus Permease of the major facilitator superf	98.82
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.82
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.81
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.78
COG2211	467	MelB Na+/melibiose symporter and related transport	98.76
PRK11462	460	putative transporter; Provisional	98.71
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.66
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.65
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.64
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.6
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.59
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.57
COG2211	467	MelB Na+/melibiose symporter and related transport	98.5
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.5
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.44
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.41
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.4
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.39
COG0477	338	ProP Permeases of the major facilitator superfamil	98.33
KOG2563	480	consensus Permease of the major facilitator superf	98.26
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.26
PF12832	77	MFS_1_like: MFS_1 like family	98.25
KOG2533	495	consensus Permease of the major facilitator superf	98.24
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.24
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.22
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.2
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.18
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.11
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.05
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.05
KOG0254	513	consensus Predicted transporter (major facilitator	98.04
KOG3626	735	consensus Organic anion transporter [Secondary met	97.98
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.92
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.9
PTZ00207	591	hypothetical protein; Provisional	97.74
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.7
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.69
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.66
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.47
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.47
KOG3762	618	consensus Predicted transporter [General function	97.45
TIGR00805	633	oat sodium-independent organic anion transporter.	97.41
KOG2563	480	consensus Permease of the major facilitator superf	97.35
KOG0637	498	consensus Sucrose transporter and related proteins	97.19
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.18
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.13
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.12
PRK03612	521	spermidine synthase; Provisional	96.86
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.83
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.65
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.48
KOG2615	451	consensus Permease of the major facilitator superf	96.43
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.34
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.03
KOG3762	618	consensus Predicted transporter [General function	95.83
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.61
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.95
KOG3626	735	consensus Organic anion transporter [Secondary met	94.57
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.49
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	93.38
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.94
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	91.53
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.99
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	90.69
KOG3098	461	consensus Uncharacterized conserved protein [Funct	90.34
KOG2325	488	consensus Predicted transporter/transmembrane prot	89.69
KOG3097	390	consensus Predicted membrane protein [Function unk	89.51
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	87.35
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	85.88
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	84.27
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	83.17

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=99.97  E-value=4.2e-29  Score=238.57  Aligned_cols=283  Identities=33%  Similarity=0.534  Sum_probs=237.9

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      +++.|+++.++++.+.+|+.++||+..++..|++.++|.+...+...++.+.+.....++++++++|.|+||++++.+++
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCC----CCCCcCCc--chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513           90 TLEVLSLVMLTIQAYSKSLHPPDC----GKSSCLKG--AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (296)
Q Consensus        90 ~~~~ig~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~  163 (296)
                      +++.+|..++..+...+.+.++.|    ..+.|+..  .+...++.++.++++|.|+.+++..++.+|||++..+.++..
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999998887888877765    23456653  356789999999999999999999999999999877777777


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhhh------
Q 022513          164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVP------  237 (296)
Q Consensus       164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl------  237 (296)
                      +.++|+|+|+..++|.+++-.+..|++++.+|.++|.++.+++++++++|+.+.+.|+.++|.++|...+.+++      
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ccCCCCCCC-----CCCCCC-----Ccccccccc----------cccCCcccc-ceeeecceeeeeccchhhhhhhhc
Q 022513          238 HSLPIPFLF-----GPKSLK-----PLEMILKYT----------RHKINIYKL-KKTQSEEDYIFFSLEWSPILKSYI  294 (296)
Q Consensus       238 ~~~~~~~~~-----~~~~~~-----~~~~~l~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  294 (296)
                      |+.+.+.+.     +..+..     +.-+.+|.+          ....++|+. ..+++||+|..+++  .|+...++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~--~Pi~~~~i  347 (571)
T KOG1237|consen  272 RKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRL--LPIWLTTI  347 (571)
T ss_pred             HhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhh--hHHHHHHH
Confidence            343332221     000000     011111111          112345777 57899999999887  46665554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.94  E-value=1.6e-26  Score=212.07  Aligned_cols=192  Identities=20%  Similarity=0.385  Sum_probs=176.1

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcC----CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH----FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL   86 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~   86 (296)
                      -+|||.++.++.++++||++|||++..+..|++.+++    +|.+++..+.+.+....++.+++|||+|||++|+|+++.
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            3699999999999999999999999999999999888    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (296)
Q Consensus        87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~  166 (296)
                      .+.+++++|.+++..+..                 .....+++++.++++|.|.+++++.++++|++|+++++    |..
T Consensus        97 lGail~~iGh~~L~~~~~-----------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~  155 (498)
T COG3104          97 LGAILMAIGHLVLAISSV-----------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDG  155 (498)
T ss_pred             HHHHHHHHHHHHHhcccc-----------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCC
Confidence            999999999998876520                 12357999999999999999999999999999988854    788


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeec
Q 022513          167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ  223 (296)
Q Consensus       167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~  223 (296)
                      .|+.+|.+.|+|++++|++.+++.+++||+.+|.++++.+.++++.++.+++++...
T Consensus       156 gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         156 GFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             CccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence            999999999999999999999999999999999999999999999988888766544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.93  E-value=1.4e-24  Score=206.23  Aligned_cols=190  Identities=15%  Similarity=0.253  Sum_probs=165.1

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHH
Q 022513            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~   88 (296)
                      ..++|||.++.++..+++|++++|++..+++.|+++++|++.++++++.+.+....++.++++|+++||++||||++.++
T Consensus         8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207          8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence            34579999999999999999999999999999999999999999999999999999999999999999967999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (296)
Q Consensus        89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~  168 (296)
                      .+++.+|.+++.++..                  ....++++|.++++|.|...++..++++|+||++++    +|++.+
T Consensus        88 ~~~~~~g~~~~~~~~~------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~  145 (489)
T PRK10207         88 AIVLAIGYFMTGMSLL------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAF  145 (489)
T ss_pred             HHHHHHHHHHHHHhcc------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcch
Confidence            9999999988876531                  123466889999999999999999999999987652    257789


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY  220 (296)
Q Consensus       169 ~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~  220 (296)
                      +++|++.|+|..++|.+++++.++.||++.|+++++.+.++++.+...++.+
T Consensus       146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~  197 (489)
T PRK10207        146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV  197 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence            9999999999999999999999999999999998776666665555554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.91  E-value=5.1e-23  Score=195.05  Aligned_cols=191  Identities=16%  Similarity=0.272  Sum_probs=165.6

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH
Q 022513            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE--MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL   86 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~   86 (296)
                      ...+++|.++.+.+.+++|++++|++.++++.|++++  +|++..+++.+.+.+.++..++++++|+++||++|||+++.
T Consensus         4 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924         4 TFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            3456899999999999999999999999999999987  99999999999999999999999999999999569999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (296)
Q Consensus        87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~  166 (296)
                      ++.+++.++.+++..+.                   +...+++++++.|+|.|...++..++++|++|+++++   +|++
T Consensus        84 ~~~~~~~~g~~~~~~~~-------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~  141 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSI-------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDG  141 (475)
T ss_pred             HHHHHHHHHHHHHHhcc-------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccc
Confidence            99999999987766542                   2346778899999999999999999999999865422   2678


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCcee
Q 022513          167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYR  221 (296)
Q Consensus       167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~  221 (296)
                      .++++|.+.|+|..+||.+++++.++.||++.|.++++.++++.+.++..++.+.
T Consensus       142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            8999999999999999999999999899999999988777666666655555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.90  E-value=4.3e-22  Score=187.80  Aligned_cols=189  Identities=21%  Similarity=0.376  Sum_probs=161.1

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      +.+|||.++.++..++++++++|++..+++.|+++++|++..+++.+.+.+.+...++++++|+++||++||||++.++.
T Consensus         4 ~~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~   83 (493)
T PRK15462          4 HASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA   83 (493)
T ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            45699999999999999999999999999999999999999999999999999999999999999999449999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (296)
Q Consensus        90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~  169 (296)
                      ++..+|.+++.....                  ....++++..+.++|.|...++.+++++|+||++++    +|.+.++
T Consensus        84 il~~lg~lll~~~~~------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~  141 (493)
T PRK15462         84 LLMAIGHVVLGASEI------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFS  141 (493)
T ss_pred             HHHHHHHHHHHHhhc------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceeh
Confidence            999998766543210                  112355566677788888889999999999997642    2788999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513          170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY  220 (296)
Q Consensus       170 ~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~  220 (296)
                      ++|...|+|+.++|.+.+++.++.||+++|.++++.++++++.++..++++
T Consensus       142 i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999998887777777776655544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.89  E-value=2.3e-22  Score=195.57  Aligned_cols=195  Identities=24%  Similarity=0.390  Sum_probs=167.9

Q ss_pred             HHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 022513           29 MGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSL  108 (296)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~  108 (296)
                      ++|||+...+..|+++.+|++.+.+..+.+.+...+.+.++++|+++|+++||++++.++.+++.+|.++++++...+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999888765321111


Q ss_pred             CCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 022513          109 HPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY  188 (296)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  188 (296)
                      +           ..+....++++.++++|.|+.++++.++++||+++++   ++++.++|+++|+++|+|+++++.+.++
T Consensus        81 ~-----------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~  146 (654)
T TIGR00926        81 H-----------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPI  146 (654)
T ss_pred             c-----------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1           1233457788999999999999999999999998643   3347899999999999999999999999


Q ss_pred             hccc-------cchhHHHHHHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhhh
Q 022513          189 VFID-------QGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVP  237 (296)
Q Consensus       189 l~~~-------~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl  237 (296)
                      +++.       .+|..+|.+++++++++++++...++++...+|+++++.+..+++
T Consensus       147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi  202 (654)
T TIGR00926       147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCI  202 (654)
T ss_pred             HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Confidence            8744       369999999999999999999999998888888888877777777

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.88  E-value=4.5e-21  Score=182.88  Aligned_cols=185  Identities=17%  Similarity=0.333  Sum_probs=156.0

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~   90 (296)
                      .+++|.++.++..++++++++|++..+++.|+++++|++.++++.+.+.+.......++++|+++||++|||+++.++.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            36788899999999999999999999999999999999999988888887777777778999999994499999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~  170 (296)
                      +..++..++..+.                  .....+++++++.|+|.|...++..++++|++|++++    ++.+.+++
T Consensus        97 ~~~ig~~l~~~~~------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~  154 (500)
T PRK09584         97 VLAIGYALVAWSG------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTM  154 (500)
T ss_pred             HHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchH
Confidence            9998887766542                  1234567889999999999999999999999986542    24567788


Q ss_pred             HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcC
Q 022513          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGK  217 (296)
Q Consensus       171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~  217 (296)
                      +|.+.++|+.++|.+++++.++.||++.|.+.++.++++++.++...
T Consensus       155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~  201 (500)
T PRK09584        155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQ  201 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhH
Confidence            89999999999999999999999999999998876666665554443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.76  E-value=3.8e-17  Score=155.55  Aligned_cols=222  Identities=11%  Similarity=0.070  Sum_probs=147.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      +++.........++....+|++..++|.|+++.+|++..++........++..++.+++|+++|| +|||+++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            44544444444556677889999999999999999998887777777788888999999999999 79999988877654


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+.......                ..+...+++++++.+++.+...+....+..|.+|++.      |++..++.+
T Consensus       327 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~  384 (490)
T PRK10642        327 FVLAIPAFILIN----------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAF  384 (490)
T ss_pred             HHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHH
Confidence            443333222110                1124556777888877766666677788889999776      788888755


Q ss_pred             HHHHHHHHHHHhhhhhhcccc-chhHHHHHHHHHHHHH--HHHHHhcCCceeecC--CCCChhhhhhhhhccCCCCCCCC
Q 022513          173 FATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIG--LIALAIGKPFYRIQQ--PGESPLVRVAQVPHSLPIPFLFG  247 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~~~~~--~i~~~~~~~~~~~~~--~~~~~~~~~~~vl~~~~~~~~~~  247 (296)
                      ....+++.++|.+.+++.+.. +|+.++++..+..++.  ...+.+++|++..++  ++++..+++.++++|+..   ++
T Consensus       385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~---~~  461 (490)
T PRK10642        385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYD---NI  461 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhcccc---cc
Confidence            445666778888888887654 4665554433332222  333456777775543  122335667777766542   24


Q ss_pred             CCCCCCccccccc
Q 022513          248 PKSLKPLEMILKY  260 (296)
Q Consensus       248 ~~~~~~~~~~l~~  260 (296)
                      +.|.+|+++.++.
T Consensus       462 ~~~~~~i~~~~~~  474 (490)
T PRK10642        462 EQKIDDIDQEIAE  474 (490)
T ss_pred             cchhhhccccchh
Confidence            4566666665553

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1e-16  Score=145.86  Aligned_cols=204  Identities=17%  Similarity=0.090  Sum_probs=171.0

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHH
Q 022513            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~   88 (296)
                      .++..|..++.+.+..|.....-+.....++. +.+++|.|..++++.++.|..+..++.|+...+.|| +.||++++..
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~   84 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGL   84 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHH
Confidence            34557777777777888877777766666665 788999999999999999999999999999999999 7999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (296)
Q Consensus        89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~  168 (296)
                      ..+++++.++.+++.                   ++..+.++|++.|+..|.+++...+..+|..|+++      |++..
T Consensus        85 l~lFi~~n~l~alAp-------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Ai  139 (394)
T COG2814          85 LALFIVSNLLSALAP-------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRAL  139 (394)
T ss_pred             HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHH
Confidence            999999999988874                   46789999999999999999999999999999876      78899


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhhhcc
Q 022513          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHS  239 (296)
Q Consensus       169 ~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~  239 (296)
                      +..+.+.+++..+|..++.++.+.+|||..|+..+.+.++.++..+...|+-...+++++++.+..+.+|+
T Consensus       140 aiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~  210 (394)
T COG2814         140 ALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRR  210 (394)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcC
Confidence            99899999999999999999999999999999988888877777777777111122233455666666644

>PRK10054 putative transporter; Provisional

Probab=99.74  E-value=1e-16  Score=148.63  Aligned_cols=172  Identities=13%  Similarity=0.102  Sum_probs=142.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      .+|..+.++...++...+.+.+.++++.|+++++|++..+.++..+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence            45667777888888899988889999999999999999999999999999999999999999999 79999999988888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+++.+..                   +...+++.+.+.+.+.+...+...++.+|.+|+++      |++.+++.+
T Consensus        84 ~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~  138 (395)
T PRK10054         84 ASGFIAIPLVN-------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNY  138 (395)
T ss_pred             HHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHH
Confidence            77776665543                   24456667777777777777888888899887543      788889999


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      ...++|..++|.+++++.+ .+|+..|.+.+++.++..+
T Consensus       139 ~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i  176 (395)
T PRK10054        139 TMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLV  176 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHH
Confidence            9999999999999998864 6899999987776665543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.74  E-value=1.2e-16  Score=148.02  Aligned_cols=176  Identities=13%  Similarity=0.052  Sum_probs=143.1

Q ss_pred             CcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513            8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV   87 (296)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~   87 (296)
                      +..|..|+....+....++.....|.....++. +.+++|+++++.++.++.+..+..++.++.|+++|| +|||+++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~   90 (394)
T PRK10213         13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVIL   90 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHH
Confidence            344557776665555555555555555556655 567899999999999999999999999999999999 799999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (296)
Q Consensus        88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~  167 (296)
                      +.++..++.++...+.                   +.+.+++.|++.|++.|...+...+++.|.+|+++      |+..
T Consensus        91 ~~~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a  145 (394)
T PRK10213         91 FAVLLTLSCLLVSFAN-------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKA  145 (394)
T ss_pred             HHHHHHHHHHHHHHHC-------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHH
Confidence            9999988877765542                   45789999999999999999999999999998654      7788


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513          168 FNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       168 ~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~  210 (296)
                      .+....+.++|..++|.+++++.+..||++.|++.+++.++..
T Consensus       146 ~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999988999999988776554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.74  E-value=7.8e-17  Score=150.19  Aligned_cols=173  Identities=13%  Similarity=0.074  Sum_probs=139.3

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      ||.+|+..+.+.+..+++......+ .+....+++++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~   80 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIM   80 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHH
Confidence            4446666665555555555544433 344457899999999999999999999999999999999999 79999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (296)
Q Consensus        90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~  169 (296)
                      ++..++.+++..+.                   +...+++.|++.|++.|...+....+++|.+|+++      |++..+
T Consensus        81 ~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~  135 (412)
T TIGR02332        81 VLWGIASTATMFAT-------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANA  135 (412)
T ss_pred             HHHHHHHHHHHHhc-------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            99988888776643                   35678899999999999988888889999998543      788888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcc------ccchhHHHHHHHHHHHHH
Q 022513          170 FYLFATTLAAMIGVTAIVYVFI------DQGWWLGFLISSVATLIG  209 (296)
Q Consensus       170 ~~~~~~~~G~~i~~~~~~~l~~------~~gw~~~f~i~~~~~~~~  209 (296)
                      .++.+..+|..+++.+++++.+      ..|||+.|.+.++..++.
T Consensus       136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~  181 (412)
T TIGR02332       136 LFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVIL  181 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHH
Confidence            8888999999999999888753      369999999876665443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.74  E-value=1.2e-16  Score=147.57  Aligned_cols=174  Identities=14%  Similarity=0.039  Sum_probs=139.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      ++|...+.+....+......+.....+ +.+.+++|.++.+.++..+.+.++..++.++.|+++|| +|||+++..+.++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   83 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVL   83 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHH
Confidence            345555555555555444444333334 45778999999999999999999999999999999999 7999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..++.+....+.                   +...++++|++.|++.+...+...+++.|.+|+++      |++.++++
T Consensus        84 ~~~~~~~~~~~~-------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~  138 (390)
T PRK03545         84 FIASHVLSALAW-------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLL  138 (390)
T ss_pred             HHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHH
Confidence            888887766543                   45778899999999998888888899999998654      78888888


Q ss_pred             HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ..+.++|..++|.+++.+.+..|||+.|++.+++.++..+.
T Consensus       139 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~  179 (390)
T PRK03545        139 ATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence            88999999999999998888889999999887766554443

>PRK12382 putative transporter; Provisional

Probab=99.73  E-value=2.8e-16  Score=145.05  Aligned_cols=175  Identities=13%  Similarity=-0.035  Sum_probs=136.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      ..+.++.+....++...+.....+.++.|+.+++|.|..+.+++.+.+.++..++.++.|+++|| +||||++..+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~   91 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLAC   91 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHH
Confidence            34455555556666666666667788889999999999999999999999999999999999999 79999999988877


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+........+..           ...+...++++|++.|++.+...+...+++.|.+|+++      |++..+++.
T Consensus        92 ~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~  154 (392)
T PRK12382         92 GLAGLAYLLAAILPVS-----------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNG  154 (392)
T ss_pred             HHHHHHHHhhhccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHH
Confidence            6665433322111100           01246778999999999999888888888899988654      788888888


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA  205 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~  205 (296)
                      .+.++|..++|.+++++.+..||+..+.+..+.
T Consensus       155 ~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        155 MAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            888999999999999988888999876655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.73  E-value=4.7e-18  Score=154.79  Aligned_cols=176  Identities=12%  Similarity=0.050  Sum_probs=149.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      .++.+..+.++..+++..-|.+...+ .-.++.+|++++..+++..++.+...+..|+.|+++|| +.||+++.+|..++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIW  108 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHH
Confidence            34556666677778887777665433 34677899999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .+..+...++.                   +.+++.+.|.+.|+|.+.+.+..+++++|.||+.+      |++.++++|
T Consensus       109 ~~Av~~~~fs~-------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify  163 (493)
T KOG1330|consen  109 TLAVFASGFSN-------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFY  163 (493)
T ss_pred             HHHHHHHHHHH-------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhh
Confidence            99888877653                   46889999999999999999999999999999776      899999999


Q ss_pred             HHHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHh
Q 022513          173 FATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~  215 (296)
                      +++++|.++|.++++++.+..+ ||++|+..+++.++..++.+.
T Consensus       164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFL  207 (493)
T ss_pred             hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHh
Confidence            9999999999999988887765 999999988877665554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.73  E-value=2.1e-16  Score=142.55  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513           22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI  101 (296)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~  101 (296)
                      ...++..++.......++.++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.++..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhh
Confidence            34555566655555666658889999999999999999999999999999999999 79999999999999888555443


Q ss_pred             HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513          102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI  181 (296)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i  181 (296)
                      +.                   +...++++|++.|++.+...+...+++.|.+|+++      |++.++..+...++|..+
T Consensus        82 ~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~  136 (352)
T PF07690_consen   82 AS-------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSIL  136 (352)
T ss_dssp             HC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHH
T ss_pred             hh-------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhc
Confidence            31                   23478999999999999999999999999999765      788889999999999999


Q ss_pred             HHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       182 ~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +|.+++++.+..+|++.|++.+++.++..++
T Consensus       137 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  137 GPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999998889999999988877766553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.72  E-value=2.7e-16  Score=146.02  Aligned_cols=167  Identities=14%  Similarity=0.125  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~   97 (296)
                      +.++...++...+.+.+.+.++.|+++++|+|..+.+.+.+...+...+..+++|+++|| +|||+++..+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence            456678888899999999999999999999999999999999999999999999999999 7999999999999988877


Q ss_pred             HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (296)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (296)
                      .+....                   +.+.+++.|++.|++.+...+...+++.|.+|+++      |++..++++...++
T Consensus        92 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~  146 (400)
T PRK11646         92 TMAIAH-------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSA  146 (400)
T ss_pred             HHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence            765432                   35678889999999988888888899999988543      78888999999999


Q ss_pred             HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       178 G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      |..+||.+++++. ..+|++.|++.++..++..+
T Consensus       147 g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i  179 (400)
T PRK11646        147 GAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAA  179 (400)
T ss_pred             HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence            9999999999988 67999999887766554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.72  E-value=4.8e-16  Score=143.77  Aligned_cols=177  Identities=14%  Similarity=0.004  Sum_probs=142.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      +|.+..+....+....+.......++.|+++++|.|..+.+++.+++.++..++.++.|+++|| +||||++..+.+++.
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence            4556666777777788877777888999999999999999999999999999999999999999 799999999998887


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.+.+..+......           ...+...+++.|++.|++.+...+...+++.|.+|+++      |++..+++..
T Consensus        93 ~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~  155 (399)
T PRK05122         93 LSGLLYLLAGLLAAW-----------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGI  155 (399)
T ss_pred             HHHHHHHHhhhhhcc-----------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhh
Confidence            776655543211100           01235578899999999999999998899999988654      6778888778


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI  208 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~  208 (296)
                      +.++|..+++.+++++.+..||+..+.+..++.++
T Consensus       156 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        156 ATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            88889999999999988888999888776554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.72  E-value=4e-16  Score=143.57  Aligned_cols=175  Identities=13%  Similarity=0.150  Sum_probs=142.5

Q ss_pred             CcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513            8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV   87 (296)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~   87 (296)
                      ..++.+|+.........+.+.+..+...... ..+++++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~   82 (405)
T TIGR00891         5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVT   82 (405)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHH
Confidence            3455678877777777777777766554444 45778999999999999999999999999999999999 799999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (296)
Q Consensus        88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~  167 (296)
                      +.++..++.+++..+.                   +...+++.|++.|++.+...+...+++.|.+|+++      |+..
T Consensus        83 ~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~  137 (405)
T TIGR00891        83 SIVLFSAGTLACGFAP-------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKA  137 (405)
T ss_pred             HHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHH
Confidence            9888888877665542                   35678889999999999999999999999998654      7788


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccc--hhHHHHHHHHHHHHH
Q 022513          168 FNFYLFATTLAAMIGVTAIVYVFIDQG--WWLGFLISSVATLIG  209 (296)
Q Consensus       168 ~~~~~~~~~~G~~i~~~~~~~l~~~~g--w~~~f~i~~~~~~~~  209 (296)
                      .++++...++|..+++.+.+.+.+..+  |++.|.+.++..++.
T Consensus       138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            888888899999999988888776555  999998765544443

>PRK10504 putative transporter; Provisional

Probab=99.71  E-value=3.6e-16  Score=147.83  Aligned_cols=180  Identities=10%  Similarity=0.030  Sum_probs=144.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      +++..+.+....++.....+.+...++.+.+ ++|.+..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~   85 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLF   85 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHH
Confidence            3455677777777878777777777777664 699999999999999999999999999999999 79999999988888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.++...+.                   +...++++|++.|++.|...+...+++.|.+|+++      |++.+++++
T Consensus        86 ~~~~~~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  140 (471)
T PRK10504         86 TLGSLFCALSG-------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVT  140 (471)
T ss_pred             HHHHHHHHHhC-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            87776654432                   34678889999999999998989999999987433      678888888


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                      ...++|..++|.+++++.++.+|++.|.+......+..+......|+
T Consensus       141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999988999999998766555554444433343

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.71  E-value=1.9e-16  Score=156.10  Aligned_cols=175  Identities=8%  Similarity=0.064  Sum_probs=136.2

Q ss_pred             hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513           34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (296)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~  113 (296)
                      +...+.+++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++++++++..++.+++.++.          
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~----------  253 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ----------  253 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            34455567778899999999999999999999999999999999 7999999999988888877766543          


Q ss_pred             CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--
Q 022513          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI--  191 (296)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~--  191 (296)
                               +...++++|++.|+|.|+..+..+++++|.+|.+.      |+..++++.....+|.++++.++.++..  
T Consensus       254 ---------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       254 ---------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     35678899999999999999999999999998543      7788888888888888888766544332  


Q ss_pred             -----------ccchhHHHHHHHHHHHHHH--HHHHhcCCceeecCCCCChhhhhhhhh
Q 022513          192 -----------DQGWWLGFLISSVATLIGL--IALAIGKPFYRIQQPGESPLVRVAQVP  237 (296)
Q Consensus       192 -----------~~gw~~~f~i~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~vl  237 (296)
                                 ..+||+.+++.++..++.+  ..+++++|+|...+.+.   +++.+++
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~---~eA~~iL  374 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKH---DEAWMIL  374 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCH---HHHHHHH
Confidence                       2368888877665544433  33467889988766553   4444444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.70  E-value=4.8e-16  Score=148.25  Aligned_cols=177  Identities=12%  Similarity=0.013  Sum_probs=141.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      .|..+..+.+..++..+....+...+|. +.+++|.+..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            3455555566666666665555555555 567899999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+++..+.                   +...++++|++.|+|.++..+.....+.+.+++++     +|++.++++.
T Consensus        82 ~~~~~~~~~a~-------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~  137 (495)
T PRK14995         82 GLASLAAAFSP-------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWA  137 (495)
T ss_pred             HHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHH
Confidence            99988877543                   45788999999999999887777777777764321     2788889999


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      ...++|..+||.+++++.++.+||+.|++...+.++..++...
T Consensus       138 ~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~  180 (495)
T PRK14995        138 AVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTAR  180 (495)
T ss_pred             HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876655544443333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.69  E-value=9.1e-16  Score=146.54  Aligned_cols=193  Identities=13%  Similarity=0.079  Sum_probs=136.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV   87 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~   87 (296)
                      +++.+..+....+.+.+....+....+. +..+     .+.+..+.+++.+.+.++..++.+++|+++|| +|||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHH
Confidence            3444444444445555443333222332 3322     34556677888999999999999999999999 799999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (296)
Q Consensus        88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~  167 (296)
                      +.++..++.++...+....             ...+...++++|++.|++.|+..+..+.+++|.+|++.      |++.
T Consensus        92 ~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~  152 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSS-------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAM  152 (502)
T ss_pred             HHHHHHHHHHHHHHccCcc-------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHH
Confidence            9999998887766542100             01125679999999999999999999999999999765      7888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcc-----------------------ccchhHHHHHHHHHHHHHH--HHHHhcCCceee
Q 022513          168 FNFYLFATTLAAMIGVTAIVYVFI-----------------------DQGWWLGFLISSVATLIGL--IALAIGKPFYRI  222 (296)
Q Consensus       168 ~~~~~~~~~~G~~i~~~~~~~l~~-----------------------~~gw~~~f~i~~~~~~~~~--i~~~~~~~~~~~  222 (296)
                      .++.+....+|..+++.+..++..                       ..+||+.|.+.++..++..  ..+++++|+|..
T Consensus       153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~  232 (502)
T TIGR00887       153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA  232 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            888888888888888776544321                       2479999987665544332  345689999876


Q ss_pred             cCCC
Q 022513          223 QQPG  226 (296)
Q Consensus       223 ~~~~  226 (296)
                      .+.+
T Consensus       233 ~~~~  236 (502)
T TIGR00887       233 DVAK  236 (502)
T ss_pred             HhCc
Confidence            5554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.69  E-value=1.6e-15  Score=140.15  Aligned_cols=173  Identities=12%  Similarity=0.090  Sum_probs=134.6

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      |++.+|..+.+....++.........+.++ ++.+++|.|+.+.+++.+.+.++..++.++.|+++|| +|||+++.++.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~   80 (394)
T PRK11652          3 RQRNVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGM   80 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHH
Confidence            344667676666666666655444444444 4568899999999999999999999999999999999 79999999998


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (296)
Q Consensus        90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~  169 (296)
                      ++..++.++...+.                   +...+++.|++.|++.+...+....+..|.++.++      ++...+
T Consensus        81 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  135 (394)
T PRK11652         81 SIFILGTLVALFAH-------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANS  135 (394)
T ss_pred             HHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHH
Confidence            88888877665432                   35678889999999988777777777788776432      566777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513          170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       170 ~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      .+..+..+|..++|.+++++.+..+|++.|++.++..++.
T Consensus       136 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~  175 (394)
T PRK11652        136 LLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            7778888999999999998888889999998876654433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.68  E-value=1.8e-15  Score=141.00  Aligned_cols=172  Identities=9%  Similarity=0.082  Sum_probs=140.1

Q ss_pred             cCcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH
Q 022513            7 GIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL   86 (296)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~   86 (296)
                      +...+.+++.........+.+.+..+.. .+...++.+++|.+..+.++..+++.++..++.++.|+++|| +|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~   87 (426)
T PRK12307         10 SEITRPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMM   87 (426)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHH
Confidence            3344455666665555666666655443 455566788999999999999999999999999999999999 79999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (296)
Q Consensus        87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~  166 (296)
                      ++.++..++.+++..+.                   +...++++|++.|+|.|...+....++.|.+|+++      |++
T Consensus        88 ~~~~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~  142 (426)
T PRK12307         88 WSIVAYSVGTGLSGLAS-------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSK  142 (426)
T ss_pred             HHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhH
Confidence            99999998887766653                   35678999999999999999999999999998654      677


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHH
Q 022513          167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA  205 (296)
Q Consensus       167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~  205 (296)
                      ..++++.+..+|..+++.+.+++.+..+|++.|++....
T Consensus       143 ~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            888888889999999998888888888999999875443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.68  E-value=2e-15  Score=140.84  Aligned_cols=152  Identities=14%  Similarity=0.115  Sum_probs=124.1

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCc
Q 022513           42 FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG  121 (296)
Q Consensus        42 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (296)
                      +.+++|.+..+.++.++++.++..++.+++|+++|| +|||+++..+.++..++.+++..+.                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            567899999999999999999999999999999999 7999999999988888877766542                  


Q ss_pred             chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHH
Q 022513          122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLI  201 (296)
Q Consensus       122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i  201 (296)
                       +...++++|+++|++.+...+...+++.|.+|+++      +++.++.+....++|..++|.+++++.+..||++.|++
T Consensus       103 -~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        103 -SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence             45678999999999988666666788889988654      56677777888899999999999888888899999998


Q ss_pred             HHHHHHHHHHHHHhcCCc
Q 022513          202 SSVATLIGLIALAIGKPF  219 (296)
Q Consensus       202 ~~~~~~~~~i~~~~~~~~  219 (296)
                      .++..+++.+..+...|+
T Consensus       176 ~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        176 IAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            877666555443333333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.68  E-value=1.8e-15  Score=138.47  Aligned_cols=175  Identities=15%  Similarity=0.088  Sum_probs=139.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      +++.++.+.+..+....+.....+.+| .+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence            344455555555555555544444444 4677899999999999999999999999999999999 79999999999888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+++..+.                   +...+++.|++.|++.+...+...+++.|.+|+++      |++.++..+
T Consensus        81 ~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  135 (385)
T TIGR00710        81 ALSSLGLALSN-------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILM  135 (385)
T ss_pred             HHHHHHHHHHc-------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHH
Confidence            88877765542                   35678889999999999999999999999998543      788888888


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~  214 (296)
                      ....+|..+++.+++++.+..+|+..|.+.++..++..+..+
T Consensus       136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (385)
T TIGR00710       136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIF  177 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999988888999999887766555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.68  E-value=1.6e-15  Score=139.79  Aligned_cols=171  Identities=12%  Similarity=0.085  Sum_probs=139.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +.++.+....+......+...+.++. +.+++|.+.++.++..+.+.++..++.++.|+++|| +|||+++.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence            45566666777777766666666655 567899999999999999999999999999999999 7999999999999988


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +.+++..+.                   +.+.+++.|++.|++.|...+...+++.|.+|+++      |++.++.+..+
T Consensus        81 ~~~l~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  135 (382)
T PRK10091         81 GNAMFTLSS-------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSG  135 (382)
T ss_pred             HHHHHHHhC-------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHH
Confidence            887766542                   45788899999999999887888888888887543      66777777788


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ..+|..+++.+++++.+..+||+.|.+.++..++..+.
T Consensus       136 ~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        136 MTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            89999999999999888889999999887765544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.67  E-value=1.5e-15  Score=137.46  Aligned_cols=171  Identities=12%  Similarity=0.070  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (296)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~   99 (296)
                      ++...++..++.......++.|.. +++.+..+.+++.++..++..++.++.|+++|| +|||+++..+.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHH
Confidence            344555666665555566666665 578999999999999999999999999999999 799999999988887777666


Q ss_pred             HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (296)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~  179 (296)
                      .......              ..+...++++|++.|++.+...+...++++|.+|+++      |++.+++.+...++|.
T Consensus        82 ~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~  141 (365)
T TIGR00900        82 PFVALLG--------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFY  141 (365)
T ss_pred             HHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHH
Confidence            5543211              1246788899999999999999999999999998543      7888899999999999


Q ss_pred             HHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      .++|.+++++.+..+|++.|++.++..++..+.
T Consensus       142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900       142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999988889999998877655554433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.67  E-value=2.1e-15  Score=139.73  Aligned_cols=172  Identities=16%  Similarity=0.153  Sum_probs=139.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      .+|..+....+..+++....+......+ .+.+++|.++.+.+++.+...++..++.++.|+++|| +|||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Confidence            4566666666677777776655554444 4567899999999999999999999999999999999 7999999999888


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..++.+++..+.                   +...+++.|++.|++.+...+...+++.|.+|+++      |++..+++
T Consensus        90 ~~~~~~~~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~  144 (406)
T PRK11551         90 FGLFSLATAQAW-------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLM  144 (406)
T ss_pred             HHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            877766555432                   35678889999999999988999999999998554      78888888


Q ss_pred             HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~  210 (296)
                      +...++|..+++.++..+.+..+|++.|++.+++.++..
T Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (406)
T PRK11551        145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLV  183 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence            889999999999888888888899999988766544433

>TIGR00895 2A0115 benzoate transport

Probab=99.67  E-value=1.6e-15  Score=138.92  Aligned_cols=170  Identities=15%  Similarity=0.111  Sum_probs=134.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      .+|+.+.......+......+ ......+++.+++|.+..+.+++.+...++..++.++.|+++|| +|||+++..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~   91 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILL   91 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHH
Confidence            345554444444455544443 33444556778899999999999999999999999999999999 7999999999888


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..++.+++....                   +...+++.+++.|++.+...+...++++|.+|+++      |++..+++
T Consensus        92 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~  146 (398)
T TIGR00895        92 FSVFTLLCALAT-------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLM  146 (398)
T ss_pred             HHHHHHHHHHcc-------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhH
Confidence            887776655432                   34678889999999999999999999999998544      78888888


Q ss_pred             HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHH
Q 022513          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI  208 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~  208 (296)
                      +....+|..+++.+.+++.+..+|+..|.+.+++.++
T Consensus       147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  183 (398)
T TIGR00895       147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL  183 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHH
Confidence            8899999999999999998888999988877544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.67  E-value=1.6e-15  Score=143.60  Aligned_cols=169  Identities=8%  Similarity=0.064  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~   97 (296)
                      ..+....+...+..... ....+.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHH
Confidence            33444455555554333 344455678899999999999999999999999999999999 7999999999999988887


Q ss_pred             HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (296)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (296)
                      ++..+.                   +...++++|++.|++.+...+...+++.|.+|+++      |++..+.++....+
T Consensus        83 ~~~~~~-------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~  137 (485)
T TIGR00711        83 LCGVAP-------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLV  137 (485)
T ss_pred             HHhCcC-------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence            765432                   35678899999999999999999999999998543      78888888889999


Q ss_pred             HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513          178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       178 G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      |..++|.+++++.++.+|++.|++.+.+.++..+..
T Consensus       138 g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~  173 (485)
T TIGR00711       138 APALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA  173 (485)
T ss_pred             HhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence            999999999999999999999988766555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.66  E-value=2.8e-15  Score=142.51  Aligned_cols=175  Identities=13%  Similarity=0.145  Sum_probs=140.7

Q ss_pred             CcccCcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH
Q 022513            4 KVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA   83 (296)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~   83 (296)
                      |..+..++.+|+.+..+....+...+..... ..+..++.+++|++..+.++..+.+.++..++.+++|+++|| +|||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~   86 (496)
T PRK03893          9 PWYRHLNRAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRL   86 (496)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHH
Confidence            3344445556676666555556666655444 444556778999999999999999999999999999999999 79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513           84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (296)
Q Consensus        84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~  163 (296)
                      ++.++.++..++.+++....                   +...+++.|++.|++.++..+...+++.|.+|+++      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------  141 (496)
T PRK03893         87 AMVISIVLFSVGTLACGFAP-------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------  141 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence            99999988888887766542                   35678899999999999988999999999998543      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHH
Q 022513          164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA  205 (296)
Q Consensus       164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~  205 (296)
                      |+...+.++...++|..+++.+.+++.+..+|++.|.+.++.
T Consensus       142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            677888888889999999999999998889999998875443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.66  E-value=4.6e-15  Score=139.17  Aligned_cols=160  Identities=11%  Similarity=0.060  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ  102 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~  102 (296)
                      ..++..+..+.....++. +.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.+++..+
T Consensus        31 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~  108 (434)
T PRK11663         31 GYALFYFTRKSFNAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFS  108 (434)
T ss_pred             HHHHHHHhhhhHHHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHH
Confidence            333333333344445554 456799999999999999999999999999999999 799999999999888887766554


Q ss_pred             hhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 022513          103 AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG  182 (296)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~  182 (296)
                      .                   +...+++.|++.|++.|...+...++++|++|+++      |++..++++.+.++|..++
T Consensus       109 ~-------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~  163 (434)
T PRK11663        109 S-------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALI  163 (434)
T ss_pred             h-------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence            3                   35677788999999998888888999999998544      7888899999999999999


Q ss_pred             HhhhhhhccccchhHHHHHHHHHHHHH
Q 022513          183 VTAIVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       183 ~~~~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      +.+.+++.+..+||+.|.+.++..++.
T Consensus       164 ~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        164 PLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            999999988899999998877654433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.66  E-value=3.9e-15  Score=138.09  Aligned_cols=174  Identities=16%  Similarity=0.142  Sum_probs=131.5

Q ss_pred             CchhHHHHHHHHHHHHHHH---HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGF---IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      +.+.++..+...+.+...+   ....+.++. +.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHH
Confidence            3444454444444444333   333334443 557899999999999999999999999999999999 79999999998


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (296)
Q Consensus        90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~  169 (296)
                      .+..++.++...+.                   +...+++.|++.|++.+...+...+.+.|.+|+++      |.+..+
T Consensus        86 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~  140 (406)
T PRK15402         86 AFFILTCLAILLAQ-------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITA  140 (406)
T ss_pred             HHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHH
Confidence            88888777655432                   34678889999999998887888889999988643      456666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513          170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       170 ~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      +.+....+|..++|.+++++.++.+|++.|++.+++.++..+..
T Consensus       141 ~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        141 LMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            66666778889999999988888899999988777665554433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.66  E-value=5.7e-15  Score=138.38  Aligned_cols=168  Identities=16%  Similarity=0.159  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcC---CChhhHHHHHHHH---HHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMH---FDIAGASNTLTNF---FGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~---~s~~~a~~~~~~~---~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      ..+++..... ...++..++.++++   .+..+.+.....+   .++..++.+++|+++|| +|||+++..+.+++.++.
T Consensus        30 ~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~  107 (432)
T PRK10406         30 GNLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGS  107 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH
Confidence            3555555543 35566677888874   4454433333333   34445899999999999 799999999999999988


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      ++..++.+....           ...+...+++.|+++|+|.|+..+...++++|.+|+++      |+...+..+.+.+
T Consensus       108 ~~~~~~~~~~~~-----------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~  170 (432)
T PRK10406        108 LVIACLPGYETI-----------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLI  170 (432)
T ss_pred             HHHhhcCCchhH-----------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHH
Confidence            877664321100           00123468899999999999999999999999999765      6777777777778


Q ss_pred             HHHHHHHhhhhhhc--------cccchhHHHHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVF--------IDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       177 ~G~~i~~~~~~~l~--------~~~gw~~~f~i~~~~~~~~  209 (296)
                      .|..+++.+...+.        ..+|||++|.+.++..++.
T Consensus       171 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        171 GGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            88777766544332        2579999998876655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.66  E-value=3.2e-15  Score=137.36  Aligned_cols=149  Identities=12%  Similarity=0.052  Sum_probs=115.8

Q ss_pred             HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  115 (296)
                      ....+.+++++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+......+.+ .....            
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~------------   76 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDP------------   76 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHh------------
Confidence            334455678999999999999999999999999999999999 6999887655544444322 11111            


Q ss_pred             CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccch
Q 022513          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGW  195 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw  195 (296)
                            .+...++++|++.|+|.|.. .+.....+|.+|+++      |++..+..+.+..+|..+++.+++++.++.||
T Consensus        77 ------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gW  143 (368)
T TIGR00903        77 ------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGL  143 (368)
T ss_pred             ------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence                  24578999999999999864 455555689988543      78889999999999999999999999888999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 022513          196 WLGFLISSVATLIGLI  211 (296)
Q Consensus       196 ~~~f~i~~~~~~~~~i  211 (296)
                      |+.|.+.+++.++..+
T Consensus       144 r~~f~~~~~l~~~~~~  159 (368)
T TIGR00903       144 QLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999886665544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03699 putative transporter; Provisional

