Citrus Sinensis ID: 022632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MQGGIGLLGVGGGGGGGCNGNESGVSKVVESDDDELELGLGLSLGGVGGGGKGKVVSSWGECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDRQRAKPV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEcccccccccHccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHccccccccccccccccccccccccEccccccccccccccccccEEEEEEccccccEEEEcHHHHccHHHHHHHHHHHHcccccccccccccccccccHHHHccccccEEEEEEcccccEEEEccccHHHHHHHHHHHEEEcccHHHcccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mqggigllgvgggggggcngnesgvskvvesdddelelglglslggvggggkgkvvsswgecgriltakdfpsagrrpsnassssppvavsgtkraansvpregessppsasqvvgwppigaYRMNSLvnqakapiseeekvadekdkskdaskkkicngnktnnifsekAHLGFVKVnmdgvpigrkvdlNAHASYESLAQTLEEMFFastpainsiggeKDLATKAFKLLDGLSEFVLtyedkegdwmlvgdvpwRMFISSVKRLRIMRtseanglgprfqprndrqrakpv
Flexible Loop (DISEMBL)
MQGGIGLLGVGGGGGGGCNGNESGVSKVVESDDDELELGLGlslggvggggKGKVVSSWGECGRILTAKdfpsagrrpsnassssppvavsgTKRAANsvpregessppsasqvvGWPPIGAYRMNSLVNQAkapiseeekvadekdkskdaskkkicngnktnnifseKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEdkegdwmlvgdvPWRMFISSVKRLRIMRtseanglgprfqprndrqrakpv
Low Complexity Region (SEG)
MQggigllgvgggggggcngnesgvskvvesdddelelglglslggvggggkgkvvssWGECGRILTAKDFpsagrrpsnassssppvavsgTKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPIseeekvadekdkskdaskkkICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDRQRAKPV
Disordered region (IsUnstruct)
*************************************LGLGLSLGGVGGGGKGKVVSSWGECGRILTA**********************************************VGWPPIGAYRM*************************************TNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIM************************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************KAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAIN*****************GLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIM************************
Disordered Region (DISEMBL)
MQGGIGLLGVGGGGGGGCNGNESGVSKVVESDDDELELGLGLSLGGVGGGGKGKVVSSWGECGRILTAKDFP****************************************QVVGWPPIGAYRMNSLVNQAKAP*******************KKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRF************
Disordered Region (DISPRO)
***********GGGGGGC**NESGVSKVVESDDDELELGLGLS****************************************************************PPSASQVVGWPPIGAYRMNSLVNQ***************************************AHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGGIGLLGVGGGGGGGCNGNESGVSKVVESDDDELELGLGLSLGGVGGGGKGKVVSSWGECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDRQRAKPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q38831	247	Auxin-responsive protein	yes	no	0.680	0.809	0.578	3e-65
Q38830	239	Auxin-responsive protein	no	no	0.690	0.849	0.566	4e-61
A2XB18	281	Auxin-responsive protein	N/A	no	0.775	0.811	0.494	6e-48
Q0DWF2	281	Auxin-responsive protein	yes	no	0.775	0.811	0.494	7e-48
Q38829	246	Auxin-responsive protein	no	no	0.710	0.849	0.459	3e-44
Q38828	261	Auxin-responsive protein	no	no	0.551	0.620	0.479	2e-35
Q38825	243	Auxin-responsive protein	no	no	0.605	0.732	0.401	7e-31
Q5W670	327	Auxin-responsive protein	no	no	0.636	0.571	0.397	8e-31
Q8LAL2	269	Auxin-responsive protein	no	no	0.574	0.628	0.411	1e-30
Q38832	228	Auxin-responsive protein	no	no	0.506	0.653	0.438	1e-30

>sp|Q38831|IAA13_ARATH Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/235 (57%), Positives = 160/235 (68%), Gaps = 35/235 (14%)

Query: 64  RILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPPIGAY 123
           R+LTAKDFPS G                 +KRAA+S    G S P S+SQVVGWPPIG++
Sbjct: 44  RLLTAKDFPSVG-----------------SKRAADSASHAGSSPPRSSSQVVGWPPIGSH 86

Query: 124 RMNSLVN-QAKAPISEEEKVADEK---DKSKDASKKKICNGNKTNNIFSEKAHLGFVKVN 179
           RMNSLVN QA     EEE+   +K   D+ KD +KK   NG         K  +GF+KVN
Sbjct: 87  RMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKK--VNG---------KVQVGFIKVN 135

Query: 180 MDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFV 239
           MDGV IGRKVDLNAH+SYE+LAQTLE+MFF + P    +  +    TK  +LLDG SEFV
Sbjct: 136 MDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQ---FTKPLRLLDGSSEFV 192

Query: 240 LTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDRQRAKPV 294
           LTYEDKEGDWMLVGDVPWRMFI+SVKRLR+M+TSEANGL  R Q  N+RQR +PV
Sbjct: 193 LTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNERQRKQPV 247

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38830|IAA12_ARATH Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 137/242 (56%), Positives = 157/242 (64%), Gaps = 39/242 (16%)

Query: 58  SWGECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGW 117
           +W E GRILTAKDFPS G                 +KR+A S   +G +SPP +SQVVGW
Sbjct: 32  AWKERGRILTAKDFPSVG-----------------SKRSAESSSHQG-ASPPRSSQVVGW 73

Query: 118 PPIGAYRMNSLVNQA--KAPISEE---EKVADEKDKSKDASKKKICNGNKTNNIFSEKAH 172
           PPIG +RMNSLVN    KA  +EE   EK   + D+ KD S K          +  +   
Sbjct: 74  PPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMK----------VNPKVQG 123

Query: 173 LGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLL 232
           LGFVKVNMDGV IGRKVD+ AH+SYE+LAQTLEEMFF  T      G       K  +LL
Sbjct: 124 LGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMT------GTTCREKVKPLRLL 177

Query: 233 DGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDRQRAK 292
           DG S+FVLTYEDKEGDWMLVGDVPWRMFI+SVKRLRIM TSEA+GL PR Q + DRQR  
Sbjct: 178 DGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQRNN 237

Query: 293 PV 294
           PV
Sbjct: 238 PV 239

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|A2XB18|IAA10_ORYSI Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2

 Score =  191 bits (484), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/263 (49%), Positives = 157/263 (59%), Gaps = 35/263 (13%)

Query: 32  DDDELELGLGLSLGGVGGGGKGKVVSSWGECGRILTAKDF-PSAGRRP--SNASSSSPPV 88
           DD+ELELGL L       G K +       C RILTA+D  P+A   P  S +SSS    
Sbjct: 30  DDEELELGLSL-------GSKKQQQQQHAPC-RILTARDLQPAAALSPDSSVSSSSPAAA 81

Query: 89  AVSGTKRA----ANSVPREGESSPPSAS-QVVGWPPIGAYRMNSLVNQAKAPISE---EE 140
           A +G KRA    A + P    S  P +S  VVGWPPI  +RMNSL NQAK   SE   ++
Sbjct: 82  AAAGGKRAEGPTATTSPGTVASGHPHSSFGVVGWPPIRQFRMNSLFNQAKENTSETDTKK 141

Query: 141 KVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESL 200
              +E D  KD  +     G K   +       G+VKVNMDG  IGRKVDLNAH SY++L
Sbjct: 142 TATNESDVQKDKEE-----GEKKGRV------AGWVKVNMDGEVIGRKVDLNAHRSYKTL 190

Query: 201 AQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMF 260
           A  LE MF  + P+I          T + KLLD  +E+ LTYED++GDWMLVGDVPW MF
Sbjct: 191 ALALELMF--TKPSIGLCASHN---TNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMF 245

Query: 261 ISSVKRLRIMRTSEANGLGPRFQ 283
           +SSVKRLRIMRTS+ANGLG R+Q
Sbjct: 246 VSSVKRLRIMRTSDANGLGQRYQ 268

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2

 Score =  191 bits (484), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 130/263 (49%), Positives = 157/263 (59%), Gaps = 35/263 (13%)

Query: 32  DDDELELGLGLSLGGVGGGGKGKVVSSWGECGRILTAKDF-PSAGRRP--SNASSSSPPV 88
           DD+ELELGL L       G K +       C RILTA+D  P+A   P  S +SSS    
Sbjct: 30  DDEELELGLSL-------GSKKQQQQQHAPC-RILTARDLQPAAALSPDSSVSSSSPAAA 81

