Citrus Sinensis ID: 022553

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MNQLVSSSSGAKYREQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEERGARVKKQINEIRIVECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDPPPLPDSH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHccccccccEEEEcccccccccccccHHHHcccccccccccccccccccccccccccccccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEEEEcccccccccEEEEEEEEcccccccccccccccHHHHHEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHcccccccccccccccccccccccccccccHHHHccccccccccc
Coil and Loop (DISEMBL)
mnqlvssssgakyreqrsttttvvkpscsgtkVIRVSVtdgdatesssdedeERGARVKKQINEIRIVecsksneiscSESVKQRMkdrsiplkkrvggrsydnkyrgvrmrpwgkwaaeIRDPFQRTRVWLGTFETAEEAALVYDQAAIrlkgphaqtnflrppqtdqtfdfvtsgydsekesqsqtptsaipsptsvlrfhsNEEIELAKTELfnlesdrccpsqdsfqiydselldsatpapiffddkmcVPLLKEnlgdvsvdlggdfdscisewdvdnyfqdppplpdsh
Flexible Loop (DISEMBL)
mnqlvssssgakyreqrsttttvvkpscsgtkvirvsvtdgdatesssdedeergarvkkqineirivecsksneiscsesvkqrmkdrsiplkkrvggrsydnkyrgvrmrpwgkwaaeirdpFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHaqtnflrppqtdQTFDFVTSGYDSEkesqsqtptsaipsptsVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDppplpdsh
Low Complexity Region (SEG)
MNQLVSSSSGAKYREQRSTTTTVVKPSCSGTKVIRVSVtdgdatesssdedeergarVKKQINEIRIVECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDPPPLPDSH
Disordered region (IsUnstruct)
*****************************************************************RIV*********************************YDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF**********************************************IELAKTELFNLESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYF**********
Disordered Region (DISOPRED)
***********************************VSVTDGDATE***************QINE********************************************VRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTN***********************************************************************************APIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQD**PL****
Disordered Region (DISEMBL)
**************************SCSGTKVIRVSVT******************VKKQINEIRIVECSKSNE*************RSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTS******************SPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDPPPLPDSH
Disordered Region (DISPRO)
********SGAKYREQRSTTTTVVKPSCSGTKVIRVSVTDGD***********RGARVKKQINEIRIVE*********************************DNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRP*******************************************************************************APIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDP*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQLVSSSSGAKYREQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEERGARVKKQINEIRIVECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDPPPLPDSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
O82339	294	Ethylene-responsive trans	yes	no	0.850	0.853	0.418	2e-37
Q9M374	315	Ethylene-responsive trans	no	no	0.779	0.730	0.404	5e-35
Q9SUE3	335	Ethylene-responsive trans	no	no	0.654	0.576	0.447	1e-33
Q9SUQ2	343	Ethylene-responsive trans	no	no	0.911	0.784	0.326	2e-29
O82503	287	Ethylene-responsive trans	no	no	0.528	0.543	0.416	1e-27
Q9FK12	354	Ethylene-responsive trans	no	no	0.505	0.420	0.491	2e-25
Q9C995	161	Ethylene-responsive trans	no	no	0.450	0.826	0.467	3e-24
O04682	248	Pathogenesis-related gene	N/A	no	0.4	0.475	0.5	3e-21
O22259	171	Ethylene-responsive trans	no	no	0.413	0.713	0.428	1e-19
Q9LYU3	212	Ethylene-responsive trans	no	no	0.244	0.339	0.613	2e-19

>sp|O82339|CRF5_ARATH Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=1 SV=1

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/308 (41%), Positives = 170/308 (55%), Gaps = 57/308 (18%)

Query: 11  AKYREQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEER---GARVKKQINEIRI 67
           +KY   R  T+T   P     K++++ VTD  AT+SSSDE+ +      RVK+ ++EIR 
Sbjct: 8   SKYTVHRKITST---PFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDEIRF 64

Query: 68  VECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDN--KYRGVRMRPWGKWAAEIRDPF 125
             C + +E   +   K++    +       GG    +  KYRGVR RPWGK+AAEIRDP 
Sbjct: 65  --CDEDDEPKPARKAKKKSPAAA----AENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPS 118

Query: 126 QRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQT--------FDFVT-S 176
            RTR+WLGTF TAEEAA+ YD+AAIR+KG +AQTNFL PP +  T         D  T S
Sbjct: 119 SRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETVS 178

Query: 177 GYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCP----SQDSFQI 232
           G DS +ESQ      ++ SPTSVLRF  N+E E  +TE    ++    P    S D F  
Sbjct: 179 GCDSARESQ-----ISLCSPTSVLRFSHNDETEY-RTEPTEEQNPFFLPDLFRSGDYF-- 230

Query: 233 YDSELLDSATPAPIFFDD--KMCVPLLKE---------NLGDVSVDLG--GDFDSCISEW 279
           +DSE+    TP P+F D+  +  +P +           NL D S  LG  GDF    S W
Sbjct: 231 WDSEI----TPDPLFLDEFHQSLLPNINNNNTVCDKDTNLSD-SFPLGVIGDF----SSW 281

Query: 280 DVDNYFQD 287
           DVD +FQD
Sbjct: 282 DVDEFFQD 289

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M374|CRF6_ARATH Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=1 SV=1

 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 139/252 (55%), Gaps = 22/252 (8%)

Query: 11  AKYREQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEERGA----RVKKQINEIR 66
            K+ E R+ T     PS    +++R++VTD  AT+SSSD+D+        RVK+ + EIR
Sbjct: 8   VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query: 67  IVECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQ 126
              C   +  S +    +  ++ S+ ++  V       KYRGVR RPWGK+AAEIRDP  
Sbjct: 68  F--CQGESSSSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSS 125

Query: 127 RTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVT-SGYDSEKESQ 185
           RTR+WLGTF TAEEAA+ YD+AAI LKGP A TNFL PP      D  T S  D  ++S+
Sbjct: 126 RTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPVIDLQTVSACDYGRDSR 185

Query: 186 SQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIYDSELLDSATPAP 245
                 ++ SPTSVLRF+ NEE E        +E+    P + S  I + E     + A 
Sbjct: 186 -----QSLHSPTSVLRFNVNEETE------HEIEAIELSPERKSTVIKEEE----ESSAG 230

Query: 246 IFFDDKMCVPLL 257
           + F D   +P L
Sbjct: 231 LVFPDPYLLPDL 242

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/208 (44%), Positives = 123/208 (59%), Gaps = 15/208 (7%)

Query: 11  AKYREQRSTTTTVVKPSC--------SGTKVIRVSVTDGDATESSSDEDEERGAR--VKK 60
            KY E ++      K S            +++RVS+TD DAT+SSSDE+E    R  VK+
Sbjct: 12  VKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVKR 71

Query: 61  QINEIRIVECSKSN-EISCSESV-KQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWA 118
            INEIR+   S S  ++S S +  ++R+   S   K  V G++   KYRGVR RPWGKWA
Sbjct: 72  LINEIRVEPSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQN-QKKYRGVRQRPWGKWA 130