Probab=99.65  E-value=1.4e-14  Score=134.01  Aligned_cols=173  Identities=14%  Similarity=0.154  Sum_probs=135.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      +++|..+...+..++.....+.....++. +.+++|+|.++.+++.+.+.++..++.+++|+++|| +|||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence            45666666556666665655555555555 667899999999999999999999999999999999 7999999999888


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..++.++...+.                   +...+++.|++.|++.|...+...+++.|.+|+++      |+...+..
T Consensus        82 ~~i~~~l~~~~~-------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~  136 (394)
T PRK03699         82 MILAVAGLMFSH-------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFT  136 (394)
T ss_pred             HHHHHHHHHHcc-------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHH
Confidence            888877665532                   35678899999999999888888899999997644      66776666


Q ss_pred             HHHHHHHHHHHHhhhhhhc-cccchhHHHHHHHHHHHHHHH
Q 022513          172 LFATTLAAMIGVTAIVYVF-IDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~-~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      +....+|+.++|.+.+++. +..+||+.|.+.+++.++..+
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        137 DSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            6777888888888887765 457999999887766554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.65  E-value=2.5e-15  Score=142.13  Aligned_cols=150  Identities=13%  Similarity=0.100  Sum_probs=116.3

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCCCcCCcchH
Q 022513           46 MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS-KSLHPPDCGKSSCLKGAIA  124 (296)
Q Consensus        46 l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  124 (296)
                      ++.++.+.+++.+.+.++..++++++|+++|| +|||+++.++.+++.++.+....+... ....        ..+....
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~--------~~~~~~~  120 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIG--------PDNTGYV  120 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhcccccccc--------ccchhHH
Confidence            38888999999999999999999999999999 799999999999988887766543210 0000        0011234


Q ss_pred             HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc--------cccchh
Q 022513          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF--------IDQGWW  196 (296)
Q Consensus       125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~--------~~~gw~  196 (296)
                      ..++++|++.|++.|+..+..+++++|.+|+++      |+...+.+..+..+|..+++.++..+.        +..|||
T Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr  194 (479)
T PRK10077        121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWR  194 (479)
T ss_pred             HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChH
Confidence            677899999999999999999999999999654      788888888888889888876654332        356899


Q ss_pred             HHHHHHHHHHHHHH
Q 022513          197 LGFLISSVATLIGL  210 (296)
Q Consensus       197 ~~f~i~~~~~~~~~  210 (296)
                      +.|++.++..++..
T Consensus       195 ~~f~~~~~~~~~~~  208 (479)
T PRK10077        195 YMFASEAIPALLFL  208 (479)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988766554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.65  E-value=7.7e-15  Score=133.66  Aligned_cols=159  Identities=11%  Similarity=0.033  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      .+......+......+...+.++.++++++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence            3444445555555666666777767999999999999999999999999999999999999 799999999999998888


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +++..+.                  .+...++++|++.|++.+.. +...++++|.+|+++      |+...+++....+
T Consensus        82 ~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~  136 (366)
T TIGR00886        82 LWAGLAV------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGN  136 (366)
T ss_pred             HHHHHHh------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhH
Confidence            7766542                  03567888999999986644 556788999998654      6777777776666


Q ss_pred             HHHHHHHhhhhhhcc----------ccchhHHHHH
Q 022513          177 LAAMIGVTAIVYVFI----------DQGWWLGFLI  201 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~----------~~gw~~~f~i  201 (296)
                      +|..+++.+.+.+..          ..+|++.|++
T Consensus       137 ~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       137 MGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            777666666554432          2479998843

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.64  E-value=6.8e-15  Score=136.23  Aligned_cols=151  Identities=12%  Similarity=0.136  Sum_probs=124.1

Q ss_pred             HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 022513           30 GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH  109 (296)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~  109 (296)
                      .++.+...+| .+.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+..+..++.++..+++      
T Consensus        24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~------   95 (393)
T PRK09705         24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP------   95 (393)
T ss_pred             hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc------
Confidence            3344444444 4778999999999999999999999999999999999 7999999999999999998877653      


Q ss_pred             CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513          110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  189 (296)
                                   ++..++++|++.|+|.+...+..+..+.|.+| ++      |+...+.+..+.++|..+++.+++++
T Consensus        96 -------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l  155 (393)
T PRK09705         96 -------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWL  155 (393)
T ss_pred             -------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         34578899999999999988898999999886 32      67777888888889999999888888


Q ss_pred             cccc-chhHHHHHHHHHHHH
Q 022513          190 FIDQ-GWWLGFLISSVATLI  208 (296)
Q Consensus       190 ~~~~-gw~~~f~i~~~~~~~  208 (296)
                      .++. +||..+.+.++..++
T Consensus       156 ~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        156 VQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHhcCCHHHHHHHHHHHHHH
Confidence            7764 899877655444333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.64  E-value=4.2e-15  Score=135.45  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=129.1

Q ss_pred             hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 022513           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (296)
Q Consensus        37 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~  116 (296)
                      ...+++.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.+++..+.             
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~-------------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG-------------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence            33455788999999999999999999999999999999999 7999999999988888877766542             


Q ss_pred             CcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchh
Q 022513          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWW  196 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~  196 (296)
                            +...++++|++.|++.+...+...++++|.+|+++      |++.+++.+...++|..+++.+.+++.+..+|+
T Consensus        81 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  148 (399)
T TIGR00893        81 ------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ  148 (399)
T ss_pred             ------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCch
Confidence                  35678899999999999999999999999998543      788889989999999999999999888888999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 022513          197 LGFLISSVATLIGLIAL  213 (296)
Q Consensus       197 ~~f~i~~~~~~~~~i~~  213 (296)
                      +.|.+.++..++..+..
T Consensus       149 ~~~~~~~~~~~~~~~~~  165 (399)
T TIGR00893       149 WAFIIEGVLGIIWGVLW  165 (399)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99988776655544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.63  E-value=5.5e-15  Score=134.39  Aligned_cols=150  Identities=11%  Similarity=0.052  Sum_probs=125.4

Q ss_pred             hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 022513           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (296)
Q Consensus        37 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~  116 (296)
                      ...+++.+++|++..+.+++.+...++..++.+++|+++|| +|||+++.++.++..++.+++..+.             
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-------------   81 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST-------------   81 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence            33457888999999999999999999999999999999999 7999999999999888887766543             


Q ss_pred             CcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH-hhhhhhccccch
Q 022513          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV-TAIVYVFIDQGW  195 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~~~~~l~~~~gw  195 (296)
                            +...+++.|++.|++.+...+...++++|.+|+++      |++..++.+.+.++|..+++ .+...+.+..+|
T Consensus        82 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  149 (379)
T TIGR00881        82 ------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW  149 (379)
T ss_pred             ------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence                  35678899999999999999999999999998654      67777888888899999998 466666677899


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 022513          196 WLGFLISSVATLIGLIA  212 (296)
Q Consensus       196 ~~~f~i~~~~~~~~~i~  212 (296)
                      ++.|.+.+++.++..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~  166 (379)
T TIGR00881       150 HWVFIVPGIIAIIVSLI  166 (379)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99998877665544333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.63  E-value=1.5e-14  Score=138.65  Aligned_cols=161  Identities=16%  Similarity=0.194  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHH
Q 022513           52 GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSL  131 (296)
Q Consensus        52 ~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (296)
                      +.+++.+...+++.++.+++|+++|+ +|||++++++.+++.+|.+++..+.                   +..++++||
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~-------------------~~~~l~~GR  149 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP-------------------SWYQLIVGR  149 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHH
Confidence            34799999999999999999999999 7999999999999999999988774                   467899999


Q ss_pred             HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc--cchhHHHHHHHHH---H
Q 022513          132 YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--QGWWLGFLISSVA---T  206 (296)
Q Consensus       132 ~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--~gw~~~f~i~~~~---~  206 (296)
                      ++.|+|.|+.....+.+++|..|++.      |+...+.++...++|..++.. .++...+  .+||..+.+..+.   .
T Consensus       150 ~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~  222 (513)
T KOG0254|consen  150 ILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC-INYGTSKVYAGWRIPLGLALIPAVIL  222 (513)
T ss_pred             HHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999998765      899999999999999999854 4444333  4899777755443   3


Q ss_pred             HHHHHHHHhcCCceeecCCCCChhhhhhhhhccC
Q 022513          207 LIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSL  240 (296)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~  240 (296)
                      .+. ..+.+++|+|..++.+.+..++..+.++..
T Consensus       223 ~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~  255 (513)
T KOG0254|consen  223 ALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGL  255 (513)
T ss_pred             HHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCC
Confidence            333 455669999998866655555555555553

>PRK11043 putative transporter; Provisional

Probab=99.63  E-value=1.9e-14  Score=133.17  Aligned_cols=163  Identities=17%  Similarity=0.195  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhHHhHHHH--hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513           24 SALENMGFIANGISMVLY--FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI  101 (296)
Q Consensus        24 ~~~~~~~~~~~~~~l~~y--l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~  101 (296)
                      ......++.+...++|.+  +.+++|.+..+.++..+++.++..++.+++|+++|| +|||+++..+.++..++.++...
T Consensus        12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445543  678999999999999999999999999999999999 79999999998888877766554


Q ss_pred             HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513          102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI  181 (296)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i  181 (296)
                      +.                   +...+++.|++.|++.+...+...+++.|.+|+++      +++.++..+...++|..+
T Consensus        91 ~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  145 (401)
T PRK11043         91 VE-------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPAL  145 (401)
T ss_pred             hc-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHH
Confidence            32                   35678889999999988777777788899988543      455666666677889999


Q ss_pred             HHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       182 ~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +|.+++++.+..+|++.|.+.+++.++..+.
T Consensus       146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  176 (401)
T PRK11043        146 APLLGAWLLNHFGWQAIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            9999999988899999998877665554433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.62  E-value=2.2e-14  Score=130.99  Aligned_cols=167  Identities=14%  Similarity=0.054  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH-HHHHHHHHHHHHH
Q 022513           22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV-FGTLEVLSLVMLT  100 (296)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~-~~~~~~ig~~~~~  100 (296)
                      +..++...+.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++|| +||||.++. +.++..++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHH
Confidence            34666777777778889999999999999999999999999999999999999999 799887655 4444444544443


Q ss_pred             HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 022513          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM  180 (296)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~  180 (296)
                      .+.                   +...+++.|++.+.+.+...+...++..|..|++.    +.+....+..+...++|..
T Consensus        83 ~~~-------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~  139 (375)
T TIGR00899        83 WNR-------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWV  139 (375)
T ss_pred             hcc-------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHH
Confidence            321                   34567777888877777777777777778765332    1122234556667889999


Q ss_pred             HHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       181 i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ++|.+++++.+..+||+.|++.+++.++..+.
T Consensus       140 ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~  171 (375)
T TIGR00899       140 IGPPLAFWLALGFGFTVMFLTAALAFVLCGVL  171 (375)
T ss_pred             HhhhHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999999988889999999887765554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.62  E-value=1e-14  Score=132.53  Aligned_cols=149  Identities=17%  Similarity=0.131  Sum_probs=122.1

Q ss_pred             HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  115 (296)
                      ..+.+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.+++..+.            
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~------------   89 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD------------   89 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH------------
Confidence            445567888999999999999999999999999999999999 7999999999999999887776653            


Q ss_pred             CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccch
Q 022513          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGW  195 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw  195 (296)
                             +...++++|.+.|++.+...+.......|.+|+ +      |+...+++..+.++|..+++.+.+.+.+..+|
T Consensus        90 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (377)
T TIGR00890        90 -------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLITSVINLEGV  155 (377)
T ss_pred             -------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccH
Confidence                   456788999999999988777777778888763 2      67777888888888887766666666667799


Q ss_pred             hHHHHHHHHHHHHHHH
Q 022513          196 WLGFLISSVATLIGLI  211 (296)
Q Consensus       196 ~~~f~i~~~~~~~~~i  211 (296)
                      |+.|.+.+++.++..+
T Consensus       156 ~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890       156 PAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999987776555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.62  E-value=3.6e-14  Score=132.28  Aligned_cols=170  Identities=16%  Similarity=0.106  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      ++.+....+...+. +++...+.+.+++++|++..+.+++.+.+.++..++.++.|++.|| +|||+++.++.+++.++.
T Consensus         5 ~~~~~~~f~~~G~~-~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFA-NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence            34444444444444 3555555567789999999999999999999999999999999999 799999999999999998


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +++..+..                ..++..++++|++.|+|.|...+..++++.+..|+++      +++..+..+...+
T Consensus        83 ~l~~~~~~----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  140 (410)
T TIGR00885        83 FLFWPAAE----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNP  140 (410)
T ss_pred             HHHHHHHh----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHH
Confidence            77544321                1246788899999999999999999999999887554      4555667777788


Q ss_pred             HHHHHHHhhhhhhcc--------------------------ccchhHHHHHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFI--------------------------DQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~--------------------------~~gw~~~f~i~~~~~~~~~  210 (296)
                      +|..++|.+.+.+..                          ..+||++|.+.+++.++..
T Consensus       141 lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       141 FGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877765521                          2469999987776554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.62  E-value=4e-14  Score=130.95  Aligned_cols=173  Identities=15%  Similarity=0.035  Sum_probs=132.2

Q ss_pred             CCchh-HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhh-----HHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHH
Q 022513           12 GGFRA-CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAG-----ASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC   85 (296)
Q Consensus        12 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-----a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i   85 (296)
                      .+|++ ...+....++...++......++.|++ ++|.+..+     .+.+.++..++..++.++.|+++|| +|||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~   87 (408)
T PRK09874         10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIML   87 (408)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHH
Confidence            34544 444445667777777777778888875 58887654     3677788888899999999999999 7999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhh
Q 022513           86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA  165 (296)
Q Consensus        86 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~  165 (296)
                      ..+.++..++.+++....                   +...+++.|++.|++.+ ..+....++.|.+|+++      |+
T Consensus        88 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~  141 (408)
T PRK09874         88 LRSALGMGIVMVLMGLAQ-------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SG  141 (408)
T ss_pred             HHHHHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hh
Confidence            998888887776655432                   35678889999998755 45666778888887543      67


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          166 SYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       166 ~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +..+.++...++|..++|.+.+.+.+..+|++.|.+.+++.++..+.
T Consensus       142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (408)
T PRK09874        142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV  188 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            77888888889999999999999888889999998877765554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.61  E-value=3.7e-14  Score=127.38  Aligned_cols=165  Identities=19%  Similarity=0.191  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (296)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~   99 (296)
                      +....+....+.+.....++.|. +++|.+..+.++..+...++..++.++.|+++|| +|||+.+.++.++..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHH
Confidence            44556667777766767777766 5679999999999999999999999999999999 799999999999998888776


Q ss_pred             HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (296)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~  179 (296)
                      ....                   +...+++.|++.|++.+...+...++..|.+|+++      |++.+++.+...++|.
T Consensus        82 ~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~  136 (352)
T cd06174          82 AFAS-------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGA  136 (352)
T ss_pred             HHhc-------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHH
Confidence            6542                   35678899999999999999999999999999754      7888899999999999


Q ss_pred             HHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      .+++.+.+.+.+..+|++.+.+.++..++..+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (352)
T cd06174         137 LLGPLLGGLLAESLGWRWLFLILAILGLLLAL  168 (352)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999998888899999887766555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.61  E-value=3.5e-14  Score=131.10  Aligned_cols=166  Identities=13%  Similarity=0.165  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513           19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM   98 (296)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~   98 (296)
                      ...+..+....+.......+|. +.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+.+..+.++..++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHH
Confidence            3344445555554444445554 567799999999999999999999999999999999 79999999999888888776


Q ss_pred             HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (296)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G  178 (296)
                      +..+.                   +...++++|++.|++.+...+...+++.|.+|+++      |++..+..+...++|
T Consensus        85 ~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~  139 (392)
T PRK10473         85 CSLAE-------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCII  139 (392)
T ss_pred             HHHhC-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence            65432                   34567889999999999888888999999998544      788888888888899


Q ss_pred             HHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       179 ~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      ..++|.+++.+.+..+|++.|++.+++.++..+
T Consensus       140 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~  172 (392)
T PRK10473        140 PVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL  172 (392)
T ss_pred             HHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence            999999988887788999998887765554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.61  E-value=1.2e-14  Score=136.12  Aligned_cols=139  Identities=15%  Similarity=0.222  Sum_probs=116.2

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHH
Q 022513           48 FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYF  127 (296)
Q Consensus        48 ~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (296)
                      .+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++......                ..+...+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~  130 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF----------------ALSVEML  130 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHH
Confidence            337899999999999999999999999999 79999999999999888877655421                1234578


Q ss_pred             HHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh---hhhccccchhHHHHHHHH
Q 022513          128 YGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI---VYVFIDQGWWLGFLISSV  204 (296)
Q Consensus       128 ~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~---~~l~~~~gw~~~f~i~~~  204 (296)
                      +++|++.|+|.|...+...++++|.+|+++      |+...++++.+.++|..+++.++   ....+..+||+.|++.++
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~  204 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI  204 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence            899999999999999999999999998665      78888888889999999999888   666667899999998655


Q ss_pred             HHHHH
Q 022513          205 ATLIG  209 (296)
Q Consensus       205 ~~~~~  209 (296)
                      ..++.
T Consensus       205 ~~~~~  209 (481)
T TIGR00879       205 PAGLL  209 (481)
T ss_pred             HHHHH
Confidence            44443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.61  E-value=1.5e-15  Score=141.97  Aligned_cols=166  Identities=14%  Similarity=0.196  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHH
Q 022513           54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYL  133 (296)
Q Consensus        54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  133 (296)
                      +.+++++.+++++|..++|+++|| +|||.++.++.++..++.+++..+...                .+..++++||++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~----------------~~~e~li~GR~i  125 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA----------------PSFEMLILGRLI  125 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHH
Confidence            556888999999999999999999 799999999999998888887776432                346789999999


Q ss_pred             HHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh-hhhc-cccchhHHHHHHHHHHH--HH
Q 022513          134 YSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI-VYVF-IDQGWWLGFLISSVATL--IG  209 (296)
Q Consensus       134 ~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~-~~l~-~~~gw~~~f~i~~~~~~--~~  209 (296)
                      .|+..|......+.|+.|..|++-      ||..-....++.++|..++..++ ..+. +...|++.+....+..+  +.
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999776      78877777888999999885554 3333 34569888877766443  34


Q ss_pred             HHHHHhcCCceeec-CCCCChhhhhhhhhccCCC
Q 022513          210 LIALAIGKPFYRIQ-QPGESPLVRVAQVPHSLPI  242 (296)
Q Consensus       210 ~i~~~~~~~~~~~~-~~~~~~~~~~~~vl~~~~~  242 (296)
                      ...+++++|+|+.. +.+.++.++..+.+|...+
T Consensus       200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~  233 (485)
T KOG0569|consen  200 LLPFLPESPKYLLIKKGDEEEARKALKFYRGKED  233 (485)
T ss_pred             HHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCc
Confidence            55678899999886 6666666666666655543

>PRK09952 shikimate transporter; Provisional

Probab=99.61  E-value=3.5e-14  Score=133.43  Aligned_cols=177  Identities=18%  Similarity=0.171  Sum_probs=120.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhc--CCChhhHHHHH-----HHHHHHHHHHHhHHHHHhhhcCchhHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEM--HFDIAGASNTL-----TNFFGSTFLLCLVGGFISDTYLSRFATC   85 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~s~~~a~~~~-----~~~~~~~~~~~l~~G~laDr~~GRr~~i   85 (296)
                      ++|.........+++...........+.+..+++  +.++.. +...     ++..++..++.++.|+++|| +|||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHH
Confidence            4555555555666666665444334444555554  666653 3332     22334456778889999999 7999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhh
Q 022513           86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA  165 (296)
Q Consensus        86 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~  165 (296)
                      .++.+++.++.+++.++.+....           .......+++.|++.|++.|+..+....+++|.+|+++      |+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg  160 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTI-----------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KA  160 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHH-----------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------Cc
Confidence            99999999988877665321100           00012257889999999999999999999999999764      67


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhc--------cccchhHHHHHHHHHHHH
Q 022513          166 SYFNFYLFATTLAAMIGVTAIVYVF--------IDQGWWLGFLISSVATLI  208 (296)
Q Consensus       166 ~~~~~~~~~~~~G~~i~~~~~~~l~--------~~~gw~~~f~i~~~~~~~  208 (296)
                      ...+..+.+..+|..++..+..++.        ...|||..|.+.++..++
T Consensus       161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            7777777777888877765555443        247999999887665433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.60  E-value=3.8e-14  Score=134.98  Aligned_cols=175  Identities=14%  Similarity=0.080  Sum_probs=122.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhh-HHH-----HHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAG-ASN-----TLTNFFGSTFLLCLVGGFISDTYLSRFATCLV   87 (296)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-a~~-----~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~   87 (296)
                      ++......+..+++.+.+ ++..+...++.++++.+... ..+     +.++..++..+++++.|+++|| +|||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDF-GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence            455555556667777664 44556666788877643322 111     1355667788999999999999 799999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (296)
Q Consensus        88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~  167 (296)
                      +.+++.++.+++.++.++....           ......+++.|+++|+|.|+..+...++++|.+|+++      |+..
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g-----------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~  155 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG-----------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFM  155 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH-----------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHH
Confidence            9999999988877653211000           0001247899999999999999999999999999765      6777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhc--------cccchhHHHHHHHHHHH
Q 022513          168 FNFYLFATTLAAMIGVTAIVYVF--------IDQGWWLGFLISSVATL  207 (296)
Q Consensus       168 ~~~~~~~~~~G~~i~~~~~~~l~--------~~~gw~~~f~i~~~~~~  207 (296)
                      .++...+..+|..+++.+...+.        .++|||+.|++.++..+
T Consensus       156 ~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        156 GSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence            77777677777777665443321        25799999998665443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.60  E-value=4.3e-14  Score=130.14  Aligned_cols=154  Identities=9%  Similarity=0.094  Sum_probs=128.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      ..|.++.++...++...+...+.+.++.|++ ++|.|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~   81 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence            3466788888888888887777788888776 679999999999999999999999999999999 79999999999998


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+....+.                   +...+++.|++.|++.+...+...+...|..++++      |++.++.++
T Consensus        82 ~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  136 (381)
T PRK03633         82 AAGCAGLGLMV-------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYM  136 (381)
T ss_pred             HHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence            88877665542                   35678889999999999887777777777776432      678888888


Q ss_pred             HHHHHHHHHHHhhhhhhcccc
Q 022513          173 FATTLAAMIGVTAIVYVFIDQ  193 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~  193 (296)
                      ...++|..+++.+.+.+.+..
T Consensus       137 ~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633        137 MVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHhcccccc
Confidence            899999999999998886653

>PRK10133 L-fucose transporter; Provisional

Probab=99.59  E-value=1.2e-13  Score=129.81  Aligned_cols=154  Identities=16%  Similarity=0.057  Sum_probs=116.7

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~   90 (296)
                      +++...+..+....+...+........+| .+++++|.|+.+.++..+.+.++..++.++.|+++|| +|||+++..+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~   99 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF   99 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence            33455555555555666666544444444 4589999999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~  170 (296)
                      ++.++.+++.....                ..++..++++|++.|+|.|...+..++++.|..++++      +....+.
T Consensus       100 ~~~~~~~l~~~~~~----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~  157 (438)
T PRK10133        100 LYALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNL  157 (438)
T ss_pred             HHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHH
Confidence            99999877542221                1246788999999999999999999999998654332      3334556


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 022513          171 YLFATTLAAMIGVTAIVY  188 (296)
Q Consensus       171 ~~~~~~~G~~i~~~~~~~  188 (296)
                      ++....+|..+++.+++.
T Consensus       158 ~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        158 AQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666777788888776654

>TIGR00897 2A0118 polyol permease family

Probab=99.59  E-value=8.5e-14  Score=129.23  Aligned_cols=170  Identities=8%  Similarity=0.009  Sum_probs=133.1

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      |-+.||.+....+..++...+.+....+++.|+ +++|.+..+.++..+.+.++..++.+++|+++|| +||||++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~   85 (402)
T TIGR00897         8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGL   85 (402)
T ss_pred             HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHH
Confidence            446778888888888887777776777888887 5689999999999999999999999999999999 79999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (296)
Q Consensus        90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~  169 (296)
                      ++..++.+++..... .              ..+...+++.|++.|+|.+...+...+.+.|.+|+++      |++..+
T Consensus        86 ~~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g  144 (402)
T TIGR00897        86 LLWCVGHAAFIVFGL-G--------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVG  144 (402)
T ss_pred             HHHHHHHHHHHHHhc-c--------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHH
Confidence            888887655432111 0              1135567788999999988776777777888887543      788888


Q ss_pred             HHHHHHHHHH-HHHHhhhhhhccccchhHHHHHH
Q 022513          170 FYLFATTLAA-MIGVTAIVYVFIDQGWWLGFLIS  202 (296)
Q Consensus       170 ~~~~~~~~G~-~i~~~~~~~l~~~~gw~~~f~i~  202 (296)
                      +++.+.++|. .++|.+++++.+..||+..++..
T Consensus       145 ~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~  178 (402)
T TIGR00897       145 WFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA  178 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            8888888886 57888888888878866555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.59  E-value=5.3e-14  Score=132.95  Aligned_cols=144  Identities=10%  Similarity=0.025  Sum_probs=122.2

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchH
Q 022513           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA  124 (296)
Q Consensus        45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (296)
                      +++++..+.+.+.+.+.++..++.+++|+++|| +|||+++..+.++..++.++...+..                 .+.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~  131 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-----------------GGI  131 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH-----------------cCc
Confidence            688999999999999999999999999999999 79999999999888877766543321                 124


Q ss_pred             HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-cchhHHHHHHH
Q 022513          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID-QGWWLGFLISS  203 (296)
Q Consensus       125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~gw~~~f~i~~  203 (296)
                      ..+++.|++.|++.+...+....+++|.+|+++      |++..++++.+.++|..+++.+.+++.+. .+|++.|.+.+
T Consensus       132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~  205 (465)
T TIGR00894       132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG  205 (465)
T ss_pred             hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence            568889999999999999999999999998654      78888998899999999999999999888 49999999887


Q ss_pred             HHHHHHHHH
Q 022513          204 VATLIGLIA  212 (296)
Q Consensus       204 ~~~~~~~i~  212 (296)
                      +..++..++
T Consensus       206 ~~~~~~~~~  214 (465)
T TIGR00894       206 IVGCAWSLL  214 (465)
T ss_pred             HHHHHHHHH
Confidence            765544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.59  E-value=1e-13  Score=131.69  Aligned_cols=172  Identities=10%  Similarity=0.075  Sum_probs=122.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      +++.+.......++.....++....+ +++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence            44444444444444555555444333 46788999999999998888888899999999999999 79999999988888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.++...+.                   +...+++.|++.|++.+... ....+++|.+|++.      |+...+..+
T Consensus       112 ~~~~~~~~~~~-------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~  165 (476)
T PLN00028        112 APAVFCMSLVS-------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAA  165 (476)
T ss_pred             HHHHHHHHHhc-------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHH
Confidence            87776655542                   34567788999999887653 34567889998654      778877776


Q ss_pred             HHHHHHHHHHHhhhhhhc----c-----ccchhHHHHHHHHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVF----I-----DQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~----~-----~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ...++|+.+++.+.+.+.    +     ..|||+.|.+.+++.++..+.
T Consensus       166 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        166 GWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHH
Confidence            666777776655544331    1     258999999887766554433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.58  E-value=3.4e-14  Score=130.16  Aligned_cols=153  Identities=13%  Similarity=0.150  Sum_probs=127.7

Q ss_pred             hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513           34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (296)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~  113 (296)
                      ..+.++.+. +++|+++.+.++..+.+.++..++.+++|+++|| +|||+++..+.++..++.+++....          
T Consensus        10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~----------   77 (377)
T PRK11102         10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ----------   77 (377)
T ss_pred             HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence            445566655 5689999999999999999999999999999999 7999999999988888877766542          


Q ss_pred             CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ  193 (296)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  193 (296)
                               +...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+....+|..++|.+++++.+..
T Consensus        78 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  142 (377)
T PRK11102         78 ---------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWF  142 (377)
T ss_pred             ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                     34567888999999999888889999999988554      788888888899999999999999998888


Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 022513          194 GWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       194 gw~~~f~i~~~~~~~~~i~~  213 (296)
                      +|++.|.+.++..++..+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102        143 SWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            99999988776655544433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.58  E-value=9.6e-15  Score=134.37  Aligned_cols=138  Identities=33%  Similarity=0.619  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhh
Q 022513           82 FATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGA  161 (296)
Q Consensus        82 r~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~  161 (296)
                      +|++.++.+++++|.+++.++...+...          ++.+...+++++.++++|.|+.+|++.++++||+++++   +
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~----------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~   67 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLP----------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---D   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---T
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhh----------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---h
Confidence            4899999999999999988876433221          12345789999999999999999999999999999764   2


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeec-CCCCChhhh
Q 022513          162 KALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ-QPGESPLVR  232 (296)
Q Consensus       162 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~  232 (296)
                      .+|.++|+++|+++|+|+.+++.+.++++++.||.++|+++++.++++++.++.++++|... +|+++++.+
T Consensus        68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~  139 (372)
T PF00854_consen   68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTN  139 (372)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S-
T ss_pred             hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccch
Confidence            34789999999999999999999999999999999999999999999999999999999887 677777766

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.57  E-value=2.4e-14  Score=135.52  Aligned_cols=150  Identities=7%  Similarity=-0.098  Sum_probs=119.9

Q ss_pred             HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 022513           39 VLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC  118 (296)
Q Consensus        39 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~  118 (296)
                      .+.+.+++|++..+.+++.+.+..+..++.+++|+++|| +|||+++.++.++..++.+.+.....              
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~--------------  116 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLG--------------  116 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence            455778999999999999999999999999999999999 79999998888877776655544210              


Q ss_pred             CCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc---ch
Q 022513          119 LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ---GW  195 (296)
Q Consensus       119 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~---gw  195 (296)
                      ....+...+++.|++.|++.+...+....+++|.+|+++      |+...+++..+.++|..+++.+..++....   +|
T Consensus       117 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~  190 (467)
T PRK09556        117 SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV  190 (467)
T ss_pred             cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence            012356788999999999999988999999999999765      788888888888999999888776665432   58


Q ss_pred             hHHHHHHHHHHHHH
Q 022513          196 WLGFLISSVATLIG  209 (296)
Q Consensus       196 ~~~f~i~~~~~~~~  209 (296)
                      +..|.+.+++.++.
T Consensus       191 ~~~f~~~g~~~~~~  204 (467)
T PRK09556        191 IGMFIFPSIIALII  204 (467)
T ss_pred             hhHHHHHHHHHHHH
Confidence            88887766655443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.57  E-value=1.2e-13  Score=127.92  Aligned_cols=162  Identities=9%  Similarity=0.028  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      .+.+....++..++.......++. +.+++|.+..+.+++.+.+.+...++.+++|+++|| +|||+++.++.++..++.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGC   82 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHH
Confidence            444555666666654444444444 457889999899999999999999999999999999 799999999999888877


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +.+....                   +   .++.|++.|++.+...|...+++.|.+|+++      |++..++.....+
T Consensus        83 ~~~~~~~-------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~  134 (393)
T PRK11195         83 LLMLFGI-------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTI  134 (393)
T ss_pred             HHHHHHH-------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence            6654432                   1   2678899999999999999999999999643      7888888888889


Q ss_pred             HHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      +|..+||.+++++.+. .|+..+.+.+.+.+++
T Consensus       135 ~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        135 AAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999988764 3776666655444333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.57  E-value=3.3e-14  Score=139.18  Aligned_cols=193  Identities=13%  Similarity=0.168  Sum_probs=144.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      ++|.+++.+....+......+......+-++++++++..+.+++.+.+.++..++.++.|+++|| +||||.+.++.+++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~  108 (633)
T TIGR00805        30 KIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIM  108 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHH
Confidence            44544444444444444555666666677889999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHHHhhccC----------------CCCCCCCCC------------CcCCcc----hHHHHHHHHHHHHHcCcC
Q 022513           93 VLSLVMLTIQAYSKS----------------LHPPDCGKS------------SCLKGA----IAAYFYGSLYLYSLGCGG  140 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~----------------~~~~~~~~~------------~~~~~~----~~~~~~~~~~l~g~g~g~  140 (296)
                      .+|.+++++..++..                .+...|..+            .|....    .+..++++|++.|+|.+.
T Consensus       109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~  188 (633)
T TIGR00805       109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP  188 (633)
T ss_pred             HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence            999998877642110                001123110            122211    356788999999999999


Q ss_pred             cccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc----------------------chhHH
Q 022513          141 NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ----------------------GWWLG  198 (296)
Q Consensus       141 ~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~----------------------gw~~~  198 (296)
                      ..+...+++.|.+|+++      |+..+++++.+..+|..+|+++++++.+.+                      +|+.+
T Consensus       189 ~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~  262 (633)
T TIGR00805       189 IFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG  262 (633)
T ss_pred             chhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence            99999999999999765      788889999999999999999888765321                      27777


Q ss_pred             HHHHHHHHHHHHHH
Q 022513          199 FLISSVATLIGLIA  212 (296)
Q Consensus       199 f~i~~~~~~~~~i~  212 (296)
                      |.+.+++.++..+.
T Consensus       263 Fli~g~l~~l~~v~  276 (633)
T TIGR00805       263 FLICGGVALLTSIP  276 (633)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777666554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.57  E-value=1.3e-13  Score=130.17  Aligned_cols=147  Identities=11%  Similarity=0.079  Sum_probs=118.0

Q ss_pred             HHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcC
Q 022513           40 LYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL  119 (296)
Q Consensus        40 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  119 (296)
                      ..+.+++|.+.++.+++.+.+.++..++.+++|+++|| +|||++++.+.++..++.+++..+.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            34567899999999999999888889999999999999 7999999999888888877765543                


Q ss_pred             CcchHHHHH-HHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHH
Q 022513          120 KGAIAAYFY-GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLG  198 (296)
Q Consensus       120 ~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~  198 (296)
                         +...++ ..|++.|++.|...+...+++.|.++ ++      |++..++.+.+.++|..++|.+.+++.+..|||++
T Consensus       106 ---~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~  175 (455)
T TIGR00892       106 ---NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS  175 (455)
T ss_pred             ---hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence               223444 34688899988766666677788875 22      78888888889999999999999999888899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 022513          199 FLISSVATLIGLIAL  213 (296)
Q Consensus       199 f~i~~~~~~~~~i~~  213 (296)
                      |++.+++.++..+..
T Consensus       176 f~~~~~~~~~~~v~~  190 (455)
T TIGR00892       176 FLILGGLLLHCCVCG  190 (455)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998887666554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.56  E-value=6.4e-14  Score=132.09  Aligned_cols=150  Identities=9%  Similarity=0.054  Sum_probs=115.8

Q ss_pred             hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 022513           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (296)
Q Consensus        37 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~  116 (296)
                      ...+|+.++ |+++.+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.+.+.+....           
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~-----------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA-----------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence            344577777 9999999999999999999999999999999 799999999998888887766554210           


Q ss_pred             CcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH-HHHhhhhhhccccch
Q 022513          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM-IGVTAIVYVFIDQGW  195 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~l~~~~gw  195 (296)
                          ..+...+++.|++.|++.|...+.......|++|+++      |++..++++.+.++|+. .+|+....+....+|
T Consensus       117 ----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw  186 (452)
T PRK11273        117 ----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW  186 (452)
T ss_pred             ----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence                1235667888999999998888877888889988554      78888888888888864 455443333333489


Q ss_pred             hHHHHHHHHHHHHH
Q 022513          196 WLGFLISSVATLIG  209 (296)
Q Consensus       196 ~~~f~i~~~~~~~~  209 (296)
                      ++.|++.+++.++.
T Consensus       187 ~~~f~i~~~~~~~~  200 (452)
T PRK11273        187 HAALYMPAFAAILV  200 (452)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998877655443

>TIGR00898 2A0119 cation transport protein

Probab=99.56  E-value=2.6e-14  Score=136.33  Aligned_cols=157  Identities=18%  Similarity=0.137  Sum_probs=124.9

Q ss_pred             HhhhhcCCC---hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 022513           41 YFKNEMHFD---IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS  117 (296)
Q Consensus        41 yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  117 (296)
                      -+.+++|++   ..+.++..+++.++..++.++.|+++|| +|||+++.++.++..++.++..++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            356789998   8889999999999999999999999999 7999999999988888877665542              


Q ss_pred             cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhH
Q 022513          118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWL  197 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~  197 (296)
                           +...+++.|++.|++.++..+....+++|.+|+++      |+...+.+..+..+|..+++.++..+.+   ||+
T Consensus       179 -----~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~  244 (505)
T TIGR00898       179 -----NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRW  244 (505)
T ss_pred             -----cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence                 45788999999999999999999999999998654      6677777777888888888877665543   999


Q ss_pred             HHHHHHHHHHHHHH--HHHhcCCceeecCCC
Q 022513          198 GFLISSVATLIGLI--ALAIGKPFYRIQQPG  226 (296)
Q Consensus       198 ~f~i~~~~~~~~~i--~~~~~~~~~~~~~~~  226 (296)
                      .+++.++..++..+  .+.+++|++...+.+
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~  275 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGR  275 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCC
Confidence            88877665444332  334566776654444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.56  E-value=4.8e-14  Score=132.36  Aligned_cols=152  Identities=10%  Similarity=0.066  Sum_probs=120.3

Q ss_pred             HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 022513           38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS  117 (296)
Q Consensus        38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  117 (296)
                      ..+++++ +|+++++.+++.+.+.++..++.++.|+++|| +|||+.+.++.++..++.++.......            
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~------------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA------------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc------------
Confidence            3456665 59999999999999999999999999999999 799999999888888877665433110            


Q ss_pred             cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh-ccccchh
Q 022513          118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV-FIDQGWW  196 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l-~~~~gw~  196 (296)
                         ..+...+.+.|++.|++.|...+.....+.|.+|+++      |++.+++++...++|+.+++.+.+.. ....+||
T Consensus       115 ---~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~  185 (438)
T TIGR00712       115 ---TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH  185 (438)
T ss_pred             ---cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence               1234567788999999999888888899999998765      78899998889999999888776654 3456899


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022513          197 LGFLISSVATLIGLIA  212 (296)
Q Consensus       197 ~~f~i~~~~~~~~~i~  212 (296)
                      ..|++.+++.++..+.
T Consensus       186 ~~f~~~~~~~~i~~~~  201 (438)
T TIGR00712       186 AALYFPAICAIIVALF  201 (438)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999877766554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=6.2e-14  Score=126.94  Aligned_cols=169  Identities=9%  Similarity=0.062  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhH---HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISM---VLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l---~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      -+.++...++...++|-+.-+.   .+++.++.++|.++.+.+.+.+.+...++-.+.|.++|| .+.|..+.+++++..
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsa  105 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHH
Confidence            3556677888888888887554   478888999999999999999999999999999999999 699999999999988


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      +..+++.++.                   +...+.+..++.|..+|.-.|++...++..|+.++      ||+..+.++.
T Consensus       106 i~nil~Gfs~-------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~  160 (448)
T COG2271         106 IVNILFGFSP-------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNT  160 (448)
T ss_pred             HHHHHHhhhh-------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehh
Confidence            8888877654                   45678888899999999999999999999999766      8999999999


Q ss_pred             HHHHHHHHHHhhh--hhhccccchhHHHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAI--VYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       174 ~~~~G~~i~~~~~--~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      +-|+|+.+.|.+.  +++..+.+||.+|++++++.++..+
T Consensus       161 shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival  200 (448)
T COG2271         161 SHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVAL  200 (448)
T ss_pred             hhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            9999999999998  8888888999999999887655433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.54  E-value=5.1e-13  Score=125.29  Aligned_cols=175  Identities=15%  Similarity=0.054  Sum_probs=120.1

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHH-HHHHHH-----HHHHHHhHHHHHhhhcCchhHH
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNT-LTNFFG-----STFLLCLVGGFISDTYLSRFAT   84 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~-~~~~~~-----~~~~~~l~~G~laDr~~GRr~~   84 (296)
                      +.+++......+..+++.+....+ ....+.+.++++.+..+.+.. .+....     ...+++++.|+++|| +|||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~   88 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKG   88 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHH
Confidence            334555555566666666665444 444556788899877665433 322221     123678899999999 799999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhh
Q 022513           85 CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL  164 (296)
Q Consensus        85 i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r  164 (296)
                      ++.+.+++.++.+++.++.+.....           ......++++|++.|++.|...+....+++|.+|+++      |
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r  151 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIG-----------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K  151 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHH-----------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c
Confidence            9999999998888776653211000           0001246889999999999998988999999999765      7


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhh--------ccccchhHHHHHHHH
Q 022513          165 ASYFNFYLFATTLAAMIGVTAIVYV--------FIDQGWWLGFLISSV  204 (296)
Q Consensus       165 ~~~~~~~~~~~~~G~~i~~~~~~~l--------~~~~gw~~~f~i~~~  204 (296)
                      ++..+++....++|..+++.+++.+        .+..|||+.|++...
T Consensus       152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            7887777766667766666555443        246799999987543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.54  E-value=6.3e-13  Score=123.04  Aligned_cols=175  Identities=17%  Similarity=0.094  Sum_probs=123.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      +++..+..+...+.....++....+++.|+++++|++..+++.+.+...++..++.+++|+++|| +|||+.+..+.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHH
Confidence            44444444444444444445556788999999999999988888777777778889999999999 79999887766554


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .+.........                   +...+.+.+++.+++.|...+..+.+..|.+|++       +++..+.++
T Consensus       293 ~~~~~~~~~~~-------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~~~~~~  346 (393)
T PRK15011        293 VCFYAGMLMAH-------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSATTLYT  346 (393)
T ss_pred             HHHHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchHHHHHH
Confidence            44433222111                   2334555666666666655556667778888742       567778877