Query: 89  AVSGTKRA----ANSVPREGESSPPSAS-QVVGWPPIGAYRMNSLVNQAKAPISE---EE 140
           A +G KRA    A + P    S  P +S  VVGWPPI  +RMNSL NQAK   SE   ++
Sbjct: 82  AAAGGKRAEGPTATTSPGTVASGHPHSSFGVVGWPPIRQFRMNSLFNQAKENTSETDTKK 141

Query: 141 KVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESL 200
              +E D  KD  +     G K   +       G+VKVNMDG  IGRKVDLNAH SY++L
Sbjct: 142 TATNESDVQKDKEE-----GEKKGRV------AGWVKVNMDGEVIGRKVDLNAHRSYKTL 190

Query: 201 AQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMF 260
           A  LE MF  + P+I          T + KLLD  +E+ LTYED++GDWMLVGDVPW MF
Sbjct: 191 ALALELMF--TKPSIGLCASHN---TNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMF 245

Query: 261 ISSVKRLRIMRTSEANGLGPRFQ 283
           +SSVKRLRIMRTS+ANGLG R+Q
Sbjct: 246 VSSVKRLRIMRTSDANGLGQRYQ 268

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/244 (45%), Positives = 142/244 (58%), Gaps = 35/244 (14%)

Query: 34  DELELGLGLSLGGVGGGGKGKVVSSWGECGRILTAKDFPSAGRRPSNASSSSPPVAVSGT 93
           +ELELGL LSLG  G          + +C   + A D  S+    S + +S     ++G 
Sbjct: 32  NELELGLTLSLGRKG----------YRDCR--VYADDSSSSSSSSSLSRAS----VIAGI 75

Query: 94  KRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDAS 153
           KR A+S+         ++ QVVGWPPI  YRMNS+VNQAKA  +E+  +   +  +K+ S
Sbjct: 76  KRTADSMA-------ATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRS 128

Query: 154 KKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTP 213
                +  K  N         FVKV MDG+PIGRK+DLNAH  YESL+ TLEEMF     
Sbjct: 129 -----DSTKMRNSM-------FVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKL 176

Query: 214 AINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTS 273
              ++  +  + T    L DG S  VLTYEDKEGDWMLVGDVPW MFI SV+RLRIM+TS
Sbjct: 177 GSRTLETDGHMETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTS 236

Query: 274 EANG 277
           EA G
Sbjct: 237 EATG 240

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38828|IAA10_ARATH Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 106/169 (62%), Gaps = 7/169 (4%)

Query: 115 VGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLG 174
           VGWPP+  YR+NSLVNQAK+  +E           K+ +K  +      +  F + +   
Sbjct: 95  VGWPPLRTYRINSLVNQAKSLATEG---GLSSGIQKETTKSVVVAAKNDDACFIKSSRTS 151

Query: 175 -FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAI---NSIGGEKDLATKAFK 230
             VKV MDGV IGRKVDLNA  SY +L +TL+ MFF     +   N+ G +    T   K
Sbjct: 152 MLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSNTQGYKTIKETCTSK 211

Query: 231 LLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLG 279
           LLDG SE+++TY+DK+GDWMLVGDVPW+MF+ SV RLRIM+TS   G+G
Sbjct: 212 LLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGVG 260

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 111/204 (54%), Gaps = 26/204 (12%)

Query: 95  RAANSVPREGE-----SSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKS 149
           +  ++VP+E       S PP+ +QVVGWPP+  YR N +  Q  +  +EE          
Sbjct: 59  KNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEE---------- 108

Query: 150 KDASKKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFF 209
                    +  K  N     A  G VKV+MDG P  RKVDL  + SY+ L+  L +MF 
Sbjct: 109 --------ASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFS 160

Query: 210 ASTPAINSIGGEKDLATKAFKLLDGL--SEFVLTYEDKEGDWMLVGDVPWRMFISSVKRL 267
           + T       G  D   ++ KL++ L  SE+V +YEDK+GDWMLVGDVPW MF+ S KRL
Sbjct: 161 SFTMGNYGAQGMIDFMNES-KLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRL 219

Query: 268 RIMRTSEANGLGPRFQPRNDRQRA 291
           RIM+ SEA GL PR   +  + R+
Sbjct: 220 RIMKGSEAVGLAPRAMEKYCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W670|IAA18_ORYSJ Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 117/219 (53%), Gaps = 32/219 (14%)

Query: 61  ECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPPI 120
           ECG+ LT  D   AG R       SPP + +    A +S P+   + PP    VVGWPPI
Sbjct: 124 ECGKELTLGDENMAGER-KKGCCPSPPCSAA----AHSSNPQGRGAIPP----VVGWPPI 174

Query: 121 GAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNM 180
            ++R N L N +    S E +  +  DK+K   KK+                   VK+NM
Sbjct: 175 RSFRRN-LTNGSSFKQSPERQNDEADDKAKPICKKR-----------------PLVKINM 216

Query: 181 DGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIG----GEKDLATKAFK-LLDGL 235
           DG+PIGRKVDL  + SY+ L+  +EE+F     A   +     GE+    K F  LLDG 
Sbjct: 217 DGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGT 276

Query: 236 SEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSE 274
             + L YED +GD ML GD+PW++F+S+VKRLR+MR SE
Sbjct: 277 GVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSE 315

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 109/197 (55%), Gaps = 28/197 (14%)

Query: 78  PSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPIS 137
           PSN ++S P ++    KR A                VVGWPP+ ++R N L + + + + 
Sbjct: 84  PSNKTTSVPHIS---QKRTA-------------PGPVVGWPPVRSFRKN-LASTSSSKLG 126

Query: 138 EEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASY 197
            E     + +KS D  K+              K    FVK+NMDGVPIGRKVDLNA+ SY
Sbjct: 127 NESSHGGQINKSDDGEKQ-----------VETKKEGMFVKINMDGVPIGRKVDLNAYNSY 175

Query: 198 ESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPW 257
           E L+  ++++F     A   I   +        LLDG  EF LTYED EGD MLVGDVPW
Sbjct: 176 EQLSFVVDKLFRGLLAAQRDISDGQGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPW 235

Query: 258 RMFISSVKRLRIMRTSE 274
           +MF+SSVKRLR++++SE
Sbjct: 236 QMFVSSVKRLRVIKSSE 252

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 100/178 (56%), Gaps = 29/178 (16%)

Query: 106 SSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNN 165
           S PP+ +QVVGWPP+  YR N + NQ                KS +A +     G     
Sbjct: 69  SKPPAKAQVVGWPPVRNYRKNVMANQ----------------KSGEAEEAMSSGG----- 107

Query: 166 IFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLA 225
                  + FVKV+MDG P  RKVDL  + SY+ L+  L +MF + T       G  D  
Sbjct: 108 -----GTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFM 162

Query: 226 TKAFKLLDGL--SEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPR 281
            ++ K++D L  SE+V +YEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GL PR
Sbjct: 163 NES-KVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPR 219

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255574879	318	Auxin-responsive protein IAA13, putative	0.802	0.742	0.723	2e-94
118484337	303	unknown [Populus trichocarpa]	0.819	0.795	0.728	8e-93
224107521	276	predicted protein [Populus trichocarpa]	0.734	0.782	0.710	3e-87
224099985	258	predicted protein [Populus trichocarpa]	0.727	0.829	0.706	1e-84
399894421	306	ARF domain class transcription factor [P	0.778	0.748	0.674	5e-82
302398577	306	ARF domain class transcription factor [M	0.778	0.748	0.662	9e-81
359477690	321	PREDICTED: auxin-responsive protein IAA1	0.795	0.728	0.657	1e-79
429326560	291	hypothetical protein [Populus tomentosa]	0.727	0.735	0.623	1e-79
296083735	283	unnamed protein product [Vitis vinifera]	0.795	0.826	0.657	2e-79
225433277	314	PREDICTED: auxin-responsive protein IAA1	0.778	0.729	0.646	8e-78

>gi|255574879|ref|XP_002528346.1| Auxin-responsive protein IAA13, putative [Ricinus communis] gi|223532214|gb|EEF34018.1| Auxin-responsive protein IAA13, putative [Ricinus communis]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 178/246 (72%), Positives = 201/246 (81%), Gaps = 10/246 (4%)

Query: 57  SSWGECGRILTAKDFPSAGRRP------SNASSSSPPVA--VSGTKRAANSVPREGESSP 108
           ++WGECGRILTAKDFPS   +P      SN  +++  VA  VSGTKRAA+SV  EG  SP
Sbjct: 75  NAWGECGRILTAKDFPSVVSQPIRCNNNSNKGTATACVAGAVSGTKRAADSVSHEG-GSP 133