Query: 119 AEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTD--QTFDFVTS 176
           AEIRDP QR R+WLGTF TAEEAA+VYD AAI+L+GP A TNF   P+ +  Q  +    
Sbjct: 131 AEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPE 190

Query: 177 GYDSEKESQSQTPTSAIPSPTSVLRFHS 204
              S   S+S   +  + SPTSVL + +
Sbjct: 191 SNMSVSISESMDDSQHLSSPTSVLNYQT 218

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ2|CRF2_ARATH Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 162/325 (49%), Gaps = 56/325 (17%)

Query: 12  KYREQRSTTTTVVK--PSCSGTKVIRVSVTDGDATESSSDEDE-------ERGARVKKQI 62
           K+ E ++ TTT+V    +   T+++R+SVTD DAT+SSSD++E        +  RVKK +
Sbjct: 13  KFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFV 72

Query: 63  NEIRIVECSKSNEISCSESVKQRMKDRSI-------PLKKRVGGRSYDNKYRGVRMRPWG 115
           NE+ + +       SC +   ++ + R++       P+       + + K+RGVR RPWG
Sbjct: 73  NEVYL-DSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWG 131

Query: 116 KWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQT-------- 167
           KWAAEIRDP +R R+WLGT+ TAEEAA+VYD AAI+L+GP A TNF   P T        
Sbjct: 132 KWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAPP 191

Query: 168 -------DQTFDFVTSGYDSEKESQSQTPTSAIPSPTSVLR--FHSNEEIELAKTELFNL 218
                   +  +       +       +    + SP SVLR  F  +E   ++ + +  +
Sbjct: 192 PSPVKKKKKKNNKSKKSVTASSSISRSSSNDCLCSPVSVLRSPFAVDEFSGISSSPVAAV 251

Query: 219 ESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKM------CVP------LLKENL--GDV 264
                   + S         D +  AP+F DD +       VP      L  E+L   D+
Sbjct: 252 ----VVKEEPSMTTVSETFSDFS--APLFSDDDVFDFRSSVVPDYLGGDLFGEDLFTADM 305

Query: 265 SVDL--GGDFDSCISEWDVDNYFQD 287
             D+  G DF S +S W ++++FQD
Sbjct: 306 CTDMNFGFDFGSGLSSWHMEDHFQD 330

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 29/185 (15%)

Query: 32  KVIRVSVTDGDATESSSDEDEE--------RGARVKKQINEIRIVECSKSNEISCSESVK 83
           +++R+SVTD  AT+SSSDE+EE        +  RVKK + E+ +       E    +  K
Sbjct: 11  RILRISVTDPYATDSSSDEEEEVDFDALSTKRRRVKKYVKEVVLDSVVSDKEKPMKKKRK 70

Query: 84  QRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAAL 143
           +R+    + +           K+RGVR RPWGKWAAEIRDP +R RVWLGTF+TAEEAA+
Sbjct: 71  KRVVTVPVVVTTAT------RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAI 124

Query: 144 VYDQAAIRLKGPHAQTNFLRPPQTDQ----------TFDFVTSGYDSEKESQSQTPTSAI 193
           VYD AAI+L+GP+A+ NF  PP T+             DF+  G +  +     +P S +
Sbjct: 125 VYDNAAIQLRGPNAELNFPPPPVTENVEEASTEVKGVSDFIIGGGECLR-----SPVSVL 179

Query: 194 PSPTS 198
            SP S
Sbjct: 180 ESPFS 184

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 104/171 (60%), Gaps = 22/171 (12%)

Query: 12  KYREQRSTTTTVVKPS---CSGTKVIR---VSVTDGDATESSSDEDEERGA----RVKKQ 61
           KY E +++ T   K S    SG K ++   +  TD DAT+SSSDEDEE       RVK+ 
Sbjct: 11  KYTEHKTSMTKYTKKSSEKLSGGKSLKKVSICYTDPDATDSSSDEDEEDFLFPRRRVKRF 70

Query: 62  INEIRIVECSKSNEIS-CSESVKQRMKDRSIPLKKRVGGRSYDN----------KYRGVR 110
           +NEI  VE S +N ++  S   ++R+   S   +     R   N          K+RGVR
Sbjct: 71  VNEI-TVEPSCNNVVTGVSMKDRKRLSSSSDETQSPASSRQRPNNKVSVSGQIKKFRGVR 129

Query: 111 MRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
            RPWGKWAAEIRDP QR R+WLGTFETAEEAA+VYD AAIRL+GP A TNF
Sbjct: 130 QRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C995|ERF70_ARATH Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=1 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 91/154 (59%), Gaps = 21/154 (13%)

Query: 32  KVIRVSVTDGDATESSSDED-EERGA------RVKKQINEIRIVECSKSNEIS-CSESVK 83
           ++IR+S TD +AT+SSSDED EERG       R K+ + EI I     ++++  C    K
Sbjct: 3   RIIRISFTDAEATDSSSDEDTEERGGASQTRRRGKRLVKEIVIDPSDSADKLDVCKTRFK 62

Query: 84  QRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRD-----PFQRTRVWLGTFETA 138
            R+    +   K       + KYRGVR RPWGKW AEIR        +R R+WLGTF TA
Sbjct: 63  IRIPAEFLKTAK------TEKKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTA 116

Query: 139 EEAALVYDQAAIRLKGPHAQTNFLRPP--QTDQT 170
           EEAAL YD A+I+L GPHA TNF  P   Q D+T
Sbjct: 117 EEAALAYDNASIKLIGPHAPTNFGLPAENQEDKT 150

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 86/130 (66%), Gaps = 12/130 (9%)

Query: 32  KVIRVSVTDGDATESSSDEDEERGARVKKQINEIRIVECSKSNEISCSESVKQRMKDRSI 91
           +V+R+ +TD DAT+SS DE      RVK+ + EI ++  +KS        +  R K RS+
Sbjct: 36  RVVRIILTDADATDSSDDEGRNTVRRVKRHVTEINLMPSTKS--------IGDR-KRRSV 86

Query: 92  PLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIR 151
                V  R    K+RGVR RPWG+WAAEIRDP +  RVWLGT++T EEAA+VYD+AA++
Sbjct: 87  SPDSDVTRRK---KFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVK 143

Query: 152 LKGPHAQTNF 161
           LKGP A TNF
Sbjct: 144 LKGPDAVTNF 153

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants.