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~  214 (296)
                      ...++|..+++.+++++.+..+|+..|.+.+++.+++++..+
T Consensus       347 ~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        347 NTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999988999999887776666555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.54  E-value=4.1e-13  Score=127.12  Aligned_cols=174  Identities=14%  Similarity=0.082  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      .++...+..++....+++...++|.|+++++|+|..+++.......++..++.+++|+++|| +|||+.+.....+..++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHH
Confidence            45556666667777777888899999999999999999998888889999999999999999 79998776654444333


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      ..+.....                 ..+....++.+++.|++..+..........|.+|++.      +++..+..+...
T Consensus       338 ~~~~~~~~-----------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g  394 (467)
T PRK09556        338 FTLGVYQH-----------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFA  394 (467)
T ss_pred             HHHHHHHh-----------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHH
Confidence            22222211                 0122344456666665433333333456669998654      788888888888


Q ss_pred             HH-HHHHHHhhhhhhcc------------ccchhHHHHHHHHHHHHHHHHH
Q 022513          176 TL-AAMIGVTAIVYVFI------------DQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       176 ~~-G~~i~~~~~~~l~~------------~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      ++ |+.++|.+.|++.+            ..+|+..|.+..++.+++.+..
T Consensus       395 ~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        395 YLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            86 77899999999988            5689999988776666654443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.53  E-value=6.8e-13  Score=122.77  Aligned_cols=175  Identities=11%  Similarity=-0.035  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      ..|......++...++....++++.|+++++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.+...++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            45666667778788877888999999999999999999999999999999999999999999 79999998877666554


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      ..........+...           ......+.+++++.+++.+...+....+..|.-++        ++..++......
T Consensus        82 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~  142 (396)
T TIGR00882        82 FAPFFIYVFGPLLQ-----------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKARMFG  142 (396)
T ss_pred             HHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhhhhc
Confidence            43322111000000           01123455667788888888777777766553221        233445555677


Q ss_pred             HHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      ++|..++|.+++.+.+ .+|+..|++.+++.++..+
T Consensus       143 ~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~  177 (396)
T TIGR00882       143 CVGWALCASIAGILFS-IDPQIVFWLGSGFALILML  177 (396)
T ss_pred             ccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHH
Confidence            8999999999887755 5899999887766555443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.52  E-value=9.7e-13  Score=125.09  Aligned_cols=148  Identities=19%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (296)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~  112 (296)
                      +...++|.|+++++|++..+++.+.+...++..++.+++|+++|| +|||+++..+.++..++.++.....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            456788999988999999999999999999999999999999999 7999998877666555443322211         


Q ss_pred             CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 022513          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (296)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~  192 (296)
                              ........+..++.+....+..+..+.++.|.+|++.      |++.+++++...++|+.++|.+.+++.++
T Consensus       363 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        363 --------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             --------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence                    1122233333333333333345677788889988654      78888888888899999999999999999


Q ss_pred             cchhHHHHHHHH
Q 022513          193 QGWWLGFLISSV  204 (296)
Q Consensus       193 ~gw~~~f~i~~~  204 (296)
                      .||+..+...+.
T Consensus       429 ~g~~~~~~~~~~  440 (496)
T PRK03893        429 LDLGTALASLSF  440 (496)
T ss_pred             CChHHHHHHHHH
Confidence            898877755443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.52  E-value=2.7e-13  Score=122.81  Aligned_cols=178  Identities=16%  Similarity=0.140  Sum_probs=136.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-chhHHHHHH-HHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFATCLVF-GTLE   92 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GRr~~i~~~-~~~~   92 (296)
                      |.+|.+.+..++....-|++..+.|.|+.+..|+|..++.+..+.+..++..|++++||++||.+ |||..+-+. .+..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            66888888999999999999999999999999999999999999999999999999999999988 887755443 3333


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+....+.                 +.+..+..+..+.+|+..-+.+-.+.....|..|.+.      .|+..+...
T Consensus       332 ~~~~~~~w~~~-----------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~G  388 (448)
T COG2271         332 TASLVLYWLAP-----------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVG  388 (448)
T ss_pred             HHHHHHHHcCC-----------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhh
Confidence            33333333221                 2345666677777888776666666666778888654      567767766


Q ss_pred             HHHHH-HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          173 FATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       173 ~~~~~-G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      ++..+ |...+....+++.|.+||...|.+..+..+++.+++.+
T Consensus       389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            67777 88888888899988899999988776666555554444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.51  E-value=1.7e-12  Score=120.15  Aligned_cols=174  Identities=15%  Similarity=0.148  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhcCchhHHHH-HHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLSRFATCL-VFGTLE   92 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~GRr~~i~-~~~~~~   92 (296)
                      +..+..+...++.+++.....+.++.|+++++|.|.++.+++.+.... +..++++.+++ +|| +||||.++ .+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~   92 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLG   92 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHH
Confidence            345556667888888888888999999999999999999998776544 55566666777 999 69998755 444444


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHH-HHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY-GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      .++..+...+.                   +...++ +++++.+++ +...+...++..|..+++.   | ..+...+..
T Consensus        93 ~~~~~~~~~~~-------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~  148 (393)
T PRK15011         93 VLACTLFAWNR-------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG---R-EAVMFSSFL  148 (393)
T ss_pred             HHHHHHHHHhh-------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc---c-hHHHHHHHH
Confidence            45544444332                   233443 344444444 3455666676777554322   1 123334566


Q ss_pred             HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~  214 (296)
                      +.+.++|..++|.+++++.++.|||..|++.++..++..+..+
T Consensus       149 ~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        149 RAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999998889999999888766555444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.51  E-value=1.5e-12  Score=122.10  Aligned_cols=149  Identities=12%  Similarity=-0.040  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      |.++. ....+...+....+...+...+.+ ++|+|.++.+++.++..++..++.++.|++.|| +|.|+++.++.++..
T Consensus        34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence            44433 333444445444444555555544 899999999999999999999999999999999 799999999999988


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      +.++...++..  .            ...++..+++.|++.|++ |...+.....++++||+++      |++..+++..
T Consensus       112 i~~~~~~~a~~--~------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g  170 (462)
T PRK15034        112 IPCVWLGIAVQ--N------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGG  170 (462)
T ss_pred             HHHHHHHHHHc--c------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHH
Confidence            88777665411  0            012567899999999998 6677888899999999654      7788887755


Q ss_pred             HHHHHHHHHHhhh
Q 022513          174 ATTLAAMIGVTAI  186 (296)
Q Consensus       174 ~~~~G~~i~~~~~  186 (296)
                      ..++|..+++.+.
T Consensus       171 ~G~~G~~l~~~l~  183 (462)
T PRK15034        171 LGNLGVSVMQLVA  183 (462)
T ss_pred             HHhhHHHHHHHHH
Confidence            5566665544433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.51  E-value=7.7e-16  Score=144.64  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHH
Q 022513           52 GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSL  131 (296)
Q Consensus        52 ~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (296)
                      ..++..+...++..+|.+++|+++|| +|||+++.++.++..+|.++...+..                ..+...+.++|
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~R  109 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS----------------YNNFWMLLIGR  109 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc----------------ccccccccccc
Confidence            45678888999999999999999999 79999999999999999887766531                01356789999


Q ss_pred             HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc---cccchhHHHHHHHHHHH-
Q 022513          132 YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF---IDQGWWLGFLISSVATL-  207 (296)
Q Consensus       132 ~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~---~~~gw~~~f~i~~~~~~-  207 (296)
                      ++.|++.|+..+..+.++.|..|++.      |+....+.+....+|..++..+...+.   +..+||..+.+..+..+ 
T Consensus       110 ~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~  183 (451)
T PF00083_consen  110 FLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL  183 (451)
T ss_pred             cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999998765      777777777788888887765543332   23459988877665442 


Q ss_pred             -HHHHHHHhcCCceeecCCCCChhhhhhhh
Q 022513          208 -IGLIALAIGKPFYRIQQPGESPLVRVAQV  236 (296)
Q Consensus       208 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~v  236 (296)
                       +....+++++|+|...+.+.++.++..+.
T Consensus       184 ~~~~~~~~pESP~wL~~~~~~~~A~~~l~~  213 (451)
T PF00083_consen  184 VLLLRFFLPESPRWLLSKGRDEEAEKVLRK  213 (451)
T ss_pred             ccccccccccccceeccccccccccccccc
Confidence             23445678999999887765444443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=3.4e-13  Score=125.64  Aligned_cols=171  Identities=16%  Similarity=0.131  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (296)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~   99 (296)
                      ++...++..++.......++.+. ++++.+..+.+++.+...++..++.++.|+++|| +|||+++..+.++..++.+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHH
Confidence            33445555555444444555554 5677899999999999999999999999999999 799999988877777666554


Q ss_pred             HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (296)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~  179 (296)
                      .......              ..+...+++.+++.|++.+...++..+++.|.+|+++      |++..+..+...++|.
T Consensus       100 ~~~~~~~--------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~  159 (417)
T PRK10489        100 ALNAFLP--------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGS  159 (417)
T ss_pred             HHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHH
Confidence            4321111              1235677788999999888777888888888887543      6777788888899999


Q ss_pred             HHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      .+||.+++++.+..+|++.|.+.++..++..+.
T Consensus       160 ~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T PRK10489        160 VISPALGGLLIAAGGVAWNYGLAAAGTFITLLP  192 (417)
T ss_pred             HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999999999888888999988776665554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.51  E-value=7.9e-13  Score=120.07  Aligned_cols=169  Identities=14%  Similarity=0.093  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      .+......++..........+.+.|. +++|.+..+.+.......++..++.++.|+++|| +|||+.+.++.++..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHH
Confidence            33333344444444444555566665 5688888888888888999999999999999999 799999998888887776


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +++.....                 .....++...++.+++.|...+..+.+.+|.+|+++      |++.+++++...+
T Consensus       285 ~~~~~~~~-----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~  341 (377)
T TIGR00890       285 AAMLFIPM-----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKA  341 (377)
T ss_pred             HHHHHccc-----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHH
Confidence            65543321                 112234455667788888877888889999998655      7888899888999


Q ss_pred             HHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~  210 (296)
                      +|..++|.+.+++.++.||+..|.+.+++.+++.
T Consensus       342 ~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       342 VAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999999999999988999999988777665543

>PRK09952 shikimate transporter; Provisional

Probab=99.50  E-value=1.8e-12  Score=121.76  Aligned_cols=180  Identities=11%  Similarity=-0.034  Sum_probs=124.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      +++.........++..+.+|....+++.|+++++|++......+.....+...++.++.|+++|| +|||+++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence            34444444445666777888888999999999999988765555555666677888999999999 79999988877665


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+.+..... .              ......+++..++.+++.+...+..+++.+|.+|.+.      |++..++.+
T Consensus       327 ~~~~~~~~~~~~-~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~  385 (438)
T PRK09952        327 TLSAFPFFMALE-A--------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGY  385 (438)
T ss_pred             HHHHHHHHHHHH-c--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHH
Confidence            554433322210 0              1122333445556677777777888899999999754      667777644


Q ss_pred             -HHHHHHHHHHHhhhhhhcccc--chhHHHHHHHHHHHHHHHHHH
Q 022513          173 -FATTLAAMIGVTAIVYVFIDQ--GWWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       173 -~~~~~G~~i~~~~~~~l~~~~--gw~~~f~i~~~~~~~~~i~~~  214 (296)
                       .+..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+
T Consensus       386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence             445689999999999987643  477777766666665554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.50  E-value=1.1e-12  Score=122.25  Aligned_cols=180  Identities=10%  Similarity=-0.068  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +..+.+....++...++....++++.|+++++|+|..+.+.+.+.+.++..+++++.|+++|| +|||+++.++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            456666667777777777788999999999999999999999999999999999999999999 7999999887665554


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +..........+..              . .....+..+.++..+...........+..++.    .+.++..++..+..
T Consensus        89 ~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~  149 (420)
T PRK09528         89 LFGPFFIYVFAPLL--------------Q-YNILLGAIVGGIYLGFGFLAGAGAIEAYIERV----SRRSGFEYGRARMW  149 (420)
T ss_pred             HHHHHHHHHHHHHH--------------H-HHHHHHHHHHHHHhhhhhccchhhhhhHHHHH----HhhccccchhhHHh
Confidence            43322211100000              0 00112222223222222222222222222111    11245555666667


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      .++|..++|.+++++.+ .+|+..|++.++..++..+..+.
T Consensus       150 ~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  189 (420)
T PRK09528        150 GSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF  189 (420)
T ss_pred             hhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence            88999999999888865 47999998877666555444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.49  E-value=1.4e-12  Score=121.21  Aligned_cols=148  Identities=11%  Similarity=0.033  Sum_probs=124.1

Q ss_pred             HhHHHHhhhhcCCChhh-HHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAG-ASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~-a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~  114 (296)
                      ++...|+.+++|++.++ .+.+.+++..+..++.+++|+++|| +|.|+++.++.+...+..+++.++.           
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~-----------  113 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT-----------  113 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            45567899999999999 9999999999999999999999999 7999999999999988888777653           


Q ss_pred             CCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 022513          115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG  194 (296)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g  194 (296)
                              +...+.+.|++.|++.|+.. +...++...+|+++      |++..+....+..+|.++++.+++++ ..+|
T Consensus       114 --------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~g  177 (511)
T TIGR00806       114 --------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG  177 (511)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence                    35679999999999999998 99999999999554      78888899999999999999999884 4678


Q ss_pred             hhHHHH---HHHHHHHHHHH
Q 022513          195 WWLGFL---ISSVATLIGLI  211 (296)
Q Consensus       195 w~~~f~---i~~~~~~~~~i  211 (296)
                      |+.-+.   +......++++
T Consensus       178 Wr~y~~Ln~Isl~s~~~a~~  197 (511)
T TIGR00806       178 WISYSTLNIISLVFMTFSVF  197 (511)
T ss_pred             chhHHHHHHHHHHHHHHHHH
Confidence            885443   33344444433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00896 CynX cyanate transporter

Probab=99.49  E-value=4.4e-13  Score=122.10  Aligned_cols=146  Identities=12%  Similarity=0.087  Sum_probs=116.2

Q ss_pred             HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  115 (296)
                      ..+.+.+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+.. ...            
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~------------   85 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP------------   85 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence            344455778999999999999999999999999999999999 799999999888877776554 221            


Q ss_pred             CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--
Q 022513          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ--  193 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~--  193 (296)
                             +...+++.|++.|+|.+...+..+....|.+++ +      |++..+.++...++|..+++.+.+.+.+..  
T Consensus        86 -------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~  151 (355)
T TIGR00896        86 -------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGG  151 (355)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                   345678899999999988778888888887763 2      678888888888999999998888776654  


Q ss_pred             chhHHHHHHHHHHHHH
Q 022513          194 GWWLGFLISSVATLIG  209 (296)
Q Consensus       194 gw~~~f~i~~~~~~~~  209 (296)
                      +||..|.+.++..++.
T Consensus       152 ~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       152 HWQQALAWWALPALLA  167 (355)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            3888887665544333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.48  E-value=2.7e-12  Score=115.25  Aligned_cols=172  Identities=21%  Similarity=0.213  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-HHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVFGTLEVL   94 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-~i~~~~~~~~i   94 (296)
                      ..+......++..........+.+.|+++.+|.+..+.+.......++..++.++.|+++|| +|||+ .+..+..+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence            34455556666677777778888999988889999999999999999999999999999999 79999 89888888888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +.+......                   +....++..++.+++.+...+....+..|..|+++      |++.++.++..
T Consensus       255 ~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  309 (352)
T cd06174         255 GLLLLALAP-------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTF  309 (352)
T ss_pred             HHHHHHHhc-------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHH
Confidence            776665432                   24567778889999999999999999999998644      78899999999


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      .++|..+++.+.+++.+..+|+..+.+.+++.+++.+..
T Consensus       310 ~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         310 GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            999999999999999988899999998888776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.48  E-value=3.8e-13  Score=129.03  Aligned_cols=163  Identities=14%  Similarity=0.055  Sum_probs=130.0

Q ss_pred             hhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcch
Q 022513           44 NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI  123 (296)
Q Consensus        44 ~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (296)
                      +..+.+.....+..+++.++..+|+++.|+++|| +|||++++.+.++.+++.++.+++.                   +
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------~  170 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------N  170 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------c
Confidence            4566677788888999999999999999999999 8999999999999999887766653                   5


Q ss_pred             HHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHH
Q 022513          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISS  203 (296)
Q Consensus       124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~  203 (296)
                      +..+++.|++.|++.++...+...+++|.++++.      |+...++ ......++.+++.+++++..  +||+.+++..
T Consensus       171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~  241 (521)
T KOG0255|consen  171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS  241 (521)
T ss_pred             HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence            6789999999999999999999999999999776      6677666 55666777777778888776  7999988876


Q ss_pred             HHHHHHHH-HHHh-cCCceeecCCCCChhhhhhh
Q 022513          204 VATLIGLI-ALAI-GKPFYRIQQPGESPLVRVAQ  235 (296)
Q Consensus       204 ~~~~~~~i-~~~~-~~~~~~~~~~~~~~~~~~~~  235 (296)
                      +..++.++ .++. ++|||+..+.+.+...+..+
T Consensus       242 ~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~  275 (521)
T KOG0255|consen  242 IPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILK  275 (521)
T ss_pred             HHHHHHHHHHHccCcChHHHHHcCchHHHHHHHH
Confidence            65544433 3444 89999988776533333333

>PRK03699 putative transporter; Provisional

Probab=99.47  E-value=2.3e-12  Score=119.20  Aligned_cols=169  Identities=13%  Similarity=0.117  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +.++......++...+.+++..++|.|+++++|+|..+++...+.+.++..++.+++|+++|| +|||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence            344555555566666777888999999999999999999999999889999999999999999 7999988876666555


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +..++....                   +...+.+..++.|++.++..+...++..|..|.+.       +...+..+..
T Consensus       284 ~~~~~~~~~-------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~  337 (394)
T PRK03699        284 LMYLFVNTD-------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVAS-------PKLVNFILTC  337 (394)
T ss_pred             HHHHHHHcC-------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-------HHHHHHHHHh
Confidence            443332211                   12334455667777777677777777777766432       3345566667


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~  210 (296)
                      .++|..++|.+.+++.+..|++..+++.+++.+++.
T Consensus       338 ~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (394)
T PRK03699        338 GTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF  373 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence            889999999999999988899988887666555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.45  E-value=2.4e-12  Score=127.36  Aligned_cols=129  Identities=16%  Similarity=0.052  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHH
Q 022513           57 LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL  136 (296)
Q Consensus        57 ~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  136 (296)
                      ..+..++..++.+++|+++|| +|||+++.++.++..++.+++....                   +...+++.+++.++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-------------------s~~~ll~~~~l~g~  660 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-------------------SESAMIALLCLFGG  660 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHH
Confidence            344557778899999999999 7999999988888877766655432                   12345556667777


Q ss_pred             cCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          137 GCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       137 g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +.++..+...++++|.+|++.      |++.+++.+....+|++++|.+++++.+. +...+|.+.+++.+++.++
T Consensus       661 ~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       661 LSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            777778888999999999654      89999999999999999999998877653 3456777766665554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.45  E-value=3.4e-12  Score=133.04  Aligned_cols=154  Identities=12%  Similarity=0.084  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChh--hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA--GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~--~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      .....+...++.+++..+....+..++...++.+..  ..+++.+++.++..++.+++|+++|| +|||++++++.++.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHH
Confidence            344444555555555545555555566666666543  35777888899999999999999999 799999999887776


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.++..++..                ..+...+++.|++.|++.+...+...++++|.+|+++      |+..++++..
T Consensus        89 ~~~~~~~~~~~----------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~  146 (1146)
T PRK08633         89 GLTLLIVLAYY----------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEA  146 (1146)
T ss_pred             HHHHHHHHHHH----------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHH
Confidence            66655544321                1235788999999999999999999999999999765      7888999999


Q ss_pred             HHHHHHHHHHhhhhhhccc
Q 022513          174 ATTLAAMIGVTAIVYVFID  192 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~  192 (296)
                      +.++|..+|+.+++++...
T Consensus       147 ~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        147 FTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999888654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.45  E-value=4.9e-12  Score=115.46  Aligned_cols=163  Identities=13%  Similarity=0.012  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHh
Q 022513           24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA  103 (296)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~  103 (296)
                      .++..........+++.|+++++|.+..+.+.......+...++.+++|+++|| +|||+++.++.++..+.........
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH
Confidence            333333334455677889989999999988888777777777788999999999 7999998877665544433322221


Q ss_pred             hccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022513          104 YSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV  183 (296)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~  183 (296)
                                         +...+++.+++.+++.|...+....+..|..|++       +++..+.++...++|..++|
T Consensus       287 -------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~  340 (375)
T TIGR00899       287 -------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAG  340 (375)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHH
Confidence                               2344556677778887777777778888887642       45777888888899999999


Q ss_pred             hhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513          184 TAIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       184 ~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      .+.+++.+..||+..|.+.+++.+++.+..
T Consensus       341 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       341 SVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            999999888899999988887766665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.45  E-value=5.6e-12  Score=114.29  Aligned_cols=185  Identities=13%  Similarity=-0.007  Sum_probs=145.4

Q ss_pred             CcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513            8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV   87 (296)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~   87 (296)
                      ..|+.++|.++. ....+...+....+...+..++.+++|+|+.|.++++.+-.+...+..++-|.+.|| +|.|++..+
T Consensus         7 ~~k~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~   84 (417)
T COG2223           7 RGKRIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTIL   84 (417)
T ss_pred             ccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHH
Confidence            345667777664 444555566666777788888999999999999999999999999999999999999 799999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (296)
Q Consensus        88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~  167 (296)
                      +.++.++-.+....+...+                +.+.+++...+.|++.|.+ +...+++++.||+++      .|..
T Consensus        85 s~~l~~IP~~~~~~a~~~~----------------~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~A  141 (417)
T COG2223          85 SMLLLLIPCLGLAFAVTYP----------------STWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLA  141 (417)
T ss_pred             HHHHHHHHHHHHHHHccCC----------------chHHHHHHHHHHhccccee-hcccccccccCChhh------hhHH
Confidence            9988888777777765322                3367888888888886654 555677899999765      6788


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccc---hhHHHHHHHHHHHHHHHHHHhcCC
Q 022513          168 FNFYLFATTLAAMIGVTAIVYVFIDQG---WWLGFLISSVATLIGLIALAIGKP  218 (296)
Q Consensus       168 ~~~~~~~~~~G~~i~~~~~~~l~~~~g---w~~~f~i~~~~~~~~~i~~~~~~~  218 (296)
                      .+++. ..|+|..+...+...+....+   |+.+..+..+.+++..+.++...+
T Consensus       142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88877 889999998888888887777   888887777777776666555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.44  E-value=5.3e-12  Score=116.74  Aligned_cols=161  Identities=20%  Similarity=0.155  Sum_probs=120.3

Q ss_pred             HHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513           26 LENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS  105 (296)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~  105 (296)
                      +..+++.....+++.|+.+ .|.+  +.+.....+.++..++.++.|++.|| +|||+.+..+..+..++.+++....  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--  300 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP--  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3445555666778888764 4553  34555667777888899999999999 7999998888777777765544321  


Q ss_pred             cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513          106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA  185 (296)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~  185 (296)
                                       +...+++.+++.|++.+...+.......|.+|+++      |++..++++...++|..+++.+
T Consensus       301 -----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        301 -----------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             -----------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                             23456677888999888777777777778777543      7888899888999999999989


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          186 IVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       186 ~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      .+++.+..||+..|.+.+++.+++++....
T Consensus       358 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        358 AGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999988889999998887776666555443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=3.1e-12  Score=119.57  Aligned_cols=176  Identities=12%  Similarity=-0.000  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHhhhhcCCC--------hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           20 VFVLSALENMGFIANGISMVLYFKNEMHFD--------IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      .+...++..........+++.|+++ .|.+        ....+...++..+...++.++.|+++|| +|||+++.++.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~  290 (418)
T TIGR00889       213 FFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVA  290 (418)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            3444444444444455667777754 4433        3456777888888888999999999999 7999999999988


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..++..++.....               .......+++..++.|++.+...+....+++|.+|++.      |++.++++
T Consensus       291 ~~v~~~l~~~~~~---------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~  349 (418)
T TIGR00889       291 WALRFGFFAYGDP---------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLF  349 (418)
T ss_pred             HHHHHHHHHHcCc---------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence            8777655544210               01123456677888999888888888899999998554      78899988


Q ss_pred             H-HHHHHHHHHHHhhhhhhccc------cchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513          172 L-FATTLAAMIGVTAIVYVFID------QGWWLGFLISSVATLIGLIALAIGKP  218 (296)
Q Consensus       172 ~-~~~~~G~~i~~~~~~~l~~~------~gw~~~f~i~~~~~~~~~i~~~~~~~  218 (296)
                      + ....+|..+||.+.+++.++      .||+..|.+.+++.++..+++....+
T Consensus       350 ~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       350 TLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7 56789999999999998876      46999998877766555554444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.44  E-value=2.5e-12  Score=117.45  Aligned_cols=169  Identities=14%  Similarity=0.090  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      ..+......++....++....+++.|+++++|.+..+.+.......++..++.+++|+++|| +|||+.+..+..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHH
Confidence            35555666677777778888899999999999999999888888888999999999999999 79999877655544333


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH-HHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY-LFA  174 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~-~~~  174 (296)
                      .+....... .              ..+...++....+.+++.+...+...+++.|.+|++.      |++..+.. ..+
T Consensus       299 ~~~~~~~~~-~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~  357 (394)
T TIGR00883       299 AVPLLMALL-D--------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLA  357 (394)
T ss_pred             HHHHHHHHh-c--------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhH
Confidence            211111110 0              1123445566677888888888889999999999765      56666653 455


Q ss_pred             HHHHHHHHHhhhhhhccccc-hhHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQG-WWLGFLISSVAT  206 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~  206 (296)
                      ..+|..++|.+.+++.++.| |+..++...++.
T Consensus       358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       358 GAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            67888899999999988877 776665554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.44  E-value=1e-11  Score=115.00  Aligned_cols=177  Identities=10%  Similarity=-0.030  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      ..+.+....++...+++++..+++.|+++ +|.+..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..++
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~  283 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVG  283 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHH
Confidence            34445555556677888888999999976 79999999999999999999999999999999 79999988887777666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      ...+....                 . +....  ...+.|++.+...+.......|.+++++     .+++.+++.+...
T Consensus       284 ~~~~~~~~-----------------~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~  338 (393)
T PRK09705        284 FCGFIWLP-----------------L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQGIG  338 (393)
T ss_pred             HHHHHHcc-----------------c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHH
Confidence            55443211                 0 11112  1235677777777776666677775321     2688888888889


Q ss_pred             HHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          176 TLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                      ++++.++|.+.+++.+..| |...|.+.+++.++..+......|+
T Consensus       339 ~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        339 FIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999998875 7788887776666555554444444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.43  E-value=5.2e-12  Score=116.20  Aligned_cols=156  Identities=15%  Similarity=0.066  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 022513           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT  100 (296)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~  100 (296)
                      .....+......+...+++.|+.+++|++..+.+.+.....++..++.++.|+++|| +|||+.+.++.++..+..+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~  322 (405)
T TIGR00891       244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVF  322 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHH
Confidence            333344455555677788999999999999999999999999999999999999999 7999998887765433222211


Q ss_pred             HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 022513          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM  180 (296)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~  180 (296)
                      ...                  .+...+.++.++.++..++..+..++++.|.+|++.      |++.++..+...++|+.
T Consensus       323 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~  378 (405)
T TIGR00891       323 AIG------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGA  378 (405)
T ss_pred             HhC------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHH
Confidence            110                  122345555566666666677788889999998765      78888998888999999


Q ss_pred             HHHhhhhhhccccc-hhHHHHH
Q 022513          181 IGVTAIVYVFIDQG-WWLGFLI  201 (296)
Q Consensus       181 i~~~~~~~l~~~~g-w~~~f~i  201 (296)
                      ++|.+.+++.++.| |+..+..
T Consensus       379 ~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       379 LAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHhccccchhHHh
Confidence            99999999999887 7665543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=7.6e-13  Score=118.85  Aligned_cols=150  Identities=13%  Similarity=0.027  Sum_probs=130.7

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchH
Q 022513           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA  124 (296)
Q Consensus        45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (296)
                      ..+-++++.+++.....+...+..++.|.+.|| +|+|-.+++|.+++...++++++..                   ++
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~-------------------sy  159 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN-------------------SY  159 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc-------------------hh
Confidence            455667788999999999999999999999999 8999999999999999999988764                   45


Q ss_pred             HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHH
Q 022513          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSV  204 (296)
Q Consensus       125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~  204 (296)
                      ++++++|.++|+|.+....+..++++|.||+++  |   |++.++..-....+|-.+||.+++.+.+..|.+.+|++.++
T Consensus       160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~--e---r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~  234 (464)
T KOG3764|consen  160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDN--E---RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAI  234 (464)
T ss_pred             HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch--h---hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHH
Confidence            789999999999999999999999999999776  2   67888887778999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhcCCc
Q 022513          205 ATLIGLIALAIGKPF  219 (296)
Q Consensus       205 ~~~~~~i~~~~~~~~  219 (296)
                      ++++...+.+...+.
T Consensus       235 v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  235 VLLLDGALQLLVIEP  249 (464)
T ss_pred             HHHHHHHHHHheeCc
Confidence            887766655544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.9e-12  Score=120.66  Aligned_cols=147  Identities=16%  Similarity=0.210  Sum_probs=128.3

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchH
Q 022513           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA  124 (296)
Q Consensus        45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (296)
                      ++++++.+.+++.+.+..+..++++.+|+++|| +|-|+++..+.++..+++++...+...                 +.
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~-----------------~~  128 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI-----------------GF  128 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh-----------------cc
Confidence            588899999999999999999999999999999 699999999999999999888877532                 22


Q ss_pred             HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-cchhHHHHHHH
Q 022513          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID-QGWWLGFLISS  203 (296)
Q Consensus       125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~gw~~~f~i~~  203 (296)
                      ..+++.|+++|++.|...|++..+.+.+.|+++      |+++.+..+.+..+|..++..+++++.+. .||+..|++.+
T Consensus       129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            367899999999999999999999999999765      78888888888889999998889999887 99999999988


Q ss_pred             HHHHHHHHHHHh
Q 022513          204 VATLIGLIALAI  215 (296)
Q Consensus       204 ~~~~~~~i~~~~  215 (296)
                      ++.++..++++.
T Consensus       203 ~~g~i~~~~w~~  214 (466)
T KOG2532|consen  203 IVGLIWFILWFL  214 (466)
T ss_pred             HHHHHHHHHHHH
Confidence            877666555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=8.7e-12  Score=117.00  Aligned_cols=174  Identities=19%  Similarity=0.103  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC--c-hhHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--S-RFATCLVFGTLEV   93 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~--G-Rr~~i~~~~~~~~   93 (296)
                      ++.+....++....++++..+++.|+++++|++..+++...+.+.++..++.+++|+++|| +  + |++......+...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHH
Confidence            4444444555556666777899999988899999999999999999999999999999999 6  2 2332222111111


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      +..+.+...   +.              .+........+..|++..+.........+|.+|++.      |++..++.+.
T Consensus       324 ~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~  380 (434)
T PRK11663        324 LSVGSLWLM---PF--------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGL  380 (434)
T ss_pred             HHHHHHHHc---cc--------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHH
Confidence            111111111   10              011222222333343322222223455678877543      7899999999


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~  214 (296)
                      ..++|+.++|.+.+++.+..||+..|.+.+++.+++.+..+
T Consensus       381 ~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        381 FAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999989999999888777666554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.41  E-value=6.6e-12  Score=118.39  Aligned_cols=173  Identities=12%  Similarity=0.090  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC--chhHHH-HHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATC-LVFGTLE   92 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~--GRr~~i-~~~~~~~   92 (296)
                      ..+...+..++.....++...++|.|++++.|++..+++....++.++..++.+++|+++|| +  |||+.. .....+.
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLV  332 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHH
Confidence            35555556666667778888999999999999998888888888888888999999999999 6  555432 2222333


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      .++.+.+....                 ..+.....+..++.|.+..........+..|.+|++.      |++.+++.+
T Consensus       333 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~  389 (452)
T PRK11273        333 TIATIVYWLNP-----------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG  389 (452)
T ss_pred             HHHHHHHHHhc-----------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHH
Confidence            33332222111                 0112223334444444332222233455678888654      788888888


Q ss_pred             HHHHHHHHH-HHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          173 FATTLAAMI-GVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       173 ~~~~~G~~i-~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ...++|+.+ +|.+.+++.++.||+..|.+.+++.+++.+.
T Consensus       390 ~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        390 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            778888655 7999999999999999998877766555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.40  E-value=1.4e-11  Score=113.97  Aligned_cols=165  Identities=10%  Similarity=-0.009  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513           25 ALENMGFIANGISMVLYFKNEMHFDIA---GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI  101 (296)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~  101 (296)
                      +............++.|+.+..+....   ..+.+..+..++..++.+..|+++|| +|||+++..+..+..++.+.+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~  307 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence            333444445556777787765443222   23444455566777888899999999 79999998888777666554433


Q ss_pred             HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513          102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI  181 (296)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i  181 (296)
                      ..                   +...+++.+++.|++.+...+...+++.+..|++.      +++.++.++...++|..+
T Consensus       308 ~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~  362 (408)
T PRK09874        308 VQ-------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVT  362 (408)
T ss_pred             hc-------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHh
Confidence            21                   23456677888899998888888888877776544      688888888889999999


Q ss_pred             HHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       182 ~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      +|.+++++.++.||+..|.+.+++.+++.+..+.
T Consensus       363 gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        363 GPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999899999999888777766555433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.40  E-value=3.3e-11  Score=111.31  Aligned_cols=169  Identities=8%  Similarity=-0.048  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (296)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~   99 (296)
                      .....++.....++...+++.|+++.+|.+..+++.+.....++..++.++.|+++|| +|||+.+ .+..+..++...+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l  287 (390)
T PRK03545        210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHH
Confidence            3344445555556666788888888899999999998888889999999999999999 7987654 4444433333222


Q ss_pred             HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (296)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~  179 (296)
                      ....                  .+...+++..++.|++.+...+...+.+.|..|+ .      +++..+.+....++|.
T Consensus       288 ~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~  342 (390)
T PRK03545        288 LPAA------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMALFSGIFNIGI  342 (390)
T ss_pred             HHHh------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHHHHHHHHHHH
Confidence            2111                  1234556667778888776666667777776653 2      5677788777889999


Q ss_pred             HHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      .+||.+.+++.++.|++..|.+.+++.+++++....
T Consensus       343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888877776665543

>TIGR00897 2A0118 polyol permease family

Probab=99.39  E-value=2.7e-11  Score=112.41  Aligned_cols=174  Identities=12%  Similarity=0.056  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH-HHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-VFGTLEVL   94 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~-~~~~~~~i   94 (296)
                      ..+......++....+++...++|.|++ ++|++..+.+.+.....++..++.++.|+++|| +|||+.+. .+.+...+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~  300 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGI  300 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHH
Confidence            3455555667777888888899999885 589999998888888888999999999999999 79988764 23333333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +.+.+.......              ..+....++..++.|++.+...+ ..+...|..|+ +      |++.+++++..
T Consensus       301 ~~~~l~~~~~~~--------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~------~g~~~g~~~~~  358 (402)
T TIGR00897       301 FTLALYYIPQHF--------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-H------KGAAMSVLNLS  358 (402)
T ss_pred             HHHHHHHHHHcc--------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-h------hHHHHHHHHHH
Confidence            322222211000              11234455566677777665543 34555665442 2      78999999999


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      .++|+.++|.+.+++.+..||...+++.+++.+++.++.
T Consensus       359 ~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       359 AGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998899999888877766654443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.39  E-value=5.2e-12  Score=119.32  Aligned_cols=173  Identities=15%  Similarity=0.040  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc-CchhHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY-LSRFATCLVFGTLEVLS   95 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~-~GRr~~i~~~~~~~~ig   95 (296)
                      .+..+...++..+++++...+++.|+++ +|++..+++...++..++..++.+++|+++||+ +++++...++......+
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  321 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG  321 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence            4444555566666777777888999865 799999999999999899999999999999983 23344343333222222


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      ...+....                 ..+...+++.+++.|++.+...++..+++.|.+|+++      +++.+++++...
T Consensus       322 l~~ll~~~-----------------~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  378 (455)
T TIGR00892       322 LTHLLCAL-----------------AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVE  378 (455)
T ss_pred             HHHHHHHH-----------------hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHH
Confidence            22111111                 1134566778889999999888888999999988654      788889999999


Q ss_pred             HHHHHHHHhhhhhhcccc-chhHHHHHHHHHHHHHHHHH
Q 022513          176 TLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~~~~~~i~~  213 (296)
                      ++|..++|.+.+++.+.. +|+..|++.+++.+++.+..
T Consensus       379 ~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~  417 (455)
T TIGR00892       379 CCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL  417 (455)
T ss_pred             HHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence            999999999999998876 59999988877666555433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.39  E-value=1.8e-11  Score=127.84  Aligned_cols=144  Identities=9%  Similarity=0.055  Sum_probs=105.2

Q ss_pred             hhhhcCCCh-hhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCC
Q 022513           42 FKNEMHFDI-AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK  120 (296)
Q Consensus        42 l~~~l~~s~-~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  120 (296)
                      +++..+.+. ...++..+++.+...++.+++|+++|| +|||+++.......++..........                
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~----------------  104 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFH----------------  104 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            333444433 345667778888999999999999999 79999864422221111111111110                


Q ss_pred             cchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHH
Q 022513          121 GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFL  200 (296)
Q Consensus       121 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~  200 (296)
                      ..+++.+++.|+++|++.+...+...+++.|.+++++      ++...++.+.+.++|..+||.+++++....+|++.|.
T Consensus       105 ~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~  178 (1140)
T PRK06814        105 LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA  178 (1140)
T ss_pred             HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            1246789999999999999999999999999999765      7888899999999999999999999988889998884


Q ss_pred             HHHHHHHH
Q 022513          201 ISSVATLI  208 (296)
Q Consensus       201 i~~~~~~~  208 (296)
                      ..+++.++
T Consensus       179 ~~~~~~~~  186 (1140)
T PRK06814        179 LLMGIAVL  186 (1140)
T ss_pred             HHHHHHHH
Confidence            44443333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.38  E-value=2.2e-11  Score=112.80  Aligned_cols=161  Identities=14%  Similarity=-0.073  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ  102 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~  102 (296)
                      ..++....++....+++.|+++ .|++..+.+.......++..++.++.|+++|| +|||+.+..+.+...++.+.+...
T Consensus       228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~  305 (406)
T PRK11551        228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAA  305 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344445566777788888865 79999999999989999999999999999999 799999887665555554433221


Q ss_pred             hhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 022513          103 AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG  182 (296)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~  182 (296)
                      .                   +...+.+..++.|++.++..+...++..|.+|+++      |++..++++....+|..++
T Consensus       306 ~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g  360 (406)
T PRK11551        306 P-------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAG  360 (406)
T ss_pred             C-------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHH
Confidence            1                   22334455566777776677788888999998765      7888899988999999999


Q ss_pred             Hhhhhhhcccc-chhHHHHHHHHHHHHHH
Q 022513          183 VTAIVYVFIDQ-GWWLGFLISSVATLIGL  210 (296)
Q Consensus       183 ~~~~~~l~~~~-gw~~~f~i~~~~~~~~~  210 (296)
                      |.+.+++.++. +|...+.+...+.+++.
T Consensus       361 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        361 PLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             hhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence            99999987764 45555555544444433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.38  E-value=2e-11  Score=114.53  Aligned_cols=151  Identities=16%  Similarity=0.143  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH-HH
Q 022513           22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM-LT  100 (296)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~-~~  100 (296)
                      ...++....++++..++|.|+++.+|++..++++......++..++.+++|+++|| +|||+++..+..+..+...+ ..
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence            33444566677888999999999899999888888878888889999999999999 79999887765443322211 11


Q ss_pred             HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHH
Q 022513          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAA  179 (296)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~  179 (296)
                      ...  .              ...........++.+++.+...+....+..|.+|++.      |++.+++.+. +..+++
T Consensus       324 ~~~--~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g  381 (434)
T PRK15075        324 WLV--A--------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFG  381 (434)
T ss_pred             HHH--c--------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHh
Confidence            111  0              0112223333444556666666666688899999765      6777777544 334457


Q ss_pred             HHHHhhhhhhccccch
Q 022513          180 MIGVTAIVYVFIDQGW  195 (296)
Q Consensus       180 ~i~~~~~~~l~~~~gw  195 (296)
                      .++|.+.+++.+..|+
T Consensus       382 ~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        382 GFTPAISTWLIHVTGD  397 (434)
T ss_pred             hhHHHHHHHHHHhcCC
Confidence            7899999999887775

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.38  E-value=2.9e-11  Score=111.38  Aligned_cols=155  Identities=14%  Similarity=0.109  Sum_probs=114.8

Q ss_pred             HHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 022513           29 MGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSL  108 (296)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~  108 (296)
                      ..+.....+++.|+++ .|.+..+.+...+...++..++.++.|+++|| +|||+.+..+..+..++.+... ..     
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~~-----  285 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-SQ-----  285 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-hh-----
Confidence            3334445677888865 69998888888888888999999999999999 7999999888777776654432 10     


Q ss_pred             CCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 022513          109 HPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY  188 (296)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  188 (296)
                                      ......+.+.+++.+...|...+...|..|+++      +++..+.++...++|..++|.++++
T Consensus       286 ----------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G~  343 (381)
T PRK03633        286 ----------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTAM  343 (381)
T ss_pred             ----------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            122344556666666667778888888876432      4455566667789999999999999


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHH
Q 022513          189 VFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       189 l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      +.++.+|++.|.+.+.+.++..+..
T Consensus       344 l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        344 LMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHH
Confidence            9999999999988777666554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.37  E-value=4.3e-11  Score=108.99  Aligned_cols=178  Identities=17%  Similarity=0.088  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHH-HHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFAT-CLVFGTLEV   93 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~-i~~~~~~~~   93 (296)
                      |..+......++.....+....+++.|+++.+|.+..+++.......++..++.+++|+++|| +|||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence            345556666777777778888899999999999999999998888899999999999999999 799861 111111111