Query: 109 PSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFS 168
            +ASQ+VGWPP+  YR+NSLVNQAKA  SEE+K   E+DKSKDASKK ICNG+KTN   +
Sbjct: 134 TAASQIVGWPPVRTYRINSLVNQAKASRSEEDKSVVEQDKSKDASKK-ICNGSKTNATNN 192

Query: 169 EKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKA 228
           EK HLGFVKVNMDG+PIGRKVDLNAHASYE+LAQTLE+MFF STP+INS GGEK  +TK 
Sbjct: 193 EKGHLGFVKVNMDGIPIGRKVDLNAHASYETLAQTLEDMFFRSTPSINSTGGEKQQSTKP 252

Query: 229 FKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDR 288
            KLLDG SEFVLTYEDKEGDWMLVGDVPW MF++SVKRLRIMRTSEANGL PRFQ R  R
Sbjct: 253 SKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLTSVKRLRIMRTSEANGLAPRFQERTGR 312

Query: 289 QRAKPV 294
           QR KP+
Sbjct: 313 QRRKPI 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484337|gb|ABK94046.1| unknown [Populus trichocarpa]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 182/250 (72%), Positives = 202/250 (80%), Gaps = 9/250 (3%)

Query: 51  GKGKVVSSWGECGRILTAKDFPSAGRRPS--NASSSSPPV----AVSGTKRAANSVPREG 104
           GKGK  ++WGECGRILTAKDFPS   +P   N ++S P      AVSGTKRAA+SV  EG
Sbjct: 57  GKGKA-NAWGECGRILTAKDFPSVVSQPQRPNNNNSMPSTCVVGAVSGTKRAADSVSHEG 115

Query: 105 ESSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTN 164
             SP + SQVVGWPPI AYRMNSLV+QAKA  +EE+K   EKDKSK+  KKKICNGNKTN
Sbjct: 116 -GSPTAGSQVVGWPPIRAYRMNSLVSQAKAARAEEDKGIGEKDKSKENLKKKICNGNKTN 174

Query: 165 NIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDL 224
              +EK HLGFVKVNMDGVPIGRKVDLNAHA YE+LAQ LEEMFF ST  INSIGG+K L
Sbjct: 175 ATGNEKGHLGFVKVNMDGVPIGRKVDLNAHACYETLAQALEEMFFRSTTTINSIGGQKPL 234

Query: 225 ATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQP 284
            +K  KLLDG SEFVLTYEDKEGDWMLVGDVPW MF++SVKRLRIMRTSEANGL PR Q 
Sbjct: 235 -SKFSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLTSVKRLRIMRTSEANGLAPRLQD 293

Query: 285 RNDRQRAKPV 294
           RN++QR+KPV
Sbjct: 294 RNEKQRSKPV 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107521|ref|XP_002314509.1| predicted protein [Populus trichocarpa] gi|222863549|gb|EEF00680.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 169/238 (71%), Positives = 185/238 (77%), Gaps = 22/238 (9%)

Query: 57  SSWGECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVG 116
           ++WGECGRILTAKDFPS                     RAA+SV  EG  SP + SQVVG
Sbjct: 61  NAWGECGRILTAKDFPSV--------------------RAADSVSHEG-GSPTAGSQVVG 99

Query: 117 WPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFV 176
           WPPI AYRMNSLV+QAKA  +EEEK   EKDKSK+  KKKICNGNKTN   +EK HLGFV
Sbjct: 100 WPPIRAYRMNSLVSQAKAARAEEEKGIGEKDKSKENLKKKICNGNKTNATGNEKGHLGFV 159

Query: 177 KVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLS 236
           KVNMDGVPIGRKVDLNAHA YE+LAQ LEEMFF ST  INSIGG+K L +K  KLLDG S
Sbjct: 160 KVNMDGVPIGRKVDLNAHACYETLAQALEEMFFRSTTTINSIGGQKPL-SKFSKLLDGSS 218

Query: 237 EFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDRQRAKPV 294
           EFVLTYEDKEGDWMLVGDVPW MF++SVKRLRIMRTSEANGL PR Q RN++QR+KPV
Sbjct: 219 EFVLTYEDKEGDWMLVGDVPWGMFLTSVKRLRIMRTSEANGLAPRLQDRNEKQRSKPV 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099985|ref|XP_002311698.1| predicted protein [Populus trichocarpa] gi|222851518|gb|EEE89065.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/235 (70%), Positives = 179/235 (76%), Gaps = 21/235 (8%)

Query: 60  GECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPP 119
           GE GRILTAKDFPS                     RAA+SV  EG  SP + SQVVGWPP
Sbjct: 45  GERGRILTAKDFPSV--------------------RAADSVSHEG-GSPTAGSQVVGWPP 83

Query: 120 IGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVN 179
           I AYRMNSLVNQAKA  +EE+K   EKD SKD  KKKICNGNKT+   +EK HLGFVKVN
Sbjct: 84  IRAYRMNSLVNQAKAARAEEDKGIGEKDISKDNLKKKICNGNKTSAPSNEKGHLGFVKVN 143

Query: 180 MDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFV 239
           MDG+PIGRKVDLNAHA YE+LAQ LEEMFF S   INSIGGEK   TK  KLLDGLSEF+
Sbjct: 144 MDGIPIGRKVDLNAHACYETLAQALEEMFFRSATTINSIGGEKRQVTKPSKLLDGLSEFL 203

Query: 240 LTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDRQRAKPV 294
           LTYEDKEGDWMLVGDVPW MF++SVKRLRIMRTSEANGL PRFQ RN++QR KPV
Sbjct: 204 LTYEDKEGDWMLVGDVPWGMFLNSVKRLRIMRTSEANGLAPRFQDRNEKQRIKPV 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399894421|gb|AFP54302.1| ARF domain class transcription factor [Pyrus x bretschneideri]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 166/246 (67%), Positives = 187/246 (76%), Gaps = 17/246 (6%)

Query: 58  SWGECGRILTAKDFPS---------AGRRPSNASSSSPPVAVSGTKRAANSVPREGESSP 108
           +WGE GRILTAKDFPS         A  R S+  ++S  VAVSGTKRAA+SVP+EG  SP
Sbjct: 69  AWGERGRILTAKDFPSMMVSHGGSSAASRFSHRPNASAAVAVSGTKRAADSVPQEG-GSP 127

Query: 109 PSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFS 168
            + SQVVGWPPI A RMNSLVNQAK   +E++    EK  SKD SKKKI  G+KT     
Sbjct: 128 TAVSQVVGWPPISAARMNSLVNQAKTARAEDDTAVGEK--SKDTSKKKINVGSKTT--VK 183

Query: 169 EKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKA 228
           EK HLGFVKVNMDG+PIGRKVDLNAH+ YE+LAQTLEEMF + T AI   GG+ + A K 
Sbjct: 184 EKGHLGFVKVNMDGIPIGRKVDLNAHSCYETLAQTLEEMFISPTTAI---GGDTEQAKKP 240

Query: 229 FKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDR 288
            KLLDG SEFVLTYEDKEGDWMLVGDVPW MF+ SVKRLRIMRTSEANGL PRFQ R++R
Sbjct: 241 SKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEANGLAPRFQERSER 300

Query: 289 QRAKPV 294
           QR KP+
Sbjct: 301 QRNKPI 306

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398577|gb|ADL36583.1| ARF domain class transcription factor [Malus x domestica]

 Score =  306 bits (783), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 163/246 (66%), Positives = 185/246 (75%), Gaps = 17/246 (6%)

Query: 58  SWGECGRILTAKDFPS---------AGRRPSNASSSSPPVAVSGTKRAANSVPREGESSP 108
           +WGE GRILTAKD PS         A  R S+  ++S  VAVSGTKRAA+S P+EG  SP
Sbjct: 69  AWGERGRILTAKDLPSMVVSRGASSAASRFSHRPNASAAVAVSGTKRAADSAPQEG-GSP 127

Query: 109 PSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFS 168
            + SQVVGWPPI A RMNSLVNQAK   +E++    EK  SKD SKKKI  G+KT     
Sbjct: 128 TAVSQVVGWPPISAARMNSLVNQAKTARAEDDTAVGEK--SKDTSKKKINVGSKTT--VK 183

Query: 169 EKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKA 228
           EK HLGFVKVNMDG+PIGRKVDLNAH+ YE+LAQTLEEMF + T    +IGG+ + A K 
Sbjct: 184 EKGHLGFVKVNMDGIPIGRKVDLNAHSCYETLAQTLEEMFISPT---TTIGGDTEQAKKP 240