Solanum lycopersicum (taxid: 4081)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 4/126 (3%)

Query: 81  SVKQRMKDRSIPL-KKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAE 139
           SV  R K + + + ++R G R   N YRG+R RPWGKWAAEIRDP +  RVWLGTF+TA+
Sbjct: 24  SVSSRKKRKPVSVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTAD 83

Query: 140 EAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTSGYDSE--KESQSQTPTSAIPSPT 197
           EAA  YD AAI+++G  A+ NF    Q ++  D    G  +E   E+Q ++ +  + +  
Sbjct: 84  EAARAYDVAAIKIRGRKAKLNFPN-TQVEEEADTKPGGNQNELISENQVESLSEDLMALE 142

Query: 198 SVLRFH 203
             +RF+
Sbjct: 143 DYMRFY 148

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 53/75 (70%), Gaps = 3/75 (4%)

Query: 106 YRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF---L 162
           YRGVR RPWGKWAAEIRDP +  RVWLGTFETAEEAAL YD+AA++ KG  A+ NF   +
Sbjct: 39  YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERV 98

Query: 163 RPPQTDQTFDFVTSG 177
           + P T  T      G
Sbjct: 99  QGPTTTTTISHAPRG 113

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
224064167	305	AP2/ERF domain-containing transcription	0.867	0.839	0.441	5e-55
224127850	297	AP2/ERF domain-containing transcription	0.874	0.868	0.433	1e-51
225454444	314	PREDICTED: ethylene-responsive transcrip	0.908	0.853	0.408	4e-46
307136351	276	AP2/ERF domain-containing transcription	0.840	0.898	0.448	4e-44
449432090	276	PREDICTED: ethylene-responsive transcrip	0.840	0.898	0.448	1e-43
356503125	283	PREDICTED: ethylene-responsive transcrip	0.840	0.876	0.418	7e-41
356504161	294	PREDICTED: ethylene-responsive transcrip	0.881	0.884	0.384	3e-39
356560648	274	PREDICTED: ethylene-responsive transcrip	0.840	0.905	0.393	1e-38
449464098	319	PREDICTED: ethylene-responsive transcrip	0.837	0.774	0.428	1e-38
292668903	353	AP2 domain class transcription factor [M	0.888	0.742	0.380	6e-38

>gi|224064167|ref|XP_002301396.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222843122|gb|EEE80669.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/317 (44%), Positives = 184/317 (58%), Gaps = 61/317 (19%)

Query: 12  KYREQRSTTTTVVK-PSCSGTKVIRVSVTDGDATESSSDEDEE---RGARVKKQINEIRI 67
           KY E ++ T  +VK      T+++R+SVTDG+AT+SS DE EE      RVKK INEIRI
Sbjct: 7   KYTEHKTVTNKLVKWEDSKATRIVRISVTDGNATDSSGDEKEESKRHHPRVKKHINEIRI 66

Query: 68  VECSK----------SNEISCSESVKQRMKDR-SIPLKKRVGGRSYDNKYRGVRMRPWGK 116
             C            S  +S  + VK+  +D+ S P     GG+    +YRGVR RPWG+
Sbjct: 67  TSCGSDRAAEDAKKSSKVVSRQQVVKKISRDQCSYP-----GGK----RYRGVRQRPWGR 117

Query: 117 WAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQT-----F 171
           WAAEIRDP++RTR+WLGT++TAEEAA+VYDQAAIR+KGP AQTNF +PP + Q       
Sbjct: 118 WAAEIRDPYRRTRLWLGTYDTAEEAAMVYDQAAIRIKGPDAQTNFTQPPVSKQHAPDVDI 177

Query: 172 DFVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEI--------------------ELA 211
           +   SGY+S KES      +++ SPTSVLRF S EE                     E+ 
Sbjct: 178 NVNISGYESGKESH-----NSLCSPTSVLRFQSTEEPGPESQVAVQSDCCWRIQTQEEVV 232

Query: 212 KTELFNLESDRCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVP--LLKENLGDVSVDLG 269
           + E+  +  D  C   D   +   E  D   PAPIFF++   VP  +L+E+  D+SV L 
Sbjct: 233 QEEIIKVGEDDECLVTDPLCL--KEFWDFENPAPIFFEE-CSVPDTVLREDYADISVHLD 289

Query: 270 GDFDSCISEWDVDNYFQ 286
           GDF SC+  WDVD YF+
Sbjct: 290 GDFGSCL--WDVDKYFE 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127850|ref|XP_002320179.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222860952|gb|EEE98494.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/307 (43%), Positives = 177/307 (57%), Gaps = 49/307 (15%)

Query: 12  KYREQRSTTTTVVK-PSCSGTKVIRVSVTDGDATESSSDEDEE---RGARVKKQINEIRI 67
           KY E ++ T  +V+      T+++R+SVTDG+AT+SS DE+EE   +  R+KK INEIR+
Sbjct: 7   KYTEHKTVTNKLVRWEDSKATRIVRISVTDGNATDSSGDENEEPKIQHPRIKKHINEIRM 66

Query: 68  VECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSY---DNKYRGVRMRPWGKWAAEIRDP 124
             CS        +S  Q++      +KK    + Y     KYRGVR RPWG+WAAEIRDP
Sbjct: 67  TNCSDREAEDAKKSPGQQV------VKKNSRDQYYYPEGKKYRGVRQRPWGRWAAEIRDP 120

Query: 125 FQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFL-----RPPQTDQTFDFVTSGYD 179
           ++RTRVWLGT++TAEEAA+VYDQAAIR+KGP AQTNF      +    D   +   SGYD
Sbjct: 121 YRRTRVWLGTYDTAEEAAMVYDQAAIRIKGPDAQTNFTNTLVSKQHTPDVDINVNISGYD 180

Query: 180 SEKESQSQTPTSAIPSPTSVLRFHSNEE------------------IELAKTELFNLESD 221
           S KES      +++ SPTSVLRFHS  E                   E+ + E+     D
Sbjct: 181 SGKESH-----NSLCSPTSVLRFHSTGEPGPESQAAVQSDCCWRQNQEVVQEEILKGGDD 235

Query: 222 RCCPSQDSFQIYDSELLDSATPAPIFFDDKMCVP--LLKENLGDVSVDLGGDFDSCISEW 279
            C    D   +   E  D  +PAPIFF++   VP  +L+E+  D+ V L  DF SC+  W
Sbjct: 236 ECL-VMDPLCL--KEFWDFESPAPIFFEE-CSVPGTVLREDYADMPVHLDCDFGSCL--W 289

Query: 280 DVDNYFQ 286
           DVD YF+
Sbjct: 290 DVDKYFE 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454444|ref|XP_002276577.1| PREDICTED: ethylene-responsive transcription factor CRF4 [Vitis vinifera]

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 189/328 (57%), Gaps = 60/328 (18%)

Query: 1   MNQLVSSSSGAKYREQRSTTTTVVK------PSCS--GTK-VIRVSVTDGDATESSSDED 51
           M+   ++S+  KY E RS T+ VVK        CS  GT+ VIR+SVTD DAT+S  +E+
Sbjct: 1   MDGKSTASTPVKYTEHRSVTSKVVKVPLGKEKRCSNGGTRRVIRISVTDADATDSDEEEE 60

Query: 52  EERGARVKKQINEIRIVECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRM 111
           E    RVKK +NEIR+VE +++  + C E+  +++ +RS    +  GG+    K+RGVR 
Sbjct: 61  EYCRVRVKKHVNEIRVVEATRAERMKCREA--EKVSNRS----QVSGGK----KFRGVRQ 110