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.+...........            ............+.+.+.+ ..+...++.+|.+|+++      |++..++++.
T Consensus       294 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~  354 (399)
T TIGR00893       294 IAGLVLSLLMFATNY------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINS  354 (399)
T ss_pred             HHHHHHHHHHHHhcc------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHH
Confidence            111111111000000            0112222222333333434 67888899999998655      7889999998


Q ss_pred             HHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIA  212 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~  212 (296)
                      ..++|..++|.+.+++.+..| |+..|.+.+++.+++.+.
T Consensus       355 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       355 LGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             HHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence            899999999999999999888 998888777766655444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.37  E-value=1.1e-11  Score=118.88  Aligned_cols=149  Identities=15%  Similarity=0.102  Sum_probs=110.9

Q ss_pred             HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  115 (296)
                      .....++.+++|-+ ....|+...+.++..+..++.|.++|. ||||..++.+.++.++|.++.+.+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            45556788888886 456778888999999999999999999 7999999999999999999877553            


Q ss_pred             CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccch
Q 022513          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGW  195 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw  195 (296)
                             +...++++..+.|+|.|... .....++|..|.+.      |.................++.++..+..+.+|
T Consensus       130 -------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W  195 (599)
T PF06609_consen  130 -------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGW  195 (599)
T ss_pred             -------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence                   45679999999999977665 45566899998654      44444433333333333455555555556789


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 022513          196 WLGFLISSVATLIGLIA  212 (296)
Q Consensus       196 ~~~f~i~~~~~~~~~i~  212 (296)
                      ||.|++..+...++++.
T Consensus       196 Rw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  196 RWIFYIFIIWSGIALVL  212 (599)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            99999888766665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.37  E-value=2.9e-12  Score=99.65  Aligned_cols=129  Identities=18%  Similarity=0.200  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcC
Q 022513           59 NFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGC  138 (296)
Q Consensus        59 ~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~  138 (296)
                      .+.++..++.++.|+++|| +|||+.+..+..+..++.+......                   +...+.+.+++.|++.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~   65 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS-------------------NITVLIIARFLQGFGA   65 (141)
T ss_pred             eehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHH
Confidence            4456778889999999999 7999999998888887766654432                   2456777889999999


Q ss_pred             cCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513          139 GGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       139 g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      +...+....+..|.+|+++      |++..+..+....+|..+++.+.+++.+..+|++.+.+..+..++..+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        66 AFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            8888889999999998654      77888888889999999999999999888899988888776655554443

>PRK12382 putative transporter; Provisional

Probab=99.37  E-value=1.9e-11  Score=112.78  Aligned_cols=160  Identities=20%  Similarity=0.241  Sum_probs=120.9

Q ss_pred             HHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513           26 LENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS  105 (296)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~  105 (296)
                      +....+..+..+.+.|+++ .+++.  .+.....+.++..++.++.|++.|| +||||.+..+..+..++.+++....  
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~--  300 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP--  300 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc--
Confidence            3445555666777788764 45543  4455556677778899999999999 7999999888887777765544321  


Q ss_pred             cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513          106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA  185 (296)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~  185 (296)
                                       +...+++..++.|++.+...+...+...|.+|+++      |++.+++++...++|..++|.+
T Consensus       301 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~  357 (392)
T PRK12382        301 -----------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPL  357 (392)
T ss_pred             -----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                             23455667788888888777777788888887543      7899999999999999999999


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513          186 IVYVFIDQGWWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       186 ~~~l~~~~gw~~~f~i~~~~~~~~~i~~~  214 (296)
                      .+++.++.||+..|.+.+++.+++.++.+
T Consensus       358 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        358 AGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988877766655543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.36  E-value=2.6e-11  Score=110.80  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=107.3

Q ss_pred             hHHHHhhhhcC--CChhhHHHHHHH--HH---HHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 022513           37 SMVLYFKNEMH--FDIAGASNTLTN--FF---GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH  109 (296)
Q Consensus        37 ~l~~yl~~~l~--~s~~~a~~~~~~--~~---~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~  109 (296)
                      ++..++.++..  .++++.+...+.  +.   +...++.++.|+++|| +|||+++..+.++..++.+++..+.......
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~   92 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIG   92 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence            34445555443  334444443332  22   2234688999999999 7999999999999988887766543211000


Q ss_pred             CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513          110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  189 (296)
                                 ......++++|++.|++.+...+..+++++|.+|+++      |+...+..+.+..+|..+++.+...+
T Consensus        93 -----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883        93 -----------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             -----------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0012357889999999999999999999999998665      67777888888888888888766544


Q ss_pred             c--------cccchhHHHHHHHHHHHHHH
Q 022513          190 F--------IDQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       190 ~--------~~~gw~~~f~i~~~~~~~~~  210 (296)
                      .        +..+|++.|.+.+++.++..
T Consensus       156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       156 SYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            2        35689999987766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.36  E-value=5.4e-11  Score=107.45  Aligned_cols=137  Identities=15%  Similarity=0.117  Sum_probs=116.2

Q ss_pred             HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 022513           32 IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP  111 (296)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~  111 (296)
                      ......+.+.+++.++++..+++++..++..+.+++++..|++.+| +|+|+.++.++.++++|..++.-++.       
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~-------  100 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS-------  100 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence            4566778889999999999999999999999999999999999999 79999999999999999988875542       


Q ss_pred             CCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513          112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (296)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  191 (296)
                               ...+..++++.++.+.|.|..+++.+++++.+.+++...      .-.+..+....+|+.++|.+++++..
T Consensus       101 ---------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~------~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         101 ---------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA------FRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             ---------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH------HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                     346788999999999999999999999999999875422      22345566678899999988877644

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.36  E-value=3.1e-11  Score=112.46  Aligned_cols=159  Identities=11%  Similarity=-0.059  Sum_probs=121.5

Q ss_pred             HHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 022513           31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP  110 (296)
Q Consensus        31 ~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~  110 (296)
                      ..+...+++.|+++.+|.+....+.+.+...++..++.++.++++|| .++++.+..+.++..++.+++....       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc-------
Confidence            34566788899988899999999999888899999999999999999 6888888887777666655443221       


Q ss_pred             CCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 022513          111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (296)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~  190 (296)
                                  +.....++.++.|++.+...+...++..|.+|++.      |++.+++++...++|..+++.+.+++.
T Consensus       311 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~  372 (417)
T PRK10489        311 ------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLG  372 (417)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence                        23445566777788777666666788888888543      788899988888999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHh
Q 022513          191 IDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       191 ~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      +..|++..+.+.+++.++..++...
T Consensus       373 ~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        373 AMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHhchhhHHHHHHHHHHHHHHHHHH
Confidence            9888887777666554443333333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.36  E-value=4.8e-11  Score=111.85  Aligned_cols=166  Identities=16%  Similarity=0.049  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 022513           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAY  104 (296)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~  104 (296)
                      +.....+|+...++|.|+++++|++..+++...++...+..++.++.|+++|| +|||+.+.++.++..+..+.......
T Consensus       253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~  331 (432)
T PRK10406        253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQ  331 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467788899999999999999998888887777777778888899999999 79999887766544333222211110


Q ss_pred             ccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH-HHHHHHH
Q 022513          105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT-LAAMIGV  183 (296)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~-~G~~i~~  183 (296)
                       .              ..+....+....+..++.+...+....+.+|.||++.      |++.+++.+...+ +++..+|
T Consensus       332 -~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~~p  390 (432)
T PRK10406        332 -N--------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGSAE  390 (432)
T ss_pred             -c--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhHHH
Confidence             0              0011111111122222233333456678899999876      7888888775544 3344577


Q ss_pred             hhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          184 TAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       184 ~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      .+.+++.....|...+.+.++..+++.+.
T Consensus       391 ~~~~~l~~~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        391 YVALSLKSIGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            77776643323555555554444444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.35  E-value=5.8e-11  Score=113.25  Aligned_cols=175  Identities=8%  Similarity=0.070  Sum_probs=129.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-----chhHH-H
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-----SRFAT-C   85 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-----GRr~~-i   85 (296)
                      ..+|..+.++...+......+.....++.++++ .|.|.++.+....+ ... .++.++.|+++|| +     ||||. +
T Consensus         9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~l   84 (491)
T PRK11010          9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDR-YTPPFLGRRRGWL   84 (491)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHc-ccccCCCCchHHH
Confidence            345556667777777777777777778888754 58888888775222 222 3688999999999 7     99986 5


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhh
Q 022513           86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA  165 (296)
Q Consensus        86 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~  165 (296)
                      ..+.+...++.+.+....  +              ..+...+.+.+++.+++.+...+...++..|.+|+++      |+
T Consensus        85 l~~~i~~~~~~~~~a~~~--~--------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg  142 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLE--P--------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RG  142 (491)
T ss_pred             HHHHHHHHHHHHHHHHcC--C--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hH
Confidence            566665656655544431  1              2345677778889999888888899999999998554      67


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhcc-ccchhHHHHHHHHHHHHHHHH
Q 022513          166 SYFNFYLFATTLAAMIGVTAIVYVFI-DQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       166 ~~~~~~~~~~~~G~~i~~~~~~~l~~-~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +..++...+..+|..+++.+..++.+ ..|||..|++.+++.++..+.
T Consensus       143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        143 AGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            77888888899999999988888887 469999999887766554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.34  E-value=7.4e-11  Score=108.74  Aligned_cols=155  Identities=11%  Similarity=-0.081  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh----HHHHHHHHHHHHHHHHH
Q 022513           24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF----ATCLVFGTLEVLSLVML   99 (296)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr----~~i~~~~~~~~ig~~~~   99 (296)
                      .+....+...+.++++.|++ ++|.|..+.+++.+++.+...++.+++|+++|| +||+    +.+.+...+..   +..
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~---~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLFA---VAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHHH---HHH
Confidence            44445555556678888885 579999999999999999999999999999999 7984    33322221111   111


Q ss_pred             HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (296)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~  179 (296)
                      ...                  ..+.+.+++.|++.+++.+...+...++..|..+ +       |+..++......++|.
T Consensus        88 ~~~------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~-~-------~~~a~~~~~~~~~lg~  141 (382)
T PRK11128         88 WFG------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK-Q-------IGLDYGKVRLWGSIAF  141 (382)
T ss_pred             HHh------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh-h-------ccCCcchHHHHHHHHH
Confidence            111                  1245677788999999988888887777666421 1       3455555666778999


Q ss_pred             HHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513          180 MIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      .++|.+++++.++.||+..|++.++..++.
T Consensus       142 ~igp~lgg~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128        142 VIGSALTGKLVSWFGEQAILWILTAGVASM  171 (382)
T ss_pred             HHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            999999999999999999998776544433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.34  E-value=3.7e-11  Score=112.31  Aligned_cols=171  Identities=15%  Similarity=0.117  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhH-HHHHHHHHHHHHHHHHH
Q 022513           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFA-TCLVFGTLEVLSLVMLT  100 (296)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~-~i~~~~~~~~ig~~~~~  100 (296)
                      +..+.....+..+++.|+++++|+++.+++++.++..+...+..|+.|+++||.   +|||| .++++.....++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            344555556667889999999999999999999999999999999999999972   58855 56667777776666554


Q ss_pred             HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 022513          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM  180 (296)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~  180 (296)
                      ...   ...          .......+++.+++.+++.+....+..++.+|..++.  ++   |++..++.+...++|+.
T Consensus        89 ~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~---R~~~~~~~~~~~~~g~~  150 (437)
T TIGR00792        89 TTP---DFS----------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--RE---RESLSTFRRFGATLGGL  150 (437)
T ss_pred             hCC---CCC----------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--HH---HHHHHHHHHHHHHHHHH
Confidence            332   110          0123455666677778888877777788888887532  23   56666776667777776


Q ss_pred             HHHhhhhhhc-------cccchhHHHHHHHHHHHHHHHHH
Q 022513          181 IGVTAIVYVF-------IDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       181 i~~~~~~~l~-------~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      +++.+.+.+.       +..+|++.+.+.+++.++..+..
T Consensus       151 l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       151 LVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC  190 (437)
T ss_pred             HHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            6655443332       24689988887776655544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.33  E-value=1.5e-11  Score=114.81  Aligned_cols=155  Identities=13%  Similarity=-0.003  Sum_probs=115.2

Q ss_pred             HHhHHhHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 022513           32 IANGISMVLYFKNEM---HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSL  108 (296)
Q Consensus        32 ~~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~  108 (296)
                      ......++.|+.+.+   +.+..+.+.+.++..++..++.+++|+++|| +|||+.+..+.++..++.+++..+.     
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~-----  313 (420)
T PRK09528        240 DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT-----  313 (420)
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc-----
Confidence            334445677776543   5566677788888888888999999999999 7999999888887777766654432     


Q ss_pred             CCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHHhhhh
Q 022513          109 HPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YLFATTLAAMIGVTAIV  187 (296)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~  187 (296)
                                    +...+++.+.+.+++.+...+....++.|.+|++.      +++.++. ++...++|..+++.+.+
T Consensus       314 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G  373 (420)
T PRK09528        314 --------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAG  373 (420)
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHH
Confidence                          23456677888888877766777788888888654      4555443 45678899999999999


Q ss_pred             hhccccchhHHHHHHHHHHHHHHHH
Q 022513          188 YVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       188 ~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ++.+..||+..|.+.+++.++..++
T Consensus       374 ~l~~~~G~~~~f~~~~~~~~i~~~~  398 (420)
T PRK09528        374 NLYDSIGFQGTYLILGGIVLLFTLI  398 (420)
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHHH
Confidence            9999999999998877666554433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.33  E-value=4.8e-11  Score=112.62  Aligned_cols=197  Identities=15%  Similarity=0.089  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh---cCchhHHHHHH-HHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFATCLVF-GTLE   92 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr---~~GRr~~i~~~-~~~~   92 (296)
                      ++.+....+...+++-....+++.|+ +++|.+....+.+..+..+...+.+++.|+++||   .+||||.++.+ .+..
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            34444455555666544456666665 6799999999999999999999999999999994   27999998875 4445


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      +++.+++..+.........+-  +.-+.......+.++..+..++.....++..++++|+.|+++++    ++...++..
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~--~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~  158 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNL--DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFS  158 (477)
T ss_pred             HHHHHHHHhCchhhhhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHH
Confidence            555555444321110000000  00000011133445555566677777888899999999976521    356777888


Q ss_pred             HHHHHHHHHHHhhhhhh--ccc-------------cchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513          173 FATTLAAMIGVTAIVYV--FID-------------QGWWLGFLISSVATLIGLIALAIGKPFY  220 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l--~~~-------------~gw~~~f~i~~~~~~~~~i~~~~~~~~~  220 (296)
                      ...++|+.+|+.++++.  .+.             .+.+..|.+.+++.+++.++.+...++.
T Consensus       159 ~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       159 FFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            88999999998877654  111             1467889888887777666555544443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.33  E-value=3.5e-11  Score=109.54  Aligned_cols=154  Identities=12%  Similarity=0.093  Sum_probs=108.2

Q ss_pred             HHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc----CchhHHH-HHHHHHHHHHHHHHHHHhhccCCC
Q 022513           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY----LSRFATC-LVFGTLEVLSLVMLTIQAYSKSLH  109 (296)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~----~GRr~~i-~~~~~~~~ig~~~~~~~~~~~~~~  109 (296)
                      .....+.+.+++|+|.++.+..... .....+ .++.|+++||+    +||||.+ +.+.++..+....+.+..  +   
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--~---   79 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--P---   79 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC--c---
Confidence            3334445566789999999887644 333333 88999999994    3999975 455555555544443221  1   


Q ss_pred             CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513          110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  189 (296)
                                 ..+...+....++.+++.+...+...++++|.+|+++      |+...++...+.++|..+++.+++++
T Consensus        80 -----------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        80 -----------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1234445555566777777778888999999998654      77888888888999999999988888


Q ss_pred             ccccc--------hhHHHHHHHHHHHHHHHH
Q 022513          190 FIDQG--------WWLGFLISSVATLIGLIA  212 (296)
Q Consensus       190 ~~~~g--------w~~~f~i~~~~~~~~~i~  212 (296)
                      ....+        ||..|.+.++..++..+.
T Consensus       143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901       143 ASPEFANTGLITLWGYIFFWTALLILPGLLV  173 (356)
T ss_pred             hhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            77777        999998888766655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.33  E-value=6.1e-11  Score=110.96  Aligned_cols=160  Identities=15%  Similarity=0.000  Sum_probs=109.2

Q ss_pred             HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 022513           39 VLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC  118 (296)
Q Consensus        39 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~  118 (296)
                      .++..+++|++..+++.......++..++.+++|+++|| +|||+.+.++.++..++.+++........ ..       .
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~  377 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV-TG-------S  377 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc-CC-------c
Confidence            344456789988888888888888899999999999999 79999999888777777666553211000 00       0


Q ss_pred             CCcchHHHHHHHH-HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhH
Q 022513          119 LKGAIAAYFYGSL-YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWL  197 (296)
Q Consensus       119 ~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~  197 (296)
                      +.......+.... +..+.+.+ ..+....+.+|.+|++.      |++..+..+...++|+.+++.+.+++.++.+|++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~  450 (481)
T TIGR00879       378 SKSSGNVAIVFILLFIAFFAMG-WGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLESIGVGG  450 (481)
T ss_pred             ccchhHHHHHHHHHHHHHHHcc-ccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            0000122222222 22223322 34666677799998654      7888888888999999999999999988888998


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 022513          198 GFLISSVATLIGLIALA  214 (296)
Q Consensus       198 ~f~i~~~~~~~~~i~~~  214 (296)
                      .|++.+++.+++.+..+
T Consensus       451 ~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       451 VFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             eehhHHHHHHHHHHHHh
Confidence            88877776665555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.1e-10  Score=106.68  Aligned_cols=177  Identities=17%  Similarity=0.126  Sum_probs=134.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +.++..+...++...+.|...+|+.+|+++..|+|.+..+++...+.++..+|.+++|+++||  +.|+++.....+..+
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            446677778888888889999999999999999999999999999999999999999999999  778888777666666


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      ..+.+....                  .+.....+..++.|+..+........-.++..|++       ++...+++...
T Consensus       289 ~~l~l~~~~------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~-------~~~a~sl~~aa  343 (394)
T COG2814         289 ALLALTFTG------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPDA-------ADLAGSLNVAA  343 (394)
T ss_pred             HHHHHHHhc------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc-------hHHHHHHHHHH
Confidence            555544432                  12344555555666666555444445455533332       45666777788


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  218 (296)
                      .|+|..+|..+++.+.++.|+....+..+++.++++++.+...+
T Consensus       344 ~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         344 FNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988888877766555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.33  E-value=1.4e-10  Score=106.85  Aligned_cols=161  Identities=9%  Similarity=-0.082  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH-HHHHH
Q 022513           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL-EVLSL   96 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~-~~ig~   96 (296)
                      +.+....+....++-...++++.|++ ++|+|..+.+.+.+.+.+...+++++.|+++|| +||++.......+ ..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence            33444455555554445577888885 689999999999999999999999999999999 6985433211111 11111


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +.+...                  ..+.+.+++.|.+.+.+.+...+...++..|. +       ++|+..++......+
T Consensus        85 ~~~~~~------------------~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-------~~~~~~~g~~~~~~s  138 (382)
T TIGR00902        85 AAFSAG------------------AHNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-------KQFGLDYGKVRLIGS  138 (382)
T ss_pred             HHHHHh------------------hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-------HHcCCCccHHHHHHH
Confidence            111111                  12456788889888888887777777765442 1       125677788788899


Q ss_pred             HHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVAT  206 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~  206 (296)
                      +|..++|.+++++.+..||+..|.+.++..
T Consensus       139 lG~~~g~~l~g~l~~~~g~~~~f~~~~~~~  168 (382)
T TIGR00902       139 AAFIIGSALFGGLIGMFDEQNILAILTAGL  168 (382)
T ss_pred             HHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            999999999999999999999988765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=1.3e-10  Score=107.18  Aligned_cols=169  Identities=9%  Similarity=-0.049  Sum_probs=133.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |..+..++..++...+.....++.+.|+++ +|.+..+.+...+...++..++.++.+++.|| +|+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence            445555666666677777778889999965 89999999998888888888899999999999 7999999999999888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH-H
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-F  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~-~  173 (296)
                      +.+.+....                   +...+++...+.|+..|...+....++.+. |+++      +++..+.++ .
T Consensus       283 ~~~~~~~~~-------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~  336 (382)
T TIGR00902       283 RWAIIGAIE-------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNAL  336 (382)
T ss_pred             HHHHHHhHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHH
Confidence            877665432                   345677788999999999999988999886 6443      567777765 4


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ...+|..+++.++|++.++.|+ ..|.+.+++.++++++
T Consensus       337 ~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       337 AMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            6789999999999999998886 5566666655555433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PTZ00207 hypothetical protein; Provisional

Probab=99.32  E-value=8.7e-11  Score=113.27  Aligned_cols=152  Identities=14%  Similarity=0.023  Sum_probs=112.2

Q ss_pred             HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 022513           32 IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP  111 (296)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~  111 (296)
                      |+...+. ..+++++|+|..+.+++.++.. ...++.+++|+++|| +|||+++.++.++..+|.+++.++.. ...   
T Consensus        44 y~fsv~s-~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~-~~i---  116 (591)
T PTZ00207         44 YAFNLIS-GAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQ-EVI---  116 (591)
T ss_pred             HHHHHHH-HHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhc-ccc---
Confidence            4554333 4578899999999888777643 334566778999999 79999999999999999998887621 000   


Q ss_pred             CCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH-HHhhhhhhc
Q 022513          112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI-GVTAIVYVF  190 (296)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~l~  190 (296)
                               ..+.+.+++.|++.|+|.+...+.....+.+.||+ +      |+...++......+|+.+ +++..+++.
T Consensus       117 ---------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        117 ---------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N------RGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             ---------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     12467888999999999988888888888999973 2      788999988888999875 555555554


Q ss_pred             cccchhHHHHHHHHHHHH
Q 022513          191 IDQGWWLGFLISSVATLI  208 (296)
Q Consensus       191 ~~~gw~~~f~i~~~~~~~  208 (296)
                      +  +|+..|++.+++.++
T Consensus       181 ~--~~~~~fl~l~vl~~v  196 (591)
T PTZ00207        181 D--NTSAYFFFLMSFALV  196 (591)
T ss_pred             H--hHHHHHHHHHHHHHH
Confidence            3  466666655554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.31  E-value=1.2e-10  Score=108.04  Aligned_cols=165  Identities=11%  Similarity=0.067  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-----chhH-HHHHHHHHHHH
Q 022513           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-----SRFA-TCLVFGTLEVL   94 (296)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-----GRr~-~i~~~~~~~~i   94 (296)
                      +...+.+...+.-...-+|.|+++ .|+|.++.+++..+...  .+..++.|+++|| +     |||| .+.++.++..+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence            334555666655566788888876 49999999988655543  6889999999999 7     8876 56666666666


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +...+....  +              ..+...+++..++.++..+...+...++..|.+|+++      |++..+....+
T Consensus        81 ~~~~l~~~~--~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g  138 (402)
T PRK11902         81 SIAAMAFCP--P--------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLG  138 (402)
T ss_pred             HHHHHHhcC--c--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHH
Confidence            655544331  1              1234555555566777777788889999999988654      67777777778


Q ss_pred             HHHHHHHHHhhhhhhccc-cchhHHHHHHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFID-QGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~-~gw~~~f~i~~~~~~~~~i  211 (296)
                      .++|..+++.+..++.+. .|||..|++.++..++..+
T Consensus       139 ~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        139 YRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            888999988888888775 5999999987776554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.30  E-value=1.6e-10  Score=110.26  Aligned_cols=177  Identities=17%  Similarity=0.171  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHH-HHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLT-NFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~-~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      +......++...+.+....+.++|+.+++|++..+.+.... ...++..++.+++|+++|| +|||+.+.++.++..++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence            33333344555555566677888888889999999998874 4557888999999999999 799998877666555444


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +.+......               ..+...+.+..++..+..|...+...++..+..+++.      .++.++..+...+
T Consensus       304 l~~~~l~~~---------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~  362 (491)
T PRK11010        304 AGYWLLSIT---------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSA  362 (491)
T ss_pred             HHHHHHHhc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHH
Confidence            333221110               0122223333444333334334455677777777654      4566777777789


Q ss_pred             HHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~  216 (296)
                      +|..+++.+.+++.+..||+..|.+.+++.+.+++.....
T Consensus       363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888889999998999999988887777765554443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.30  E-value=1.4e-10  Score=109.82  Aligned_cols=184  Identities=17%  Similarity=0.093  Sum_probs=142.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh--HHHHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF--ATCLVFGT   90 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr--~~i~~~~~   90 (296)
                      +.|.+..-++..++.+-+...+......|.++++|++..+...+..+.++.+.+|++++|++.|| +|.|  +++.++.+
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence            34566666667777777888888999999999999999998888888899999999999999999 7998  88887776


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~  170 (296)
                      ++.+-.+.-.+.. .+...          ...+.+.+++.-++.|+..|+.++..-++.+|+.|+.+      .+.+|++
T Consensus       358 ~~~~i~~~g~~G~-~~~~~----------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgl  420 (477)
T PF11700_consen  358 LWIIIPLYGLFGF-WPSFF----------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGL  420 (477)
T ss_pred             HHHHHHHHHHHHh-hhccc----------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHH
Confidence            6633222211100 00000          01234557777778999999999999999999999765      5899999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 022513          171 YLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       171 ~~~~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~  214 (296)
                      |.+..-..+.+||++.+.+.+..| -|.++....++.++++++++
T Consensus       421 y~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  421 YAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988765 68888877777777776653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.29  E-value=5.9e-11  Score=111.44  Aligned_cols=178  Identities=11%  Similarity=0.028  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      ++......++.....+++..++|.|+++..|++..++++......+++.++.+++|+++|| +|+++....+.....+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~  331 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVT  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHH
Confidence            4444455556566678888999999999899999999988888888999999999999999 665443223332222111


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +........+              ..+........++.|++..+..........|.+|++.      |++..++++...+
T Consensus       332 ~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  391 (438)
T TIGR00712       332 IAVIVYWMNP--------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGY  391 (438)
T ss_pred             HHHHHHHhcC--------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHH
Confidence            1111100001              0111222333344444332222222345678888654      7888888877777


Q ss_pred             HHH-HHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          177 LAA-MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       177 ~G~-~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      +|+ .++|.+.+++.++.||..+|.+..++.+++.+..+.
T Consensus       392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            764 679999999999889998888776655555544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.28  E-value=9.5e-11  Score=106.38  Aligned_cols=186  Identities=13%  Similarity=0.053  Sum_probs=134.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      .+..|.+....+..-.++.++..+++.|++++++.++.+++.....+.....+..+++|+++|| +|.+|++.+....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence            4567888888888888899999999999999999999999999999999999999999999999 799888888887777


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++..+......  ...          +..+...+++..+..++..|.-...+..++...||.+       .+...++...
T Consensus       296 ~~~~~l~~~~~--~~~----------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga  356 (417)
T COG2223         296 LAAALLSLFLT--GFG----------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGA  356 (417)
T ss_pred             HHHHHHHcccc--ccc----------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHH
Confidence            77666554321  100          0122333333333444444444555556666666542       3566666666


Q ss_pred             HHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                      ..++|++.-|...+...+..| +..+|++...+.+++.++.+....|
T Consensus       357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888877878887777766 8888888887777776655444333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.28  E-value=1.6e-10  Score=109.86  Aligned_cols=172  Identities=10%  Similarity=0.015  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-----HHHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-----TCLVFGTLE   92 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-----~i~~~~~~~   92 (296)
                      +.+.+..++.....++...+++.|+.+++|++..+++...+...++..++.+++|+++|| +|||+     .........
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHH
Confidence            333333333444445667788999988999999999999999999999999999999999 78762     222111111


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      +.+........                 ..+.....+..++.+++.+...+...++..|..|.       .+++..++.+
T Consensus       334 l~~i~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~  389 (476)
T PLN00028        334 LGGVFCIWLGR-----------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-------SLGVISGLTG  389 (476)
T ss_pred             HHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-------hchhhhhhhh
Confidence            11111111111                 01223333444455555444444444555555431       2677777766


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      ...++|+.+++.+.+ ..+..+|+.+|.+.+++.+++.++.+.
T Consensus       390 ~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        390 AGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             ccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence            666777777665543 223446888998887776666555444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.26  E-value=3.8e-10  Score=105.15  Aligned_cols=144  Identities=15%  Similarity=0.006  Sum_probs=101.5

Q ss_pred             HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 022513           32 IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP  111 (296)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~  111 (296)
                      +.+..+++.|+++ .|.+..+.+.......++..++.+++|+++|| +|||+.+..+.++..++.+++....        
T Consensus       248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~--------  317 (426)
T PRK12307        248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIP--------  317 (426)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            3456778888876 58998888888888888999999999999999 7999998888776655544333211        


Q ss_pred             CCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513          112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (296)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  191 (296)
                               ......+.+..+..+++..+..+..+.++.|.+|++.      |++..+..+...++|+.++|.+.+++.+
T Consensus       318 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        318 ---------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             ---------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence                     0111111111222223333344566778889998654      7888888888889999999999999988


Q ss_pred             ccchhHHHH
Q 022513          192 DQGWWLGFL  200 (296)
Q Consensus       192 ~~gw~~~f~  200 (296)
                      ..|+.....
T Consensus       383 ~~g~~~~~~  391 (426)
T PRK12307        383 TMGLGAALT  391 (426)
T ss_pred             cccHHHHHH
Confidence            887654433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.25  E-value=9.4e-10  Score=102.07  Aligned_cols=165  Identities=12%  Similarity=-0.010  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      ++.......+.....+......+.|+.+++|+++.+.+.......++..++.++.|+++|| +|||+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            3444444444445455555667888888899999888877776677788899999999999 799999998888877777


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      ++........              ..+...++++.++.|+|.+...+..........+ ++      +++..+.++....
T Consensus       296 ~~~~~~~~~~--------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~  354 (406)
T PRK15402        296 LLAALATVIS--------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTVSAAMGMLSM  354 (406)
T ss_pred             HHHHHHHHcc--------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHHHHHHHHHHH
Confidence            6665432111              1234456677888888888776666554433322 22      6788888888888


Q ss_pred             HHHHHHHhhhhhhccccchhHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFLISS  203 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~  203 (296)
                      +|..+|+.+.+++.+..++....+...
T Consensus       355 ~~~~~g~~~~~~l~~~~~~~~~~~~~~  381 (406)
T PRK15402        355 LIFTVGIELSKHAYLGGGNGLFNLFNL  381 (406)
T ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHH
Confidence            999999999998877766554433333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.25  E-value=2.4e-10  Score=106.63  Aligned_cols=164  Identities=7%  Similarity=-0.131  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHH-HHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFAT-CLVFGTLEV   93 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~-i~~~~~~~~   93 (296)
                      ..+......++....++++.+++|.|+++ ..+.+..+++.......++..++.+++|+++|| +|||+. +....++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHH
Confidence            34455556677777888999999999977 357788888888888899999999999999999 797774 333333333


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.++ ....  .              . . ...+.+..+.++|.....+.......|.+|++.      |++.+++.+.
T Consensus       322 ~~~~~-~~~~--~--------------~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~  376 (412)
T TIGR02332       322 AGWLL-ASAT--D--------------H-N-LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINA  376 (412)
T ss_pred             HHHHH-HHhc--C--------------C-H-HHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHH
Confidence            33221 1111  0              1 1 111222223333332222333344456666443      7889999999


Q ss_pred             HHHHHHHHHHhhhhhhcccc-chhHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVA  205 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~  205 (296)
                      ..++|+.++|.+.+.+.+.. +|+.++++.+++
T Consensus       377 ~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       377 TGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            99999999999999988876 488888766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.24  E-value=3.1e-10  Score=101.94  Aligned_cols=163  Identities=10%  Similarity=-0.024  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNE--MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~   92 (296)
                      +..+...+..++....-.++..+++.|+++.  +|+++.+++...+.+.++..++.++++++.|| +|+||++.++.++.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHH
Confidence            3444444444554445567778999999853  79999999999999999999999999999999 79999988888777


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      +++.++.....                  ..  ....+.++.|++.+...|...+...+.+|++.     .+++.  .. 
T Consensus       219 ~~~~~l~~~~~------------------~~--~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~asa--i~-  270 (310)
T TIGR01272       219 VLLSIGAALTH------------------GY--VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQGSG--IL-  270 (310)
T ss_pred             HHHHHHHHHcC------------------CH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhHH--HH-
Confidence            77654433321                  11  12235557889999999998888888887542     12332  32 


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT  206 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~  206 (296)
                      ....+|+.+.|.+.|.+.|..|.+.+|+++.++.
T Consensus       271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       271 CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            4567899999999999999888888887665543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10504 putative transporter; Provisional

Probab=99.23  E-value=4.7e-10  Score=106.09  Aligned_cols=156  Identities=11%  Similarity=-0.006  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      .....+...++...++.......+.|++..+|.++.+++.......++..++.++.|+++|| +|||+++..+..+..++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALV  340 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence            34445555666666655555667778887889999999888887777788888999999999 79999999888877766


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      ..++.....                ......+.+..++.|++.+...+....+..+.+|++.      ++..++++++..
T Consensus       341 ~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~  398 (471)
T PRK10504        341 SLLFMLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIM  398 (471)
T ss_pred             HHHHHhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHH
Confidence            555443210                1122333445666778877777778888888888654      678888888889


Q ss_pred             HHHHHHHHhhhhhhccccc
Q 022513          176 TLAAMIGVTAIVYVFIDQG  194 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~~g  194 (296)
                      .+|..+|+.+.+.+.+..+
T Consensus       399 ~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        399 QLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999888877654433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.22  E-value=2.2e-10  Score=107.01  Aligned_cols=161  Identities=16%  Similarity=0.066  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |..+..++..++...+++......+.|.+..++ +....+.......++..++.++.++++|| +|||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            344555555666666665555555555555555 45556666677788889999999999999 7999999999888877


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChh-hhhhhhhhHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~-~~~~r~~~~~~~~~  173 (296)
                      +.+.+....                  .+...+++..++.+++.+...+...++++|..|.++.+ .++.++..++.+++
T Consensus       300 ~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  361 (437)
T TIGR00792       300 GYLIFFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF  361 (437)
T ss_pred             HHHHHHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence            766554321                  12344556667788888888888899999987743211 11236888888889


Q ss_pred             HHHHHHHHHHhhhhhhccccch
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGW  195 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw  195 (296)
                      ...+|..+++.+.+++.+..||
T Consensus       362 ~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       362 VRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999998887655444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.22  E-value=9.7e-11  Score=107.21  Aligned_cols=142  Identities=11%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHH
Q 022513           48 FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYF  127 (296)
Q Consensus        48 ~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (296)
                      +++...+.+..+..++..+|+++.||++|+ +|||+++...++++++++++..++.    ...+        ...-..++
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~----~~~~--------~~~~m~~L  147 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV----GTTS--------PLGVMMTL  147 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC----CCCC--------CcchhhHH
Confidence            566677788888899999999999999999 7999999999999999988544332    1110        01346778


Q ss_pred             HHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH----HHHHHHHHHHHhhhhhhcc-----------c
Q 022513          128 YGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL----FATTLAAMIGVTAIVYVFI-----------D  192 (296)
Q Consensus       128 ~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~----~~~~~G~~i~~~~~~~l~~-----------~  192 (296)
                      ...|+++|+|.|+-.|...+..+|....+.      ||...+...    ++.-.|+.++-++..-...           .
T Consensus       148 ~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld  221 (538)
T KOG0252|consen  148 CFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLD  221 (538)
T ss_pred             HHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHH
Confidence            889999999999999999999999876443      555554433    3444444444333322211           1


Q ss_pred             cchhHHHHHHHHHHHH
Q 022513          193 QGWWLGFLISSVATLI  208 (296)
Q Consensus       193 ~gw~~~f~i~~~~~~~  208 (296)
                      .-||..+.+.++..++
T Consensus       222 ~vWRl~~glg~vpa~~  237 (538)
T KOG0252|consen  222 GVWRIIFGLGAVPALL  237 (538)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            2388888776665443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.21  E-value=7.8e-10  Score=105.88  Aligned_cols=180  Identities=17%  Similarity=0.151  Sum_probs=129.9

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~   90 (296)
                      .+..|.+|..   .++.+++......-++-++. ++.-|+...+++..+..+-..+..+++|.++|| +.|||+++.+-+
T Consensus         9 ~~~Fr~lw~a---~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~   83 (524)
T PF05977_consen    9 NRNFRRLWIA---QLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQL   83 (524)
T ss_pred             CchHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHH
Confidence            3344545543   44444443333233333333 445677778888888888888999999999999 799999999988


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~  170 (296)
                      +..+..+.+.+.....              ..+.+.+++..++.|++.+...|+..+++.|..|+++      .....++
T Consensus        84 ~~~~~~~~L~~l~~~~--------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al  143 (524)
T PF05977_consen   84 LRALVALLLAVLAFFG--------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANAL  143 (524)
T ss_pred             HHHHHHHHHHHHHHhC--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHH
Confidence            8776655555433211              2245677888899999999999999999999998654      5667777


Q ss_pred             HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      .....|+...+||.++|.+....|-.+.|.+.++..++....+..
T Consensus       144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~  188 (524)
T PF05977_consen  144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR  188 (524)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999888778888898888776665544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.20  E-value=3.6e-10  Score=102.26  Aligned_cols=153  Identities=13%  Similarity=0.023  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhH-HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANG-ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      .++......++....+++.. ...+.|.++.+|.+..+.+.......++..++.++.+++.|| +|||+.+..+..+..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence            34444555555566655555 667777777799999999998888899999999999999999 7999988877666555


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +........                 . +...+++..++.|++.+...+...+++.|.+|+++      |++..+.++..
T Consensus       290 ~~~~~~~~~-----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  345 (365)
T TIGR00900       290 AILVVGLTP-----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSL  345 (365)
T ss_pred             HHHHHHhhc-----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHH
Confidence            544433321                 1 24556777888999999888888999999988543      78999999999


Q ss_pred             HHHHHHHHHhhhhhhcccc
Q 022513          175 TTLAAMIGVTAIVYVFIDQ  193 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~  193 (296)
                      .++|..+++.+.+++.++.
T Consensus       346 ~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       346 SHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999887754

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.20  E-value=1.5e-09  Score=102.52  Aligned_cols=175  Identities=10%  Similarity=-0.024  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHH--------H
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC--------L   86 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i--------~   86 (296)
                      +.++......++....++....++|.|+++.+|++..+++....+..++..++.+++|+++|| +++|+..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence            456677777788888888889999999999999999999998888889999999999999999 5654321        1


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (296)
Q Consensus        87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~  166 (296)
                      .+......+...+....  .              ..+....++...+.+.+.++..+.......|..|.       .++.
T Consensus       340 ~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~  396 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPY--L--------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-------FLGF  396 (465)
T ss_pred             HHHHHHHHHHHHHHHHH--c--------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------HHHH
Confidence            11111111111111111  0              01122233334444444444444443334454442       2688


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccc---cchhHHHHHHHHHHHHHHHHH
Q 022513          167 YFNFYLFATTLAAMIGVTAIVYVFID---QGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       167 ~~~~~~~~~~~G~~i~~~~~~~l~~~---~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      ..+..+...++|+.++|.+.+++.+.   .+|..+|.+.++..+++.+..
T Consensus       397 ~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       397 IKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            88888889999999999999988764   347888888877776665544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.19  E-value=3e-10  Score=103.20  Aligned_cols=161  Identities=16%  Similarity=0.101  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH--HHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT--LEV   93 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~--~~~   93 (296)
                      .++.+....++.....+++..+++.|+++.+|++..+++.......++..++.+++|+++||..+||+.......  ...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            344555555666666677888999999999999999999999999999999999999999983233333222111  111


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.......   +              ..+.....+..++.|+..++..+....+..|.+|++.      |++..++++.
T Consensus       297 ~~~~~~~~~---~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~  353 (379)
T TIGR00881       297 VSLLVYWLN---P--------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGF  353 (379)
T ss_pred             HHHHHHhcC---c--------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHH
Confidence            111111110   0              1122334444555665555555556677889988655      7889999999


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGF  199 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f  199 (296)
                      ..++|+.++|.+.+++.++.||+..|
T Consensus       354 ~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       354 FAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999998887653

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.19  E-value=1.3e-09  Score=100.60  Aligned_cols=174  Identities=14%  Similarity=0.053  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      ++..+...++...+......+.+.|+++ .|+++++.+........ ...++.+++|++.|| +|+|+.+..+.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence            4444445556666566666777888875 79999999988777654 556778999999999 79999988877665333


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCC-CChhhhhhhhhhHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE-NDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~-~~~~~~~~r~~~~~~~~~~  174 (296)
                      .+......... .            .......+....+.+++.|...+...+...+..++ +.      +++.++.++..
T Consensus       288 ~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  348 (390)
T TIGR02718       288 ALLWFAQAAFW-L------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQST  348 (390)
T ss_pred             HHHHHHHHHcc-c------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHH
Confidence            32222111100 0            01112233333444555666666666666666554 22      67888888888


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      .++|..++|.+++++.+..|++..|.+.+++.+++.+
T Consensus       349 ~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       349 RDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            8999999999999999988998888887766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.19  E-value=8.1e-10  Score=105.64  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHH------------HHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           24 SALENMGFIANGISMVLYFKNEMHFDIAGASN------------TLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~------------~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      .++..+.+|++..++|.+++ +.|++...++.            ...+..++..++.+++++++|| +|||++++++.++
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~  374 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFI  374 (502)
T ss_pred             HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHH
Confidence            34455677888888888875 56776542211            1223334556678899999999 7999999888777


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..++.+++.......              + ....+....+...++..+..+....+.+|.+|++.      |++..++.
T Consensus       375 ~~~~~~~l~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~~  433 (502)
T TIGR00887       375 LTVLFFVLGFAYNHL--------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGIS  433 (502)
T ss_pred             HHHHHHHHHHHHHhc--------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHHH
Confidence            666655544332100              0 00111111111222222234556677899999765      88999998