Query: 229 FKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDR 288
            KLLDG SEFVLTYEDKEGDWMLVGDVPW MF+ SVKRLRIMRTSEANGL PRFQ R++R
Sbjct: 241 SKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEANGLAPRFQERSER 300

Query: 289 QRAKPV 294
           QR KP+
Sbjct: 301 QRNKPI 306

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477690|ref|XP_002285483.2| PREDICTED: auxin-responsive protein IAA13-like isoform 2 [Vitis vinifera]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/248 (65%), Positives = 186/248 (75%), Gaps = 14/248 (5%)

Query: 57  SSWGECGRILTAKDFPSAGRRPSNASSSSPPVA------VSGTKRAANSVPREGESSPPS 110
           S+WGE GRILTAKDFPS     SNASS++P  +      VSGTKRAA+S   +   S  +
Sbjct: 78  SAWGEYGRILTAKDFPSVL---SNASSTAPRFSNSSAGPVSGTKRAADSAVSQEVGSATA 134

Query: 111 ASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNG-NKTNNIFSE 169
           ASQVVGWPPI AYRMNSLVNQAKA  +E++K   E DK KD  KKK   G NK N+   E
Sbjct: 135 ASQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKE 194

Query: 170 KAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFF---ASTPAINSIGGEKDLAT 226
           K HLGFVKVNMDG+PIGRKVDL+AHA Y +LAQTLE+MFF    + P I S   EK  +T
Sbjct: 195 KGHLGFVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFFRHNTTMPPIRS-DVEKGQST 253

Query: 227 KAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRN 286
              KLLDG SEFVLTYEDKEGDWMLVGDVPW MF+S+VKRLRIMRTSEANGL PRFQ R+
Sbjct: 254 NPSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLSTVKRLRIMRTSEANGLAPRFQERS 313

Query: 287 DRQRAKPV 294
           +RQR+KP+
Sbjct: 314 ERQRSKPI 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326560|gb|AFZ78620.1| hypothetical protein [Populus tomentosa]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/268 (62%), Positives = 179/268 (66%), Gaps = 54/268 (20%)

Query: 60  GECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPP 119
           GE GRILTAKDFPS                     RAA+SV  EG  SP + SQVVGWPP
Sbjct: 45  GERGRILTAKDFPSV--------------------RAADSVSHEG-GSPTAGSQVVGWPP 83

Query: 120 IGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVN 179
           I AYRMNSLVNQAKA  +EE+K   EKD SKD  KKKICNGNKT+   +EK HLGFVKVN
Sbjct: 84  IRAYRMNSLVNQAKAARAEEDKGIGEKDISKDNLKKKICNGNKTSAPSNEKGHLGFVKVN 143

Query: 180 MDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFV 239
           MDG+PIGRKVDLNAHA YE+LAQ LEEMF  S   INSIGGEK   TK  KLLDGLSEFV
Sbjct: 144 MDGIPIGRKVDLNAHACYETLAQALEEMFLRSATTINSIGGEKRQVTKPSKLLDGLSEFV 203

Query: 240 LTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLG-------------------- 279
           LTYEDKEGDWMLVGDVPW MF++SVKRLRIMRTSEANGLG                    
Sbjct: 204 LTYEDKEGDWMLVGDVPWGMFLNSVKRLRIMRTSEANGLGMQNFQSTVLCPLASFPTYFC 263

Query: 280 -------------PRFQPRNDRQRAKPV 294
                        PRFQ RN++QR KPV
Sbjct: 264 FSLHSKTYSLIAAPRFQDRNEKQRIKPV 291

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083735|emb|CBI23724.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/248 (65%), Positives = 186/248 (75%), Gaps = 14/248 (5%)

Query: 57  SSWGECGRILTAKDFPSAGRRPSNASSSSPPVA------VSGTKRAANSVPREGESSPPS 110
           S+WGE GRILTAKDFPS     SNASS++P  +      VSGTKRAA+S   +   S  +
Sbjct: 40  SAWGEYGRILTAKDFPSVL---SNASSTAPRFSNSSAGPVSGTKRAADSAVSQEVGSATA 96

Query: 111 ASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNG-NKTNNIFSE 169
           ASQVVGWPPI AYRMNSLVNQAKA  +E++K   E DK KD  KKK   G NK N+   E
Sbjct: 97  ASQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKE 156

Query: 170 KAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFF---ASTPAINSIGGEKDLAT 226
           K HLGFVKVNMDG+PIGRKVDL+AHA Y +LAQTLE+MFF    + P I S   EK  +T
Sbjct: 157 KGHLGFVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFFRHNTTMPPIRS-DVEKGQST 215

Query: 227 KAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRN 286
              KLLDG SEFVLTYEDKEGDWMLVGDVPW MF+S+VKRLRIMRTSEANGL PRFQ R+
Sbjct: 216 NPSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLSTVKRLRIMRTSEANGLAPRFQERS 275

Query: 287 DRQRAKPV 294
           +RQR+KP+
Sbjct: 276 ERQRSKPI 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433277|ref|XP_002285481.1| PREDICTED: auxin-responsive protein IAA13-like isoform 1 [Vitis vinifera]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 184/246 (74%), Gaps = 17/246 (6%)

Query: 57  SSWGECGRILTAKDFPSAGRRPSNASSSSPPVA------VSGTKRAANS-VPREGESSPP 109
           S+WGE GRILTAKDFPS     SNASS++P  +      VSGTKRAA+S V +E  S+  
Sbjct: 78  SAWGEYGRILTAKDFPSVL---SNASSTAPRFSNSSAGPVSGTKRAADSAVSQEVGSATA 134

Query: 110 SASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNG-NKTNNIFS 168
           ++SQVVGWPPI AYRMNSLVNQAKA  +E++K   E DK KD  KKK   G NK N+   
Sbjct: 135 ASSQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVK 194

Query: 169 EKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKA 228
           EK HLGFVKVNMDG+PIGRKVDL+AHA Y +LAQTLE+MFF     +         +T  
Sbjct: 195 EKGHLGFVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFFRHNTTM------PRQSTNP 248

Query: 229 FKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPRFQPRNDR 288
            KLLDG SEFVLTYEDKEGDWMLVGDVPW MF+S+VKRLRIMRTSEANGL PRFQ R++R
Sbjct: 249 SKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLSTVKRLRIMRTSEANGLAPRFQERSER 308

Query: 289 QRAKPV 294
           QR+KP+
Sbjct: 309 QRSKPI 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2051154	247	IAA13 "auxin-induced protein 1	0.653	0.777	0.579	2.6e-57
TAIR|locus:2197838	239	IAA12 "indole-3-acetic acid in	0.646	0.794	0.569	4.2e-53
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.564	0.549	0.5	5.5e-38
TAIR|locus:2020255	261	IAA10 "indoleacetic acid-induc	0.622	0.701	0.463	1.3e-34
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.448	0.543	0.466	2.6e-32
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.367	0.473	0.531	4.3e-32
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.384	0.484	0.508	9.9e-31
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.360	0.347	0.531	2.6e-30
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.391	0.340	0.487	4.2e-30
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.357	0.458	0.486	5.3e-30

TAIR|locus:2051154 IAA13 "auxin-induced protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
 Identities = 117/202 (57%), Positives = 138/202 (68%)

Query:    93 TKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPIXXXXXXXXXXXXXXXX 152
             +KRAA+S    G S P S+SQVVGWPPIG++RMNSLVN  +A                  
Sbjct:    56 SKRAADSASHAGSSPPRSSSQVVGWPPIGSHRMNSLVNN-QATKSAREEEEAGKKKVKDD 114

Query:   153 XXXXICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFAST 212
                 +    K N     K  +GF+KVNMDGV IGRKVDLNAH+SYE+LAQTLE+MFF + 
Sbjct:   115 EPKDVTK--KVNG----KVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTN 168

Query:   213 PAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRT 272
             P   ++G      TK  +LLDG SEFVLTYEDKEGDWMLVGDVPWRMFI+SVKRLR+M+T
Sbjct:   169 PG--TVGLTSQF-TKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKT 225

Query:   273 SEANGLGPRFQPRNDRQRAKPV 294
             SEANGL  R Q  N+RQR +PV
Sbjct:   226 SEANGLAARNQEPNERQRKQPV 247

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2197838 IAA12 "indole-3-acetic acid inducible 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 115/202 (56%), Positives = 132/202 (65%)