Query: 112 RPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPP--QTDQ 169
           RPWG+WAAEIRDP +R R+WLGT++TAEEAA+VYD AAIR++GP A TNF +PP      
Sbjct: 111 RPWGRWAAEIRDPSRRGRLWLGTYDTAEEAAMVYDDAAIRIRGPDALTNFAKPPPKTIPP 170

Query: 170 TFDFVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKT--------------EL 215
             +   SGYDS ++S+S      + SPTSVLRF S+EE +                  E 
Sbjct: 171 EINPSVSGYDSGRDSRS------VCSPTSVLRFQSSEEPQSQSQSQPESDWRPLWEVKEE 224

Query: 216 FNLESDRCC------------PSQDSFQIYDSELLDS-ATPAPIFFDDKMCVP--LLKEN 260
                D C             P +   ++ +   ++   TPAPI F++ M +P  +L E+
Sbjct: 225 ATFAHDFCLIDSNSHLETEWRPVEQVMEMLNECFVNEFQTPAPICFEE-MNIPDMILAES 283

Query: 261 LG-DVSVDLGGDFDSCISEWDVDNYFQD 287
           +G D+SV L  D  SC   WDVD Y++D
Sbjct: 284 IGGDISVRLDEDIGSCT--WDVDAYYED 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136351|gb|ADN34165.1| AP2/ERF domain-containing transcription factor [Cucumis melo subsp. melo]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/299 (44%), Positives = 174/299 (58%), Gaps = 51/299 (17%)

Query: 8   SSGAKYREQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEE--RGARVKKQINEI 65
           S G K+RE R+ T    KP+   TK++R+S TD DAT+SSS EDEE      VK+ + EI
Sbjct: 6   SGGIKFRETRTVTH---KPAAE-TKLVRISYTDADATDSSSGEDEEPILVRHVKRHVTEI 61

Query: 66  RIV--ECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRD 123
           R++  +CSK          K   K R+ P +     R    K+RGVR RPWGKWAAEIRD
Sbjct: 62  RLLTTDCSK----------KAPPKSRANPPRNSESHR----KFRGVRRRPWGKWAAEIRD 107

Query: 124 PFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFL-RPPQTDQTFDFVTSGYDSEK 182
           P +RTRVWLGT++TAEEAA+VYD+AA+RL+GP A TNF+   P ++ T   VT       
Sbjct: 108 PLRRTRVWLGTYDTAEEAAVVYDEAAVRLRGPSALTNFVAETPHSETT--LVTYLTPPPP 165

Query: 183 ESQSQTP-------TSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQ-IYD 234
           E+QS          + ++ SPTSVLR    EE   A     + ES      +D F  +YD
Sbjct: 166 ENQSTAAVVSETKESRSVCSPTSVLRLE--EENWRAIDHYLSEESGL----EDEFNWLYD 219

Query: 235 ----SELLDSATPAPIFFDD-KMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDP 288
               S L +  +P PIF D  +M +P   E+ GD+SV    DFDSC  +WDV+NYFQDP
Sbjct: 220 RNSNSFLFNLISPQPIFSDQMEMTIPKW-EDFGDISV----DFDSC--KWDVENYFQDP 271

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432090|ref|XP_004133833.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Cucumis sativus] gi|449477898|ref|XP_004155156.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Cucumis sativus]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/299 (44%), Positives = 173/299 (57%), Gaps = 51/299 (17%)

Query: 8   SSGAKYREQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEE--RGARVKKQINEI 65
           S G K+RE R+ T    KP+   TK++R+S TD DAT+SSS EDEE      VK+ + EI
Sbjct: 6   SGGIKFRETRTVTH---KPAAE-TKLVRISYTDADATDSSSGEDEEPILVRHVKRHVTEI 61

Query: 66  RIV--ECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRD 123
           R++  +CSK          K   K R+ P +     R    K+RGVR RPWGKWAAEIRD
Sbjct: 62  RLLTTDCSK----------KAPPKSRANPPRNSESHR----KFRGVRRRPWGKWAAEIRD 107

Query: 124 PFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFL-RPPQTDQTFDFVTSGYDSEK 182
           P +RTRVWLGT++TAEEAA+VYDQAA+RL+GP A TNF+   P ++ T   VT       
Sbjct: 108 PLRRTRVWLGTYDTAEEAAVVYDQAAVRLRGPSALTNFVAETPHSETT--LVTYLTPPPP 165

Query: 183 ESQSQTP-------TSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQ-IYD 234
           E+QS          + +I SPTSVLR    +E   A     + ES      +D F  +YD
Sbjct: 166 ENQSAAAAVSETKESRSICSPTSVLRLE--DENWRAIDHYLSEESGL----EDEFNWLYD 219

Query: 235 ----SELLDSATPAPIFFDD-KMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDP 288
               S L +   P PIF D  ++ +P   E+ GD+SV    DFDSC  +WDV+NYFQDP
Sbjct: 220 RNSNSFLFNLINPQPIFSDQLEITIPKW-EDFGDISV----DFDSC--KWDVENYFQDP 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503125|ref|XP_003520362.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Glycine max]

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 166/299 (55%), Gaps = 51/299 (17%)

Query: 15  EQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEERGARVKKQINEIRIV------ 68
           ++++  T +VK S    KVIR+SVTD DAT+SSSDE+ E  ARVKK INEI+IV      
Sbjct: 4   QRKTIITKLVKSSKFLPKVIRISVTDQDATDSSSDEEGEH-ARVKKVINEIKIVCVNNKK 62

Query: 69  ---------ECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYD-----NKYRGVRMRPW 114
                     C  +N    +ES++ + ++ + PL K VG  + +     +K+RGVR RPW
Sbjct: 63  NHKNHDNDSSCCYANATKENESLRPQQQNIN-PLNK-VGYMNQNQNLKQHKFRGVRQRPW 120

Query: 115 GKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFV 174
           G+WAAEIRDP +RTRVWLGTF+TAEEAA+VYD+AAI+ +G  A TNF++P   D      
Sbjct: 121 GRWAAEIRDPTRRTRVWLGTFDTAEEAAMVYDKAAIKFRGAEAVTNFIKPRLKDH----- 175

Query: 175 TSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIEL-----AKTELFN-LESDRCCPSQD 228
                 E +S     +SA  SPTSVL F    E  L      + E+FN L +D  C   D
Sbjct: 176 -ESVSLECDSVVNGTSSACASPTSVLVFQPWIEPPLLEETFKEEEVFNGLTTDVYC--DD 232

Query: 229 SFQIYDSELLDSATPAPIFFDDKMCVPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQD 287
            F   +  L D   P P  F +  C          + + L  D +SC  +WDVDNYF D
Sbjct: 233 GFLFSNEALCDQ--PLPTTFCNVDC----------IDIPLDEDLESC--KWDVDNYFSD 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504161|ref|XP_003520867.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Glycine max]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 163/307 (53%), Gaps = 47/307 (15%)