Q ss_pred             HHHHHHHHHHHHhhhhhhccc----------cchhHHHHHHHHHHHHHHH
Q 022513          172 LFATTLAAMIGVTAIVYVFID----------QGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~~----------~gw~~~f~i~~~~~~~~~i  211 (296)
                      +....+|++++|.+.+++.+.          .++...|.+.++..+++.+
T Consensus       434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       434 AASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             HHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            989999999999999888763          2344566666555554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.18  E-value=1.4e-09  Score=100.25  Aligned_cols=165  Identities=16%  Similarity=0.037  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~   97 (296)
                      +......++...+.+....++++|+++.+|+++.+.+.......++..++.++.|+++|| +|||+.+..+..+..++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~  280 (382)
T PRK10091        202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALL  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHH
Confidence            333333444444555556677888888899999999999999999999999999999999 7999999888877777665


Q ss_pred             HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhc-ccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGA-GQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~-e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      ++.....                  +.....+..++.++|.++..+....... +..+.+.      ++..  ..+...+
T Consensus       281 ~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~  334 (382)
T PRK10091        281 MLFFFGG------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAFN  334 (382)
T ss_pred             HHHHHHh------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHHH
Confidence            4432210                  1123334444555554444333333233 3322211      2322  2345678


Q ss_pred             HHHHHHHhhhhhhccc-cchhHHHHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFID-QGWWLGFLISSVATLIG  209 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~-~gw~~~f~i~~~~~~~~  209 (296)
                      +|..+||.+++++.+. .+|+..+.+.++..++.
T Consensus       335 ~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~  368 (382)
T PRK10091        335 LGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAA  368 (382)
T ss_pred             HHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHH
Confidence            9999999999998875 68988888776655444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.18  E-value=3.6e-10  Score=101.34  Aligned_cols=116  Identities=17%  Similarity=0.051  Sum_probs=97.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHH
Q 022513           49 DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY  128 (296)
Q Consensus        49 s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (296)
                      +..-+|.+-+.|++..++.++..|.++|| .|||+++++|++..++...+...+.                   +...+.
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~-------------------~F~afv  125 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR-------------------NFAAFV  125 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHH
Confidence            44567888889999999999999999999 5999999999988888766666553                   345677


Q ss_pred             HHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513          129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (296)
Q Consensus       129 ~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  191 (296)
                      ++|++.|+..|-. +.+-++++|.+++++      |+..++....+..+|..+||++++++..
T Consensus       126 ~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  126 LARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            7799999998855 667899999999765      6777888888999999999999999876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.18  E-value=3e-09  Score=97.32  Aligned_cols=161  Identities=12%  Similarity=0.024  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~   97 (296)
                      +.......+....++....+.+.|+++++|.++.+.+.+.....++..++.+++|++.|| +|||+.+..+..+..++.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~  287 (385)
T TIGR00710       209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAV  287 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence            333334444455566677778888888999999999998888888999999999999999 7999999888777777766


Q ss_pred             HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (296)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (296)
                      ++.......              ......++....+.|+|.+...+.......|.+|+ .      +++..+.++.....
T Consensus       288 ~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~~  346 (385)
T TIGR00710       288 LLEITAILG--------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTASALFGTLRLV  346 (385)
T ss_pred             HHHHHHHhc--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHHHHHHHHHHH
Confidence            555432110              01233445556678888888888888888887763 2      56666766655544


Q ss_pred             -HHHHHHhhhhhhccccchhHHHHH
Q 022513          178 -AAMIGVTAIVYVFIDQGWWLGFLI  201 (296)
Q Consensus       178 -G~~i~~~~~~~l~~~~gw~~~f~i  201 (296)
                       |...++. .+.+.+..+|...+..
T Consensus       347 ~g~i~~~~-~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       347 LGAIVGYL-VSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHH-HHhccccChHHHHHHH
Confidence             4444444 4455554455444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.16  E-value=3.1e-09  Score=100.57  Aligned_cols=151  Identities=8%  Similarity=-0.051  Sum_probs=101.7

Q ss_pred             HhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCC
Q 022513           41 YFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK  120 (296)
Q Consensus        41 yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  120 (296)
                      ++.++.|++............+...++.+++|+++|| +|||+.++.+.++..++.+++......+              
T Consensus       296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~--------------  360 (479)
T PRK10077        296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ--------------  360 (479)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC--------------
Confidence            3445688887766666666777888999999999999 7999999999998888877665432100              


Q ss_pred             cchHHHHHHHHHHHHHcCcC-cccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhh------hhcccc
Q 022513          121 GAIAAYFYGSLYLYSLGCGG-NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIV------YVFIDQ  193 (296)
Q Consensus       121 ~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~------~l~~~~  193 (296)
                      ... .....+..+.+.+.+. ..+....+++|.+|++.      |++..++.+...++|..+++.+.+      ++.++.
T Consensus       361 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~  433 (479)
T PRK10077        361 APG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF  433 (479)
T ss_pred             ccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence            011 1222333344444433 34667899999998654      788888877777777777654443      445677


Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 022513          194 GWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       194 gw~~~f~i~~~~~~~~~i~~  213 (296)
                      +|+..|++.++..+++.+..
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~  453 (479)
T PRK10077        434 HNGFSYWIYGCMGVLAALFM  453 (479)
T ss_pred             cCccHHHHHHHHHHHHHHHH
Confidence            88888877666555554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.16  E-value=2.3e-09  Score=98.80  Aligned_cols=166  Identities=9%  Similarity=-0.028  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |..+..+...++......+...+++.|++ +.|.+..+.+...++..++..+..++.|++.|| +|+|+.+..+.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence            33454455555555665566778888885 589998888888888778888888999999999 7999999888887777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH-H
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-F  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~-~  173 (296)
                      +.+......                   +...+++..++.|++.+...+....+..++ ++++      +++..+.+. .
T Consensus       283 ~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~  336 (382)
T PRK11128        283 RWGLMGSTT-------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSAL  336 (382)
T ss_pred             HHHHHHhhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHH
Confidence            655443321                   345667778888888887777777776665 3221      456666654 4


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      ...+|..++|.++|++.+..|+ ..+...+++.+++
T Consensus       337 ~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        337 AMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            5567878999999999998876 3555555444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.16  E-value=1.1e-09  Score=101.21  Aligned_cols=169  Identities=12%  Similarity=0.014  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEM---HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      .+..+...++....+.......+.|+++.+   +.+....+...++..+...++.+..|++.|| +|||+.+.++.++..
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~  295 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHH
Confidence            333333444444444445556778887665   4455566777777777888888999999999 799999988888777


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH-HH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YL  172 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~-~~  172 (296)
                      ++..+.....                   +...++...++.|++.+........+..+.++++.      +++..+. ++
T Consensus       296 l~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~  350 (396)
T TIGR00882       296 VRIIGSSFAT-------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQ  350 (396)
T ss_pred             HHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHH
Confidence            7665544321                   23445666777777765444444455566665443      4555544 55


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      ....+|+.+++.+.+++.+..||+.+|.+.+++.++..+
T Consensus       351 ~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       351 FAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            788999999999999999988999999987776655544

>TIGR00895 2A0115 benzoate transport

Probab=99.15  E-value=8.2e-10  Score=101.11  Aligned_cols=146  Identities=16%  Similarity=0.090  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      .+......++....+++...+++ ++.+++|.+..+.+.......++..++.+++|+++|| +|||+.+....+..+.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  329 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAV  329 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHH
Confidence            33344445556666667777777 6677889999999998889999999999999999999 799855444333333322


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      ++ ....                  .+....++..++.|++.+...+...++++|.+|++.      |++.+++++....
T Consensus       330 ~~-~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  384 (398)
T TIGR00895       330 LV-GSTL------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGR  384 (398)
T ss_pred             HH-HHHh------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHH
Confidence            22 2111                  123445666778888888888889999999998554      7888899888899


Q ss_pred             HHHHHHHhhhhhh
Q 022513          177 LAAMIGVTAIVYV  189 (296)
Q Consensus       177 ~G~~i~~~~~~~l  189 (296)
                      +|..++|.+.+++
T Consensus       385 ~g~~~g~~~~G~l  397 (398)
T TIGR00895       385 LGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHhHHhc
Confidence            9999999988865

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.15  E-value=7.4e-10  Score=104.83  Aligned_cols=154  Identities=13%  Similarity=0.111  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      .+......++....+++...+++.|+++.+|+++.+++.......++..++.+++|++.|| +|||+.+.++..+..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHH
Confidence            4444555666677778888899999999999999999999888889999999999999999 799999988888877776


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      .++..... +              ..+...+....++.|+|.|...+.......+.+|+++      +++..+.++...+
T Consensus       336 ~~~~~~~~-~--------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~  394 (485)
T TIGR00711       336 YWRAFTFT-P--------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQ  394 (485)
T ss_pred             HHHhccCC-C--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHH
Confidence            65542110 1              1223445566778888888777666666667777443      7888888888899


Q ss_pred             HHHHHHHhhhhhhccc
Q 022513          177 LAAMIGVTAIVYVFID  192 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~  192 (296)
                      +|+.+|+.+.+.+.++
T Consensus       395 ~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       395 LGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888877554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.14  E-value=1.9e-09  Score=101.45  Aligned_cols=163  Identities=15%  Similarity=0.074  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513           20 VFVLSALENMGFIANGISMVLYF-KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM   98 (296)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~   98 (296)
                      .....++.....++...+.+.|+ ++.+|+++.+++.....+.++..++.+++|++.|| +|||+++..+.++..++..+
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~  341 (438)
T PRK10133        263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLI  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH
Confidence            33444555566666677888886 56789999999999999999999999999999999 79999998887776655444


Q ss_pred             HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (296)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G  178 (296)
                      .....                  ..  ..+.+..+.|+|.+...|+..+...|.++++. +    .++  +... ...+|
T Consensus       342 ~~~~~------------------~~--~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-~----~as--~l~~-~~~~g  393 (438)
T PRK10133        342 SAFAG------------------GH--VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-K----YGS--SFIV-MTIIG  393 (438)
T ss_pred             HHHcC------------------Ch--HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-c----cch--hHHh-HHhcc
Confidence            33221                  11  12445678899999999999999999887532 1    222  2222 23357


Q ss_pred             HHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHH
Q 022513          179 AMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLI  211 (296)
Q Consensus       179 ~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i  211 (296)
                      +.++|.+.+++.+..| -+.+|.++.++.+....
T Consensus       394 ~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             chHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            7788888888888877 67888877666554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.14  E-value=1e-09  Score=104.83  Aligned_cols=152  Identities=11%  Similarity=0.011  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      ........++....+++...+++.|+++.+|+++.+++.......++..++.+++|++.|| +|||+.+..+.++..++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSF  339 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence            3344455556666777788889999999999999999999999999999999999999999 799999888888877776


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +++.....                ..+........++.|+|.|...+.......+..|+++      ++...+.++...+
T Consensus       340 ~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~  397 (495)
T PRK14995        340 YGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYE  397 (495)
T ss_pred             HHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHH
Confidence            65543211                1122345566788899999888777777778777544      6777788888899


Q ss_pred             HHHHHHHhhhhhhcc
Q 022513          177 LAAMIGVTAIVYVFI  191 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~  191 (296)
                      +|+.+|+.+.+.+.+
T Consensus       398 lG~~~G~ai~g~i~~  412 (495)
T PRK14995        398 LGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888777643

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.14  E-value=2.4e-09  Score=95.71  Aligned_cols=163  Identities=10%  Similarity=0.049  Sum_probs=135.7

Q ss_pred             HHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 022513           28 NMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKS  107 (296)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~  107 (296)
                      |-..-++ ..+..-+++++|+|.+.++.++++-.++..+..+++.+++.| +|-.+.+..+.++..+|.++-...     
T Consensus        25 R~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~-----   97 (395)
T COG2807          25 RPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG-----   97 (395)
T ss_pred             chhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-----
Confidence            3444333 344455788999999999999999999999999999999999 899999999999999998765432     


Q ss_pred             CCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 022513          108 LHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIV  187 (296)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~  187 (296)
                                     ....++.+-.+.|.|++......|.++-+-||.+       .+...+.|..+.++|+.+++.+..
T Consensus        98 ---------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lav  155 (395)
T COG2807          98 ---------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAV  155 (395)
T ss_pred             ---------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhh
Confidence                           2457888999999999999999999999999965       467778888999999999998888


Q ss_pred             hhcccc-chhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          188 YVFIDQ-GWWLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       188 ~l~~~~-gw~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                      .+.++. ||+.+..+.+...+++++.+++...|
T Consensus       156 pla~~~~gW~~aL~~WAl~allAl~~WlPq~~r  188 (395)
T COG2807         156 PLAQHSGGWRGALGFWALLALLALLIWLPQALR  188 (395)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            887765 79999988888888888877776433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.13  E-value=4.1e-09  Score=100.94  Aligned_cols=171  Identities=18%  Similarity=0.071  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      +..++...++.++....+...+|.+.++.+|.++..-|++.+++.++..+|.++.+++.+| +++++.+..+.+++.++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHH
Confidence            4444444444455444555667888899999999999999999999999999999999999 799998888887777766


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +.+.++.                   +.+...+..++.|++.....+...+..-+..|++.      ||+.++.++....
T Consensus       299 ~~lal~~-------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~  353 (524)
T PF05977_consen  299 LLLALSP-------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFF  353 (524)
T ss_pred             HHHhcch-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHH
Confidence            6555432                   34556667778888877777777777777777654      8999999998888


Q ss_pred             HHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~  213 (296)
                      .+..+|.++.|.+.+..|-+.++.+.++.++++.++.
T Consensus       354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999898888887776665554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.12  E-value=4.7e-09  Score=98.66  Aligned_cols=184  Identities=12%  Similarity=0.005  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      ..|.+.+..++.-.++.+...++|.|+++.+.  .........+..+...+..+++|+++|| +|++|++.++.+..+++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence            46777777777777777787899999988663  2333333444567788899999999999 79999999988877776


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCC------C---------Chhh
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE------N---------DPKG  160 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~------~---------~~~~  160 (296)
                      ........  |..           ...+...+.+..+.+.++.|.....+..++.+.||+      +         ....
T Consensus       330 ~~~~~l~l--p~~-----------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~  396 (462)
T PRK15034        330 SALLFLTL--PGT-----------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA  396 (462)
T ss_pred             HHHHHHHh--ccc-----------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence            54433321  210           012345555555554455555556666666666663      0         0011


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 022513          161 AKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       161 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      |+..+...++......+|+++-|.+.++..+.. ++..+|+...+..+++.++.+.
T Consensus       397 ~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        397 VTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            123466667777778888888887766665543 4777888777777666655444

>TIGR00896 CynX cyanate transporter

Probab=99.11  E-value=2.1e-09  Score=97.82  Aligned_cols=153  Identities=14%  Similarity=0.003  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-chhHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFATCLVFGTLEV   93 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GRr~~i~~~~~~~~   93 (296)
                      +..+......++....+++...+++.|+++ .|.+..+.+...+...++..++.++.|+++|| + +||+++.++.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence            334444445555667777888899999875 79999999999999999999999999999999 7 56667777777777


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.+.+.....                  +.. . ....+.|++.|...+...+...+..++++     +++..++..+.
T Consensus       275 ~~~~~~~~~~~------------------~~~-~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~  329 (355)
T TIGR00896       275 VGLCGLLFAPM------------------HGL-W-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQS  329 (355)
T ss_pred             HHHHHHHHhhh------------------hHH-H-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHH
Confidence            77655543320                  111 1 13457788888887776666665544321     25666777777


Q ss_pred             HHHHHHHHHHhhhhhhccccc
Q 022513          174 ATTLAAMIGVTAIVYVFIDQG  194 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~g  194 (296)
                      ..++|..++|.+.+++.++.|
T Consensus       330 ~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       330 IGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            778888999999999987764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.11  E-value=2.5e-09  Score=101.52  Aligned_cols=174  Identities=14%  Similarity=0.060  Sum_probs=124.7

Q ss_pred             CchhHHHHHH-HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCc-----hhHHHH
Q 022513           13 GFRACTFVFV-LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS-----RFATCL   86 (296)
Q Consensus        13 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G-----Rr~~i~   86 (296)
                      +++..+.++. ..+.+.+. +.+...++.++++++|+|+++.+...+...+...+-++ +|+++|| ++     ||+.+.
T Consensus        23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~   99 (468)
T TIGR00788        23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLV   99 (468)
T ss_pred             CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHH
Confidence            4444443333 56777777 67777888889999999999998888888887777665 9999999 67     777777


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (296)
Q Consensus        87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~  166 (296)
                      ++.++.. ......++.  .              ........+.+++.+++.+......-++..|..+ ++++   .++.
T Consensus       100 ~~~~l~~-~~~~~~l~~--~--------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~  158 (468)
T TIGR00788       100 LSGLLGS-AILYGLLPG--K--------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPS  158 (468)
T ss_pred             HHHHHHH-HHHHHhccc--c--------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCC
Confidence            7765542 111111111  0              1122333346788899988888999999999998 3322   2455


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513          167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~  210 (296)
                      ..++.|.+.++|..+++.+++++.+..+|+..|++.+++.++..
T Consensus       159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~  202 (468)
T TIGR00788       159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL  202 (468)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            66677777889999999999999988899999998877766553

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.10  E-value=1.1e-09  Score=103.07  Aligned_cols=158  Identities=12%  Similarity=0.051  Sum_probs=111.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |.++...+..++...+++......+.|+++.+|.++...+.......++..++.++.++++|| +|+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            334445555666666666666666777888888876655544444455677889999999999 7999999999988888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhh-hhhhhhhHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKG-AKALASYFNFYLF  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~-~~~r~~~~~~~~~  173 (296)
                      +.+.+....                 ..+.+.+++..++.++|.+...+...++.+|..|.++.++ +++.+..++.+.+
T Consensus       307 ~~~~~~~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        307 GYLLFFWVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             HHHHHHHcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence            876655321                 1234456667778899999888888899999887543211 1224777788888


Q ss_pred             HHHHHHHHHHhhhhhhc
Q 022513          174 ATTLAAMIGVTAIVYVF  190 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~  190 (296)
                      ...+|..+++.+.+.+.
T Consensus       370 ~~klg~aig~~i~g~~l  386 (448)
T PRK09848        370 TRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88899999888776653

>TIGR00889 2A0110 nucleoside transporter

Probab=99.08  E-value=8.1e-09  Score=96.57  Aligned_cols=163  Identities=13%  Similarity=0.070  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCch-hHHHHHHHHHHHHHHH
Q 022513           19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR-FATCLVFGTLEVLSLV   97 (296)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR-r~~i~~~~~~~~ig~~   97 (296)
                      .+....++...++-...++++.|+++++|++..+.+++.+.+.++..++++++|.++|| +|| |+++.++.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH
Confidence            34455566666655556899999999999999999999999999999999999999999 665 7777777766655554


Q ss_pred             HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCC--ChhhhhhhhhhHHHHHHHH
Q 022513           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEN--DPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~--~~~~~~~r~~~~~~~~~~~  175 (296)
                      +.....                   +...+++.+.+.+++.+...+...+...+.....  +......|.+.+      .
T Consensus        85 ~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~------G  139 (418)
T TIGR00889        85 FAAQVT-------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVM------G  139 (418)
T ss_pred             HHHHhc-------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeee------h
Confidence            444321                   2455667777777766555444433321111100  000000123333      2


Q ss_pred             HHHHHHHHhhhhhhccccchhHHHHHHHHHHHH
Q 022513          176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI  208 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~  208 (296)
                      .+|..+++.+++.+.....|. +|++.+++.++
T Consensus       140 ~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~  171 (418)
T TIGR00889       140 TIGFIAAMWAVSLLDIELSNI-QLYITAGSSAL  171 (418)
T ss_pred             hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHH
Confidence            467778888777774333343 45555444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.08  E-value=1.4e-08  Score=94.15  Aligned_cols=166  Identities=13%  Similarity=0.060  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      ++..+...++...+.++...+.++++.+++|++..+.+.......++..++.++.+++.|| .+|+ .+..+..+..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~-~l~~~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKL-ALAGAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-HHHHHHHHHHHHH
Confidence            4444444445455555666666555556789999888988888888999999999999999 5544 4333333333332


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      ..+....                  .+...+.+..++.|++.+...+..++++.+..|++       .++..+.++...+
T Consensus       296 ~~l~~~~------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  350 (394)
T PRK10213        296 LVLTLWG------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQ  350 (394)
T ss_pred             HHHHHHh------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHH
Confidence            2222211                  12345566777888888888888888888877643       2233344455678


Q ss_pred             HHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      +|..+|+.+++++.+..|++..+...+.+.++.
T Consensus       351 lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        351 LANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            899999999999999888888887766554433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.07  E-value=4.3e-09  Score=109.92  Aligned_cols=162  Identities=13%  Similarity=-0.011  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChh-hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA-GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~-~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      ++..++..++.....+....+++.|+.+.+|++.. ..+++.....++..++.+++|+++|| +++++++.++.++..++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHH
Confidence            33333344444444556677889999999999998 88888888889999999999999999 79999888877777666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      .+++....                   +...+++..++.|++.++..+...+++.+..|++.      |++.++.+++..
T Consensus       313 ~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~  367 (1146)
T PRK08633        313 LFLLPTAP-------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQ  367 (1146)
T ss_pred             HHHHHHhh-------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHH
Confidence            55544332                   23456667788889988888888899999988765      788888888888


Q ss_pred             HHHHHHHHhhhhhhcc-ccchhHHHHHHHH
Q 022513          176 TLAAMIGVTAIVYVFI-DQGWWLGFLISSV  204 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~-~~gw~~~f~i~~~  204 (296)
                      ++|..+++.+++.+.. ..++...+.+.+.
T Consensus       368 ~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        368 NVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            8888777766655433 2344445544433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.06  E-value=2e-09  Score=101.94  Aligned_cols=147  Identities=17%  Similarity=0.135  Sum_probs=113.5

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcc
Q 022513           43 KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGA  122 (296)
Q Consensus        43 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (296)
                      .+++++...+-+.+.+++.++..++.++++.+.|| +.-.+.+....+...+-.++....                   .
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~-------------------~  132 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV-------------------H  132 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH-------------------h
Confidence            35778888889999999999999999999999999 785555554444433222221111                   2


Q ss_pred             hHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc------cccchh
Q 022513          123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF------IDQGWW  196 (296)
Q Consensus       123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~------~~~gw~  196 (296)
                      +.+.+++.|++.|+..++.+|+...+++-.|.+++      |+..+++++.+..+|+.+|.+++..+.      ...|||
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~  206 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR  206 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence            46789999999999999999999999999998665      788888999888999998888876652      346899


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 022513          197 LGFLISSVATLIGLIALAI  215 (296)
Q Consensus       197 ~~f~i~~~~~~~~~i~~~~  215 (296)
                      +.|.+.+++.++..++.++
T Consensus       207 ~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  207 WLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             eehhHHHHHHHHHHheEEE
Confidence            9999999877665544333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.06  E-value=4.4e-09  Score=99.90  Aligned_cols=161  Identities=13%  Similarity=0.003  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |.++.+++..++.....+......+.|.+..++ +....+.+.....++..++.++.++++|| +|||+++.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence            556666666777776666555555544444444 44455556666667788889999999999 7999999988887776


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChh-hhhhhhhhHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~-~~~~r~~~~~~~~~  173 (296)
                      +.+........+              ..+...+++..++.+++.+...+...++++|..|.++-+ .+++.|..++...+
T Consensus       309 ~~~~~~~~~~~~--------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~  374 (473)
T PRK10429        309 SCGVLLLMGLAA--------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM  374 (473)
T ss_pred             HHHHHHHHhccC--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence            665544321111              123345566667788888888888899999997743211 12224567777778


Q ss_pred             HHHHHHHHHHhhhhhhcc
Q 022513          174 ATTLAAMIGVTAIVYVFI  191 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~  191 (296)
                      ...+|..+++.+.+++.+
T Consensus       375 ~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        375 VVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888777644

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.04  E-value=5.7e-09  Score=93.41  Aligned_cols=176  Identities=12%  Similarity=0.032  Sum_probs=120.4

Q ss_pred             hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513           34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (296)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~  113 (296)
                      ....+.+-+....|.+..++..+......+..+++...|.++|+ +||||...+...+..+..++-..            
T Consensus        96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~------------  162 (528)
T KOG0253|consen   96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGA------------  162 (528)
T ss_pred             HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcC------------
Confidence            33344444566778888899998888889999999999999999 79999887766655443332221            


Q ss_pred             CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ  193 (296)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  193 (296)
                             +.+...+.+.|.+.++|.|+ .|...++-.|..|..+      |....-.. ....+|..+...+.-.+..+.
T Consensus       163 -------spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  163 -------SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             -------CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence                   22456788899999999999 7888888889888655      33333222 445667777665555555677


Q ss_pred             chhHHHHHHHHH-HHHH-HHHHHhcCCceeecCCCCChhhhhhhhh
Q 022513          194 GWWLGFLISSVA-TLIG-LIALAIGKPFYRIQQPGESPLVRVAQVP  237 (296)
Q Consensus       194 gw~~~f~i~~~~-~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~vl  237 (296)
                      |||+-....... ++.+ ...+..++|||..-++++....+.++.+
T Consensus       228 gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~ki  273 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKI  273 (528)
T ss_pred             hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHH
Confidence            999766554432 2222 3345678999988776655555555555

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.03  E-value=5.7e-09  Score=95.10  Aligned_cols=173  Identities=13%  Similarity=0.120  Sum_probs=134.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +.+..-+...++-+=+..++......|..+++|++..+...+....++.+.++++++|++.|| +|-|+++.++.+++.+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHH
Confidence            345555556666555666788888899999999999999998888999999999999999999 8999999999888877


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      ..+...+..                  .. ..+.+.-.+.|+..|+.++..-++.++..|+++      -+.+|++|.+.
T Consensus       331 ~~~~~~~~~------------------~~-~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyalt  385 (438)
T COG2270         331 AALYLIFLE------------------GE-LDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALT  385 (438)
T ss_pred             HHHHHHHcc------------------cc-HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhh
Confidence            655444321                  11 234445567889999999999999999999765      57899999999


Q ss_pred             HHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~  213 (296)
                      ...++.+||...+.+.+..| -|.++....++..++++++
T Consensus       386 gra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         386 GRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            99999999999887766543 5666666556555555543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.03  E-value=7.4e-09  Score=98.34  Aligned_cols=168  Identities=9%  Similarity=0.009  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhh----hcCchhH-HHHHHHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD----TYLSRFA-TCLVFGTLEVLSLV   97 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD----r~~GRr~-~i~~~~~~~~ig~~   97 (296)
                      ..+..++.+..+..+++.|+++.+|+++..++.+..+..+...+..|+.|+++|    | +|||| -++++.+...++.+
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHH
Confidence            455566766777788999999999999999999999999999999999999999    5 59955 55566666666654


Q ss_pred             HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (296)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (296)
                      ++...   |...          .......+++..++..++......+..++.+|+.++.+  |   |.+..++-....++
T Consensus        93 llf~~---p~~~----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~--e---R~~l~~~~~~~~~i  154 (473)
T PRK10429         93 LLFSA---HLFE----------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR--E---REQLVPYPRFFASL  154 (473)
T ss_pred             HHHcC---CCCC----------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH--H---HHHHHHHHHHHHHH
Confidence            44321   2110          01123344444555667777777888888899876432  3   55666665555666


Q ss_pred             HHHHHHhhhhhh----c---cccchhHHHHHHHHHHHHH
Q 022513          178 AAMIGVTAIVYV----F---IDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       178 G~~i~~~~~~~l----~---~~~gw~~~f~i~~~~~~~~  209 (296)
                      |+.+.+.+...+    .   +..+|+....+.+++.++.
T Consensus       155 g~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~  193 (473)
T PRK10429        155 AGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS  193 (473)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            655544333221    1   1235665555555544433

>PRK10054 putative transporter; Provisional

Probab=99.03  E-value=6.8e-09  Score=96.28  Aligned_cols=171  Identities=15%  Similarity=-0.029  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhh--hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKN--EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      ..+......++..+.+.....+.+.|+..  +.+.+....+.+.....+......+..|++.|| .|||+.+..+.++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHH
Confidence            34444444555555544444556666643  344555555666666666666667888999999 699999988888777


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.+.+....                  .+...+.+...+.++|.+...|...+++.+..|++.      +++.++... 
T Consensus       286 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~-  340 (395)
T PRK10054        286 IGLVGFIFSG------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS-  340 (395)
T ss_pred             HHHHHHHHcc------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-
Confidence            7766554321                  123445566778888888777888888888888654      566666543 


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ...+|..+||.+++++.++.|....|.+.++...++.++
T Consensus       341 ~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        341 LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence            566899999999999999988888887765555444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.6e-09  Score=101.92  Aligned_cols=174  Identities=15%  Similarity=0.071  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHhHH---hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANGI---SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |.+++..|+.+...+|+..   .+...+.++++.+..+.+++.++......+..|+.+.+.|| +|.|.+++.|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence            4555566666666665543   33455678899999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHH-HHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS-LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      |.++..++..                   .+.+++. =++.|+|.|....+....++..|+.+       |+...+....
T Consensus       124 g~~lssF~~~-------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~  177 (509)
T KOG2504|consen  124 GLLLSSFATS-------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVS  177 (509)
T ss_pred             HHHHHHHHhh-------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhc
Confidence            9988777652                   3344444 46789999998888888888777632       5666665445


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  218 (296)
                      +..+|..+=|.+..++.+..|||..+++.+.+.+-.++.-...+|
T Consensus       178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            566666666667778888899999998877766554444444454

>TIGR00901 2A0125 AmpG-related permease

Probab=99.03  E-value=4.9e-09  Score=95.39  Aligned_cols=144  Identities=15%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF-GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      .+.+++..++...++++...+++.|+++ +|+++.+.+.+..+.. +...++.+++|+++|| +|||+.+..+.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence            5555556666778888888999999987 8999999888777655 5677899999999999 79999988888777666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      ..+...........       + .+..+...+....++.+++.+...+...+++.|.+|++.      |++.++.++...
T Consensus       289 ~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~  354 (356)
T TIGR00901       289 NAGFVWLASNGHHD-------G-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHhcCccc-------c-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHH
Confidence            55443321100000       0 000123456666778899999999999999999999876      788888766544


Q ss_pred             H
Q 022513          176 T  176 (296)
Q Consensus       176 ~  176 (296)
                      +
T Consensus       355 ~  355 (356)
T TIGR00901       355 A  355 (356)
T ss_pred             h
Confidence            3

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=6.3e-09  Score=97.88  Aligned_cols=170  Identities=9%  Similarity=0.047  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHH-HHHHHHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFAT-CLVFGTLEVLSLVM   98 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~-i~~~~~~~~ig~~~   98 (296)
                      ..+..+..+..+..+++.|+++++|+++..++.+..+..+...+..|+.|+++||.   +||||. ++.+.+...+..++
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l   96 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL   96 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence            34555666666778899999999999999999999999999999999999999982   487554 55566666555544


Q ss_pred             HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (296)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G  178 (296)
                      +...   |...          .......+++..++.+.+......+..++.+|+.++.  ++   |.+..++.....++|
T Consensus        97 ~f~~---p~~~----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~--~e---R~~l~~~r~~~~~~G  158 (444)
T PRK09669         97 TFYT---PDFG----------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP--RE---RHSLQSWRFALSFIG  158 (444)
T ss_pred             HHhC---CCCC----------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH--HH---HHHHHHHHHHHHHHH
Confidence            3322   2111          0123444555555556665566677778899987643  23   556666666677777


Q ss_pred             HHHHHhhhh----hhc---cccchhHHHHHHHHHHHHHH
Q 022513          179 AMIGVTAIV----YVF---IDQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       179 ~~i~~~~~~----~l~---~~~gw~~~f~i~~~~~~~~~  210 (296)
                      +.+++.+..    ++.   ...+|+..+.+.+++.++..
T Consensus       159 ~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~  197 (444)
T PRK09669        159 GLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF  197 (444)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            776654432    222   13467777766665544433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.02  E-value=9e-09  Score=96.39  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=122.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |....+++..++..++........+.|.+..+|.+ ...+....+..+...++.++.++++|| +|||+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence            55666777777777777666677777788888877 455666777888889999999999999 7999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhh-hhhhhhhHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKG-AKALASYFNFYLF  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~-~~~r~~~~~~~~~  173 (296)
                      +.+++.+...                 .+.+.+++..++.|++.|...+...++++|..+.++.++ +++.|..++.+.+
T Consensus       303 ~~~~~~~~~~-----------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~  365 (428)
T PF13347_consen  303 GFLLLFFLGP-----------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF  365 (428)
T ss_pred             HHHHHHHHHh-----------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence            8887766531                 245678888899999999999999999999998543221 2235777788888


Q ss_pred             HHHHHHHHHHhhhhhhc
Q 022513          174 ATTLAAMIGVTAIVYVF  190 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~  190 (296)
                      ...+|..+++.+.+.+.
T Consensus       366 ~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  366 FIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            88999998888776653

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.02  E-value=5.5e-09  Score=97.74  Aligned_cols=187  Identities=14%  Similarity=0.062  Sum_probs=130.7

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCch-hHHHH
Q 022513            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR-FATCL   86 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR-r~~i~   86 (296)
                      -++.+||.+++..+..++....+....+.+-+|+++ +.+-+.+..|++++...++..++.+..|+.+.| -|+ |+-++
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli  106 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLI  106 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHH
Confidence            356799999999999999888877666777788875 566777788999999999999999999999999 575 66777


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (296)
Q Consensus        87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~  166 (296)
                      .|+++.++|.++.......+              +.....++++|++.|+|.|.. +..-+|+++....++      |.+
T Consensus       107 ~s~ii~~~g~llY~~l~~~~--------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R~r  165 (488)
T KOG2325|consen  107 VSFLIAIIGNLLYLALAYVP--------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------RPR  165 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------hHH
Confidence            89999999998874433333              225678999999999998854 667788888655443      445


Q ss_pred             hHHHHHHHHHHHHHHHHhh----hhhhccc------c---chhHHHHHHHHHHHHHHHHHHhcC
Q 022513          167 YFNFYLFATTLAAMIGVTA----IVYVFID------Q---GWWLGFLISSVATLIGLIALAIGK  217 (296)
Q Consensus       167 ~~~~~~~~~~~G~~i~~~~----~~~l~~~------~---gw~~~f~i~~~~~~~~~i~~~~~~  217 (296)
                      .++....+..+|..+||.+    ++...+.      .   .+..+-|+.+++.++..+++....
T Consensus       166 A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f  229 (488)
T KOG2325|consen  166 AFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF  229 (488)
T ss_pred             HHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence            5555444445555555544    3333221      1   133555666665555555444433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.01  E-value=2.7e-08  Score=92.35  Aligned_cols=151  Identities=16%  Similarity=0.155  Sum_probs=98.8

Q ss_pred             HhHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAGASNTLTNFF-GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~  114 (296)
                      .+.+.|+.+++|+++.+.+.+..... ++..++.+++|++.|| +|||+.+.++.++..+..+.+......+        
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~--------  300 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP--------  300 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            34455677789999998888776544 4578899999999999 7999988777666555543332221111        


Q ss_pred             CCCcCCcchHHHHHHHH----HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 022513          115 KSSCLKGAIAAYFYGSL----YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (296)
Q Consensus       115 ~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~  190 (296)
                             .+...+.+..    +..+++.+...+....+..+.+|.++      .    +.+....++|..++..+++++.
T Consensus       301 -------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~~G~l~  363 (402)
T PRK11902        301 -------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPTSGYLV  363 (402)
T ss_pred             -------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHHHHHHH
Confidence                   1122333333    34556666667777777777776332      2    3333334566665566789999


Q ss_pred             cccchhHHHHHHHHHHHHHHHH
Q 022513          191 IDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       191 ~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +..||+..|.+.+++.+++.++
T Consensus       364 ~~~G~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        364 EAYGWPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHhChHHHHHHHHHHHHHHHHH
Confidence            9999999998887777665544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.01  E-value=1.9e-08  Score=92.81  Aligned_cols=174  Identities=14%  Similarity=0.066  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHH--HHHHHHHHHHHHhHH-HHHhhhcCchhHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNT--LTNFFGSTFLLCLVG-GFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~--~~~~~~~~~~~~l~~-G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      ...+....+.+.+.+....+.+|.|++ +.|.|.++.+..  .........+.+++. ++.+|| +||||..++.+.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence            344555667777776666678888876 459999999986  344455565555555 668999 799999766553322


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ... ....+...+.             ......+.....+.++..+...+...++..|..++++      ++...+....
T Consensus        81 ~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~  140 (390)
T TIGR02718        81 SAC-LASLALVGPD-------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIA  140 (390)
T ss_pred             HHH-HHHHHcCCcc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHH
Confidence            211 1111111010             0112233333344445555555555555555544322      3444455556


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +..+|..+++.+.+++.++.||+..|++.+++.++..+.
T Consensus       141 g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~  179 (390)
T TIGR02718       141 GVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVC  179 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            668888888888888888899999999888776554444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.01  E-value=7.1e-09  Score=108.42  Aligned_cols=181  Identities=10%  Similarity=-0.124  Sum_probs=123.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +.++..++..++..+.++++..+++.|+++.+|.+....+.+.+.+.++..++.++.|+++|+ .++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence            345555555555666666777899999999999999999999999999999999999999998 5766665555554444


Q ss_pred             HHHHHHHHhhccCCC-CCCC--CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           95 SLVMLTIQAYSKSLH-PPDC--GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        95 g~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      +.+.+..... .... ....  ...-+ ...+.+.++++.++.|++.+...+...+++.+.+|++.      +|+.++.+
T Consensus       304 ~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~  375 (1140)
T PRK06814        304 FGLDLAFASS-SVPAEPAQLKSILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAAN  375 (1140)
T ss_pred             HHHHHHhccc-ccccccccccchhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHH
Confidence            4333322100 0000 0000  00000 00123456677788899999888889999999999776      78888988


Q ss_pred             HHHHHHHHHHHHhhhhhhcc-ccchhHHHHHHHH
Q 022513          172 LFATTLAAMIGVTAIVYVFI-DQGWWLGFLISSV  204 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~-~~gw~~~f~i~~~  204 (296)
                      +...++|..+++++.+.+.+ ..++...+.+.++
T Consensus       376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            88899999999988887763 3455555554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.00  E-value=1.5e-08  Score=94.13  Aligned_cols=153  Identities=13%  Similarity=0.060  Sum_probs=102.0

Q ss_pred             HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (296)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~  112 (296)
                      ....++|.|+++..+ ++.+.+...+...++...+....+++.||+++.++.+..+.++..++.+++....         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            344577888877655 5566777666655555444444455555436767777777777777665554332         


Q ss_pred             CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 022513          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (296)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~  192 (296)
                                +...+.+...+.++|.+...+...++..|..|+++      |++.++.++...++|..+||.+.+++.++
T Consensus       296 ----------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        296 ----------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence                      22344555566777777777888899999998665      78888888889999999999999998775


Q ss_pred             c---c-hhHHHHHHHHHHHHHHH
Q 022513          193 Q---G-WWLGFLISSVATLIGLI  211 (296)
Q Consensus       193 ~---g-w~~~f~i~~~~~~~~~i  211 (296)
                      .   + ....+.+.+++.++..+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        360 GKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             HhhcCCcchHHHHHHHHHHHHHH
Confidence            3   2 23455554444444433

>PRK11462 putative transporter; Provisional

Probab=99.00  E-value=2.4e-08  Score=94.61  Aligned_cols=170  Identities=13%  Similarity=0.055  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh---cCchhHHHH-HHHHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFATCL-VFGTLEVLSLVM   98 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr---~~GRr~~i~-~~~~~~~ig~~~   98 (296)
                      ..+..+..+..+..++..|+++.+|+++..++.+..+.-+.-.+.-|+.|+++||   .+||||..+ ++.+...++.++
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l   96 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL   96 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence            4555566666677789999999999999999999999999999999999999997   369877655 555666666555


Q ss_pred             HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (296)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G  178 (296)
                      +...   |...          .......+++.-++..++......+..++.+|+.++.+  |   |.+..++.....++|
T Consensus        97 lf~~---p~~s----------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~s~r~~~~~iG  158 (460)
T PRK11462         97 AYST---PDLS----------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQSWRFVLATAG  158 (460)
T ss_pred             HHhC---CCCC----------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHHHHHHHHHHHH
Confidence            4322   2111          01223344555556677777777788899999887533  3   677777777777887


Q ss_pred             HHHHHhhhhhhcc-------ccchhHHHHHHHHHHHHHH
Q 022513          179 AMIGVTAIVYVFI-------DQGWWLGFLISSVATLIGL  210 (296)
Q Consensus       179 ~~i~~~~~~~l~~-------~~gw~~~f~i~~~~~~~~~  210 (296)
                      ..+++.+...+..       ..+|+....+.+++.++..
T Consensus       159 ~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        159 GMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            7776655433221       1356655555444443333

>TIGR00898 2A0119 cation transport protein

Probab=98.98  E-value=9.8e-09  Score=97.96  Aligned_cols=127  Identities=12%  Similarity=-0.030  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcC
Q 022513           59 NFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGC  138 (296)
Q Consensus        59 ~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~  138 (296)
                      ...+....+.++++++.|| +|||+++.++.++..++.+++.....                 .......+..++.+++.
T Consensus       363 ~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV-----------------DLYFLRTALAVLGKFGI  424 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC-----------------CchHHHHHHHHHHHHHH
Confidence            3455667788899999999 79999999888877776655443321                 11122333344555566


Q ss_pred             cCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          139 GGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       139 g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      ++..+....+.+|.+|++.      |++..++.+....+|+.++|.+.+ +. ..++..++.+.+++.+++.+
T Consensus       425 ~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence            6666778889999999654      788888888889999999998887 43 34455666665555544433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.95  E-value=7.3e-09  Score=93.28  Aligned_cols=141  Identities=18%  Similarity=0.196  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHhhhhcCCC-hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513           20 VFVLSALENMGFIANGISMVLYFKNEMHFD-IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM   98 (296)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~   98 (296)
                      .+...+.....+++...+++.|+.+.+|.+ ..+.+...++..+...++.++.|+++|| +|+++...+......++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHH
Confidence            344444555566778889999999999999 7888888899899999999999999999 79988887777766666555


Q ss_pred             HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (296)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G  178 (296)
                      +.....                ..+....++..++.|++.+...+....+..|.+|+++      +++..+.++...++|
T Consensus       290 ~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~  347 (352)
T PF07690_consen  290 LLLLPF----------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLG  347 (352)
T ss_dssp             HCCSHH----------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHH
T ss_pred             HHHHHH----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence            443321                1133456667788899999899999999999998654      789999999999999