Query:    93 TKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPIXXXXXXXXXXXXXXXX 152
             +KR+A S   +G +SPP +SQVVGWPPIG +RMNSLVN                      
Sbjct:    50 SKRSAESSSHQG-ASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKND 108

Query:   153 XXXXICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFAST 212
                 +    K N    +   LGFVKVNMDGV IGRKVD+ AH+SYE+LAQTLEEMFF  T
Sbjct:   109 ELKDV--SMKVN---PKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMT 163

Query:   213 PAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRT 272
                 +   EK    K  +LLDG S+FVLTYEDKEGDWMLVGDVPWRMFI+SVKRLRIM T
Sbjct:   164 ---GTTCREK---VKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGT 217

Query:   273 SEANGLGPRFQPRNDRQRAKPV 294
             SEA+GL PR Q + DRQR  PV
Sbjct:   218 SEASGLAPRRQEQKDRQRNNPV 239

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048364 "root development" evidence=IMP

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 89/178 (50%), Positives = 110/178 (61%)

Query:   100 VPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPIXXXXXXXXXXXXXXXXXXXXICN 159
             + R  +S   ++ QVVGWPPI  YRMNS+VNQAKA                        N
Sbjct:    75 IKRTADSMAATSGQVVGWPPIRTYRMNSMVNQAKA----------SATEDPNLEISQAVN 124

Query:   160 GNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIG 219
              N++++  ++  +  FVKV MDG+PIGRK+DLNAH  YESL+ TLEEMF        ++ 
Sbjct:   125 KNRSDS--TKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLE 182

Query:   220 GEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANG 277
              +  + T    L DG S  VLTYEDKEGDWMLVGDVPW MFI SV+RLRIM+TSEA G
Sbjct:   183 TDGHMETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATG 240

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2020255 IAA10 "indoleacetic acid-induced protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 88/190 (46%), Positives = 113/190 (59%)

Query:    93 TKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPIXXXXXXXXXXXXXXXX 152
             TKR+A+S P    +S  +    VGWPP+  YR+NSLVNQAK+ +                
Sbjct:    75 TKRSADSSP--AAASNATRQVAVGWPPLRTYRINSLVNQAKS-LATEGGLSSGIQKETTK 131

Query:   153 XXXXICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFA-S 211
                     +    I S +  +  VKV MDGV IGRKVDLNA  SY +L +TL+ MFF   
Sbjct:   132 SVVVAAKNDDACFIKSSRTSM-LVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIP 190

Query:   212 TPAINS-IGGEKDLA-TKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRI 269
             +P   S   G K +  T   KLLDG SE+++TY+DK+GDWMLVGDVPW+MF+ SV RLRI
Sbjct:   191 SPVTRSNTQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRI 250

Query:   270 MRTSEANGLG 279
             M+TS   G+G
Sbjct:   251 MKTSIGAGVG 260

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 63/135 (46%), Positives = 82/135 (60%)

Query:   159 NGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSI 218
             +  K  N     A  G VKV+MDG P  RKVDL  + SY+ L+  L +MF + T      
Sbjct:   110 SSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGA 169

Query:   219 GGEKDLATKAFKLLDGL--SEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEAN 276
              G  D   ++ KL++ L  SE+V +YEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA 
Sbjct:   170 QGMIDFMNES-KLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAV 228

Query:   277 GLGPRFQPRNDRQRA 291
             GL PR   +  + R+
Sbjct:   229 GLAPRAMEKYCKNRS 243

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 59/111 (53%), Positives = 75/111 (67%)

Query:   173 LGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLL 232
             + FVKV+MDG P  RKVDL  + SY+ L+  L +MF + T       G  D   ++ K++
Sbjct:   110 VAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNES-KVM 168

Query:   233 DGL--SEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPR 281
             D L  SE+V +YEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GL PR
Sbjct:   169 DLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPR 219

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 275 (101.9 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 60/118 (50%), Positives = 76/118 (64%)

Query:   165 NIFSEKAHLG-FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKD 223
             N+ +EK      VKV+MDG P  RK+D+  + SY  L+   + MF + T  I   G  + 
Sbjct:   113 NVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFT--IGKCGSHQQ 170

Query:   224 LATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPR 281
             L  ++ KL D L E+V TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GL PR
Sbjct:   171 LK-ESNKLRDDL-EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPR 226

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 59/111 (53%), Positives = 76/111 (68%)

Query:   175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPA-INSIGG-EKDLATKAFKLL 232
             +VKV+M+G P  RK+DL  + SY  L+  LE+MF   T     S GG  +D   ++ +L 
Sbjct:   187 YVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNES-RLT 245

Query:   233 DGL--SEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPR 281
             D L  SE+V+TYEDK+ DWMLVGDVPW MFI S K+LRIM++SEA GL PR
Sbjct:   246 DLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPR 296

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 60/123 (48%), Positives = 79/123 (64%)

Query:   175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPA---INSIGGEKDLA-TKAFK 230
             FVKV+MDG P  RKVDL ++ +Y  L+  LE+MF   T      N   G+  L+ TK   
Sbjct:   218 FVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKD 277

Query:   231 LLDGLSEFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLG--PRFQPRNDR 288
             LL+G  ++VLTYEDK+GDWMLVGDVPW MFI   K+L+IM+  +A GL   PR   ++ +
Sbjct:   278 LLNG-KDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKS-K 335

Query:   289 QRA 291
              RA
Sbjct:   336 MRA 338

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 54/111 (48%), Positives = 75/111 (67%)

Query:   175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLAT--KAFKLL 232
             FVKV+MDG P  RK+DL  + SY+ L+  L  MF + T  +   GGE+ +       KL+
Sbjct:   112 FVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFT--MGKHGGEEGMIDFMNERKLM 169

Query:   233 DGLS--EFVLTYEDKEGDWMLVGDVPWRMFISSVKRLRIMRTSEANGLGPR 281
             D ++  ++V +YEDK+GDWMLVGDVPW MF+ + KRLR+M+ S+A GL PR
Sbjct:   170 DLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPR 220

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38831	IAA13_ARATH	No assigned EC number	0.5787	0.6802	0.8097	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.4624.1 SubName- Full=Putative uncharacterized protein; (265 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	2e-53

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  172 bits (437), Expect = 2e-53
 Identities = 79/203 (38%), Positives = 97/203 (47%), Gaps = 52/203 (25%)

Query: 79  SNASSSSPPVAVSGTKRAANSVPREGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPISE 138
                 S  +     K   +       + PP+ +QVVGWPP+ +YR NSL          
Sbjct: 37  VTEDGISSSLGED--KSTISVSSNGDSAKPPAKAQVVGWPPVRSYRKNSL---------- 84

Query: 139 EEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMDGVPIGRKVDLNAHASYE 198
                                         EK    +VKV+MDG P  RKVDL  + SY+
Sbjct: 85  -----------------------------REKKSGSYVKVSMDGAPYLRKVDLKMYKSYD 115

Query: 199 SLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWR 258
            L+  LE+MF   T     IG    L      LL+G SE+V TYEDK+GDWMLVGDVPW 
Sbjct: 116 ELSSALEKMFSCFT-----IGESGLL-----DLLNG-SEYVPTYEDKDGDWMLVGDVPWE 164

Query: 259 MFISSVKRLRIMRTSEANGLGPR 281
           MF+ S KRLRIM+ SEA GL PR
Sbjct: 165 MFVESCKRLRIMKGSEAIGLAPR 187

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.27
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.97
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.88
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.8
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.77
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.38
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.74
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.43
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	94.87
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.79
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	94.31
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	92.59
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	90.39

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=9.2e-63  Score=441.58  Aligned_cols=207  Identities=44%  Similarity=0.661  Sum_probs=6.0

Q ss_pred             cCCccceecccccCcCCCC------CCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC
Q 022632           29 VESDDDELELGLGLSLGGV------GGGGKGKVVSSWGECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRAANSVPR  102 (294)
Q Consensus        29 ~~~~eTEL~LGLpgs~gg~------~~~~k~~~krgfset~dlL~~k~~~~~~~~~~~~sss~~~~~~~~~k~~~~~~~~  102 (294)
                      |+|++|||||||||+....      ........||+|+++++.-.......... .... ....   ... .........
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~-~~~~-~~~~---~~~-~~~~~~~~~   74 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSS-SSDS-SSSS---SSS-STSSSSSDS   74 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhccccccccccc-cccc-Cccc---ccc-ccccccccc
Confidence            6899999999999963211      00224456999999888743221111000 0000 0000   000 000111112