Query: 11  AKYREQRSTTTTVVKPS---CSGTKVIRVSVTDGDATESSSDEDEERGA----RVKKQIN 63
           A++ E++  T   VKP     +  KV+R+SV D  AT+   DEDE+ G     R+KK +N
Sbjct: 3   ARFSERKVVTYKHVKPGDILNAAPKVVRISVMDPYATD---DEDEDEGLVIHPRMKKFVN 59

Query: 64  EIRIVECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDN----KYRGVRMRPWGKWAA 119
           EIRIVE S +N   C  +   R  +  + L++   G++ D+    + RGVR RPWG+WAA
Sbjct: 60  EIRIVEKSSTN---CESAGVNRTSN--VSLRQHYKGKTGDSLEKKRLRGVRQRPWGRWAA 114

Query: 120 EIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFD------- 172
           EIRDP +R RVWLGT++TAEEAA+VYD+AAI  +G  A TNF++PP  +   D       
Sbjct: 115 EIRDPVKRIRVWLGTYDTAEEAAMVYDKAAIAFRGSKALTNFIKPPTREDLCDCGPNETE 174

Query: 173 ---FVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDS 229
               V+   DS +ES        + SPTSVL   S  E+ L +    +L S     SQDS
Sbjct: 175 ASVAVSGENDSSEESH-------LSSPTSVLGLQS-VELMLDEVSETDLPSKEESSSQDS 226

Query: 230 FQIYDSE------LLDSATPAPIFFDDKMCV--PLLKENLGDVSVDLGGDFDSCISEWDV 281
           F   DS         +  T  P+F  +      P   +   D+S  +  DF S    WD+
Sbjct: 227 FLFLDSHSPSIDCYFNFETLPPVFLHETSITQQPDFHDKFSDISHLVNEDFQSW--NWDI 284

Query: 282 DNYFQDP 288
           D+YF DP
Sbjct: 285 DSYFSDP 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560648|ref|XP_003548602.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Glycine max]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 155/297 (52%), Gaps = 49/297 (16%)

Query: 16  QRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEERGARVKKQINEIRIVECSKS-- 73
           +++ TT  +K S    KV+R+SVTD DAT+SSSDE+ ER    K  +NEI  V  +K   
Sbjct: 5   RKTITTKFMKSSKFFPKVVRISVTDQDATDSSSDEEAERVKVKKIVVNEIVCVNNNKKRH 64

Query: 74  ---NEISC-----SESVKQRMKDRSIPLKKRVGGRSY--------DNKYRGVRMRPWGKW 117
              N   C     +ES+KQ+ +   + L    G   Y         +K+RGVR RPWG+W
Sbjct: 65  NNDNSGCCYSTKDNESLKQQRQQSLVSL----GEEGYMDSKQSLKQHKFRGVRQRPWGRW 120

Query: 118 AAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTSG 177
           AAEIRDP +RTRVWLGTF+TAEEAA+VYD+AAI+ +G  A TNF++PP  D         
Sbjct: 121 AAEIRDPLRRTRVWLGTFDTAEEAAMVYDKAAIKFRGAEAVTNFIKPPLKDDAVSLEIC- 179

Query: 178 YDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIYDSEL 237
                ES     + A  SPTSVL F    E  L                +++F+   S L
Sbjct: 180 -----ESVVSGTSCACDSPTSVLVFQPWMEPPLL---------------EETFKEVFSGL 219

Query: 238 LDSATPAPIFFDDKMC---VPLLKENLGDVSVDLGGDFDSCISEWDVDNYFQDPPPL 291
            D      +F +D +C   +P    N  D  + L  DF+SC  +W VDNYF D   L
Sbjct: 220 TDGYDDGFLFSNDSLCDQPLPTTFSN-ADCIIPLDEDFESC--KWVVDNYFSDDTSL 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464098|ref|XP_004149766.1| PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus] gi|449527296|ref|XP_004170648.1| PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/287 (42%), Positives = 164/287 (57%), Gaps = 40/287 (13%)

Query: 12  KYREQRSTTTTVVKPSCSGTKVIRVSVTDGDATESSSDEDEERGA--RVKKQINEIRIVE 69
           KY E R+ T  V  P   G KV+R+SVTD DAT+SSSDE++E     RV+K +NEI I E
Sbjct: 16  KYTEHRNQTRLVSSP-LMGPKVVRISVTDADATDSSSDEEKEEYVCRRVRKFVNEITI-E 73

Query: 70  CSKSNEISCSESVKQRMKDRSI---PLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQ 126
            S + + S  +S   + K  ++    LK+   G     K+RGVR RPWGKWAAEIRDP +
Sbjct: 74  ASSTGKSSRKKSTGGKSKFAAVNRGSLKQMPAG---SRKFRGVRQRPWGKWAAEIRDPSR 130

Query: 127 RTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPP--QTDQTFDFVTSGYDSEKES 184
           R RVWLGT+ TAEEAA+VYD AAI+L+GP A TNF  PP   + +T   V+SGY S +ES
Sbjct: 131 RVRVWLGTYNTAEEAAMVYDNAAIQLRGPTALTNFTPPPVKSSPETTPAVSSGYVSTEES 190

Query: 185 QSQTPTSAIPSPTSVLRFHS---------------NEEIELAKTELFNLESDRCCPSQ-D 228
                   + SPTSVLR  S                +EI   ++E F   SD    S  D
Sbjct: 191 NDN-----LSSPTSVLRCPSPSANDAVSEKASATTGKEIRGEESEKF---SDFSFHSNCD 242

Query: 229 SFQIYDSELLDSATPAPIFFDDKMCV-PLLKENLG-DVSVDLGGDFD 273
           +F  + +++ D   P P  F+DK+    LLK + G  + ++ G DF+
Sbjct: 243 TF--FPNDIFDFQAPVPSPFEDKLLNDALLKGDYGSSMFINPGDDFE 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668903|gb|ADE41106.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 170/347 (48%), Gaps = 85/347 (24%)

Query: 12  KYREQRSTTTTVVKPSCSGT---------KVIRVSVTDGDATESSSDEDEERGAR--VKK 60
           KY E RSTT  ++KP    T         +++R+SVTD DAT+SSSDE+EE   R  VK 
Sbjct: 10  KYSEHRSTTKKLMKPRKKATSESASTVTPRIVRISVTDPDATDSSSDEEEEFFGRQRVKH 69

Query: 61  QINEIRIVECSKSNEISCSESVKQRMKDRSI---PLKKRVGGRSYDNKYRGVRMRPWGKW 117
            +NEI I E    N +  +   K+   +  +   P+K  V   +   KYRGVR RPWGKW
Sbjct: 70  YVNEINI-ETDFRNSLVINNGRKRPAAEVPVNRRPMKNAVSPPNGGKKYRGVRQRPWGKW 128

Query: 118 AAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF---------------L 162
           AAEIRDP +R R+WLGTF+TAEEAA+VYD AAI+L+GP A TNF               +
Sbjct: 129 AAEIRDPARRQRLWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFVAPPPKEEEKPEPPVI 188

Query: 163 RPPQTDQTFDFVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELA----KTELF-- 216
              + +       SGYDS  ES +      + SPTSVL F S   IE A    K ++F  
Sbjct: 189 ESIEVETNGTTSASGYDSGSESHN------LASPTSVLHFRSQPSIEDAGKPQKIQVFDR 242

Query: 217 ------------NLESDRC----------CPSQD---SFQIYDSELLDSATPAPIFFDDK 251
                       N+ SD             P  D   SF   +S L DS    P+FFDD 
Sbjct: 243 VDEDEDETETGTNILSDDLSYFGNYLPLDLPYFDDAFSFPAPESPLFDS----PLFFDD- 297

Query: 252 MCVPLLKENL------GDVSVDLGGDFDSCISE-----WDVDNYFQD 287
             VP    +L       D S  L   +D+ +S      +  D+YFQD
Sbjct: 298 --VPAAAASLPDCFMKDDFSELLRDTYDTSLSHTTSPMFQGDDYFQD 342

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2076720	315	CRF6 "AT3G61630" [Arabidopsis	0.688	0.644	0.393	3.5e-36
TAIR|locus:2062954	294	CRF5 "AT2G46310" [Arabidopsis	0.884	0.887	0.372	8.3e-35
TAIR|locus:2128429	343	CRF2 "AT4G23750" [Arabidopsis	0.661	0.568	0.333	2.6e-30
TAIR|locus:2132962	335	CRF4 "AT4G27950" [Arabidopsis	0.691	0.608	0.396	7.9e-30
TAIR|locus:2154272	354	CRF3 "AT5G53290" [Arabidopsis	0.508	0.423	0.44	4.7e-29
TAIR|locus:2136078	287	CRF1 "AT4G11140" [Arabidopsis	0.745	0.766	0.354	1.9e-26
TAIR|locus:2024249	245	ERF10 "ERF domain protein 10"	0.298	0.359	0.549	4.7e-22
TAIR|locus:2061956	171	ERF71 "ethylene response facto	0.505	0.871	0.406	5.5e-22
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.393	0.547	0.453	3e-21
TAIR|locus:2176095	391	ABR1 "ABA REPRESSOR1" [Arabido	0.440	0.332	0.401	8.3e-21

TAIR|locus:2076720 CRF6 "AT3G61630" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 85/216 (39%), Positives = 117/216 (54%)

Query:    12 KYREQRSTTTTVVKPSCSGTKVIRVSVXXXXXXXXXXXXXXXXXXXV----KKQINEIRI 67
             K+ E R+ T     PS    +++R++V                   V    K+ + EIR 
Sbjct:     9 KFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIRF 68

Query:    68 VECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQR 127
              +  +S+  + +   K + ++ S+ ++  V       KYRGVR RPWGK+AAEIRDP  R
Sbjct:    69 CQ-GESSSSTAARKGKHK-EEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSR 126

Query:   128 TRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVT-SGYDSEKESQS 186
             TR+WLGTF TAEEAA+ YD+AAI LKGP A TNFL PP      D  T S  D  ++S+ 
Sbjct:   127 TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPVIDLQTVSACDYGRDSRQ 186

Query:   187 QTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDR 222
                  ++ SPTSVLRF+ NEE E  + E   L  +R
Sbjct:   187 -----SLHSPTSVLRFNVNEETE-HEIEAIELSPER 216

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2062954 CRF5 "AT2G46310" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 111/298 (37%), Positives = 149/298 (50%)

Query:    11 AKYREQRSTTTTVVKPSCSGTKVIRVSVXXXXXXXXXXXXXXXXXXXVKKQINEIRIVEC 70
             +KY   R  T+T         K+I                       VK+ ++EIR   C
Sbjct:     8 SKYTVHRKITSTPFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDEIRF--C 65

Query:    71 SKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDN--KYRGVRMRPWGKWAAEIRDPFQRT 128
              + +E        ++ K +S       GG    +  KYRGVR RPWGK+AAEIRDP  RT
Sbjct:    66 DEDDE----PKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSRT 121

Query:   129 RVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQT--------FDFVT-SGYD 179
             R+WLGTF TAEEAA+ YD+AAIR+KG +AQTNFL PP +  T         D  T SG D
Sbjct:   122 RLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETVSGCD 181

Query:   180 SEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPS--QDSFQIYDSEL 237
             S +ESQ      ++ SPTSVLRF  N+E E  +TE    ++    P   +     +DSE+
Sbjct:   182 SARESQI-----SLCSPTSVLRFSHNDETEY-RTEPTEEQNPFFLPDLFRSGDYFWDSEI 235

Query:   238 LDSATPAPIFFDD--KMCVPLLKEN--LGDVSVDLGGDFDSCI----SEWDVDNYFQD 287
                 TP P+F D+  +  +P +  N  + D   +L   F   +    S WDVD +FQD
Sbjct:   236 ----TPDPLFLDEFHQSLLPNINNNNTVCDKDTNLSDSFPLGVIGDFSSWDVDEFFQD 289

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128429 CRF2 "AT4G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 70/210 (33%), Positives = 107/210 (50%)

Query:    12 KYREQRSTTTTVVKP--SCSGTKVIRVSVXXXXXXXXXXXXXX-------XXXXXVKKQI 62
             K+ E ++ TTT+V    +   T+++R+SV                          VKK +
Sbjct:    13 KFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFV 72

Query:    63 NEIRI----VECSKSNEISCSESVKQRMKDRSI--PLKKRVGGRSYDNKYRGVRMRPWGK 116
             NE+ +    V      ++   +  K+ +K  S   P+       + + K+RGVR RPWGK
Sbjct:    73 NEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGK 132

Query:   117 WAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTS 176
             WAAEIRDP +R R+WLGT+ TAEEAA+VYD AAI+L+GP A TNF   P T         
Sbjct:   133 WAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAPPP 192

Query:   177 GYDSEKESQSQTPTSAIPSPTSVLRFHSNE 206
                 +K+ ++     ++ + +S+ R  SN+
Sbjct:   193 SPVKKKKKKNNKSKKSVTASSSISRSSSND 222

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048364 "root development" evidence=IEP

GO:0042802 "identical protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2132962 CRF4 "AT4G27950" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 86/217 (39%), Positives = 122/217 (56%)

Query:    58 VKKQINEIRIVECSKSN-EISCSESV-KQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWG 115
             VK+ INEIR+   S S  ++S S +  ++R+   S   K  V G++   KYRGVR RPWG
Sbjct:    69 VKRLINEIRVEPSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQN-QKKYRGVRQRPWG 127

Query:   116 KWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF-LRP-PQTDQTFDF 173
             KWAAEIRDP QR R+WLGTF TAEEAA+VYD AAI+L+GP A TNF ++P P+  Q  + 
Sbjct:   128 KWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQ 187

Query:   174 VTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESDRCCPSQDSFQIY 233
                   S   S+S   +  + SPTSVL + +    E   + +  ++ +   P Q+    +
Sbjct:   188 EPESNMSVSISESMDDSQHLSSPTSVLNYQTYVSEEPIDSLIKPVKQEFLEPEQEPISWH 247