Q ss_pred             HHHHH
Q 022513          179 AMIGV  183 (296)
Q Consensus       179 ~~i~~  183 (296)
                      +.+||
T Consensus       348 ~~igP  352 (352)
T PF07690_consen  348 GIIGP  352 (352)
T ss_dssp             HHHHH
T ss_pred             HHHCC
Confidence            99886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=98.94  E-value=1.5e-07  Score=87.10  Aligned_cols=145  Identities=6%  Similarity=-0.086  Sum_probs=96.7

Q ss_pred             HHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513           26 LENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS  105 (296)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~  105 (296)
                      +....++....+++.|++ ++|++..+.+.......++..++.++++++.|| +|||+.+....+...++.+.+......
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445556667777775 579999888887777777888899999999999 799997766655555444333322111


Q ss_pred             cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513          106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA  185 (296)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~  185 (296)
                      .              ..+...+.+...+.+++.+...+.......|..|++       +++..++++.....++..++.+
T Consensus       292 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~g~~~~~~~~~~~~~~~~  350 (401)
T PRK11043        292 S--------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQA-------TGKAAALQNTLQLGLCFLASLL  350 (401)
T ss_pred             c--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-------ChHHHHHHHHHHHHHHHHHHHH
Confidence            1              012334445556677888877777777777776632       5777777776667677777777


Q ss_pred             hhhhcccc
Q 022513          186 IVYVFIDQ  193 (296)
Q Consensus       186 ~~~l~~~~  193 (296)
                      .+.+.+..
T Consensus       351 ~g~l~~~~  358 (401)
T PRK11043        351 VSALISTP  358 (401)
T ss_pred             HHHccCCC
Confidence            77776543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.92  E-value=1.5e-07  Score=86.09  Aligned_cols=144  Identities=6%  Similarity=-0.063  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 022513           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT  100 (296)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~  100 (296)
                      ....++...+.+....+.+.++.+.+|+++.+.+.......++..++.+++|+++|| +|||+++..+..+..+..+.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        200 MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555556666778888899999999999999999999999999999999 7999999888776544333332


Q ss_pred             HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHH
Q 022513          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAA  179 (296)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~  179 (296)
                      .....+               .+...+.++..+.+.+.+...+.......|..|+ .      +++..+.+.. ...+|.
T Consensus       279 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~~~g~  336 (377)
T PRK11102        279 VSALLD---------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-M------AGTASSLAGTLRFGIGA  336 (377)
T ss_pred             HHHHHh---------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-c------chHHHHHHHHHHHHHHH
Confidence            221100               1122333344444444444555555666676652 2      4555555433 234566


Q ss_pred             HHHHhhhh
Q 022513          180 MIGVTAIV  187 (296)
Q Consensus       180 ~i~~~~~~  187 (296)
                      .+++.+..
T Consensus       337 ~~g~~~~~  344 (377)
T PRK11102        337 IVGALLSL  344 (377)
T ss_pred             HHHHHHHh
Confidence            66665443

>PRK09848 glucuronide transporter; Provisional

Probab=98.92  E-value=6.9e-08  Score=90.92  Aligned_cols=149  Identities=13%  Similarity=0.060  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHHH-HHHHHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATC-LVFGTLEVLSLVM   98 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~i-~~~~~~~~ig~~~   98 (296)
                      ..+..+..+..+..++..|+++.+|++..+++.+..+..+...+..++.|+++||.   +||||.. .++.+...+..++
T Consensus        16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~   95 (448)
T PRK09848         16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL   95 (448)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence            45566777666777888999999999999999999999999999999999999992   3777755 4555544443333


Q ss_pred             HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-----
Q 022513           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-----  173 (296)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-----  173 (296)
                      +....  ....          ........++...+.+++.+...++..++..|+.++.+  +   |....++..+     
T Consensus        96 ~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~~~~~r~~~~~~~  158 (448)
T PRK09848         96 VFWVP--TDWS----------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RARLGAARGIAASLT  158 (448)
T ss_pred             HHhCc--CCCC----------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHHHHHHHHHHHHHH
Confidence            22111  0000          01122334445566777788888777787777766432  3   3344333332     


Q ss_pred             HHHHHHHHHHhhhhh
Q 022513          174 ATTLAAMIGVTAIVY  188 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~  188 (296)
                      ..+++..++|.+.+.
T Consensus       159 ~~~~~~~~~p~i~~~  173 (448)
T PRK09848        159 FVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            234555566665543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.92  E-value=3.6e-08  Score=85.54  Aligned_cols=154  Identities=16%  Similarity=0.131  Sum_probs=113.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH-HH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG-TL   91 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~-~~   91 (296)
                      ...+.|.+..+.++..++.+=..+.-+.++++.+|+|+..++.+.+...+...+..++.|.++|+ .||+-..+.+. +.
T Consensus       262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACIL  340 (459)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHH
Confidence            45668888888888777777677777899999999999999999999888999999999999999 59987765544 44


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      .+++...+.++..                     .=+++..+.|+.......+..+.++...|+++      .|+.++..
T Consensus       341 tl~~H~~l~Ft~l---------------------sPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~  393 (459)
T KOG4686|consen  341 TLLGHSGLFFTFL---------------------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFI  393 (459)
T ss_pred             HHHHhhhHHhhhc---------------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHH
Confidence            4555555444321                     12345556666554433333344444555444      79999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccccc
Q 022513          172 LFATTLAAMIGVTAIVYVFIDQG  194 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~~~g  194 (296)
                      |-..|+|-.+.|++++.+.++-|
T Consensus       394 qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  394 QSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHhhhhhHHhhhhheeecCCC
Confidence            99999999999999999987643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.91  E-value=1e-08  Score=96.09  Aligned_cols=177  Identities=13%  Similarity=0.047  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhh----hcCchhHHH-HHHHHHHHHHHHHH
Q 022513           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD----TYLSRFATC-LVFGTLEVLSLVML   99 (296)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD----r~~GRr~~i-~~~~~~~~ig~~~~   99 (296)
                      +..+........++..|+++.+|+++...+.+..+..+...+..|+.|.++|    | +||||-. +++.+...++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence            4444454555668889999999999999999999999999999999999999    7 7987754 46777777776665


Q ss_pred             HHHhhcc-CCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513          100 TIQAYSK-SLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (296)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G  178 (296)
                      ....  | ...          .......+.+..++..++......+..++++|..++.+  +   |.+..++-.....+|
T Consensus        90 f~~~--p~~~~----------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~---R~~l~~~~~~~~~~g  152 (428)
T PF13347_consen   90 FSPP--PAGLS----------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E---RTRLSSWRMIFSMIG  152 (428)
T ss_pred             hccc--cchhh----------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h---hhhHHHHHHHHHHHH
Confidence            5321  1 000          01223445666666788888888888999999988543  3   566666666666777


Q ss_pred             HHHHHhhhhhhc----cc---cchhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          179 AMIGVTAIVYVF----ID---QGWWLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       179 ~~i~~~~~~~l~----~~---~gw~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                      ..+...+.+.+.    +.   .+|++...+.+++.++..++.....|+
T Consensus       153 ~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  153 SLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            755444444332    21   268877777766666555554444444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.91  E-value=9.1e-08  Score=88.03  Aligned_cols=164  Identities=9%  Similarity=-0.048  Sum_probs=103.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh---HHHHH-HHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF---ATCLV-FGT   90 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr---~~i~~-~~~   90 (296)
                      |..+.+....++....+|++..++|.|+++ .|++.. ++....+....   +.+..++++|| +.||   +.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~---g~~g~~~~~d~-~~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILA---GLIGVAVIPDR-VARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHH---HHHHHHHhhHH-hhhhhhHHHHHHHHHH
Confidence            446677777888888999999999999965 678764 44444443433   33445788888 5543   33222 232


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~  170 (296)
                      +..+....+....                   +....++...+.+++.....+...++.+|.+|++.      |++..++
T Consensus       266 ~~a~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~  320 (368)
T TIGR00903       266 LIAAFFLALAFEL-------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGA  320 (368)
T ss_pred             HHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccch
Confidence            2222222221111                   11223334445666666666778889999999765      8999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      .+...++|+..+|.+.+.+..  +.+..|.+.++..+++.+
T Consensus       321 ~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~  359 (368)
T TIGR00903       321 IGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFA  359 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence            999999999999988876653  445566555555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.87  E-value=2.4e-08  Score=95.36  Aligned_cols=178  Identities=15%  Similarity=0.164  Sum_probs=133.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +..+.......+..++++....+++.|.+ ..+++..+++..+++..+...++.++.|+++|+ ...++..+....+...
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence            44555555666777787777788888887 889999999999999999999999999999999 4633433333333333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      |...+....                 ..++..+...-.+.|+..|...+..+..+.|..+.++      ....+++....
T Consensus       376 gl~~~~~p~-----------------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~  432 (509)
T KOG2504|consen  376 GLARLFLPF-----------------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLF  432 (509)
T ss_pred             HHHHHHHHH-----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHH
Confidence            333222211                 1235667777788999999888888788889888654      67788888889


Q ss_pred             HHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 022513          175 TTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGK  217 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~  217 (296)
                      ..++..+||.+.+++.+..+ |...|..+++.++++.+.+++..
T Consensus       433 ~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  433 QGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999988776 88999999888887776655544

>PRK09669 putative symporter YagG; Provisional

Probab=98.87  E-value=4.2e-08  Score=92.32  Aligned_cols=158  Identities=11%  Similarity=0.053  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      .+.+++..++...+.. +...+..|..+ .++. ....+.......+...++.+++++++|| +|||+.+..+.++..++
T Consensus       231 ~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        231 WRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVIL  307 (444)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence            3444444444434432 22233344433 3332 3333344445556777888999999999 79999998877665543


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhh-hhhhhhhHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKG-AKALASYFNFYLFA  174 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~-~~~r~~~~~~~~~~  174 (296)
                      .+.....   +              .++...+++..++.|++.+...+...++++|..|.++.+. +++.+..++.+.+.
T Consensus       308 ~~~~~~~---~--------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~  370 (444)
T PRK09669        308 SALIFFI---P--------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA  370 (444)
T ss_pred             HHHHHHh---C--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence            3322221   1              1234556677788999999999999999999987433211 12246677788888


Q ss_pred             HHHHHHHHHhhhhhhccccc
Q 022513          175 TTLAAMIGVTAIVYVFIDQG  194 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~g  194 (296)
                      ..+|..+|+.+++++.+..|
T Consensus       371 ~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        371 IKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            89999999888877654333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.87  E-value=6.6e-08  Score=91.31  Aligned_cols=178  Identities=16%  Similarity=0.182  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh-----HHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF-----ATCLVFG   89 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr-----~~i~~~~   89 (296)
                      +++|.+.+..++++.+++.+..++|.|+.+.+|++..+.++..++-.+...+..+++|.++|| +-+|     .+.-+..
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFN  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHH
Confidence            567788889999999999999999999999999999999999999999999999999999999 4331     1111222


Q ss_pred             HHHHHHHHHHHHH-hhccCCCCCCCCCCCcCCc-chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513           90 TLEVLSLVMLTIQ-AYSKSLHPPDCGKSSCLKG-AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (296)
Q Consensus        90 ~~~~ig~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~  167 (296)
                      .+...+..++... ...+           |.+. .....+.++..+.|+..++...+    ..|..|.       ..+..
T Consensus       337 ~i~~~~~ai~l~~l~~~~-----------~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq-------~a~~l  394 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVLAFTS-----------DEHRLLAVILLTIAIGLSGFNISGFYKN----HQDIAPQ-------HAGFV  394 (466)
T ss_pred             hHHHHHHHHHHHeeeecC-----------CCcchHHHHHHHHHHHHcccchhhhHhh----hhhccch-------HHHHH
Confidence            2222222111111 1111           0111 11222222333333333333222    2222332       25777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccc---cchhHHHHHHHHHHHHHHHHHHh
Q 022513          168 FNFYLFATTLAAMIGVTAIVYVFID---QGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       168 ~~~~~~~~~~G~~i~~~~~~~l~~~---~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      ++..+...++.++++|.+++.+..+   .+|+..|++.+++.+++.+.+..
T Consensus       395 ~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  395 MGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence            8888889999999999999988732   47999999999988877665543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.86  E-value=2.3e-07  Score=86.03  Aligned_cols=153  Identities=9%  Similarity=-0.064  Sum_probs=105.3

Q ss_pred             HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 022513           30 GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH  109 (296)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~  109 (296)
                      ........++.|+++.+|.++.+.+.......++..++.++.+++.|| .++++.+..+..+ .+..+.+...       
T Consensus       220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~-------  290 (393)
T PRK11195        220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ-------  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH-------
Confidence            334445566678888899999999999999999999999999999999 6998888776533 2222222211       


Q ss_pred             CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513          110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  189 (296)
                                  .+.....+..++.|++.+...++..+.+.|..|++.     .+++.++..+...++|..++..+.+.+
T Consensus       291 ------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        291 ------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             ------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence                        123445566677888888877777777777543321     157788888888999999888777755


Q ss_pred             ccccchhHHHHHHHHHHHHH
Q 022513          190 FIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       190 ~~~~gw~~~f~i~~~~~~~~  209 (296)
                       +..|-+..+.+.+...++.
T Consensus       354 -~~~~~~~~~~~~~~~~~~~  372 (393)
T PRK11195        354 -VKLGVPVVAVIVGFGLLVA  372 (393)
T ss_pred             -HHcCCCHHHHHHHHHHHHH
Confidence             4455555555544443333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.82  E-value=3.3e-07  Score=86.32  Aligned_cols=190  Identities=16%  Similarity=0.041  Sum_probs=114.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      .+++.+...+...++..+.-.-...+..+.+-++-|++..++.+.+........+..+++.++-|| +|||+.++++..+
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~  344 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSL  344 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHH
Confidence            456666666666776666432222333344455678999999888888899999999999999999 7999999999998


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHH--HHHHHHHHHHHcCcC-cccchhhhhcccCCCCChhhhhhhhhhH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAA--YFYGSLYLYSLGCGG-NRGTLPALGAGQFDENDPKGAKALASYF  168 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~-~~~~~~~~~~e~~~~~~~~~~~~r~~~~  168 (296)
                      +.+..+++.........            ...+.  ..+++.++..++.+. ..|...-+.+|++|...      |....
T Consensus       345 ~~~~~~~~~~~~~l~~~------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~  406 (485)
T KOG0569|consen  345 MAVALLLMSIALFLSNS------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQ  406 (485)
T ss_pred             HHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHH
Confidence            88877777665432110            00111  123333333333332 23556677889999766      55555


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCcee
Q 022513          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYR  221 (296)
Q Consensus       169 ~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~  221 (296)
                      ++-.....+..++-......+.+..|- ..|.+-++..++..+..+...|+.+
T Consensus       407 s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  407 SVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            554433333333333333444444443 4555545555555555555555544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.82  E-value=4.3e-07  Score=83.76  Aligned_cols=69  Identities=10%  Similarity=0.046  Sum_probs=57.0

Q ss_pred             HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 022513           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ  102 (296)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~  102 (296)
                      ....+.+.|+.+++|++..+.+.......++..++.++.+++.|| +|||+.+.++..+..++.+.+...
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455677888899999888888888888899999999999999 799999999888887777666554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.82  E-value=6.4e-08  Score=86.94  Aligned_cols=149  Identities=14%  Similarity=0.100  Sum_probs=98.9

Q ss_pred             hhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcch
Q 022513           44 NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI  123 (296)
Q Consensus        44 ~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (296)
                      +++|++..+.+.+.....+...+..++.|.++|| +|||+..+..++++.+..+.-.                    ..+
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~--------------------~~~  120 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKH--------------------SSN  120 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHh--------------------ccc
Confidence            5789999999888888788888888999999999 6999999999999988765322                    124


Q ss_pred             HHHHHHHHHHHHHcCcCcccchhhhhcccCCCCC-hhhhhhhhhhHHHHH-HHHHHHHHHHHhhhhhhccccch--hHHH
Q 022513          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND-PKGAKALASYFNFYL-FATTLAAMIGVTAIVYVFIDQGW--WLGF  199 (296)
Q Consensus       124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~-~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~gw--~~~f  199 (296)
                      ...++++|++.|++.....++.-+++......+. +++  ..+..++... +...+-+..+.+++.++.+..+.  ..+|
T Consensus       121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF  198 (354)
T PF05631_consen  121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPF  198 (354)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchH
Confidence            6789999999999998887777666543332221 111  1333333222 11122223333445555555443  6788


Q ss_pred             HHHHHHHHHHHHHHHh
Q 022513          200 LISSVATLIGLIALAI  215 (296)
Q Consensus       200 ~i~~~~~~~~~i~~~~  215 (296)
                      .....+.+++.++...
T Consensus       199 ~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  199 DAAIVLLAVAAVLILK  214 (354)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8877777666655443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.81  E-value=6e-08  Score=88.22  Aligned_cols=139  Identities=15%  Similarity=0.054  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      .+.+....++.....+++..+++.|+++.+|++..+++.......+...++.+++|+++|| +|||+.+..+......+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHH
Confidence            3444444444455566778889999999999999999988888888899999999999999 799988877776666555


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      .++..... +              ..+...+.+...+.+++.|...+...++.+|.+|. +      +++..+..+...+
T Consensus       306 ~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~  363 (366)
T TIGR00886       306 FLVVLGLV-S--------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGLVGAIGN  363 (366)
T ss_pred             HHHHhcCC-C--------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHHHHHhcc
Confidence            54443210 0              00233444445555556666666666777787763 2      6777777665555


Q ss_pred             HH
Q 022513          177 LA  178 (296)
Q Consensus       177 ~G  178 (296)
                      +|
T Consensus       364 ~g  365 (366)
T TIGR00886       364 LG  365 (366)
T ss_pred             CC
Confidence            54

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.81  E-value=5.3e-07  Score=80.87  Aligned_cols=165  Identities=13%  Similarity=0.008  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +..|.+.+-.-+++..+|.+..++|.++. +.|+|..+++..++...+......+..-.+++|.-.+|+.....+..+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            34566666677789999999999999876 56999999999999999999999999999999855788888888888888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      |.+.+.+...                  +.  .+...+++|+|.|+..+....++.+-.++.+  +   .++..++.+-.
T Consensus       287 G~~G~~~~P~------------------~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgmaQg~  341 (395)
T COG2807         287 GLVGLLLAPG------------------QL--PILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGMAQGV  341 (395)
T ss_pred             HHHHHHHhhh------------------hH--HHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHHhhhh
Confidence            8887765431                  11  1222478999999999999999988776432  2   34555555545


Q ss_pred             HHHHHHHHHhhhhhhcccc-chhHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVA  205 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~  205 (296)
                      ..+=+.+||.+.|++.|.. +|+..+...+..
T Consensus       342 GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         342 GYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             hHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            5555667899999998865 587666544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.78  E-value=2.3e-07  Score=86.53  Aligned_cols=163  Identities=8%  Similarity=-0.048  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhh-cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNE-MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      .+..+...++......+..++++.|+++. .+.+...++...+.+..+..++.+++++++|| +++|+++.++.++.++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence            34444455554445556778889998653 35555555556666667888999999999999 79999988887777766


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      .++.....                  +.  ......++.|+..+...|++.+...+..+++..     .++.  ... +.
T Consensus       313 ~ll~~~~~------------------~~--~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~-----~~s~--~l~-~~  364 (410)
T TIGR00885       313 CLGSIFAG------------------GH--VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTK-----YGAA--GLV-MA  364 (410)
T ss_pred             HHHHHHcC------------------Ch--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhHH--HHH-HH
Confidence            55544321                  11  234556677788888889999999998875431     1121  112 23


Q ss_pred             HHHHHHHHhhhhhhcccc------chhHHHHHHHHHHHH
Q 022513          176 TLAAMIGVTAIVYVFIDQ------GWWLGFLISSVATLI  208 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~~------gw~~~f~i~~~~~~~  208 (296)
                      .+|+.+.|.+.+++.|..      +.+.+|.++..+.+.
T Consensus       365 ~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       365 IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            489999999999999853      477888887776543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.76  E-value=3.9e-07  Score=85.21  Aligned_cols=157  Identities=13%  Similarity=0.044  Sum_probs=111.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |+....++..++...++....+.+..|.+-.+|.+.............+..++.++...+++| +|||+++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHH
Confidence            445555555666666655555666677777788887777777777777777779999999999 7999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh-hhhhHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA-LASYFNFYLF  173 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~-r~~~~~~~~~  173 (296)
                      +.+++.+..                 ..+..++++..++.++|.+...+...++++|..+-.+-++-++ -|..++.+.+
T Consensus       315 ~~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF  377 (467)
T COG2211         315 GYLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTF  377 (467)
T ss_pred             HHHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHH
Confidence            998887753                 1346778888899999999999999999999877432222222 2455555555


Q ss_pred             HHHHHHHHHHhhhhhh
Q 022513          174 ATTLAAMIGVTAIVYV  189 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l  189 (296)
                      ..=+|..++..+.+++
T Consensus       378 ~~K~g~ala~~~~g~~  393 (467)
T COG2211         378 FRKLGLALAGFIPGWI  393 (467)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555444443

>PRK11462 putative transporter; Provisional

Probab=98.71  E-value=7.8e-07  Score=84.28  Aligned_cols=154  Identities=12%  Similarity=0.050  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      ...++...++...+..........|.+..+|.+ ...+.+...+.+++.++.+++++++|| +|||+++..+..+..+..
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~  307 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVIS  307 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence            333333444444443333333333333334433 334455667777888899999999999 799988765554443333


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhh-hhhHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL-ASYFNFYLFAT  175 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r-~~~~~~~~~~~  175 (296)
                      ++..+.   +              ..+...+++..++.|++.++..+...++++|..+.++-++.+++ +..++.+.+..
T Consensus       308 ~~~~~~---~--------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~  370 (460)
T PRK11462        308 LAMFFV---P--------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVL  370 (460)
T ss_pred             HHHHHh---c--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHH
Confidence            322221   1              01122334445566777776666667888887764321122222 44456655677


Q ss_pred             HHHHHHHHhhhhhh
Q 022513          176 TLAAMIGVTAIVYV  189 (296)
Q Consensus       176 ~~G~~i~~~~~~~l  189 (296)
                      .+|..+++.+++++
T Consensus       371 Klg~alg~~i~g~i  384 (460)
T PRK11462        371 KLGLAFGGALIGWM  384 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777666554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.66  E-value=5.8e-07  Score=80.81  Aligned_cols=147  Identities=12%  Similarity=0.040  Sum_probs=96.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHHhHHHHhhh--hcCC-----------------ChhhHHHHHHHHHHHHHHHHhHHHHH
Q 022513           14 FRACTFVFVLSALENMGFIANGISMVLYFKN--EMHF-----------------DIAGASNTLTNFFGSTFLLCLVGGFI   74 (296)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~-----------------s~~~a~~~~~~~~~~~~~~~l~~G~l   74 (296)
                      +|.-+.+-.+.|...+.+||..-......+.  ..+.                 +...--.-........+-|.++.+++
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            3444555567778888999876433322221  1111                 11111111223455667889999999


Q ss_pred             hhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCC
Q 022513           75 SDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD  154 (296)
Q Consensus        75 aDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~  154 (296)
                      -|| +|||+++..+.+++.+..+++..+..               ......+++.+|+++..+    ..+.+.|..|.+|
T Consensus       405 ver-lGRKkTMal~l~~f~iflfll~~c~~---------------rn~~tvllf~arafisg~----fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  405 VER-LGRKKTMALSLILFGIFLFLLTTCKT---------------RNAYTVLLFTARAFISGA----FQVAYVYTPEVYP  464 (528)
T ss_pred             HHH-hcchhHHHHHHHHHHHHHHHHHHhcC---------------cchhHHHHHHHHHHHhch----heEEEEecCcccc
Confidence            999 89999999999888877666554421               012235666777776544    3556788899999


Q ss_pred             CCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 022513          155 ENDPKGAKALASYFNFYLFATTLAAMIGVTAI  186 (296)
Q Consensus       155 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  186 (296)
                      +..      |+++.+.-.-+..+|+++.|.++
T Consensus       465 Tav------RatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  465 TAV------RATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence            876      67777777777899999999887

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.65  E-value=3e-06  Score=78.22  Aligned_cols=138  Identities=7%  Similarity=-0.091  Sum_probs=91.3

Q ss_pred             HHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 022513           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (296)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~  114 (296)
                      ....+.|+++.+|.++.+.+.......++..++.++.+++.|| +||+...  +.....++.+.........        
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~--------  295 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVICCLLAGLLMWIPGWFG--------  295 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence            3455667888899999888887777777778888888888888 5743322  2222222322222111100        


Q ss_pred             CCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 022513          115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG  194 (296)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g  194 (296)
                            ..+...+..+.++.++|.+...+...++..|.+|++       +++..+..+...++|+.+++.+.+++.....
T Consensus       296 ------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~  362 (394)
T PRK11652        296 ------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQ  362 (394)
T ss_pred             ------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence                  012344566678888888888888888888888732       4666677777788999999988888765544


Q ss_pred             hh
Q 022513          195 WW  196 (296)
Q Consensus       195 w~  196 (296)
                      +.
T Consensus       363 ~~  364 (394)
T PRK11652        363 FS  364 (394)
T ss_pred             HH
Confidence            43

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.64  E-value=8e-07  Score=82.17  Aligned_cols=175  Identities=13%  Similarity=0.023  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH-
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV-   93 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~-   93 (296)
                      +..+......+..-+.+-...++.+.+++++.|+|.++.|.+.++..+...+.+++.|.++|| +|.||-++....+.. 
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHH
Confidence            345555555555555544566889999999999999999999999999999999999999999 797666544433322 


Q ss_pred             -HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           94 -LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        94 -ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                       .+.......  .|.++               .-+.++..+.++..+....+..+. .|.+-++.   .++.+-=++-.-
T Consensus        86 l~~pff~~v~--~pll~---------------~n~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~---sr~~~feYG~~R  144 (412)
T PF01306_consen   86 LFGPFFIYVF--GPLLQ---------------SNFWLGAIIGGIYLGLVFNAGVPL-SEAYAERV---SRRNGFEYGRAR  144 (412)
T ss_dssp             TCHHHHHHTH--HHHHH---------------TT-HHHHHHTTTTTTTTTTTHHHH-HHHHHHHH---HHHHSS-HHHHH
T ss_pred             HHHHHHHHHH--HHHHH---------------HHHHHHHHHHHHHHHHHHcccchH-HHHHHHHH---HHHhcCCcchHH
Confidence             232222111  01100               012333344444444333322221 24433111   011111122223


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ....+|..++..++|++.+ .+....|++..+..++..++
T Consensus       145 ~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~ll  183 (412)
T PF01306_consen  145 MWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLL  183 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHH
Confidence            4577788888888888765 34456777665544433333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.60  E-value=1.2e-06  Score=83.39  Aligned_cols=182  Identities=10%  Similarity=-0.020  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhh----HHHHHHHHHHHHHHHHhHHH----HHhhhcCchhHH--HHHHHH
Q 022513           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAG----ASNTLTNFFGSTFLLCLVGG----FISDTYLSRFAT--CLVFGT   90 (296)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~----a~~~~~~~~~~~~~~~l~~G----~laDr~~GRr~~--i~~~~~   90 (296)
                      +....+....+....+.++.|.++..+.+...    .+++.+...+...+..++..    ++.||..+.+..  +.+|.+
T Consensus       278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~  357 (475)
T TIGR00924       278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML  357 (475)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            33334444555556666777777654443221    44555555555555555533    455542122332  367788


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~  170 (296)
                      +..++.+.+.+.......          +...+.++++...++.++|.....|...++.+|..|++.      |++.++.
T Consensus       358 l~~~~~~~~~~~~~~~~~----------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~  421 (475)
T TIGR00924       358 FCGASFLTFAASIWFADA----------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGM  421 (475)
T ss_pred             HHHHHHHHHHHHHhhcCC----------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence            877777666543211100          012356778889999999999999999999999998654      8899999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (296)
Q Consensus       171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  218 (296)
                      ++....+|..+++.+.....+..+|...|...++..++..++++..+|
T Consensus       422 ~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       422 WFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888777666667777777776666555555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.59  E-value=4.1e-06  Score=77.94  Aligned_cols=174  Identities=13%  Similarity=-0.015  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513           22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI  101 (296)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~  101 (296)
                      +..++...+.-....+...|+++.-+.+....+...++..+.-...-.+.+++-.| +|-|+++.++.+.+++=..+.+.
T Consensus       214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444433345677888876555776666766666666777777888999999 79999999999888776555554


Q ss_pred             HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHHH
Q 022513          102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAAM  180 (296)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~  180 (296)
                      ... +.             .........+..+-|+..|....+...++.+..|++.      |.+..+++.. ...+|..
T Consensus       293 ~~~-~~-------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~  352 (400)
T PF03825_consen  293 FSD-PW-------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGA  352 (400)
T ss_pred             hcC-Cc-------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHH
Confidence            311 00             0011223334456888888888999999999999776      6777777764 5678999


Q ss_pred             HHHhhhhhhccccchh------HHHHHHHHHHHHHHHHHHhc
Q 022513          181 IGVTAIVYVFIDQGWW------LGFLISSVATLIGLIALAIG  216 (296)
Q Consensus       181 i~~~~~~~l~~~~gw~------~~f~i~~~~~~~~~i~~~~~  216 (296)
                      +|..++|++.+++|-+      ..+.+++++.++..++++..
T Consensus       353 iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  353 IGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998876533      44555555555555555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.57  E-value=4.1e-06  Score=78.23  Aligned_cols=168  Identities=11%  Similarity=0.021  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      .++......++....+++.....|.|+++.+|.+..+.++......++..++..+.+.+.++ .++++.+.....+..+|
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ig  297 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLVG  297 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHH
Confidence            34444445555666667777778899999999999998887766667777777777766544 24444444444444455


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      .+++.......              ...+...+++.++.++|.+...++.....-.+.+  .+     +++..+.+....
T Consensus       298 ~~l~~~~~~~~--------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~--~~-----~G~a~a~~~~~~  356 (413)
T PRK15403        298 LALLIVGNLLW--------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN--LP-----KGTVSASLNMVI  356 (413)
T ss_pred             HHHHHHHHHHc--------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC--CC-----CcHHHHHHHHHH
Confidence            44443321100              0122335667778888888877777643322222  11     345555555555


Q ss_pred             HHHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513          176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVAT  206 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~  206 (296)
                      ..+..+++.+.+++.++ +-.++|....++.
T Consensus       357 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  386 (413)
T PRK15403        357 LMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA  386 (413)
T ss_pred             HHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence            56666666677776554 3355555544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.50  E-value=6e-06  Score=77.34  Aligned_cols=170  Identities=17%  Similarity=0.124  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh---cCchhHH-HHHHHHHHHHHHH
Q 022513           22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFAT-CLVFGTLEVLSLV   97 (296)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr---~~GRr~~-i~~~~~~~~ig~~   97 (296)
                      ...+..++.+-.+..++..|.++..|+++..++.+..+.-+.-++.-|+.|.+.||   .+||+|- ++.+.+...+..+
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            35666777777778899999999999999999999999999999999999999997   2688765 4455566666666


Q ss_pred             HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (296)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (296)
                      ++..+.   ...          .+......++--++.+++......+..++.+|+-++  ++|   |.+..++-....++
T Consensus        99 l~F~~p---~~~----------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~  160 (467)
T COG2211          99 LLFITP---DFS----------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASL  160 (467)
T ss_pred             HHHcCC---Ccc----------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHH
Confidence            555442   111          123444555666778888888888888888888764  334   67888888888888


Q ss_pred             HHHHHHhhhhhhc-----c--ccchhHHHHHHHHHHHHH
Q 022513          178 AAMIGVTAIVYVF-----I--DQGWWLGFLISSVATLIG  209 (296)
Q Consensus       178 G~~i~~~~~~~l~-----~--~~gw~~~f~i~~~~~~~~  209 (296)
                      |..+...+...+.     +  ..||+..-.+.+++..+.
T Consensus       161 g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~  199 (467)
T COG2211         161 GGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL  199 (467)
T ss_pred             HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence            8776654443332     2  346665555554444333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.50  E-value=1.1e-05  Score=73.95  Aligned_cols=168  Identities=16%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 022513           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAY  104 (296)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~  104 (296)
                      +...++++.=-..+-+|--+.||++..+.+.++..+..+..++..+.|++..|..|++++..+++...+++..+...+..
T Consensus       218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~  297 (403)
T PF03209_consen  218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP  297 (403)
T ss_pred             HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444443333455678888999999999999999999999999999999886589999988999999888877776653


Q ss_pred             ccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 022513          105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT  184 (296)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~  184 (296)
                      .                .+.+.+..+.++.|+|.|.+.......+-|+..+.+      .|...+.+..+..++..++..
T Consensus       298 ~----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~  355 (403)
T PF03209_consen  298 L----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTF  355 (403)
T ss_pred             c----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHH
Confidence            1                235688999999999999988888888888876543      467777777766666666666


Q ss_pred             hhhhhcc----------ccchhHHHHHHHHHHHHHHHHHH
Q 022513          185 AIVYVFI----------DQGWWLGFLISSVATLIGLIALA  214 (296)
Q Consensus       185 ~~~~l~~----------~~gw~~~f~i~~~~~~~~~i~~~  214 (296)
                      +++.+.|          ..+|...|.+-++.+++++.+..
T Consensus       356 ~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  356 LGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            5554432          23577788888777776665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.44  E-value=1.3e-05  Score=69.53  Aligned_cols=129  Identities=10%  Similarity=0.009  Sum_probs=87.5

Q ss_pred             HHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 022513           31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP  110 (296)
Q Consensus        31 ~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~  110 (296)
                      .|....+- ..+++.+|+|.++...+...-.++..+| ++.|.+.|+ +|.+.++.+|.+...+|..++..+.. .... 
T Consensus        18 ~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~-~~i~-   92 (250)
T PF06813_consen   18 TYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS-GRIP-   92 (250)
T ss_pred             ccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh-CccC-
Confidence            34444333 4578899999999998888888888875 788999999 79999999999999999998887642 1110 


Q ss_pred             CCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513          111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI  181 (296)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i  181 (296)
                                ....+.+.+..++.+.+.+...........+.||++       ||+..+..--...+++.+
T Consensus        93 ----------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai  146 (250)
T PF06813_consen   93 ----------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAI  146 (250)
T ss_pred             ----------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHH
Confidence                      123455555555565655555455445556889853       677666644334444443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.41  E-value=8.6e-06  Score=74.19  Aligned_cols=155  Identities=15%  Similarity=0.094  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~   96 (296)
                      .+...+..|+--..-..+..++++|+.+..|++..+++..++.+.++..+|..++.++-.| +-..|.+.+.+++.++-.
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHH
Confidence            3444445555444445667899999999899999999999999999999999999999889 788888877776555444


Q ss_pred             HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      +...+..                   + ..-+.+.+++|+..+...|++.+...+..|++..     .++..   -.+..
T Consensus       317 ~~~~l~~-------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~~---l~mai  368 (422)
T COG0738         317 LAVALIG-------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSGL---LVMAI  368 (422)
T ss_pred             HHHHHhc-------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cccee---eeehe
Confidence            3333332                   1 2334456788999999999999999999995441     23332   22578


Q ss_pred             HHHHHHHhhhhhhccccchhHHHH
Q 022513          177 LAAMIGVTAIVYVFIDQGWWLGFL  200 (296)
Q Consensus       177 ~G~~i~~~~~~~l~~~~gw~~~f~  200 (296)
                      +|+.+-|.+.|++.|..+-...+.
T Consensus       369 vGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         369 VGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             ecchHHHHHHHHHHHhhhhHHHHH
Confidence            889999999999999988776655

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.40  E-value=6.3e-06  Score=76.28  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcC---CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMH---FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      |..|..++........++..-...+.|.+..++   .++...+...++-.+.-++.-.+..++-+| +|.|+.++++..+
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence            556655554444444444444556777776543   334445666677777778888899999999 7999999998888


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      +.+=.+...+++                   +.+.+.+...+-++-.+.......-|+++.+|++-      ..+.+.+.
T Consensus       299 ~~iRi~~~~~~~-------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~  353 (412)
T PF01306_consen  299 MAIRIIGSGFAT-------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVG  353 (412)
T ss_dssp             HHHHHHHHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHH
T ss_pred             HHHHHHHHhhhc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence            777655554432                   34667788888888888888888999999999543      34555553


Q ss_pred             -HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          172 -LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       172 -~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                       +++..+|..+.+.++|++.|+.|++..|++.+.+.+...++
T Consensus       354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li  395 (412)
T PF01306_consen  354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLI  395 (412)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence             46778888888889999999999998888777665544333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.39  E-value=4.8e-08  Score=94.01  Aligned_cols=189  Identities=13%  Similarity=0.159  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHh
Q 022513           24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA  103 (296)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~  103 (296)
                      .+.+ ...++......+-+++.|++++++++++.+.+.++..+..++..+.++| --|=|-+-++.++..+|.+++++..
T Consensus        12 ~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPh   89 (539)
T PF03137_consen   12 GLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPH   89 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccH
Confidence            3444 5556666666677899999999999999999999999999999999999 3555567788888999998887654


Q ss_pred             hccC-CC--------------CCCCC--------C--CCcC---C---cchHHHHHHHHHHHHHcCcCcccchhhhhccc
Q 022513          104 YSKS-LH--------------PPDCG--------K--SSCL---K---GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQ  152 (296)
Q Consensus       104 ~~~~-~~--------------~~~~~--------~--~~~~---~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~  152 (296)
                      +... ..              ...|.        +  ..|.   .   ..-+..++++.++.|+|.....+.-.+|+=|.
T Consensus        90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn  169 (539)
T PF03137_consen   90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN  169 (539)
T ss_dssp             --------------------------------------------------------------SSS---------------
T ss_pred             hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence            3211 10              01220        0  0000   1   11256788899999999999999999999888


Q ss_pred             CCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------c-------------c-chhHHHHHHHHHHHHHH
Q 022513          153 FDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI--------D-------------Q-GWWLGFLISSVATLIGL  210 (296)
Q Consensus       153 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~--------~-------------~-gw~~~f~i~~~~~~~~~  210 (296)
                      .++++      -..+.+.++.+..+|..+|.++++....        .             . .|+.+|.+.+++.++..
T Consensus       170 v~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a  243 (539)
T PF03137_consen  170 VSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA  243 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            77654      4566777777888888888777654310        0             1 27778877777665554


Q ss_pred             HHHHhcCCcee
Q 022513          211 IALAIGKPFYR  221 (296)
Q Consensus       211 i~~~~~~~~~~  221 (296)
                      +.+ ...||..
T Consensus       244 ipl-~~FPk~l  253 (539)
T PF03137_consen  244 IPL-FFFPKKL  253 (539)
T ss_dssp             -----------
T ss_pred             HHH-HcCCccC
Confidence            433 3445544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.33  E-value=2.8e-05  Score=67.15  Aligned_cols=140  Identities=19%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             hhcCCCh--hhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCc
Q 022513           44 NEMHFDI--AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG  121 (296)
Q Consensus        44 ~~l~~s~--~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (296)
                      .+++.+.  ...+...+.+.....++.++.|.++|| .|||+.+..+.....++.+.......                 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------   91 (338)
T COG0477          30 STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN-----------------   91 (338)
T ss_pred             HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-----------------
Confidence            3444444  467788888888888888999999999 59998888777664555333333221                 


Q ss_pred             chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHHHHHHhhhhhhcc--ccchhHH
Q 022513          122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAAMIGVTAIVYVFI--DQGWWLG  198 (296)
Q Consensus       122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~~~~~l~~--~~gw~~~  198 (296)
                      .....+++.|...|++.|...+...++++|.+|. .    ..|+...+.... ...+|..+++.+.+.+..  ..+|+..
T Consensus        92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T COG0477          92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA  166 (338)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            1356788888889999998889999999999886 1    125666666655 466777777765555443  3578886


Q ss_pred             HHHHHHHH
Q 022513          199 FLISSVAT  206 (296)
Q Consensus       199 f~i~~~~~  206 (296)
                      |.+.....
T Consensus       167 ~~~~~~~~  174 (338)
T COG0477         167 FLLAALLG  174 (338)
T ss_pred             HHHHHHHH
Confidence            65554433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.26  E-value=3.6e-05  Score=71.08  Aligned_cols=107  Identities=10%  Similarity=-0.022  Sum_probs=75.6

Q ss_pred             HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 022513           38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS  117 (296)
Q Consensus        38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  117 (296)
                      ..+|..+.+| +...+.+...+|+.......+.+-|+.|+ +|-|.+.+++.+...+|..+-..+.. +...+       
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~-p~v~~-------  136 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSL-PFVPP-------  136 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccC-ccccc-------
Confidence            3456667777 66677788889999999999999999999 79999999999999999988776642 32211       


Q ss_pred             cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCC
Q 022513          118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND  157 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~  157 (296)
                         .........|..+.+...-.+...-+-..+-+|++++
T Consensus       137 ---~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q  173 (480)
T KOG2563|consen  137 ---LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ  173 (480)
T ss_pred             ---cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch
Confidence               0011255566677666655444443444455688665

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.26  E-value=0.00013  Score=67.92  Aligned_cols=114  Identities=14%  Similarity=0.070  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 022513           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT  100 (296)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~  100 (296)
                      ....++.-+.+-...++++.|+++ .|+|..+.+.+.++..+...+++++.|+++||+..+||.+.+..++..+......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455788899876 6799999999999999999999999999999953456666665555444332222


Q ss_pred             HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCC
Q 022513          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD  154 (296)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~  154 (296)
                      ...                   +...+++..++..+......|...++.-+...
T Consensus        87 ~~~-------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   87 FSS-------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             Hhc-------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            211                   23344445555566555555555555555444

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.25  E-value=1.1e-05  Score=56.77  Aligned_cols=67  Identities=13%  Similarity=0.022  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      ..++...+.-.+.++++.|+++ .|+++.+.+.+.++......+++++.|+++|| +||++.+.....+
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~   74 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence            3444444555567888888874 89999999999999999999999999999999 6998887765543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.2e-05  Score=76.47  Aligned_cols=163  Identities=15%  Similarity=0.080  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATCLVFGTLE   92 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~i~~~~~~~   92 (296)
                      .+|...+..++.....|+...+++.|+++..|+|..++..+...+.++..++.+++|+++||.   +.+|........++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            356666777888888899999999999997789999999999999999999999999999992   24555544444433