Q ss_pred             CCCCCCCCCCCcccCCCchhhhhhhcccccCCCCchhhhhhhcccccchhhhhhhcCCCCCccccccccccceeEEEecC
Q 022632          103 EGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMDG  182 (294)
Q Consensus       103 ~~~~p~a~~aqVVGWPPVRS~RkN~~~~q~k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fVKV~MdG  182 (294)
                      +...+|+.++|||||||||+||+|++...+..                                    ..++||||+|||
T Consensus        75 ~~~~~p~~~~~~vgwpp~~s~r~n~~~~~~~~------------------------------------~~~~~vKV~mdG  118 (215)
T PF02309_consen   75 SSSSPPASKAQVVGWPPVRSFRKNSLSEKQSS------------------------------------SSRSYVKVNMDG  118 (215)
T ss_dssp             -----------BTTBS----S-----------------------------------------------------------
T ss_pred             ccCCCCcccccccCCCcccccccccccccccc------------------------------------cCCceeEEEecC
Confidence            33344544499999999999999998721100                                    114899999999


Q ss_pred             cccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcC--CCCceEEEEEcCCCCeEEccCCChHHH
Q 022632          183 VPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLD--GLSEFVLTYEDKEGDWMLVGDVPWRMF  260 (294)
Q Consensus       183 ~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d--~~seyvltYeD~eGDwMLVGDvPWemF  260 (294)
                      +||||||||++|+||++|+.+|++||.+|.+.+++.     +..++.++++  ++++|+|||||+||||||||||||+||
T Consensus       119 ~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F  193 (215)
T PF02309_consen  119 VPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGS-----HGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEF  193 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceecCHHHhhCHHHHHHHHHHhcCCCCcccccc-----ccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHH
Confidence            999999999999999999999999998887665533     2223334444  456999999999999999999999999


Q ss_pred             hhccceeEEecCCccCCCCCCC
Q 022632          261 ISSVKRLRIMRTSEANGLGPRF  282 (294)
Q Consensus       261 v~svKRLrImk~sea~gl~~~~  282 (294)
                      |++|||||||+.+|+++|+||+
T Consensus       194 ~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  194 VKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             ----------------------
T ss_pred             HHHhhccEEecHHHhcccCCCC
Confidence            9999999999999999999986

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.27  E-value=0.00067  Score=51.48  Aligned_cols=67  Identities=28%  Similarity=0.421  Sum_probs=54.4

Q ss_pred             eeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC
Q 022632          175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD  254 (294)
Q Consensus       175 fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD  254 (294)
                      -|||...|. +=|.+.+..--+|++|...|++.|..     .                  ...+.|.|.|.||||..+-+
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~-----~------------------~~~~~l~Y~D~dgD~V~i~s   58 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL-----L------------------DEDFQLKYKDEDGDLVTISS   58 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT-----S------------------TSSEEEEEEETTSSEEEESS
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC-----C------------------CccEEEEeeCCCCCEEEeCC
Confidence            489999996 43458888888999999999999961     1                  14789999999999998884


Q ss_pred             -CChHHHhhccc
Q 022632          255 -VPWRMFISSVK  265 (294)
Q Consensus       255 -vPWemFv~svK  265 (294)
                       .=|++.++.++
T Consensus        59 d~Dl~~a~~~~~   70 (84)
T PF00564_consen   59 DEDLQEAIEQAK   70 (84)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence             56888888875

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.97  E-value=0.003  Score=50.94  Aligned_cols=68  Identities=22%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             eeEEEecCcccceeeecC---CCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEE
Q 022632          175 FVKVNMDGVPIGRKVDLN---AHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWML  251 (294)
Q Consensus       175 fVKV~MdG~pigRKVDL~---~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwML  251 (294)
                      -|||..+|.-+=-++++.   ..-+|++|.+.+.+.|.     +.                 ...+|+|.|.|.||||..
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~-----l~-----------------~~~~~~l~Y~Dedgd~V~   59 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFS-----LS-----------------PDADLSLTYTDEDGDVVT   59 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhC-----CC-----------------CCCcEEEEEECCCCCEEE
Confidence            489999997544455553   46799999999999996     22                 125899999999999999


Q ss_pred             ccCCChHHHhhccce
Q 022632          252 VGDVPWRMFISSVKR  266 (294)
Q Consensus       252 VGDvPWemFv~svKR  266 (294)
                      +-+.  ++|...+.+
T Consensus        60 l~~D--~DL~~a~~~   72 (91)
T cd06398          60 LVDD--NDLTDAIQY   72 (91)
T ss_pred             EccH--HHHHHHHHH
Confidence            8766  666666554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>smart00666 PB1 PB1 domain

Probab=96.88  E-value=0.0061  Score=46.20  Aligned_cols=66  Identities=23%  Similarity=0.376  Sum_probs=51.6

Q ss_pred             eeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC
Q 022632          175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD  254 (294)
Q Consensus       175 fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD  254 (294)
                      =|||.-.|  --|.+-+..--+|++|...|.+.|.     ..                  ...|.|.|+|.||||..+-+
T Consensus         3 ~vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~-----~~------------------~~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        3 DVKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFG-----LD------------------NQSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             cEEEEECC--EEEEEEECCCCCHHHHHHHHHHHhC-----CC------------------CCCeEEEEECCCCCEEEecC
Confidence            36777754  3577788888999999999999996     21                  14689999999999997764


Q ss_pred             -CChHHHhhccc
Q 022632          255 -VPWRMFISSVK  265 (294)
Q Consensus       255 -vPWemFv~svK  265 (294)
                       .=|++.++.++
T Consensus        58 d~Dl~~a~~~~~   69 (81)
T smart00666       58 DEDLEEAIEEYD   69 (81)
T ss_pred             HHHHHHHHHHHH
Confidence             67887777666

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.80  E-value=0.0053  Score=48.49  Aligned_cols=56  Identities=23%  Similarity=0.406  Sum_probs=43.7

Q ss_pred             eeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC
Q 022632          175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD  254 (294)
Q Consensus       175 fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD  254 (294)
                      -|||...|.  -+.+-|..--+|++|...+.++|.     +.                 ....|.|.|.|.||||.++--
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~-----~~-----------------~~~~f~LkY~Ddegd~v~lts   57 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFK-----LD-----------------DMSAFDLKYLDDDEEWVLLTC   57 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhC-----CC-----------------CCCeeEEEEECCCCCeEEeec
Confidence            389999886  345556666699999999999996     21                 125799999999999998753

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.77  E-value=0.0083  Score=45.16  Aligned_cols=66  Identities=26%  Similarity=0.382  Sum_probs=51.1

Q ss_pred             eeEEEecCcccceeeecC-CCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632          175 FVKVNMDGVPIGRKVDLN-AHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG  253 (294)
Q Consensus       175 fVKV~MdG~pigRKVDL~-~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG  253 (294)
                      -|||+-.|.  =|.+=+. ..-+|++|...|.+.|.     ..                  ...+.+.|.|.||||..+.
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~-----~~------------------~~~~~l~y~D~e~d~v~l~   56 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFG-----LD------------------AVSFKLKYPDEDGDLVTIS   56 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhC-----CC------------------CCcEEEEeeCCCCCEEEeC
Confidence            378888764  2455555 88899999999999996     21                  0368999999999999998


Q ss_pred             C-CChHHHhhccc
Q 022632          254 D-VPWRMFISSVK  265 (294)
Q Consensus       254 D-vPWemFv~svK  265 (294)
                      + .=|++.++.++
T Consensus        57 sd~Dl~~a~~~~~   69 (81)
T cd05992          57 SDEDLEEAIEEAR   69 (81)
T ss_pred             CHHHHHHHHHHHh
Confidence            7 67777777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.38  E-value=0.012  Score=46.86  Aligned_cols=62  Identities=18%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc-C
Q 022632          176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG-D  254 (294)
Q Consensus       176 VKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG-D  254 (294)
                      |||...|.-+=-+++-+..-+|++|...+.++|.     +.                    .|.|.|-|.||||.++= |
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~-----l~--------------------~f~lKYlDde~e~v~lssd   57 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG-----LN--------------------DIQIKYVDEENEEVSVNSQ   57 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC-----CC--------------------cceeEEEcCCCCEEEEEch
Confidence            7899999877777777778899999999999995     21                    57899999999998874 3


Q ss_pred             CChHHHhh
Q 022632          255 VPWRMFIS  262 (294)
Q Consensus       255 vPWemFv~  262 (294)
                      .=-++.+.
T Consensus        58 ~eLeE~~r   65 (81)
T cd06396          58 GEYEEALK   65 (81)
T ss_pred             hhHHHHHH
Confidence            33344433