Query:   234 ----DSELLDSATPAPIFFDDKMCVPLLKENLGDVSV 266
                 ++   D + P  I F D        E+L D+S+
Sbjct:   248 LGEGNTNTNDDSFPLDITFLDNY----FNESLPDISI 280

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2154272 CRF3 "AT5G53290" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 77/175 (44%), Positives = 101/175 (57%)

Query:    58 VKKQINEIRIVECSKSNEIS-CSESVKQRMKDRSIPLKKRVGGRSYDN----------KY 106
             VK+ +NEI  VE S +N ++  S   ++R+   S   +     R   N          K+
Sbjct:    67 VKRFVNEIT-VEPSCNNVVTGVSMKDRKRLSSSSDETQSPASSRQRPNNKVSVSGQIKKF 125

Query:   107 RGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQ 166
             RGVR RPWGKWAAEIRDP QR R+WLGTFETAEEAA+VYD AAIRL+GP A TNF  PPQ
Sbjct:   126 RGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQ 185

Query:   167 TDQTFD-----------FVTSGYDSEKESQS-QTPTSAIPSPTSVLRFHSNEEIE 209
              ++  +            +T+   +   S+S +     + SPTSVL  H +EEI+
Sbjct:   186 EEEEEEEPEPVIEEKPVIMTTPTPTTSSSESTEEDLQHLSSPTSVLN-HRSEEIQ 239

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2136078 CRF1 "AT4G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 85/240 (35%), Positives = 128/240 (53%)

Query:    58 VKKQINEIRIVECSKSNEISCSESVKQRMKDRSIPLKKRVGGRSYDNKYRGVRMRPWGKW 117
             VKK + E+ +++   S++    + +K++ K R + +   V   +   K+RGVR RPWGKW
Sbjct:    45 VKKYVKEV-VLDSVVSDK---EKPMKKKRKKRVVTVPVVV--TTATRKFRGVRQRPWGKW 98

Query:   118 AAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVT-- 175
             AAEIRDP +R RVWLGTF+TAEEAA+VYD AAI+L+GP+A+ NF  PP T+   +  T  
Sbjct:    99 AAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTENVEEASTEV 158

Query:   176 ---SGYDSEKESQSQTPTSAIPSPTSVLRFHSNEE-IELAKTELFNLESDRCCPSQDSFQ 231
                S +        ++P S + SP S       EE + ++  E+   +      S  S  
Sbjct:   159 KGVSDFIIGGGECLRSPVSVLESPFSGESTAVKEEFVGVSTAEIVVKKEPSFNGSDFSAP 218

Query:   232 IY-DSELLDSATPAPIFFDDKMCVPLLKENL-GDVSVDLGGDFDSC--ISEWDVDNYFQD 287
             ++ D ++   +T     F       L  +NL  D+S   G  F S    S W V+++FQD
Sbjct:   219 LFSDDDVFGFSTSMSESFGGD----LFGDNLFADMSFGSGFGFGSGSGFSSWHVEDHFQD 274

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2024249 ERF10 "ERF domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 50/91 (54%), Positives = 64/91 (70%)

Query:    72 KSNEISCSESVKQRMKDRSIPLKKRVGG-RSYDNKYRGVRMRPWGKWAAEIRDPFQRTRV 130
             KS E+S  + VK+R K+ +  L    GG +S + +YRGVR RPWG++AAEIRDP ++ RV
Sbjct:    20 KSKEVS-DKGVKKR-KNVTKALAVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRV 77

Query:   131 WLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
             WLG+F T EEAA  YD AAIR +G  A TNF
Sbjct:    78 WLGSFNTGEEAARAYDSAAIRFRGSKATTNF 108

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2061956 ERF71 "ethylene response factor 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 63/155 (40%), Positives = 92/155 (59%)

Query:    71 SKS-NEISCSESVKQRMKDRSIPL-KKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRT 128
             SKS +E S   SV  R K + + + ++R G R   N YRG+R RPWGKWAAEIRDP +  
Sbjct:    13 SKSESEPSQLGSVSSRKKRKPVSVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGV 72

Query:   129 RVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPPQTDQTFDFVTSGYDSE--KESQS 186
             RVWLGTF+TA+EAA  YD AAI+++G  A+ NF    Q ++  D    G  +E   E+Q 
Sbjct:    73 RVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNT-QVEEEADTKPGGNQNELISENQV 131

Query:   187 QTPTSAIPSPTSVLRFHSNEEIE-LAKTELFNLES 220
             ++ +  + +    +RF+     +  + T++ NL S
Sbjct:   132 ESLSEDLMALEDYMRFYQIPVADDQSATDIGNLWS 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0034059 "response to anoxia" evidence=IGI

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/119 (45%), Positives = 68/119 (57%)

Query:   106 YRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF---L 162
             YRGVR RPWGKWAAEIRDP +  RVWLGTFETAEEAAL YD+AA++ KG  A+ NF   +
Sbjct:    39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERV 98

Query:   163 RPPQTDQTFDFVTSGYDSEKESQSQTPTSAIPSPTSVLRFHSNEEIELAKTELFNLESD 221
             + P T  T      G      S    P     + TS    ++ + ++ A+    N E D
Sbjct:    99 QGPTTTTTISHAPRGVSESMNSPPPRPGPPSTTTTSWPMTYNQDILQYAQLLTSNNEVD 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2176095 ABR1 "ABA REPRESSOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 8.3e-21, P = 8.3e-21
 Identities = 57/142 (40%), Positives = 76/142 (53%)

Query:   105 KYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF--- 161
             +YRGVR RPWGKWAAEIRDPF+  RVWLGTF+ AE AA  YD+AA+R +G  A+ NF   
Sbjct:   184 RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPEN 243

Query:   162 ---LRPPQTDQTFDFVTSGYDSEKESQSQTPTSAIP-SPTSVLRFHSNEEIELAKTELFN 217
                +RP  T+      T+     +   S + T+ +P  P S    HS   ++      +N
Sbjct:   244 VKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQSVHSQPLMQS-----YN 298

Query:   218 LESDRCCPSQDSFQIYDSELLD 239
             L        Q  FQ +  + LD
Sbjct:   299 LSYSEMARQQQQFQQHHQQSLD 320

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82339	CRF5_ARATH	No assigned EC number	0.4188	0.8508	0.8537	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026980001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (314 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-32
pfam00847	53	pfam00847, AP2, AP2 domain	2e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (294), Expect = 1e-33
 Identities = 39/57 (68%), Positives = 45/57 (78%)

Query: 105 KYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
           KYRGVR RPWGKW AEIRDP +  RVWLGTF+TAEEAA  YD+AA + +G  A+ NF
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNF 57

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  113 bits (286), Expect = 2e-32
 Identities = 39/57 (68%), Positives = 45/57 (78%)