Q ss_pred             -HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           93 -VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        93 -~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                       .+|.+.+.....                   ......+.+....+.+...++......+....+.   +  +-+..+.+
T Consensus       354 ~~~g~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~---k--~~~~~~~~  409 (495)
T KOG2533|consen  354 AIIGAISLLAAAV-------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT---K--ALTTVSAI  409 (495)
T ss_pred             HHHHHHHHHhhcc-------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH---H--hHHHHhhh
Confidence             334333332211                   1112222222333333344444555555554332   1  34444444


Q ss_pred             HHHHHHHHHHHH-hhhhhhccccchhHHHHHH
Q 022513          172 LFATTLAAMIGV-TAIVYVFIDQGWWLGFLIS  202 (296)
Q Consensus       172 ~~~~~~G~~i~~-~~~~~l~~~~gw~~~f~i~  202 (296)
                      ..+.+.++.+++ +..+.....++|...|...
T Consensus       410 i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~  441 (495)
T KOG2533|consen  410 IDGTGSAGAISGQLFRSLDAPRYGWGAVFYML  441 (495)
T ss_pred             hcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence            444444444443 3344455557788777443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.24  E-value=3.9e-05  Score=72.50  Aligned_cols=174  Identities=19%  Similarity=0.084  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHhH---HhHHHHhhhhcCCChhh-HHHHHHHH----HHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           18 TFVFVLSALENMGFIANG---ISMVLYFKNEMHFDIAG-ASNTLTNF----FGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~s~~~-a~~~~~~~----~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      ..+....+...++.+...   .+...+.....+.+... ........    .+...+.+++-|.++|| +|||..+....
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~   99 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPL   99 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHH
Confidence            344445555555554444   44445554444443322 22233332    45667888999999999 69999999988


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHH--cCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL--GCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (296)
Q Consensus        90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~  167 (296)
                      +...+..+...+..                     +++++   +.++  +.+...+...++++|...++.      |...
T Consensus       100 ~~~~l~~~~~~~~~---------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~  149 (463)
T KOG2816|consen  100 FGTILPALCLLFQG---------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSS  149 (463)
T ss_pred             HHHHHhHHHHHHHH---------------------HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHH
Confidence            88877766655432                     12222   3332  334466777788888776543      7777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceee
Q 022513          168 FNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRI  222 (296)
Q Consensus       168 ~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~  222 (296)
                      ++..+.+...+..++|..++++.+..|....|.+..+..+++.+......|+-+.
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            7887777888899999999999888888889999888877776655555555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.22  E-value=1.7e-05  Score=74.57  Aligned_cols=155  Identities=17%  Similarity=0.115  Sum_probs=109.0

Q ss_pred             HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc--Cc--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513           38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY--LS--RFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (296)
Q Consensus        38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~--~G--Rr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~  113 (296)
                      ...|+++++|+++++.....+...+-- ..-++.|.++|.+  +|  ||+-++++.++..++.+.+....   ..     
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~~-----   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---AS-----   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---cc-----
Confidence            346788999999998777666555443 3466789999984  24  45556667776655554444322   10     


Q ss_pred             CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ  193 (296)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  193 (296)
                             ..+.....+..++..+|........-+...|....+.. +   ++...++.+....+|+.++..+.|.+.+..
T Consensus        83 -------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-~---~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~  151 (433)
T PF03092_consen   83 -------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE-S---RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF  151 (433)
T ss_pred             -------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-h---hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence                   11234455566778888888888888999998765432 1   677888888899999999999999998888


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 022513          194 GWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       194 gw~~~f~i~~~~~~~~~i~  212 (296)
                      +++..|.+.+++.++..+.
T Consensus       152 ~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen  152 GPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             CCeEEehHHHHHHHHHHHH
Confidence            8888888877665555433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.20  E-value=5.2e-05  Score=72.67  Aligned_cols=178  Identities=14%  Similarity=-0.013  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhHHhHHHHhhh--hcCCCh------hhHHHHHHHHHHHHHHHHhHH----HHHhhhcCchhHHHHHHHHH
Q 022513           24 SALENMGFIANGISMVLYFKN--EMHFDI------AGASNTLTNFFGSTFLLCLVG----GFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~--~l~~s~------~~a~~~~~~~~~~~~~~~l~~----G~laDr~~GRr~~i~~~~~~   91 (296)
                      .+.....+|.+...++.++..  ..+.+.      ...++..++..+...+..++.    +++.|| ++..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHH
Confidence            334455556665666655432  111111      113344444444555555555    556666 5666788889999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..+|.+.+.........         + ...+..++....++.++|.+...|...+++.+..|++.      |++.++.+
T Consensus       360 ~~l~f~~l~~~~~~~~~---------~-~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~  423 (500)
T PRK09584        360 CSGAFLVLPLGAKFAND---------A-GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSW  423 (500)
T ss_pred             HHHHHHHHHHHHHhcCC---------C-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHH
Confidence            88888777665422110         0 11234578888999999999999999999999998654      78888888


Q ss_pred             HHHHHHHHHHHHhhhhhhcc----------ccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513          172 LFATTLAAMIGVTAIVYVFI----------DQGWWLGFLISSVATLIGLIALAIGKP  218 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~----------~~gw~~~f~i~~~~~~~~~i~~~~~~~  218 (296)
                      +++..+|..++..+.+....          ..++...|...++..++..++++..+|
T Consensus       424 ~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        424 FLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777777777666543211          113556676655554433333333333

>TIGR00788 fbt folate/biopterin transporter

Probab=98.18  E-value=1.1e-05  Score=76.71  Aligned_cols=136  Identities=11%  Similarity=-0.153  Sum_probs=100.4

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcc
Q 022513           43 KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGA  122 (296)
Q Consensus        43 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (296)
                      .+.+|+++...+.......++..++..+.+++.+| ++.|+++.++.++..++.+.............         ...
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---------gi~  349 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---------GIS  349 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc---------CCC
Confidence            45789999999999999889999999999999999 79999999999888877644321110000000         000


Q ss_pred             hHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 022513          123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG  194 (296)
Q Consensus       123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g  194 (296)
                      .........++.+++.+....+...++.+..|++.      +++.++++....++|..+++.+++++.+..|
T Consensus       350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            11233344566777777777888899999999766      6888999888889999999988888876655

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.11  E-value=7.7e-05  Score=71.31  Aligned_cols=144  Identities=10%  Similarity=-0.017  Sum_probs=93.3

Q ss_pred             HHHHHhHHhHHHHhhhhcCCChh----hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-------HHHHHHHHHHHHHH
Q 022513           29 MGFIANGISMVLYFKNEMHFDIA----GASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-------TCLVFGTLEVLSLV   97 (296)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~----~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-------~i~~~~~~~~ig~~   97 (296)
                      ..+......++.|.++..+.+..    ...++.+...+...+..++.+++.|| +|||+       -+.+|.++..++.+
T Consensus       283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~~~~~~  361 (489)
T PRK10207        283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLCSLGFL  361 (489)
T ss_pred             HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            33444446667777643322210    22344444445566777788999999 79887       36677777777765


Q ss_pred             HHHHHhh-ccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513           98 MLTIQAY-SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (296)
Q Consensus        98 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~  176 (296)
                      .+..... ....+          ...+.+++....++.|+|.+...+....++.+..|++.      ++...+.+++..+
T Consensus       362 ~~~~~~~~~~~~~----------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~~l~~~  425 (489)
T PRK10207        362 TAAAAGMWFADAQ----------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMWFLTQA  425 (489)
T ss_pred             HHHHHHHhhcCCC----------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHHHHHHH
Confidence            4432111 01000          01234556677888999999999999999999888554      6788888888888


Q ss_pred             HHHHHHHhhhhhh
Q 022513          177 LAAMIGVTAIVYV  189 (296)
Q Consensus       177 ~G~~i~~~~~~~l  189 (296)
                      +|+.++..++...
T Consensus       426 ig~~lg~~l~~~~  438 (489)
T PRK10207        426 AAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHh
Confidence            8988887776544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.11  E-value=1.8e-08  Score=94.62  Aligned_cols=186  Identities=16%  Similarity=0.022  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      +.....+....+..+..+....+...++.+..+.++.  -.......+...++.+++.++.|| +|||+.++.+.++..+
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccc
Confidence            3444444444444444333333444445556666665  222223345566777888899999 7999999998888776


Q ss_pred             HHHHHH-HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCc-CcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513           95 SLVMLT-IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCG-GNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (296)
Q Consensus        95 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~  172 (296)
                      ..+.+. ........        +  ...+.. .++...+...+.+ +..+....+.+|.||++.      |.+..+..+
T Consensus       329 ~~~~~~~~~~~~~~~--------~--~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~  391 (451)
T PF00083_consen  329 CSLILGIIFFLGVSS--------S--SWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSY  391 (451)
T ss_pred             ccccccccccccccc--------c--cccccc-cceeeeeccccccccccccccccccccccccc------ccccccccc
Confidence            665553 11000000        0  000111 1111112212222 233555578899999876      777777777


Q ss_pred             HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY  220 (296)
Q Consensus       173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~  220 (296)
                      ....+++.+++.+..++.+..+-...+.+.+++.++..+..+...|+.
T Consensus       392 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  392 AVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             ccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            777788888887777777665523344454444444444444444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=9.4e-06  Score=73.77  Aligned_cols=162  Identities=16%  Similarity=0.016  Sum_probs=107.6

Q ss_pred             HHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCc--hhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513           28 NMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS--RFATCLVFGTLEVLSLVMLTIQAYS  105 (296)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G--Rr~~i~~~~~~~~ig~~~~~~~~~~  105 (296)
                      +...-..-+.+++++.+.+..+..+.+..-.-..+...++..+.|.++|| +|  |......+.+  ++|......    
T Consensus       283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~--~~G~~~~~i----  355 (464)
T KOG3764|consen  283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLA--TVGVSSGPI----  355 (464)
T ss_pred             cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHH--HHHHHhchh----
Confidence            33333345666777888888555577766666677889999999999999 68  5332223322  233211111    


Q ss_pred             cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513          106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA  185 (296)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~  185 (296)
                      |.             .+++..+.+-+...+++.+...+.......+..+.++..+-...|+.++....+..+|..+||.+
T Consensus       356 P~-------------~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~  422 (464)
T KOG3764|consen  356 PF-------------ATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTF  422 (464)
T ss_pred             Hh-------------hhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccc
Confidence            11             12456677777778888877777776666777765442211136788888888999999999999


Q ss_pred             hhhhccccchhHHHHHHHHHHHHH
Q 022513          186 IVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       186 ~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      ++.+.+..|++|.-.+.++..++-
T Consensus       423 gg~iv~~iGF~wl~~iig~~n~iy  446 (464)
T KOG3764|consen  423 GGSLVEAIGFEWLMTIIGILNLIY  446 (464)
T ss_pred             cchheeehhHHHHHHHHHHHHHHH
Confidence            999999999888766666554443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.05  E-value=0.00018  Score=66.05  Aligned_cols=140  Identities=14%  Similarity=-0.001  Sum_probs=93.5

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCc-----hhHH-HHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513           42 FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS-----RFAT-CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (296)
Q Consensus        42 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G-----Rr~~-i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  115 (296)
                      +..|++++..-.+..+..-... ....+..|+.||++ +     ||.- ++.|..+...|..+...+.......    ..
T Consensus         6 MIvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~----~~   79 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES----GQ   79 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc----cc
Confidence            4567888877777766665544 44588899999994 5     4443 5566777776666655543211110    00


Q ss_pred             CCcCCcchH--HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513          116 SSCLKGAIA--AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ  193 (296)
Q Consensus       116 ~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  193 (296)
                      .+ +.....  ....+...+.|+|.+....+..++.+|..|+++      |.+..++.|.+.-+|..++..+.+.+.+.+
T Consensus        80 ~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   80 QS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             cc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            00 001112  233344556888888888999999999998765      788999999999999999998888777665


Q ss_pred             c
Q 022513          194 G  194 (296)
Q Consensus       194 g  194 (296)
                      +
T Consensus       153 s  153 (403)
T PF03209_consen  153 S  153 (403)
T ss_pred             C
Confidence            5

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.04  E-value=0.00021  Score=68.64  Aligned_cols=90  Identities=14%  Similarity=0.066  Sum_probs=59.7

Q ss_pred             cCCchhHHHHHHHHHHHHH-HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513           11 KGGFRACTFVFVLSALENM-GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~   89 (296)
                      +..+|.....++...+..+ ++..+..+.+..+ +..|.+... .....+..+...++..++.++.|| +|||+.++.+.
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~  366 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGA  366 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhH
Confidence            3455555555555554444 4445555555554 344554332 344445566677788888999999 79999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 022513           90 TLEVLSLVMLTIQA  103 (296)
Q Consensus        90 ~~~~ig~~~~~~~~  103 (296)
                      +.+.++.+++....
T Consensus       367 ~~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  367 AGMSICLVILAVVG  380 (513)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988877654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.98  E-value=0.00012  Score=71.91  Aligned_cols=195  Identities=14%  Similarity=0.177  Sum_probs=135.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      .+.+..++....+......+......+-+++.++++..+.+++.+.+-++..+...+..+.+-| .=|=+.+-+|++++.
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMG  173 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHH
Confidence            3445444444444444444777777788899999999999999999999999999999999999 355566778999999


Q ss_pred             HHHHHHHHHhhccCC-------------CC-------------CCCCC--CCcC--Cc-c--hHHHHHHHHHHHHHcCcC
Q 022513           94 LSLVMLTIQAYSKSL-------------HP-------------PDCGK--SSCL--KG-A--IAAYFYGSLYLYSLGCGG  140 (296)
Q Consensus        94 ig~~~~~~~~~~~~~-------------~~-------------~~~~~--~~~~--~~-~--~~~~~~~~~~l~g~g~g~  140 (296)
                      +|.++.++..+...-             .+             ..|..  +.|.  .. .  -+.+++++.++.|+|.-.
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            999888765322110             00             01111  1221  11 1  245778889999999988


Q ss_pred             cccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc------------------cc-chhHHHHH
Q 022513          141 NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI------------------DQ-GWWLGFLI  201 (296)
Q Consensus       141 ~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~------------------~~-gw~~~f~i  201 (296)
                      ..+.-.+|+=|....++      -..+++..+....+|-++|.+++++...                  .. .|+.+|++
T Consensus       254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            88888888877666543      4567788888888888888887765421                  01 38888888


Q ss_pred             HHHHHHHHHHHHHh
Q 022513          202 SSVATLIGLIALAI  215 (296)
Q Consensus       202 ~~~~~~~~~i~~~~  215 (296)
                      ++++.++..+.++.
T Consensus       328 ~g~~~~~~a~p~f~  341 (735)
T KOG3626|consen  328 CGALLLFSAVPLFF  341 (735)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88887776665443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.92  E-value=0.00038  Score=66.13  Aligned_cols=204  Identities=10%  Similarity=-0.069  Sum_probs=128.7

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChh------hH---H-HHHHHHHHHHHHHHhHHHHHhhhcC
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIA------GA---S-NTLTNFFGSTFLLCLVGGFISDTYL   79 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~------~a---~-~~~~~~~~~~~~~~l~~G~laDr~~   79 (296)
                      ++-||.++.+....++.-++++....+...|+.+ .++-++.      +.   + +....+.+.+.+..++--++.++ +
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-W  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            3567899999999999888988888888888764 4543321      11   2 23334445555666677788998 7


Q ss_pred             ch-hHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCCCC-cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCC
Q 022513           80 SR-FATCLVFGTLEVLSLVMLTIQAYSKS-LHPPDCGKSS-CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEN  156 (296)
Q Consensus        80 GR-r~~i~~~~~~~~ig~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~  156 (296)
                      |+ |++..++.++..++.+...+...... ..+..-.+.. -+..+.....++...++|+..+...+.-.+++++..+++
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~  412 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL  412 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence            95 66668887777777766654332110 0000000000 000111244555667788888888888889999988743


Q ss_pred             ChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc--hhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          157 DPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG--WWLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       157 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g--w~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                      .    ++.|..+++.+.++.+...+..+..+.+.+..|  -..++.+.++.++++.+..+...|+
T Consensus       413 ~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       413 G----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             C----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            3    226888999999999999888877666544333  3467777777777776655554444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.90  E-value=6e-05  Score=69.84  Aligned_cols=178  Identities=11%  Similarity=0.038  Sum_probs=111.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHH--------HHHHHHHHHHH-HHhHHHHHhhhcCchhH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASN--------TLTNFFGSTFL-LCLVGGFISDTYLSRFA   83 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~--------~~~~~~~~~~~-~~l~~G~laDr~~GRr~   83 (296)
                      |-+.++-..+..|.-.+++|+...+...-++ .+++.+.+...        ...+...+..+ |..+...+.|+ +|||+
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~  379 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKY  379 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHH
Confidence            3355566666777778888887766655443 34444433222        12222333333 66777888999 89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513           84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (296)
Q Consensus        84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~  163 (296)
                      .-+.+.+++.+-.+.+...-.  +..         +..+-.....+..++.-+|=+.   +....-+|.||++.      
T Consensus       380 iq~~GF~~~~i~~~~~~~~y~--~~~---------~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FParv------  439 (538)
T KOG0252|consen  380 IQLMGFFIMTIFFFVIAGPYN--QLE---------NTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFPARV------  439 (538)
T ss_pred             HHHhhHHHHHHHHHHHcCCcc--ccc---------ccCceeehHHHHHHHHhcCCCc---eeEEeehhhchHHH------
Confidence            999998888776554443211  000         0011122233333444444443   34444569999665      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhcc-----ccchhHHHHHHHHHHHHHHHH
Q 022513          164 LASYFNFYLFATTLAAMIGVTAIVYVFI-----DQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~-----~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      |++..++...+.-+|++++.....++.+     ..+.+..+++.+.+++++.+.
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~  493 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF  493 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe
Confidence            8899888888889999999888888887     567888999888888776554

>PTZ00207 hypothetical protein; Provisional

Probab=97.74  E-value=0.00037  Score=67.76  Aligned_cols=176  Identities=7%  Similarity=-0.044  Sum_probs=112.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhc-CCChhh--HHHHHHHHHHHHHHHHhHHHHHhhhcCchhH--------
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEM-HFDIAG--ASNTLTNFFGSTFLLCLVGGFISDTYLSRFA--------   83 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-~~s~~~--a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~--------   83 (296)
                      ..+|.+....++...+-..+..|+- ++-+.+ |.+.++  ..+.+++.++++++|.+.+|++... .-||+        
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt  430 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPIT  430 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchh
Confidence            4567766666665554444444543 344556 663322  2237889999999999999998832 23332        


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhh
Q 022513           84 -TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK  162 (296)
Q Consensus        84 -~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~  162 (296)
                       .+.+..+ +.++.+++++..  |                 ...++++-++.|++.|..++...+..+|.|. ++     
T Consensus       431 ~~l~~~~~-~~~~~lll~~~~--p-----------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~-----  484 (591)
T PTZ00207        431 IALFIPSV-CIITMLTLFLTL--P-----------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD-----  484 (591)
T ss_pred             HHHHHHHH-HHHHHHHHHHHC--C-----------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc-----
Confidence             2333333 555655555442  2                 1368899999999999999999999999999 55     


Q ss_pred             hhhhhHHHHHHHHHHHHHHH-Hhhhhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          163 ALASYFNFYLFATTLAAMIG-VTAIVYVFI-------------DQGWWLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       163 ~r~~~~~~~~~~~~~G~~i~-~~~~~~l~~-------------~~gw~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                       -++.++..+.+.-+|+.+= -.+.|.+.|             ...++.+|.+.+++.+++.+.-....-|
T Consensus       485 -~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R  554 (591)
T PTZ00207        485 -PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ  554 (591)
T ss_pred             -hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence             5778887777777776652 234454432             1237788888877766665554443333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.70  E-value=0.00068  Score=65.82  Aligned_cols=151  Identities=12%  Similarity=0.029  Sum_probs=96.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-HHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA---GASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVF   88 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-~i~~~   88 (296)
                      ++|.+...+++.++....+|++..+.|......++-|..   ..++.......+..++.++.|.+.-+ ++|-| .++++
T Consensus       308 ~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~li~~  386 (599)
T PF06609_consen  308 DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQLIFG  386 (599)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHHHHH
Confidence            456677777788888888888888888877777766653   45666666777778888888999887 68755 44567


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (296)
Q Consensus        89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~  168 (296)
                      ++++.++...+....  +.               +....+...++.|+|.|...........-..|+++      .+...
T Consensus       387 ~~~~ta~~Gama~~~--~~---------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~a~  443 (599)
T PF06609_consen  387 SVLMTAFCGAMAAVR--PD---------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGTAT  443 (599)
T ss_pred             HHHHHHHHHHHHHcc--CC---------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHHHH
Confidence            666665544444332  11               11233455667888887765444443333334332      56776


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 022513          169 NFYLFATTLAAMIGVTAIV  187 (296)
Q Consensus       169 ~~~~~~~~~G~~i~~~~~~  187 (296)
                      ++....-.+|+.+|..+-.
T Consensus       444 gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  444 GLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHhhHHHHHHHH
Confidence            6666667777777765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.69  E-value=2.2e-06  Score=74.61  Aligned_cols=135  Identities=13%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  115 (296)
                      .-+..+.+.+.+++.++..++.++++--+.+.+.++|++-||.+|-|..-++-+.+..+|.++++.-..           
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-----------  132 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-----------  132 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence            345567777777777788888899999999999999999999889888766777777788877665321           


Q ss_pred             CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 022513          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~  192 (296)
                           ....+.+..||++.|+|.-......+.+..-.|..++      .+-.++..--...+|..+-..+.+++.+.
T Consensus       133 -----~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  133 -----SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             -----HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence                 2356889999999999987777888899999998765      66777776666677776655556666543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.66  E-value=0.0022  Score=61.12  Aligned_cols=136  Identities=15%  Similarity=0.017  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH-HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHH
Q 022513           54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV-FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLY  132 (296)
Q Consensus        54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (296)
                      +...++..+...+..|+.|-++|+ -|+||.++. ...+..+....+.+..                 .+++....+..+
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~-----------------~~~~~~~~~l~i  134 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVS-----------------PGQWWLALVLFI  134 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhC-----------------cchHHHHHHHHH
Confidence            345666777788888899999999 587776554 4444555555544431                 122333333333


Q ss_pred             HHHHcCcCcccchhhhhcccCCCCChhhhhh---------------------hhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513          133 LYSLGCGGNRGTLPALGAGQFDENDPKGAKA---------------------LASYFNFYLFATTLAAMIGVTAIVYVFI  191 (296)
Q Consensus       133 l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~---------------------r~~~~~~~~~~~~~G~~i~~~~~~~l~~  191 (296)
                      +..++.+.......+++.|..++++.. +..                     |++..+.-+...++|+.+...+.-.+..
T Consensus       135 ia~v~~~~~~vfyna~LP~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~  213 (477)
T PF11700_consen  135 IANVGYEASNVFYNAYLPDLARPEPRV-RAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVI  213 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHhhcCCChhh-hhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566666777788898988866420 000                     1555555555677787776544332211


Q ss_pred             --------ccchhHHHHHHHHHHHH
Q 022513          192 --------DQGWWLGFLISSVATLI  208 (296)
Q Consensus       192 --------~~gw~~~f~i~~~~~~~  208 (296)
                              ...-|.++.+.++..++
T Consensus       214 ~~~~~~~~~~~~r~~~~~~a~ww~v  238 (477)
T PF11700_consen  214 SPGSTASNTWAIRVAFLIVALWWLV  238 (477)
T ss_pred             cCCCccccchhhhHHHHHHHHHHHH
Confidence                    12346677766665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.57  E-value=0.0021  Score=51.69  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHH
Q 022513           56 TLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYS  135 (296)
Q Consensus        56 ~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  135 (296)
                      ..++......+..+++..+-++ +|.|++++++.+.+.+-......    +                +...++.+-++.|
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~----~----------------~~~~l~~~s~l~G  100 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY----P----------------NSYTLYPASALLG  100 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh----h----------------hHHHHHHHHHHHh
Confidence            3444455566677778888898 89999999999887754333221    1                3467888889999


Q ss_pred             HcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022513          136 LGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV  183 (296)
Q Consensus       136 ~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~  183 (296)
                      +|.+..+.....++.+...+++      +++..+.+....+.+..+|.
T Consensus       101 ~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~  142 (156)
T PF05978_consen  101 FGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGN  142 (156)
T ss_pred             hhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999998765432      45555555444444444443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR01272 gluP glucose/galactose transporter

Probab=97.47  E-value=0.00033  Score=62.89  Aligned_cols=81  Identities=11%  Similarity=-0.003  Sum_probs=64.8

Q ss_pred             chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc---------
Q 022513          122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID---------  192 (296)
Q Consensus       122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~---------  192 (296)
                      .++..++++.+++|.|.+..++..++++++..++++      +.+..++.+....+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            467889999999999999999999999999988654      45667788888999999999998866521         


Q ss_pred             -------cchhHHHHHHHHHHHH
Q 022513          193 -------QGWWLGFLISSVATLI  208 (296)
Q Consensus       193 -------~gw~~~f~i~~~~~~~  208 (296)
                             ..|+++|++.+++.++
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~  104 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAV  104 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Confidence                   3688888865554433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.47  E-value=0.0055  Score=56.82  Aligned_cols=151  Identities=11%  Similarity=0.066  Sum_probs=88.7

Q ss_pred             HHhHHHHhhhh-cCCChhhHHHH-HHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513           35 GISMVLYFKNE-MHFDIAGASNT-LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (296)
Q Consensus        35 ~~~l~~yl~~~-l~~s~~~a~~~-~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~  112 (296)
                      -+++..|+.+. .|++..+...- .-++.-......++...++|. +|.|++++++.+..++...++....         
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------   92 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence            36778899887 89998887643 335555666777888999999 8999999998888777766665543         


Q ss_pred             CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc--
Q 022513          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF--  190 (296)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~--  190 (296)
                                +...+-+.-+.-|++.+. ..+..+++=-..|+++      -.+..+....+.-+|..++.+++-.+.  
T Consensus        93 ----------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~  155 (412)
T PF01770_consen   93 ----------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSF  155 (412)
T ss_pred             ----------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      334555566666666553 3344444444443221      122223333344444444444333222  


Q ss_pred             cccchhHHHHHHHHHHHHHHHH
Q 022513          191 IDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       191 ~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      +..++.....+......+++++
T Consensus       156 ~~~sy~~L~~isl~~~~~a~~~  177 (412)
T PF01770_consen  156 GGVSYFQLNYISLASVSLALLI  177 (412)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHH
Confidence            2344555656665555444443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.45  E-value=0.00065  Score=64.27  Aligned_cols=155  Identities=8%  Similarity=-0.074  Sum_probs=106.3

Q ss_pred             hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513           34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (296)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~  113 (296)
                      +.++|--+++ +.+-.+.-.+.......++-.+.-++.+++-.+ +|+-+++..+++...+=.+..+...          
T Consensus       390 v~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~----------  457 (618)
T KOG3762|consen  390 VFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQ----------  457 (618)
T ss_pred             HHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhc----------
Confidence            4445544443 445444444543444455666777888999999 7999999888877665544443332          


Q ss_pred             CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH-HHHHHHHHHHHhhhhhhccc
Q 022513          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-FATTLAAMIGVTAIVYVFID  192 (296)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~  192 (296)
                               +.++.+..-++.|+..+.++.++.+|+++..|++-      +.+.-++.+ ..-.+|-.+|.++++.+.+.
T Consensus       458 ---------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~  522 (618)
T KOG3762|consen  458 ---------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVER  522 (618)
T ss_pred             ---------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence                     34566666789999999999999999999999765      344444443 23456666777788888888


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh
Q 022513          193 QGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       193 ~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      ++-+..|.+.++..++.++.+..
T Consensus       523 fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  523 FGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887777666655543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.41  E-value=0.00086  Score=66.19  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhcCc--hhHHHHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLS--RFATCLVFGTLE   92 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~G--Rr~~i~~~~~~~   92 (296)
                      ..+...+..++....++++..++|.|+++++|+++.+++.+.+...+ +..++.+++|++.|| ++  .|+.+.++.++.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHHHH
Confidence            44556667778888889999999999999999999999988887665 567899999999999 67  456777777666


Q ss_pred             HHHHHH
Q 022513           93 VLSLVM   98 (296)
Q Consensus        93 ~ig~~~   98 (296)
                      +++.+.
T Consensus       410 ~~~~~~  415 (633)
T TIGR00805       410 TLSYLL  415 (633)
T ss_pred             HHHHHH
Confidence            666544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.35  E-value=0.0035  Score=58.22  Aligned_cols=119  Identities=15%  Similarity=0.056  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh-HHHHHHHHHHHHHHHHH
Q 022513           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF-ATCLVFGTLEVLSLVML   99 (296)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr-~~i~~~~~~~~ig~~~~   99 (296)
                      +......-..+|++.+.+..- ...-|.+...+|.+.....+++.++.++.|.++|| .... +++.+......++...+
T Consensus       272 ~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk-tk~fk~~~~v~~~~~~v~~~~l  349 (480)
T KOG2563|consen  272 AICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADK-TKKFKLTTLVLYLFALVGTLML  349 (480)
T ss_pred             HHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence            333333344445554444322 23456777788888888889999999999999999 4554 45555555555553222


Q ss_pred             HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhccc-CCCC
Q 022513          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQ-FDEN  156 (296)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~-~~~~  156 (296)
                      ......+               ...+.++....+.|+..-+..|.-..+..|. ||..
T Consensus       350 ~~~t~~~---------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~  392 (480)
T KOG2563|consen  350 LTCTLFL---------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA  392 (480)
T ss_pred             HHhhccC---------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC
Confidence            2221111               1223445555566666666777777777776 5543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.19  E-value=0.00038  Score=64.56  Aligned_cols=166  Identities=17%  Similarity=0.086  Sum_probs=105.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHHHHH-HHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATCLV-FGT   90 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~i~~-~~~   90 (296)
                      +.++.+..+.+...+++--=..++++|+ +.+|.+..-.+.+-.+.-+...+.+++.|..+||+   +||||-++. +..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            4455555555555555433346677776 46788877666665566667788899999999973   698886654 444


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCC-CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGK-SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~  169 (296)
                      ...++.++...+..+...   -|.+ ..|...-....++++..+.=+..-..+.+.-++++|+...+++++   |  ..+
T Consensus       111 ~i~~~l~Lig~aaDig~~---lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~---~--Ans  182 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLL---LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT---R--ANS  182 (498)
T ss_pred             HHHHHHhhhhhHhhhhHH---hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---c--cch
Confidence            555666655554322111   1111 112223345666777777777777788899999999987654322   2  556


Q ss_pred             HHHHHHHHHHHHHHhhhhhh
Q 022513          170 FYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       170 ~~~~~~~~G~~i~~~~~~~l  189 (296)
                      ++-+.+.+|+.+|+..++|.
T Consensus       183 ~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hHHHHHHhcceeeeeccccc
Confidence            66678899999888777654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.18  E-value=0.016  Score=55.77  Aligned_cols=104  Identities=9%  Similarity=-0.034  Sum_probs=67.8

Q ss_pred             HHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcc
Q 022513           63 STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNR  142 (296)
Q Consensus        63 ~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~  142 (296)
                      .........+..-|+ +|||.....+..+..++.++.......                .......+...+..++.+...
T Consensus       362 ~~~p~~~~~~~~~~~-~gR~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~  424 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPE-FGRRPPLFLSLFLAGIGLLLFGWLPDD----------------LGGWLHWILPLLGKFFIGSAF  424 (521)
T ss_pred             HHhhHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHhhcc----------------chhHHHHHHHHHHHHHHHHHH
Confidence            344455566899999 799999999999888887776655311                110112222222333333344


Q ss_pred             cchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513          143 GTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       143 ~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  189 (296)
                      .....+.+|++|+..      |....+.......+|+.++|.+....
T Consensus       425 ~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~  465 (521)
T KOG0255|consen  425 NLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLL  465 (521)
T ss_pred             HHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455788899999765      67777777778888988888766444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.13  E-value=0.022  Score=54.44  Aligned_cols=140  Identities=9%  Similarity=-0.066  Sum_probs=89.5

Q ss_pred             HHhHHhHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh-H------HHHHHHHHHHHHHHHH
Q 022513           32 IANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF-A------TCLVFGTLEVLSLVML   99 (296)
Q Consensus        32 ~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr-~------~i~~~~~~~~ig~~~~   99 (296)
                      ....+.+..|.++.     +|++ -..++..++..+...+..|+.+++=.| .+|| |      -+.+|.++..++.+.+
T Consensus       285 ~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~~~Kfa~g~~~~g~~f~~l  362 (493)
T PRK15462        285 QQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRIWGKFALGLGLMSAGFCIL  362 (493)
T ss_pred             HHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            33445555666553     2322 124556666666666667777777666 4332 1      2667788888887777


Q ss_pred             HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH-HHHH
Q 022513          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA-TTLA  178 (296)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~-~~~G  178 (296)
                      ..+......+          ...+..++++..++.++|.-...|...+++++..|++-      ++..++.+++. ..+|
T Consensus       363 ~~~~~~~~~~----------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~------~g~~mg~w~l~~~~~~  426 (493)
T PRK15462        363 TLSARWSAMY----------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV------TGVLTGIYMLLSGAIA  426 (493)
T ss_pred             HHHHhhcCCC----------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH------HHHHHHHHHHHHHHHH
Confidence            6654211100          11345667778888999999999999999999999654      78888887764 3677


Q ss_pred             HHHHHhhhhhh
Q 022513          179 AMIGVTAIVYV  189 (296)
Q Consensus       179 ~~i~~~~~~~l  189 (296)
                      ..++..+.+..
T Consensus       427 ~~~~g~~~~~~  437 (493)
T PRK15462        427 NYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHh
Confidence            77766665544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.12  E-value=0.0072  Score=43.20  Aligned_cols=65  Identities=9%  Similarity=0.015  Sum_probs=55.6

Q ss_pred             HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHh
Q 022513           38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA  103 (296)
Q Consensus        38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~  103 (296)
                      +.+.++++.++|.++++++-+...++..+|.+...++.++ ..+++.+..+.++..+..+.+....
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456889999999999999999999999999999999998 5778888888888887777666543

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=96.86  E-value=0.074  Score=51.33  Aligned_cols=55  Identities=4%  Similarity=-0.114  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh
Q 022513           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT   77 (296)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr   77 (296)
                      ..++..++.-+......-.+...+|-+..+.+.+++++.++..+|..++++++++
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3334343333333344444555678888888999999999999999998888755

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.83  E-value=0.03  Score=51.78  Aligned_cols=127  Identities=17%  Similarity=0.018  Sum_probs=79.1

Q ss_pred             hHHhHHHHhhhhcCC---Chhh----HHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-HHHHHHHHHHHHHHHHHHHhhc
Q 022513           34 NGISMVLYFKNEMHF---DIAG----ASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVFGTLEVLSLVMLTIQAYS  105 (296)
Q Consensus        34 ~~~~l~~yl~~~l~~---s~~~----a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-~i~~~~~~~~ig~~~~~~~~~~  105 (296)
                      ++...|.|+++..+-   ++.+    .+...++..+..++..|+-|-++|+ .|+|| .+.+..++.++.+..++.... 
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~-  111 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPP-  111 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence            445678888876544   4332    2344556666777788888999999 58655 455556666666666555421 


Q ss_pred             cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022513          106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV  183 (296)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~  183 (296)
                                     ...+....+...+..++.........+++.+..++++.+    |.+..  -+-..++|+.+.-
T Consensus       112 ---------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~l--g~~~gylgs~i~l  168 (438)
T COG2270         112 ---------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGL--GWALGYLGSVILL  168 (438)
T ss_pred             ---------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----ccccc--ccccccccchHHH
Confidence                           123445555566777888888888899999988765421    33333  2334566665543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.0009  Score=58.21  Aligned_cols=93  Identities=16%  Similarity=0.174  Sum_probs=63.8

Q ss_pred             HHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcC
Q 022513           40 LYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL  119 (296)
Q Consensus        40 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  119 (296)
                      .|+-+.+++...+.+.+..+..+...+...+.|-++|+ .|||+.....++.+++..+    .-.               
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsCi----TKh---------------  120 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSCI----TKH---------------  120 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHHH----hhc---------------
Confidence            45566788888887766555555566666777889999 7999987777777665432    111               


Q ss_pred             CcchHHHHHHHHHHHHHcCcCcccchhh-hhcccC
Q 022513          120 KGAIAAYFYGSLYLYSLGCGGNRGTLPA-LGAGQF  153 (296)
Q Consensus       120 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~e~~  153 (296)
                       +.++-.+++||++-|+..+...++.-+ +++|.-
T Consensus       121 -SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  121 -SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             -CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence             234567899999999988776655544 345543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.65  E-value=0.18  Score=48.05  Aligned_cols=163  Identities=12%  Similarity=0.023  Sum_probs=86.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCC-----hhhHHHHHHHHHHHHHH-HHhHHHHHhhhcCchhHHH
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFD-----IAGASNTLTNFFGSTFL-LCLVGGFISDTYLSRFATC   85 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-----~~~a~~~~~~~~~~~~~-~~l~~G~laDr~~GRr~~i   85 (296)
                      .-+|.++......++-.+.|+.+.     -+++.+..+     .+...++-....+.+.+ ..++-+++++| ++|++.+
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf   77 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALF   77 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhH
Confidence            345556666666667666665443     245565553     23444444433333333 37788999999 7999987


Q ss_pred             HHHHHHHHHHHHHHHHHhhccC---CCCC-CCCCC--CcCC----------cchHHHHHHHHHHHHHcCcCccc-chhhh
Q 022513           86 LVFGTLEVLSLVMLTIQAYSKS---LHPP-DCGKS--SCLK----------GAIAAYFYGSLYLYSLGCGGNRG-TLPAL  148 (296)
Q Consensus        86 ~~~~~~~~ig~~~~~~~~~~~~---~~~~-~~~~~--~~~~----------~~~~~~~~~~~~l~g~g~g~~~~-~~~~~  148 (296)
                      .+....++.-.+++.... .|.   .+|. .|.+.  .-+.          .-....+++..=+.+   ....+ ..-.+
T Consensus        78 ~~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~---~~vvS~lFW~f  153 (472)
T TIGR00769        78 YTVISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG---SVVLSLLFWGF  153 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            765555544444433321 111   1110 00000  0000          000112222211111   11122 44577


Q ss_pred             hcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 022513          149 GAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (296)
Q Consensus       149 ~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~  190 (296)
                      ..|.+..++      ..+++..+..+.|+|..+++.+..++.
T Consensus       154 andi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       154 ANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889887543      468889999999999999998887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.48  E-value=0.023  Score=53.93  Aligned_cols=152  Identities=13%  Similarity=0.087  Sum_probs=106.9

Q ss_pred             cCCchhHHHHHHHHHHHHHHHH-HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHH-HHhhhcCchhHHHHHH
Q 022513           11 KGGFRACTFVFVLSALENMGFI-ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGG-FISDTYLSRFATCLVF   88 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G-~laDr~~GRr~~i~~~   88 (296)
                      .++.|..+.+....+.....-. +....+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++..|
T Consensus       236 ~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lG  314 (463)
T KOG2816|consen  236 VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLG  314 (463)
T ss_pred             cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHH
Confidence            3444555555554444333322 2332556788889999999999888888888888888887 55666 8999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (296)
Q Consensus        89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~  168 (296)
                      +....++..+..++.                   +.++.+.+.++.++. +...+...++.+-+.+.++      +|..+
T Consensus       315 l~~~~~~~~~~af~~-------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~  368 (463)
T KOG2816|consen  315 LLSEFLQLLLFAFAT-------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVF  368 (463)
T ss_pred             HHHHHHHHHHHHHhc-------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchh
Confidence            998888888877764                   224555555554443 4456777787877777655      78888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhh
Q 022513          169 NFYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       169 ~~~~~~~~~G~~i~~~~~~~l  189 (296)
                      ++......+.+.++|.+-+.+
T Consensus       369 ~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  369 GIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             hHHHHHHHHhhhhhHHHHHHH
Confidence            888888888888887775544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.43  E-value=0.032  Score=51.09  Aligned_cols=151  Identities=15%  Similarity=0.101  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHH-HHHHHHHH
Q 022513           16 ACTFVFVLSALENMGFIANGISMVLYF-KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC-LVFGTLEV   93 (296)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i-~~~~~~~~   93 (296)
                      .++..+....+.....|....+...++ .+.+|+++.+.+.+.+...+.+.+.++.-++..||+.|.-+.. ..+...+.
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            344444444333333334444444444 5689999999998888777777777888888888854443333 33333333


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      -..++...+.                   ....++.+..+-.+..+...++...++....|.++      ||+..+....
T Consensus       341 P~~llls~~~-------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~S  395 (451)
T KOG2615|consen  341 PAFLLLSLAR-------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRS  395 (451)
T ss_pred             HHHHHHhccc-------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHH
Confidence            2222222221                   22567788888888888888888888888888665      7888888888


Q ss_pred             HHHHHHHHHHhhhhhhcc
Q 022513          174 ATTLAAMIGVTAIVYVFI  191 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~  191 (296)
                      ...++-.+||++.|.+..
T Consensus       396 l~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  396 LGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHhhhhhhheeEE
Confidence            889999999999876643

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.34  E-value=0.17  Score=47.67  Aligned_cols=137  Identities=10%  Similarity=0.001  Sum_probs=96.8

Q ss_pred             HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (296)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~  112 (296)
                      +.-..+..|+... |+++...+..-+...+....++.+..++-+| +|-.|+=.++.....+...+...+...+...   
T Consensus       276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~---  350 (432)
T PF06963_consen  276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSP---  350 (432)
T ss_pred             cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCC---
Confidence            3445677888776 9999999988888888899999999999999 7999998888877665555544433222110   