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.74  E-value=0.053  Score=43.30  Aligned_cols=68  Identities=25%  Similarity=0.359  Sum_probs=49.1

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc-C
Q 022632          176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG-D  254 (294)
Q Consensus       176 VKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG-D  254 (294)
                      ||...|..=-=-.+|.....+|++++.-|+.||.     +.                  .-.|+|.|.|.+||.+=+- |
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~-----l~------------------~~~f~i~Y~D~~gDLLPInND   59 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHH-----IP------------------NVDFLIGYTDPHGDLLPINND   59 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhC-----CC------------------CCcEEEEEeCCCCCEecccCc
Confidence            5555555422224555567999999999999996     32                  1478999999999999775 5


Q ss_pred             CChHHHhhccce
Q 022632          255 VPWRMFISSVKR  266 (294)
Q Consensus       255 vPWemFv~svKR  266 (294)
                      +-+..=++++++
T Consensus        60 dNf~kAlssa~p   71 (80)
T cd06403          60 DNFLKALSSANP   71 (80)
T ss_pred             HHHHHHHHcCCC
Confidence            666666667773

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.43  E-value=0.078  Score=42.42  Aligned_cols=72  Identities=18%  Similarity=0.456  Sum_probs=48.6

Q ss_pred             eEEEecCcccceeeecCCCC-ChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC
Q 022632          176 VKVNMDGVPIGRKVDLNAHA-SYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD  254 (294)
Q Consensus       176 VKV~MdG~pigRKVDL~~~~-sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD  254 (294)
                      +|+...+ .| |++=+..-. +|.+|...+.+.|..-    .                .....+.+.|.|.|||+.-|-+
T Consensus         3 iK~~~g~-Di-R~~~~~~~~~t~~~L~~~v~~~F~~~----~----------------~~~~~flIKYkD~dGDlVTIts   60 (81)
T cd06401           3 LKAQLGD-DI-RRIPIHNEDITYDELLLMMQRVFRGK----L----------------GSSDDVLIKYKDEDGDLITIFD   60 (81)
T ss_pred             EEEEeCC-eE-EEEeccCccccHHHHHHHHHHHhccc----c----------------CCcccEEEEEECCCCCEEEecc
Confidence            6777655 35 444444323 9999999999999620    0                1235789999999999999987


Q ss_pred             C---ChHHHhhccceeEE
Q 022632          255 V---PWRMFISSVKRLRI  269 (294)
Q Consensus       255 v---PWemFv~svKRLrI  269 (294)
                      .   -|-.=+...+||+|
T Consensus        61 ~~dL~~A~~~~~~~~l~~   78 (81)
T cd06401          61 SSDLSFAIQCSRILKLTL   78 (81)
T ss_pred             HHHHHHHHhcCcceEEEE
Confidence            4   44433444455555

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.87  E-value=0.085  Score=42.39  Aligned_cols=57  Identities=25%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             eeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC
Q 022632          175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD  254 (294)
Q Consensus       175 fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD  254 (294)
                      -||++..|.-.--.+|.  .-+|++|.+.+.+||..     .                 ....|++.|.|.|||-.-+..
T Consensus         2 ~~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-----~-----------------~~q~ft~kw~DEEGDp~tiSS   57 (83)
T cd06404           2 RVKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-----H-----------------NDQPFTLKWIDEEGDPCTISS   57 (83)
T ss_pred             eEEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-----C-----------------CCCcEEEEEECCCCCceeecC
Confidence            37889999755555665  77899999999999962     1                 125789999999999887765


Q ss_pred             C
Q 022632          255 V  255 (294)
Q Consensus       255 v  255 (294)
                      .
T Consensus        58 ~   58 (83)
T cd06404          58 Q   58 (83)
T ss_pred             H
Confidence            3

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.79  E-value=0.06  Score=43.31  Aligned_cols=51  Identities=25%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             cccceeeecC--CCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632          183 VPIGRKVDLN--AHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG  253 (294)
Q Consensus       183 ~pigRKVDL~--~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG  253 (294)
                      .|-||.+=++  ...||.+|..++.+=|.     +.       +.        ....|.|.|.|.||||.|+-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~-----~d-------~~--------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLG-----DD-------DF--------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhC-----Cc-------cc--------cCCcccEEEEcCCCCEEEEe
Confidence            3566655444  47899999999999995     22       00        12578999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=94.31  E-value=0.2  Score=40.44  Aligned_cols=59  Identities=25%  Similarity=0.380  Sum_probs=42.8

Q ss_pred             eeEEEecC---cccceeeec--CCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCe
Q 022632          175 FVKVNMDG---VPIGRKVDL--NAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDW  249 (294)
Q Consensus       175 fVKV~MdG---~pigRKVDL--~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDw  249 (294)
                      +||.+..|   .+==|++=|  ...-+|++|...+.++|..    .                  ....|+|.|.|.|||.
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~----l------------------~~~~ftlky~DeeGDl   59 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS----L------------------RGKNFQLFWKDEEGDL   59 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc----c------------------CCCcEEEEEECCCCCE
Confidence            57777766   222254444  5667999999999999951    1                  1157999999999999


Q ss_pred             EEccCC
Q 022632          250 MLVGDV  255 (294)
Q Consensus       250 MLVGDv  255 (294)
                      .-+-..
T Consensus        60 vtIssd   65 (87)
T cd06402          60 VAFSSD   65 (87)
T ss_pred             EeecCH
Confidence            887753

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=92.59  E-value=0.44  Score=38.29  Aligned_cols=66  Identities=23%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC-
Q 022632          176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD-  254 (294)
Q Consensus       176 VKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD-  254 (294)
                      -||+.+|  -.|++....-=+|..|...|+.+|.     +.    .              -.+.|+|.|.|||..-+-| 
T Consensus         3 fKv~~~g--~~RRf~~~~~pt~~~L~~kl~~Lf~-----lp----~--------------~~~~vtYiDeD~D~ITlssd   57 (82)
T cd06397           3 FKSSFLG--DTRRIVFPDIPTWEALASKLENLYN-----LP----E--------------IKVGVTYIDNDNDEITLSSN   57 (82)
T ss_pred             EEEEeCC--ceEEEecCCCccHHHHHHHHHHHhC-----CC----h--------------hHeEEEEEcCCCCEEEecch
Confidence            3777777  3688888888899999999999997     32    0              1279999999999886554 


Q ss_pred             CChHHHhhccce
Q 022632          255 VPWRMFISSVKR  266 (294)
Q Consensus       255 vPWemFv~svKR  266 (294)
                      .=-++|.+-..|
T Consensus        58 ~eL~d~~~~~~~   69 (82)
T cd06397          58 KELQDFYRLSHR   69 (82)
T ss_pred             HHHHHHHHhccc
Confidence            556666664444

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=90.39  E-value=1  Score=36.41  Aligned_cols=65  Identities=18%  Similarity=0.338  Sum_probs=49.0

Q ss_pred             ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632          174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG  253 (294)
Q Consensus       174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG  253 (294)
                      .-|||+-.|.  .|-|-+..-=+|++|...+.++|.     +.                   ..++|-|.|. ||..-++
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~-----~~-------------------~~~~iKykDE-GD~iti~   55 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFG-----FK-------------------RRLKIKMKDD-GDMITMG   55 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhC-----CC-------------------CceEEEEEcC-CCCcccc
Confidence            4689998887  466666666779999999999995     21                   3679999999 9999888


Q ss_pred             CC-ChHHHhhccc
Q 022632          254 DV-PWRMFISSVK  265 (294)
Q Consensus       254 Dv-PWemFv~svK  265 (294)
                      |. =-++-+.++|
T Consensus        56 sq~DLd~Ai~~a~   68 (86)
T cd06408          56 DQDDLDMAIDTAR   68 (86)
T ss_pred             CHHHHHHHHHHHH
Confidence            73 3344455544

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.92
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.84
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.14
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	92.49
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	89.91

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.92  E-value=0.016  Score=45.64  Aligned_cols=57  Identities=23%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632          174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG  253 (294)
Q Consensus       174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG  253 (294)
                      .=|||+..|.-+  .+.+...-+|++|...|.++|.     +.                 ....+++.|.|.|||+.-+-
T Consensus         7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~-----~~-----------------~~~~f~lky~DEeGD~itis   62 (89)
T 1vd2_A            7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCS-----FD-----------------NEQLFTMKWIDEEGDPCTVS   62 (89)
T ss_dssp             EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTT-----CC-----------------SSCCEEEEECCSSSCCEECC
T ss_pred             EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhC-----CC-----------------CCCeEEEEEECCCCCccccc
Confidence            689999999744  4444446699999999999996     21                 12468999999999997765