Query: 105 KYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
           KYRGVR RPWGKW AEIRDP    R+WLGTF+TAEEAA  YD+AA++L+G  A  NF
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 105 KYRGVRMRP-WGKWAAEIRDP--FQRTRVWLGTFETAEEAALVYDQAAIRLKG 154
            Y+GVR    WG+W AEIRDP   ++ R  LGTF T EEAA     A ++L+G
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.82
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.79
PHA00280	121	putative NHN endonuclease	99.58
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.12

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.82  E-value=3e-20  Score=136.74  Aligned_cols=60  Identities=65%  Similarity=1.155  Sum_probs=57.1

Q ss_pred             CccccEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 022553          104 NKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLR  163 (295)
Q Consensus       104 S~yRGVr~r~~GKW~AeIr~p~~~kriwLGTFdT~EEAA~AYD~Aa~~l~G~~A~~NF~~  163 (295)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.|+++++|..+.+|||.
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~   60 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD   60 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence            689999988889999999997669999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.79  E-value=2.8e-19  Score=133.28  Aligned_cols=61  Identities=64%  Similarity=1.129  Sum_probs=57.9

Q ss_pred             ccccEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 022553          105 KYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRPP  165 (295)
Q Consensus       105 ~yRGVr~r~~GKW~AeIr~p~~~kriwLGTFdT~EEAA~AYD~Aa~~l~G~~A~~NF~~~~  165 (295)
                      +|+||+++++|||+|+|++|.+++++|||+|+|+||||.|||.|+++++|..+.+|||.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~   61 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL   61 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCcc
Confidence            5899988899999999999999999999999999999999999999999999999998653

>PHA00280 putative NHN endonuclease

Probab=99.58  E-value=3.2e-15  Score=125.68  Aligned_cols=72  Identities=14%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             hccccCcccccccCCCCCCCCccccE-EeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 022553           84 QRMKDRSIPLKKRVGGRSYDNKYRGV-RMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQ  158 (295)
Q Consensus        84 ~r~~~r~~~~~~~~~~~~~~S~yRGV-r~r~~GKW~AeIr~p~~~kriwLGTFdT~EEAA~AYD~Aa~~l~G~~A~  158 (295)
                      =|.+++.+|++|++..++|+|||+|| +.+..|||+|+|++  +||+++||.|+++|+|+.||. ++.+|||.+|.
T Consensus        47 Lr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         47 LRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            45578888989988889999999999 56788999999999  999999999999999999997 77899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.12  E-value=1.9e-10  Score=82.57  Aligned_cols=52  Identities=35%  Similarity=0.494  Sum_probs=45.4

Q ss_pred             CccccEE-eCCCCcEEEEEecCCC---CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 022553          104 NKYRGVR-MRPWGKWAAEIRDPFQ---RTRVWLGTFETAEEAALVYDQAAIRLKGP  155 (295)
Q Consensus       104 S~yRGVr-~r~~GKW~AeIr~p~~---~kriwLGTFdT~EEAA~AYD~Aa~~l~G~  155 (295)
                      |+|+||+ .+..++|+|.|+++..   +++++||.|++++||++||+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899995 5678999999999532   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		7e-18
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		7e-18

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 106 YRGVRMRPWGKWAAEIRDPFQR-TRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
           YRGVR RPWGK+AAEIRDP +   RVWLGTFETAE+AAL YD+AA R++G  A  NF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 106 YRGVRMRPWGKWAAEIRDPFQR-TRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
           YRGVR RPWGK+AAEIRDP +   RVWLGTFETAE+AAL YD+AA R++G  A  NF
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-35

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  121 bits (305), Expect = 2e-35
 Identities = 40/58 (68%), Positives = 46/58 (79%), Gaps = 1/58 (1%)

Query: 105 KYRGVRMRPWGKWAAEIRDPFQR-TRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
            YRGVR RPWGK+AAEIRDP +   RVWLGTFETAE+AAL YD+AA R++G  A  NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.11
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	88.71
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	81.37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=2.2e-24  Score=160.77  Aligned_cols=60  Identities=67%  Similarity=1.129  Sum_probs=56.9

Q ss_pred             ccccEEeCCCCcEEEEEecCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 022553          105 KYRGVRMRPWGKWAAEIRDPFQ-RTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRP  164 (295)
Q Consensus       105 ~yRGVr~r~~GKW~AeIr~p~~-~kriwLGTFdT~EEAA~AYD~Aa~~l~G~~A~~NF~~~  164 (295)
                      +||||++++||||+|+|++|.. |+++|||||+|+||||+|||.|++.++|..|.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            7999998999999999999974 79999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.11  E-value=0.33  Score=37.32  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             CCCCccccE-EeCCCCcEEEEEecCCCCeEE
Q 022553          101 SYDNKYRGV-RMRPWGKWAAEIRDPFQRTRV  130 (295)
Q Consensus       101 ~~~S~yRGV-r~r~~GKW~AeIr~p~~~kri  130 (295)
                      ..+|+|.|| |..+.+.|.|.-.+  +|+|.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            457999999 67788999999998  56443

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=88.71  E-value=0.0078  Score=51.22  Aligned_cols=56  Identities=7%  Similarity=-0.002  Sum_probs=36.4

Q ss_pred             ccCcccccccCCCCCCCCccccEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHH
Q 022553           87 KDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYD  146 (295)
Q Consensus        87 ~~r~~~~~~~~~~~~~~S~yRGVr~r~~GKW~AeIr~p~~~kriwLGTFdT~EEAA~AYD  146 (295)
                      +++.++++++.....+ ..++||.....++|.+.|..  . +.++||.|.|.+|||++|.
T Consensus        91 ~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           91 VTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             ECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             CCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            4555554443322222 12467733445779999988  5 5678999999999999964

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=81.37  E-value=2.4  Score=37.57  Aligned_cols=42  Identities=21%  Similarity=0.107  Sum_probs=32.3

Q ss_pred             ccEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 022553          107 RGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRL  152 (295)
Q Consensus       107 RGVr~r~~GKW~AeIr~p~~~kriwLGTFdT~EEAA~AYD~Aa~~l  152 (295)
                      .||++++.|.|..+.+.  .|+++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            47888888999876654  788999996  9999887776655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (272), Expect = 4e-31
 Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 1/58 (1%)

Query: 105 KYRGVRMRPWGKWAAEIRDPF-QRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNF 161
            YRGVR RPWGK+AAEIRDP     RVWLGTFETAE+AAL YD+AA R++G  A  NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.89

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=3.3e-24  Score=158.53  Aligned_cols=59  Identities=68%  Similarity=1.149  Sum_probs=55.4

Q ss_pred             ccccEEeCCCCcEEEEEecCC-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 022553          105 KYRGVRMRPWGKWAAEIRDPF-QRTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLR  163 (295)
Q Consensus       105 ~yRGVr~r~~GKW~AeIr~p~-~~kriwLGTFdT~EEAA~AYD~Aa~~l~G~~A~~NF~~  163 (295)
                      .||||+++++|||+|+|++|. +++++|||||+|+||||+|||.|++.++|.+|.+|||-
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            599999889999999999975 45899999999999999999999999999999999984