Q ss_pred             CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 022513          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI  186 (296)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  186 (296)
                           . ...+...++.+.++.=+|.=++--+..-++-|..|+++      |+...+.-....++...+...++
T Consensus       351 -----~-~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  351 -----F-SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             -----c-hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                 0 12245566667666667766677777777888777554      78888877777777777765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.03  E-value=0.0017  Score=62.84  Aligned_cols=170  Identities=11%  Similarity=0.080  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhc-CchhHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTY-LSRFATCLVFGTLEVL   94 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~-~GRr~~i~~~~~~~~i   94 (296)
                      ..+..+....+.....|..+++|-|++++|++++.+++.+.+...+ +..+|.++||++..|+ ++.|+.+....+..++
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV  386 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence            3344456667788888999999999999999999999988887655 6678999999999984 3445555555444444


Q ss_pred             HHHHHHH-----HhhccC--CCC---------------CCCC-----------CCCcCCc--chHHHHHHHHHHHHHcCc
Q 022513           95 SLVMLTI-----QAYSKS--LHP---------------PDCG-----------KSSCLKG--AIAAYFYGSLYLYSLGCG  139 (296)
Q Consensus        95 g~~~~~~-----~~~~~~--~~~---------------~~~~-----------~~~~~~~--~~~~~~~~~~~l~g~g~g  139 (296)
                      +.+....     ....+.  ...               ..|.           .+.|+..  .....+++..++..+..+
T Consensus       387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~  466 (539)
T PF03137_consen  387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF  466 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence            3332111     110000  000               1221           1123333  223445555455444444


Q ss_pred             CcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhccc
Q 022513          140 GNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA-TTLAAMIGVTAIVYVFID  192 (296)
Q Consensus       140 ~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~~~~~l~~~  192 (296)
                      ..........-...++++      |.-+.++.... --+|..-||++.|++.|.
T Consensus       467 ~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  467 MSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ------------------------------------------------------
T ss_pred             hcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            444444444445566544      55565655433 456667788888887775

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.83  E-value=0.0065  Score=57.69  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           30 GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      .+-.+.+.++.|.. ++|+++.+.+.+++.--+..+++.|++|++|||| -++|.+++++.+..+.
T Consensus        26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~   89 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVT   89 (618)
T ss_pred             cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHH
Confidence            33356678888875 7999999999999999999999999999999995 6666555555554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.61  E-value=0.13  Score=48.29  Aligned_cols=132  Identities=14%  Similarity=0.006  Sum_probs=67.3

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh----HHHHHHHHHHHHH---HHHHHHHhhccCCCCCCCCCCC
Q 022513           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF----ATCLVFGTLEVLS---LVMLTIQAYSKSLHPPDCGKSS  117 (296)
Q Consensus        45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr----~~i~~~~~~~~ig---~~~~~~~~~~~~~~~~~~~~~~  117 (296)
                      -.|.+..+..+...+..+++.+|.++||.++|+ +-|.    .+..+..+....|   .+.+....  +...     .+ 
T Consensus       277 ~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~-~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~--~~~~-----~~-  347 (493)
T KOG1330|consen  277 LIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK-LSRIFPNSGTLRASQLSAALGAPLSIPFLFLF--PAFT-----SS-  347 (493)
T ss_pred             HhCCccccchhhhhHHHhhchhhheehHHHHHH-HHHhcccccchhHHHHHHhhhhhHHHHHHHHH--Hhhh-----hH-
Confidence            345566666677778889999999999999999 3321    2233333332222   22221111  1000     00 


Q ss_pred             cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH-HHHHHHHHhhhhhhccc-cch
Q 022513          118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT-TLAAMIGVTAIVYVFID-QGW  195 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~-~~G~~i~~~~~~~l~~~-~gw  195 (296)
                       .....+.+++++..+...    .++.......|..|++.      |.+.+++..... .+|..-+|.+.+.+.++ .+|
T Consensus       348 -s~~~~~il~~~g~~~~~~----~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~  416 (493)
T KOG1330|consen  348 -SMIFGLILFLVGETISWF----NWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVGILSDKLRGY  416 (493)
T ss_pred             -HHHHHHHHHHHHHHHHhc----ccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceehhHHHHhhCC
Confidence             000112222233222222    23333445567777654      778888766443 44555556577777665 355


Q ss_pred             h
Q 022513          196 W  196 (296)
Q Consensus       196 ~  196 (296)
                      +
T Consensus       417 ~  417 (493)
T KOG1330|consen  417 K  417 (493)
T ss_pred             C
Confidence            4

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.95  E-value=1.5  Score=41.29  Aligned_cols=76  Identities=12%  Similarity=-0.095  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      .+.+....++.+++-=+.....+.|+.+-+.-+---.+..-..-.+...+..+..|..-|| .-|.+++..+.++.-
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn   79 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQN   79 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHH
Confidence            3445555666666554444555677766543332222322333345556667777888999 699998887765543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.57  E-value=0.17  Score=50.37  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhc-CchhHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTY-LSRFATCLVFGTLEVL   94 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~-~GRr~~i~~~~~~~~i   94 (296)
                      ....++...++...+.|..+++|-|++++++.++..+..+++...+ +..+|..++|++.-|+ +.-|.+..+..+..++
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            3445567788889999999999999999999999999988876655 4567899999999984 3445554444444433


Q ss_pred             H
Q 022513           95 S   95 (296)
Q Consensus        95 g   95 (296)
                      .
T Consensus       474 ~  474 (735)
T KOG3626|consen  474 S  474 (735)
T ss_pred             H
Confidence            3

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=93.49  E-value=1.3  Score=40.84  Aligned_cols=158  Identities=13%  Similarity=0.052  Sum_probs=81.4

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhh-----hcCchhHH
Q 022513           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD-----TYLSRFAT   84 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD-----r~~GRr~~   84 (296)
                      .|+.++.+..+++....+..- +|.....| ++-+.-|.|-++.+....++  --+-.-++++++-|     | +||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP-~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIP-LLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCc-hhHhhhhH-HHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccc
Confidence            345667788888888888776 56766444 44445577766655432221  12334568888999     8 899997


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhh
Q 022513           85 CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL  164 (296)
Q Consensus        85 i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r  164 (296)
                      -++-+ -+.+|.++..++-..+....   ++.+   ..+...+....++.-++.+..-.++-.+.-.+..+++      .
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~~~g---~ng~---~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------l  167 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDRGLG---GNGG---LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------L  167 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCcccc---cCCC---CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------c
Confidence            65432 23455555555432111100   0111   1112222223344455555444444444444443222      3


Q ss_pred             hhhHHHHHHHHHHHHHHHHhh
Q 022513          165 ASYFNFYLFATTLAAMIGVTA  185 (296)
Q Consensus       165 ~~~~~~~~~~~~~G~~i~~~~  185 (296)
                      +-+......+.+.|.+++..+
T Consensus       168 gyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  168 GYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             CchhHHHHHHHhhhHHhhcce
Confidence            333333445667777776544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=93.38  E-value=1.8  Score=41.14  Aligned_cols=146  Identities=11%  Similarity=-0.101  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhcCchh---H----HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHH
Q 022513           54 SNTLTNFFGSTFLLCLVGGFISDTYLSRF---A----TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY  126 (296)
Q Consensus        54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr---~----~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (296)
                      ++..+...+...+..++..++--+ +||+   +    -+.++.++...+.+++..... ....+        .+..+..+
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~-~~~~~--------~~~~s~~~  396 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAGI-WFGGP--------SGLVSVWW  396 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH-hhcCC--------CCCcCHHH
Confidence            344444445555556666666555 3444   1    345556666666555554411 11100        01245678


Q ss_pred             HHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh------hccccchhHHHH
Q 022513          127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY------VFIDQGWWLGFL  200 (296)
Q Consensus       127 ~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~------l~~~~gw~~~f~  200 (296)
                      ++.+.+++++|.=...|.-.++++...|+.-      .+..++.+.+....|..++..+.+.      ..+.......|+
T Consensus       397 lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~  470 (498)
T COG3104         397 LVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFG  470 (498)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHH
Confidence            8888999999998888988898888888532      5667777777777777777665552      112223345566


Q ss_pred             HHHHHHHHHHHHHHh
Q 022513          201 ISSVATLIGLIALAI  215 (296)
Q Consensus       201 i~~~~~~~~~i~~~~  215 (296)
                      ..+...++..+..+.
T Consensus       471 ~~g~v~i~~~~~~~~  485 (498)
T COG3104         471 TIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555544433333333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.94  E-value=2.5  Score=40.06  Aligned_cols=79  Identities=13%  Similarity=0.003  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHH
Q 022513           57 LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL  136 (296)
Q Consensus        57 ~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  136 (296)
                      ..+......+..++++.+-|. +|.|+.+.+++..+..-.+.+...                    +-..++.+-.+.|+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~--------------------N~y~~yfssallG~  114 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP--------------------NSYYLYFSSALLGF  114 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc--------------------chHHHHHHHHHhhh
Confidence            444555667788899999999 899999999998877654443332                    12568888899999


Q ss_pred             cCcCcccchhhhhcccCCCC
Q 022513          137 GCGGNRGTLPALGAGQFDEN  156 (296)
Q Consensus       137 g~g~~~~~~~~~~~e~~~~~  156 (296)
                      |.+..+...-.+++|....+
T Consensus       115 Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen  115 GAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             hHHheecccceehhhcCChh
Confidence            99999998889998877644

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=91.53  E-value=4.3  Score=40.46  Aligned_cols=166  Identities=13%  Similarity=-0.023  Sum_probs=110.6

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHH
Q 022513           47 HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY  126 (296)
Q Consensus        47 ~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (296)
                      +...........++.....+..+.....+|-.-|+...+..-++.++++.+...+... ...          +.......
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a~----------~~~~~~~~   84 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GAI----------PSSGHPLH   84 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccC----------cccccchH
Confidence            3344456777888899999999999999999767777888877778877777665542 110          01122334


Q ss_pred             HHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc-hhH------HH
Q 022513          127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG-WWL------GF  199 (296)
Q Consensus       127 ~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g-w~~------~f  199 (296)
                      ..++...+.++.++..++.+.+.+++++..   +...+.+..+++++..+.+... .+++..+..... +..      .|
T Consensus        85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        85 DLLDLLGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCcch
Confidence            456667788889999999999999998743   3444567889999888877764 566666654432 321      23


Q ss_pred             H-HHHHHHHHHHHHHHhcCCceeecCCCC
Q 022513          200 L-ISSVATLIGLIALAIGKPFYRIQQPGE  227 (296)
Q Consensus       200 ~-i~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (296)
                      . ..++.+++.++.++.....+...++++
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~  189 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKP  189 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            3 444555555666666666555555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.99  E-value=1.9  Score=38.14  Aligned_cols=138  Identities=11%  Similarity=0.073  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhcCchhH---HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHH
Q 022513           54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFA---TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS  130 (296)
Q Consensus        54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~---~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (296)
                      +.+.+.+++...+|.-+...+..|  .|.+   .+.+..++..+...+..+..+   ..|         +..+...-+++
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP---------~kes~~~s~i~  350 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTSS---VSP---------SKESPSESLIG  350 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHhc---cCC---------CcCCchHHHHH
Confidence            667777888888888777777776  2333   344444443333332222221   111         12233444667


Q ss_pred             HHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc-cccchhHHHHHHHHHHHHH
Q 022513          131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF-IDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       131 ~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-~~~gw~~~f~i~~~~~~~~  209 (296)
                      ..+.-.+.|.++|.+.-+=+...|++.      |.+.++++..-.|+..-++-... -.. ...+-|..|.++.+.+.++
T Consensus       351 F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynl-h~~~~p~~tr~mf~icS~~~~~a  423 (454)
T KOG4332|consen  351 FCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNL-HVDAFPTTTRNMFGICSAFLFVA  423 (454)
T ss_pred             HHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheec-ccccCccccchhhhhhHHHHHHH
Confidence            777778889999999887777777544      78888887766665543321110 011 1245678899988877766


Q ss_pred             HHH
Q 022513          210 LIA  212 (296)
Q Consensus       210 ~i~  212 (296)
                      .+.
T Consensus       424 ~i~  426 (454)
T KOG4332|consen  424 SIL  426 (454)
T ss_pred             HHH
Confidence            543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=90.69  E-value=1.5  Score=40.73  Aligned_cols=74  Identities=15%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCc
Q 022513           60 FFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCG  139 (296)
Q Consensus        60 ~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g  139 (296)
                      -.+-..+.-+++-+.-+| +..+.=+.+..++..+|.++.+++.                   +.+.-++|.++.+++.|
T Consensus        68 di~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~-------------------~v~~~l~Gv~las~ssg  127 (402)
T PF02487_consen   68 DILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSP-------------------SVWVRLLGVVLASLSSG  127 (402)
T ss_pred             HHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeecc-------------------chhHHHHHHHHHhhhhh
Confidence            334455556677788888 5544434455666777776655432                   34566788889999988


Q ss_pred             CcccchhhhhcccCC
Q 022513          140 GNRGTLPALGAGQFD  154 (296)
Q Consensus       140 ~~~~~~~~~~~e~~~  154 (296)
                      .......++.+ .++
T Consensus       128 ~GE~tfL~lt~-~y~  141 (402)
T PF02487_consen  128 LGEVTFLSLTH-FYG  141 (402)
T ss_pred             hhHHHHHHHHH-hcC
Confidence            88877777644 455

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.34  E-value=12  Score=35.63  Aligned_cols=91  Identities=11%  Similarity=0.009  Sum_probs=56.6

Q ss_pred             HHHHHHHhHHHHHhhh--cCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC---CcCCcchHHHHHHHHHHHHH
Q 022513           62 GSTFLLCLVGGFISDT--YLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS---SCLKGAIAAYFYGSLYLYSL  136 (296)
Q Consensus        62 ~~~~~~~l~~G~laDr--~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~  136 (296)
                      .+..++.+..+.+++|  .+||++++.++..+..++.++..+..  |...|  ...+   .-....+.....+.-++.|+
T Consensus       290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap--~~~t~~~~~~~~~~~~~~~ii~~l~G~  365 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAP--LRPTDSPPLLFTPSYYLALIIGFLLGF  365 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCC--CCCCcccccccccchhHHHHHHHHHhh
Confidence            3445556666677654  16999999999999888877665542  21111  0000   00012233344445567888


Q ss_pred             cCcCcccchhhhhcccCCCC
Q 022513          137 GCGGNRGTLPALGAGQFDEN  156 (296)
Q Consensus       137 g~g~~~~~~~~~~~e~~~~~  156 (296)
                      +-+.........+++.+|++
T Consensus       366 ~D~~~~t~~~~ii~~~~~~~  385 (461)
T KOG3098|consen  366 GDACFNTQRYVIIALLYPDD  385 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCc
Confidence            88888899999999999643

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=89.69  E-value=0.79  Score=43.63  Aligned_cols=190  Identities=14%  Similarity=0.082  Sum_probs=97.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHH-HHhHHHHHhhhcCch---hHHHHH
Q 022513           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFL-LCLVGGFISDTYLSR---FATCLV   87 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~-~~l~~G~laDr~~GR---r~~i~~   87 (296)
                      .|+.++.++...+...+.+..+.+-.+......++++.+++....+.... .+.+ ..+...+..-| +|+   |+.+..
T Consensus       260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~-l~~i~~r~~~~~  338 (488)
T KOG2325|consen  260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTR-LGKIDKRRIILL  338 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHH-hhhhccceeeee
Confidence            45666666666677777766656656666666778877766554443322 2222 22233333333 333   444444


Q ss_pred             HHHHHHHHHHHHHHH-hhcc-CCCC-----CCCCC---CCcCCcc--hHHHHHHH-HHHHHHcCcCcccchhhhhcccCC
Q 022513           88 FGTLEVLSLVMLTIQ-AYSK-SLHP-----PDCGK---SSCLKGA--IAAYFYGS-LYLYSLGCGGNRGTLPALGAGQFD  154 (296)
Q Consensus        88 ~~~~~~ig~~~~~~~-~~~~-~~~~-----~~~~~---~~~~~~~--~~~~~~~~-~~l~g~g~g~~~~~~~~~~~e~~~  154 (296)
                      ++.+......+.... ...+ ..+.     ..|..   +-|....  +...++.+ -++.|.+.-.......++-+|+..
T Consensus       339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLg  418 (488)
T KOG2325|consen  339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILG  418 (488)
T ss_pred             hHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhC
Confidence            433332222221111 0000 0000     11111   1244432  22333333 234555555566677788889888


Q ss_pred             CCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513          155 ENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (296)
Q Consensus       155 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~  209 (296)
                      +.+      .+...+++.....++-.+||++...+....|.++.+.+.....++.
T Consensus       419 p~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  419 PRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             Ccc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            765      3444445555677888888888877777777776665555444433

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=89.51  E-value=5.8  Score=35.95  Aligned_cols=115  Identities=6%  Similarity=-0.099  Sum_probs=67.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (296)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~   91 (296)
                      +.-|.++.+...-+. .+..|.-..++......++|..+.  +.+    ........++.+.+-.+ +|-|+++.++...
T Consensus        26 ~~~knv~i~s~~fl~-~f~a~~gl~nlq~~vn~~lg~~sl--~~~----y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~   97 (390)
T KOG3097|consen   26 GILKNVLILSIAFLL-TFTAYLGLQNLQTSVNYDLGTVSL--GAL----YLSLIDSSMFMPLLIRF-LGTKWTMVLAVFP   97 (390)
T ss_pred             chhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhcCcccchh--hhh----hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence            344666655544444 444455556777666554443322  111    12223334444456666 8999999988777


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCC
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD  154 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~  154 (296)
                      +..-...    +..                ..+..++-+-...|+|.+..++..-+|++++-.
T Consensus        98 Y~lyiA~----Nl~----------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   98 YALYIAA----NLE----------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHh----hcc----------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            6543221    111                134456666678899999999888888887655

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=87.35  E-value=25  Score=32.80  Aligned_cols=31  Identities=19%  Similarity=0.091  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHcCcCcccchhhhhcccCCC
Q 022513          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE  155 (296)
Q Consensus       124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~  155 (296)
                      ....++..++.+++.|..+..+....++ +|.
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~  147 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPS  147 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhc-CCH
Confidence            3444555667788888888888876666 553

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=85.88  E-value=11  Score=35.10  Aligned_cols=61  Identities=7%  Similarity=-0.081  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513          123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (296)
Q Consensus       123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  189 (296)
                      +.+..++..+..|+..|....+....+.|..++++      |.-..+....+-++|..+|.+++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34555566777888889888999888888766433      45555555566677777766655444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=84.27  E-value=1.7  Score=40.86  Aligned_cols=131  Identities=12%  Similarity=-0.011  Sum_probs=64.2

Q ss_pred             hhcC---CChhhHHHHHHHHHHHHHHHHhHHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcC
Q 022513           44 NEMH---FDIAGASNTLTNFFGSTFLLCLVGG-FISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL  119 (296)
Q Consensus        44 ~~l~---~s~~~a~~~~~~~~~~~~~~~l~~G-~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  119 (296)
                      +..+   +|+...+.+..+..++..++..+.. ++.|+  .-|+++..+.++..+..+.......-....   .|-    
T Consensus       245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~--~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~---~Gi----  315 (433)
T PF03092_consen  245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW--SWRRIFVVTTLVSVLASLFDLLLVTRWNLD---LGI----  315 (433)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcccEEEEEEEeee---eCc----
Confidence            3455   7777666655555555555554443 34443  556666666555444332211110000000   000    


Q ss_pred             CcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513          120 KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (296)
Q Consensus       120 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  191 (296)
                       +.. ...+.--++..+..+...-+...+.+|+.|+..      -++.+++.....|+|..++..++..+.+
T Consensus       316 -~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~  379 (433)
T PF03092_consen  316 -PDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLME  379 (433)
T ss_pred             -CCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000 111111122333333333444567889999765      3677777777778888777777666543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=83.17  E-value=16  Score=26.93  Aligned_cols=41  Identities=17%  Similarity=0.143  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      +.......++..+++.+.+++.|. .|.+..+.+...+.+++
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        90 GLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHH
Confidence            444555667788888999999998 68777766655554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
2xut_A	524	Proton/peptide symporter family protein; transport	7e-29
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	5e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	4e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  114 bits (287), Expect = 7e-29
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 31/230 (13%)

Query: 15  RACTFVFVLSALENMGFIANGIS--MVLYFKNEMHFDI------AGASNTLTNFFGSTFL 66
           R   ++    A E   F   G+   +  +    +   I      A A +   +F    + 
Sbjct: 12  RQIPYIIASEACERFSFY--GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYF 69

Query: 67  LCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY 126
             L+GG+I+D +  ++ T L    +  +    L I  +S                     
Sbjct: 70  FPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG------------------ 111

Query: 127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
           FY  L+L +LG GG +  + +    QFD+++          F+ + F     +     ++
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSM 168

Query: 187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQV 236
             +  + G  + F I  V   +  +   +G+  Y    P          V
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV 218

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 28/211 (13%)

Query: 15  RACTFVFVLSALENMGFIANGISMVLYF-----KNEMHFDIAGASNTLTNFFGSTFLLCL 69
              + +F+    E   +      ++ Y        ++H   A A++ +  +    +L   
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 70  VGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129
           +GGF++D  +         G L +L  ++L +        P             A+  +G
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--------PFG-----------ASALFG 113

Query: 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189
           S+ L  +G G  +  +  L    +DE+D +      + F+ ++F   L A I    +   
Sbjct: 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAA 169

Query: 190 FIDQGWWLGFLISSVATLIGLIALAIGKPFY 220
               G+ + F ++++   IGL+    G    
Sbjct: 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 38  MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS--RFATCLVFGTLEVLS 95
              Y K   HF +  +S     +  +     L+ G++SD      R AT + F TL  ++
Sbjct: 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334

Query: 96  LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE 155
            ++  +              +      +         +Y  G     G      A     
Sbjct: 335 TIVYWMNP------------AGNPTVDMICMIVIGFLIY--GPVMLIGLHALELA----- 375

Query: 156 NDPKGAKALAS-YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA 214
             PK A   A+ +     F     ++     + Y     GW  GF++    +++ +I L 
Sbjct: 376 --PKKAAGTAAGFTGL--FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431

Query: 215 I 215
           +
Sbjct: 432 V 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.76
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.72
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.69
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.66
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.55
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.47
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.37
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.31
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.3
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.25
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.96
2xut_A	524	Proton/peptide symporter family protein; transport	98.23

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=2.8e-20  Score=174.38  Aligned_cols=189  Identities=20%  Similarity=0.322  Sum_probs=160.7

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH
Q 022513            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA   83 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~   83 (296)
                      ..++++|.++.+....+++++++|++..+++.|++++     +|++..+.+++.+.+.++..++.+++|+++||++|||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A            7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            3445788888888999999999999999999999988     99999999999999999999999999999999339999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513           84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (296)
Q Consensus        84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~  163 (296)
                      ++.++.++..++.+++..+.                   +...++++|++.|+|.|...++..++++|.+|++++    +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~  143 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----R  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----H
T ss_pred             HHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----c
Confidence            99999999998887765432                   346788999999999999999999999999997652    2


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513          164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY  220 (296)
Q Consensus       164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~  220 (296)
                      |+..+++++.+.++|..++|.+++++.++.||++.|++.++..+++.++++...+++
T Consensus       144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4aps_A          144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT  200 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            678888889999999999999999999889999999998777666665555444443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=1.5e-19  Score=170.85  Aligned_cols=194  Identities=19%  Similarity=0.349  Sum_probs=158.4

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcC------CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-chhH
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH------FDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFA   83 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GRr~   83 (296)
                      ++++|.++.+.+..++.++++|++..+++.|+++++|      ++..+++++.+.+.++..++.+++|+++|| + |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~   86 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN   86 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence            4456777788888999999999999999999999999      999999999999999999999999999999 7 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513           84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (296)
Q Consensus        84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~  163 (296)
                      ++.++.++..++.+++..+.                  .+...++++|++.|++.|...++..++++|.+|+++   |..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~  145 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSL  145 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTH
T ss_pred             HHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHH
Confidence            99999999888887766542                  135678899999999999999999999999999765   222


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeecCCC
Q 022513          164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPG  226 (296)
Q Consensus       164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~  226 (296)
                      +.+.+++++...++|..++|.+++++.+..+|++.|++.+++.+++.+.++...+++..++|+
T Consensus       146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (524)
T 2xut_A          146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPE  208 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            356667788899999999999999998888999999988887776666655555554433333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.76  E-value=4.9e-17  Score=149.70  Aligned_cols=177  Identities=14%  Similarity=0.048  Sum_probs=141.2

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~   90 (296)
                      +++++.+..+....+...+..... ..+.+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence            345555555555556666655444 444455788999999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (296)
Q Consensus        91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~  170 (296)
                      +..++.+++.....                ..+...++++|++.|+|.|...+...++++|.+|+++      |+...++
T Consensus       100 ~~~~~~~~~~~~~~----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~  157 (438)
T 3o7q_A          100 LYALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNL  157 (438)
T ss_dssp             HHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHH
T ss_pred             HHHHHHHHHHhccc----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHH
Confidence            99999887743221                1246789999999999999999999999999999765      7788889


Q ss_pred             HHHHHHHHHHHHHhhhhhhc-cccc-------------------------hhHHHHHHHHHHHHHHH
Q 022513          171 YLFATTLAAMIGVTAIVYVF-IDQG-------------------------WWLGFLISSVATLIGLI  211 (296)
Q Consensus       171 ~~~~~~~G~~i~~~~~~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~i  211 (296)
                      ++...++|..+++.+++++. +..+                         |++.|.+.++..++..+
T Consensus       158 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  224 (438)
T 3o7q_A          158 AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVAL  224 (438)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887 4443                         89999776665544433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.72  E-value=1.5e-17  Score=153.66  Aligned_cols=172  Identities=9%  Similarity=0.019  Sum_probs=139.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      |+.++......+......+.....++. +.+++ .+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence            344444455555555554444455554 55667 999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHH----HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513           94 LSLVMLTI----QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (296)
Q Consensus        94 ig~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~  169 (296)
                      ++.+++.+    +.                   +...++++|++.|++.|...+...++++|.+|+++      |++.++
T Consensus       104 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~  158 (451)
T 1pw4_A          104 AVMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS  158 (451)
T ss_dssp             HHHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred             HHHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence            99888776    42                   24578899999999999999999999999998654      788889


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHH
Q 022513          170 FYLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       170 ~~~~~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~  213 (296)
                      +++.+.++|..++|.+++++.+..+ |++.|++.+++.++..++.
T Consensus       159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~  203 (451)
T 1pw4_A          159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA  203 (451)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998878788 9999998877665544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.69  E-value=1.4e-16  Score=144.07  Aligned_cols=166  Identities=11%  Similarity=0.080  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513           19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM   98 (296)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~   98 (296)
                      .+....++...........++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence            3444555556655555555555 567899999999999999999999999999999999 79999999999999998887


Q ss_pred             HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (296)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G  178 (296)
                      ...+.                   +...++++|++.|++.+...+...+++.|.+|+++      |++.++.++...++|
T Consensus        82 ~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g  136 (375)
T 2gfp_A           82 AVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVS  136 (375)
T ss_dssp             HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHH
T ss_pred             HHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHH
Confidence            77653                   45678899999999999999999999999998655      788888999999999


Q ss_pred             HHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513          179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (296)
Q Consensus       179 ~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i  211 (296)
                      ..++|.+++++.+..+|++.|.+.++..++..+
T Consensus       137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          137 PLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999998888999999887776655444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.66  E-value=8.5e-16  Score=143.70  Aligned_cols=176  Identities=13%  Similarity=0.095  Sum_probs=123.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHH
Q 022513           50 IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG  129 (296)
Q Consensus        50 ~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (296)
                      +...+++++.+.++..+|++++|+++|| +|||+++.++.+++.++.++.+++......... ...-...-..+...+++
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-~~~~~~~~a~~~~~l~~  131 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINP-DNTVPVYLAGYVPEFVI  131 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-SSSCCGGGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-hhHHHHHHhhhHHHHHH
Confidence            3456778888999999999999999999 799999999999999998887753210000000 00000001235788999


Q ss_pred             HHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------ccchhHHHHH
Q 022513          130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI--------DQGWWLGFLI  201 (296)
Q Consensus       130 ~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~--------~~gw~~~f~i  201 (296)
                      +|++.|+|.|+..+..+.+++|..|++.      |+...++++.+..+|..+++.+...+..        ...|+..+.+
T Consensus       132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (491)
T 4gc0_A          132 YRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFAS  205 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhh
Confidence            9999999999999999999999999654      7788888888888888888766554432        2356766665


Q ss_pred             HHHHHHH--HHHHHHhcCCceeecCCCCChhhhh
Q 022513          202 SSVATLI--GLIALAIGKPFYRIQQPGESPLVRV  233 (296)
Q Consensus       202 ~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~  233 (296)
                      ..+..++  ....+.+++|+|...+.+.++..+.
T Consensus       206 ~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~  239 (491)
T 4gc0_A          206 ECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI  239 (491)
T ss_dssp             THHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred             hhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence            5443333  3334567889988877664433333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.55  E-value=9.1e-14  Score=128.10  Aligned_cols=177  Identities=12%  Similarity=0.073  Sum_probs=142.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC--chhHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATCLVFGTLE   92 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~--GRr~~i~~~~~~~   92 (296)
                      |.++...+..++....++++..+++.|+++.+|++..+++...+...++..++.+++|+++|| +  |||+.+.++..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            556677777788888888899999999999899999999999999999999999999999999 8  9999888777665


Q ss_pred             H-HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           93 V-LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        93 ~-ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      . ++.+++...   +              ..+...+.+..++.|++.+...+....+..|.+|++.      |++.++.+
T Consensus       331 ~~~~~~~~~~~---~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~  387 (451)
T 1pw4_A          331 VTIATIVYWMN---P--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  387 (451)
T ss_dssp             HHHHHHHTTSC---C--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred             HHHHHHHHHHh---c--------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence            5 444332211   1              1134556667778888888888888899999998654      78999999


Q ss_pred             HHHHHH-HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          172 LFATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       172 ~~~~~~-G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      +...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus       388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999 99999999999999889999998887776666554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.47  E-value=1.9e-12  Score=118.95  Aligned_cols=168  Identities=14%  Similarity=0.052  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHH-hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLY-FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      |.++......++.....+++..+++.| +++.+|++..+++.......++..++.+++|+++|| +|||+++.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence            445666666677777778888999999 888889999999999999999999999999999999 799999999888887


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      ++.++.....                   +.. .....++.+++.+...+...++..|.+|++       ++...++.. 
T Consensus       337 ~~~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-  388 (438)
T 3o7q_A          337 ALCLISAFAG-------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-  388 (438)
T ss_dssp             HHHHHHHHCC-------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred             HHHHHHHHcC-------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence            7766554432                   112 233447788888888888899988988843       223333333 


Q ss_pred             HHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLI  211 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i  211 (296)
                      ...+|+.++|.+.+++.+..| ++..|.+.+++.++..+
T Consensus       389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            567999999999999999888 89888877665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.37  E-value=2.3e-12  Score=118.54  Aligned_cols=165  Identities=10%  Similarity=-0.036  Sum_probs=112.5

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhcCCC---hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513           25 ALENMGFIANGISMVLYFKNEMHFD---IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI  101 (296)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~  101 (296)
                      +.....++....+++.|+.+.++..   ....+...++..++..++.+++|+++|| +|||+++..+.++..++.+++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~  308 (417)
T 2cfq_A          230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445566788887666532   3344555566666778889999999999 79999998887777666444322


Q ss_pred             HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH-HHHHHHHHHH
Q 022513          102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YLFATTLAAM  180 (296)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~  180 (296)
                      .                   .+...+++..++.+++.+...+....+.+|.+|++.      |++.+++ ++....+|+.
T Consensus       309 ~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~  363 (417)
T 2cfq_A          309 A-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMI  363 (417)
T ss_dssp             C-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHH
T ss_pred             h-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHH
Confidence            1                   122345555555666655555566788999998543      6777777 3566779999


Q ss_pred             HHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513          181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (296)
Q Consensus       181 i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~  215 (296)
                      ++|.+++++.+..|+...|.+.+++.+++.++.+.
T Consensus       364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988888888888877776666554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.31  E-value=2.3e-13  Score=125.31  Aligned_cols=171  Identities=9%  Similarity=-0.041  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |..+.+....++...++....++++.|+++++|+++.+.+++.+.+.++..++++++|+++|| +|||+++.++..+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence            345555555566666666777899999999999999999999999999999999999999999 7999999988877654


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +...+......+.               ....+..++.+.+++.|...+...+...+..++.    .++++..++..+..
T Consensus        86 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~  146 (417)
T 2cfq_A           86 MFAPFFIFIFGPL---------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRARMF  146 (417)
T ss_dssp             CHHHHHHHTHHHH---------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHHHSSS
T ss_pred             HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHHHHHH
Confidence            3221111000000               0001223444444444443333333333333211    11245555555566


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT  206 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~  206 (296)
                      .++|..++|.+++++.+ .+|+..|++.++..
T Consensus       147 ~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          147 GCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             TTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            78899999999888876 47898888665543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.30  E-value=2.2e-11  Score=113.69  Aligned_cols=184  Identities=9%  Similarity=-0.043  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH-----HHHHH
Q 022513           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-----VFGTL   91 (296)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~-----~~~~~   91 (296)
                      .+.+....++....+.....+++.|+++.++.+..+.+.......++..++.++.|++.|| +|||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence            3334444455555556667788889998888886677777778888888899999999999 79986544     66666


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (296)
Q Consensus        92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~  171 (296)
                      ..++.+++.........          +...+...+.+..++.|++.+...+...++..|.+|++.      |++..+++
T Consensus       364 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  427 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGT----------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW  427 (491)
T ss_dssp             HHHHHTTTHHHHHHCCC----------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred             HHHHHHHHHHHHHhcCC----------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence            66665554443211000          001234566677788899999888999999999999776      78888888


Q ss_pred             HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (296)
Q Consensus       172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  218 (296)
                      +...++|..+++.+.+++.+. ++...|.+.+++.+++.++.+...+
T Consensus       428 ~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          428 FLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888654 5666777766666555554444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.25  E-value=6.3e-10  Score=103.69  Aligned_cols=182  Identities=10%  Similarity=-0.044  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHH-HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513           17 CTFVFVLSALENM-GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (296)
Q Consensus        17 ~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig   95 (296)
                      ........++..+ +.+.+..+ .+++.+..+.+............+...++.++++++.|| +|||+.++.+.....++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYY-APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG  355 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHH-HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhc-chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence            3333333333333 33444333 344556677777777666667778888999999999999 79999999988888877


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~  175 (296)
                      .+.+.......             ............+..+++.+ ..+....+.+|.||++.      |++..++.+...
T Consensus       356 ~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~  415 (491)
T 4gc0_A          356 MFSLGTAFYTQ-------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI------RGKALAIAVAAQ  415 (491)
T ss_dssp             HHHHHHHHHTT-------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT------HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH------HHHHHHHHHHHH
Confidence            76655443211             01111222222222333333 33566789999999876      788888888888


Q ss_pred             HHHHHHHHhhhhhhccc------cchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513          176 TLAAMIGVTAIVYVFID------QGWWLGFLISSVATLIGLIALAIGKPFY  220 (296)
Q Consensus       176 ~~G~~i~~~~~~~l~~~------~gw~~~f~i~~~~~~~~~i~~~~~~~~~  220 (296)
                      .+|+.+++.+.+.+.+.      .++...|++.+++.+++.+..+...|+.
T Consensus       416 ~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          416 WLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            88888888776665432      3445567776666666665555555554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.96  E-value=1e-10  Score=105.40  Aligned_cols=165  Identities=9%  Similarity=-0.059  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH-HH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL-EV   93 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~-~~   93 (296)
                      |..+......++.....++...+++.|+++.+|.+..+++.......++..++.++.++++|| +||+  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence            445556666677777778888889999998899999999999998899999999999999999 6872  2233322 22


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      .+......... .              ..+...+++..++.+++.+...+...++..|.+| ++      |++..+.++.
T Consensus       276 ~~~~~~~~~~~-~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~  333 (375)
T 2gfp_A          276 AGLLMWIPDWF-G--------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGG  333 (375)
T ss_dssp             TSSSSSHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHH
T ss_pred             HHHHHHHHhhh-c--------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHH
Confidence            22221111110 0              1134456667788889999899999999999886 22      7888898888


Q ss_pred             HHHHHHHHHHhhhhhhccccchhHHHHHHHH
Q 022513          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSV  204 (296)
Q Consensus       174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~  204 (296)
                      ..++|..+++.+.+++.+..++...+.+.+.
T Consensus       334 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          334 LQNIGSGVLASLSAMLPQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            9999999999998888777777777665433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.23  E-value=4.8e-07  Score=84.89  Aligned_cols=90  Identities=12%  Similarity=0.014  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--ch------
Q 022513          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ--GW------  195 (296)
Q Consensus       124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~--gw------  195 (296)
                      ...+.+..++.|++.+...+...++..|.+|++.      |++..++++...++|+.++|.+.+++.+..  +|      
T Consensus       405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~  478 (524)
T 2xut_A          405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM  478 (524)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            4556677888999988888999999999999765      788889988899999999999998887632  23      


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHhcCCc
Q 022513          196 ---WLGFLISSVATLIGLIALAIGKPF  219 (296)
Q Consensus       196 ---~~~f~i~~~~~~~~~i~~~~~~~~  219 (296)
                         +..|++.+++.+++.++++...++
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (524)
T 2xut_A          479 SVTAFQMFFFAGFAILAAIVFALYARS  505 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence               223555555555555544443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.7
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.48
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.41
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.33

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=5.9e-17  Score=146.58  Aligned_cols=155  Identities=10%  Similarity=0.057  Sum_probs=126.2

Q ss_pred             HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (296)
Q Consensus        36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  115 (296)
                      ..+.++++ ++|+|.++.+++.+++.++..++.+++|+++|| +|||+++.++.++..++.+++.......         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            44456665 589999999999999999999999999999999 7999999999999988887776543211         


Q ss_pred             CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-cc
Q 022513          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID-QG  194 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~g  194 (296)
                            .+...+++.|++.|++.|...+...++++|.+|+++      |++.+++++.+.++|..+++.+.+.+... .+
T Consensus       114 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  181 (447)
T d1pw4a_         114 ------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  181 (447)
T ss_dssp             ------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             ------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence                  234678899999999999999999999999998654      78888888889999999998887766554 47


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 022513          195 WWLGFLISSVATLIGLIAL  213 (296)
Q Consensus       195 w~~~f~i~~~~~~~~~i~~  213 (296)
                      |++.|.+.+++.++..++.
T Consensus       182 w~~~~~~~~~~~~~~~~~~  200 (447)
T d1pw4a_         182 WHAALYMPAFCAILVALFA  200 (447)
T ss_dssp             STTCTHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHHH
Confidence            8988887766655444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2e-13  Score=120.22  Aligned_cols=171  Identities=9%  Similarity=-0.045  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i   94 (296)
                      |..|.+....++..+++....+.++.|+++++|+|.++.+++.+++.++..++.++.|+++|| +||||+++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            456777777777777776677889999999999999999999999999999999999999999 6999999998888887


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (296)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  174 (296)
                      +.++.......+               ......+..+.+.+.+.+...........+..++    ...++....+.....
T Consensus        86 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  146 (417)
T d1pv7a_          86 MFAPFFIFIFGP---------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK----VSRRSNFEFGRARMF  146 (417)
T ss_dssp             THHHHHHHTHHH---------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH----HHHHHSCCHHHHHHH
T ss_pred             HHHHHHHhhhhh---------------hHHHHHHHHHHHhhhcccccccchhhcccccccc----hhhhhHHHHHHHhhh
Confidence            776666543211               0111223333333333333333333222222221    111234444555566


Q ss_pred             HHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT  206 (296)
Q Consensus       175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~  206 (296)
                      ...+..+++.+++.+.+. +|+..+.......
T Consensus       147 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~  177 (417)
T d1pv7a_         147 GCVGWALGASIVGIMFTI-NNQFVFWLGSGCA  177 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             hccccccccccccccccc-cccccccchhhHH
Confidence            777788888888777654 3444444444333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.5e-12  Score=117.12  Aligned_cols=178  Identities=11%  Similarity=0.015  Sum_probs=130.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (296)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~   93 (296)
                      .+.++......++.....++...+++.|+.+.++.+..+.+.......++..++.+++|+++|| ++|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHH
Confidence            3556666667777788888899999999999999999999999999999999999999999999 688765444333332


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (296)
Q Consensus        94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~  173 (296)
                      +..+........+              ..+.....+..++.|++.++..+....+..|.+|++.      |++..++.+.
T Consensus       327 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~  386 (447)
T d1pw4a_         327 LVTIATIVYWMNP--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGL  386 (447)
T ss_dssp             HHHHHHHHTTSCC--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence            2222222111101              1234556666777888888888888899999998654      7888888777


Q ss_pred             HHHH-HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513          174 ATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (296)
Q Consensus       174 ~~~~-G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~  212 (296)
                      ..++ |..++|.+.+++.++.||+..|.+.+++.+++.++
T Consensus       387 ~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            7776 45668889999999999998888766655554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.5e-12  Score=114.59  Aligned_cols=145  Identities=11%  Similarity=-0.047  Sum_probs=112.5

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchH
Q 022513           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA  124 (296)
Q Consensus        45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (296)
                      ..+.+....+.......++..++..+.+++.|| +|||+++.++.++..++.+.+....                   +.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~  312 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT-------------------SA  312 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC-------------------CH
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc-------------------cc
Confidence            334445556666777778888899999999999 7999999998888877766554321                   34


Q ss_pred             HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH-HHHHHHHHHHHhhhhhhccccchhHHHHHHH
Q 022513          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-FATTLAAMIGVTAIVYVFIDQGWWLGFLISS  203 (296)
Q Consensus       125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~  203 (296)
                      ..+++..++.|++.+...+...+++.|.+|++.      |++.++..+ ....+|..++|.+.+++.++.|++..|.+.+
T Consensus       313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~  386 (417)
T d1pv7a_         313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            567777788899999889999999999999654      678777654 4567899999999999999999999998877


Q ss_pred             HHHHHHHHHHHh
Q 022513          204 VATLIGLIALAI  215 (296)
Q Consensus       204 ~~~~~~~i~~~~  215 (296)
                      ++.++..++..+
T Consensus       387 ~~~~~~~~~~~~  398 (417)
T d1pv7a_         387 LVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            766555444433