Q ss_pred             C
Q 022632          254 D  254 (294)
Q Consensus       254 D  254 (294)
                      .
T Consensus        63 S   63 (89)
T 1vd2_A           63 S   63 (89)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.84  E-value=0.031  Score=43.97  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=52.5

Q ss_pred             cceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEc
Q 022632          173 LGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLV  252 (294)
Q Consensus       173 ~~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLV  252 (294)
                      ..-||...|..--=-.||-....+|++|..-|+++|.     +.                  ..+|++.|.|.|||++=+
T Consensus         6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~-----L~------------------~~~f~i~Y~D~dGDLlpI   62 (86)
T 1wmh_B            6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ-----IP------------------GLDVLLGYTDAHGDLLPL   62 (86)
T ss_dssp             EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT-----CT------------------TCCCEEEEECTTSCEEEC
T ss_pred             EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC-----CC------------------CCCEEEEEECCCCCEeee
Confidence            3678888888743335565677899999999999995     21                  146899999999999988


Q ss_pred             cCC-ChHHHhhccc
Q 022632          253 GDV-PWRMFISSVK  265 (294)
Q Consensus       253 GDv-PWemFv~svK  265 (294)
                      =+. -..+=+.++|
T Consensus        63 nnDdnl~~Al~~a~   76 (86)
T 1wmh_B           63 TNDDSLHRALASGP   76 (86)
T ss_dssp             CSHHHHHHHTTSSS
T ss_pred             cCHHHHHHHHHhCC
Confidence            754 4445556666

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.14  E-value=0.09  Score=42.29  Aligned_cols=60  Identities=20%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             ceeEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCce
Q 022632          174 GFVKVNMDGV----PIGRKVDLNA-----------HASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEF  238 (294)
Q Consensus       174 ~fVKV~MdG~----pigRKVDL~~-----------~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~sey  238 (294)
                      +-||++..|.    .==|++-|..           ..+|++|...++++|..    +                .  +.+|
T Consensus         6 ~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~----l----------------~--~~~f   63 (102)
T 2kkc_A            6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA----L----------------R--PGGF   63 (102)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S----------------C--SSCE
T ss_pred             EEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc----c----------------C--CCcE
Confidence            6789998752    2336665542           24899999999999961    1                1  2479


Q ss_pred             EEEEEcCCCCeEEccCC
Q 022632          239 VLTYEDKEGDWMLVGDV  255 (294)
Q Consensus       239 vltYeD~eGDwMLVGDv  255 (294)
                      +|.|.|.|||+.-+-+.
T Consensus        64 ~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           64 QAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             EEEEECTTCCEEEECSH
T ss_pred             EEEEECCCCCEEEecCH
Confidence            99999999999888764

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=92.49  E-value=0.26  Score=40.62  Aligned_cols=60  Identities=20%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             ceeEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCce
Q 022632          174 GFVKVNMDGV----PIGRKVDLNA-----------HASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEF  238 (294)
Q Consensus       174 ~fVKV~MdG~----pigRKVDL~~-----------~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~sey  238 (294)
                      +-||++..|.    .==|++-|..           -.+|++|...++++|..    +                .  +..|
T Consensus        21 l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~----L----------------~--~~~f   78 (117)
T 2ktr_A           21 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA----L----------------R--PGGF   78 (117)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S----------------C--SSCE
T ss_pred             EEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc----c----------------C--CCcE
Confidence            7899999741    1226655541           35999999999999951    1                1  2469


Q ss_pred             EEEEEcCCCCeEEccCC
Q 022632          239 VLTYEDKEGDWMLVGDV  255 (294)
Q Consensus       239 vltYeD~eGDwMLVGDv  255 (294)
                      +|.|.|.|||+.-+-..
T Consensus        79 ~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           79 QAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             EEEEECTTCCEEEECSH
T ss_pred             EEEEECCCCCEEEecCH
Confidence            99999999999887754

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=89.91  E-value=0.95  Score=36.22  Aligned_cols=74  Identities=9%  Similarity=0.240  Sum_probs=53.4

Q ss_pred             ceeEEEecCc------ccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCC
Q 022632          174 GFVKVNMDGV------PIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEG  247 (294)
Q Consensus       174 ~fVKV~MdG~------pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eG  247 (294)
                      .-|||+-+..      .=.|.|=+..-=+|++|...+.+-|..+.       ..  +      +   .....|-|+|.||
T Consensus         6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-------~~--~------i---~~~~klkYkDEdG   67 (98)
T 1q1o_A            6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-------NN--N------I---SPITKIKYQDEDG   67 (98)
T ss_dssp             EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-------SS--C------C---CCCCCEEEECSSS
T ss_pred             EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-------cc--c------c---cceeEEEEEcCCC
Confidence            6788888742      12366667778889999999999996220       00  0      0   1346899999999


Q ss_pred             CeEEccC-CChHHHhhccc
Q 022632          248 DWMLVGD-VPWRMFISSVK  265 (294)
Q Consensus       248 DwMLVGD-vPWemFv~svK  265 (294)
                      |+...++ .=|+|-+.+++
T Consensus        68 D~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           68 DFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             CEEEECSHHHHHHHHHHHH
T ss_pred             CEEEEcCHHHHHHHHHHHH
Confidence            9988876 68999888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.76
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.33
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	86.62

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0015  Score=49.49  Aligned_cols=66  Identities=9%  Similarity=0.126  Sum_probs=51.5

Q ss_pred             ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632          174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG  253 (294)
Q Consensus       174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG  253 (294)
                      .-|||...|..+=-+|-+....+|++|...|++.|.     +                    .++.|.|.|.|+||.++.
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~-----l--------------------~~~~lkY~Ddd~e~v~l~   59 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L--------------------NTIQIKYLDEENEEVSIN   59 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-----C--------------------SSEEEEEECTTSCEEEEC
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC-----c--------------------ccceEEEEcCCCCEEEEe
Confidence            468999988766557777788999999999999995     2                    146899999999999876


Q ss_pred             -CCChHHHhhcc
Q 022632          254 -DVPWRMFISSV  264 (294)
Q Consensus       254 -DvPWemFv~sv  264 (294)
                       |.=.++.+..+
T Consensus        60 ~d~dl~E~~~~a   71 (85)
T d2bkfa1          60 SQGEYEEALKMA   71 (85)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence             44556655544

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.01  Score=43.87  Aligned_cols=69  Identities=13%  Similarity=0.113  Sum_probs=51.4

Q ss_pred             ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632          174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG  253 (294)
Q Consensus       174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG  253 (294)
                      .-|||+.++.-  |.+-|..--+|.+|...+.+.|.     .                    ..|+|-|.|.||||..+-
T Consensus        13 ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~-----~--------------------~~~~lkY~Dedgd~v~i~   65 (85)
T d1ip9a_          13 TKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRID-----T--------------------DNFKLQTKLFDGSGEEIK   65 (85)
T ss_dssp             EEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHT-----S--------------------SCEEEEECCSSSCCSCCC
T ss_pred             EEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhC-----C--------------------CceEEEEEcCCCCEEEEe
Confidence            68999998874  44445556789999999999995     1                    147999999999998665


Q ss_pred             -CCChHHHhhccceeEE
Q 022632          254 -DVPWRMFISSVKRLRI  269 (294)
Q Consensus       254 -DvPWemFv~svKRLrI  269 (294)
                       |.=+++=++...||.+
T Consensus        66 sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          66 TDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             SHHHHHHHHHTTCCEEE
T ss_pred             CHHHHHHHHHhcCcEEE
Confidence             4456666665555554

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=1.3  Score=32.59  Aligned_cols=55  Identities=15%  Similarity=0.235  Sum_probs=42.9

Q ss_pred             eeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC-CChHHHhhccc
Q 022632          188 KVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD-VPWRMFISSVK  265 (294)
Q Consensus       188 KVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD-vPWemFv~svK  265 (294)
                      .+|.....+|++.+.-|+.|-.     +.                  .-+|+|.|.|.+||.+=+-. +-+.-=+.+++
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~-----l~------------------~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQ-----IP------------------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTT-----CT------------------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eeccccccCHHHHHHHHHHHcC-----CC------------------CCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            5777888999999999999985     21                  25789999999999998764 45555556666