Citrus Sinensis ID: 022701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAELGWSMQCSQHAAMQHLLIL
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccHHHHHHHHHccccccccccEEcccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHcccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccEHHHHHccccEEEEEHHHHHHHHHHccHHHccccHHHHccccEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHcccccHHHcccccccccccccccEEEEEcccHHccHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgymcdfcgdqrsivycrsdaaclclscdRNVHLANALSKRHSRTLLcercnsqpalVRCAEERVSLCqncdwighgtstsasshkrqtincysgcpsaselSSIWSFvldfpsggesacEQELGLmsitdnsiknswgpnedsisqnaagggveandvcdadksnvrvgatsvpginsttqnrdqihgsannpplpklccsatkdlafcedddlyedfnmdemdlnFENYEELFGVTLNHSeellenggieslfgtkdmsaadsnCQGAVAAELGWSMQCSQHAAMQHLLIL
Flexible Loop (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGtstsasshkrqTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVgatsvpginsttqnrDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAELGWSMQCSQHAAMQHLLIL
Low Complexity Region (SEG)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAELGWSMQCSQHAAMQHLLIL
Disordered region (IsUnstruct)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGT*********QTINCYSGCPSASELSSIWSFVLDFPSGG***C***LGL***********************************************************************KLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKD*****SNCQGAVAAELGWSMQCSQHA********
Disordered Region (DISOPRED)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTS***SSHKRQTINCYSGCPSASELSSIWS*****************************************************************************************************FCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESL******************************AAMQHLLIL
Disordered Region (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHG***********TINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAELGWSMQCSQHAAMQHLLIL
Disordered Region (DISPRO)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF******************************************EANDVCDADKSNVRVGATSVPGINS**QNR*QI****NNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAELGWSMQCSQHAAMQHLLIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAELGWSMQCSQHAAMQHLLIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q9SSE5	372	Zinc finger protein CONST	yes	no	0.737	0.580	0.556	2e-74
Q9LUA9	373	Zinc finger protein CONST	no	no	0.747	0.587	0.552	3e-67
O23379	330	Putative zinc finger prot	no	no	0.372	0.330	0.504	7e-28
Q9LJ44	364	Zinc finger protein CONST	no	no	0.389	0.313	0.474	1e-27
O22800	402	Zinc finger protein CONST	no	no	0.361	0.263	0.443	3e-26
Q9C7E8	433	Zinc finger protein CONST	no	no	0.430	0.290	0.414	5e-26
Q9C9F4	356	Putative zinc finger prot	no	no	0.372	0.306	0.455	3e-24
O82256	332	Zinc finger protein CONST	no	no	0.341	0.301	0.470	2e-22
Q940T9	362	Zinc finger protein CONST	no	no	0.307	0.248	0.422	5e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.361	0.360	0.383	4e-13

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score =  279 bits (714), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/264 (55%), Positives = 175/264 (66%), Gaps = 48/264 (18%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query: 61  AEERVSLCQNCDWIGH---------GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
            EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct: 61  VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query: 112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
               G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct: 121 L--AGQSICEQELGMMNIDDD------GPTD--------------KKTCNEDKKDVLVGS 158

Query: 172 TSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENY 231
           +S+P  +S  Q +                 S+ KD+  CE DD Y +  MDE+D+  ENY
Sbjct: 159 SSIPETSSVPQGKS----------------SSAKDVGMCE-DDFYGNLGMDEVDMALENY 201

Query: 232 EELFGVTLNHSEELLENGGIESLF 255
           EELFG   N SEEL  +GGI+SLF
Sbjct: 202 EELFGTAFNPSEELFGHGGIDSLF 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/259 (55%), Positives = 165/259 (63%), Gaps = 40/259 (15%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query: 61  AEERVSLCQNCDWIGH--GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
           ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct: 61  SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query: 117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPG 176
           ESACEQ +GLM+I ++                  G G         +KS V+      P 
Sbjct: 121 ESACEQGMGLMTIDED------------------GTG---------EKSGVQKINVEQPE 153

Query: 177 INSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFG 236
            +S  Q  D      N+        S  K+L  CEDD    +   DE+DL  ENYEELFG
Sbjct: 154 TSSAAQGMDHSSVPENS--------SMAKELGVCEDD-FNGNLISDEVDLALENYEELFG 204

Query: 237 VTLNHSEELLENGGIESLF 255
              N S  L E+GGI SLF
Sbjct: 205 SAFNSSRYLFEHGGIGSLF 223

Arabidopsis thaliana (taxid: 3702)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score =  124 bits (311), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 2/111 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C
Sbjct: 1   MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
             E VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+
Sbjct: 61  MNENVSLCQGCQWT--ASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC
Sbjct: 1   MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
            +E+VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P  G
Sbjct: 61  LDEKVSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 77/106 (72%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct: 12  CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVL 110
           + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   L
Sbjct: 72  LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDL 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 82/128 (64%), Gaps = 2/128 (1%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct: 9   CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
           + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +    Q  
Sbjct: 69  LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDEENQVP 126

Query: 125 GLMSITDN 132
            +  + DN
Sbjct: 127 MMAMMMDN 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct: 10  MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
            + ++ LC  C+   HG  +  S H+R+ + CY+GCP A + + +W F V+D
Sbjct: 70  FDHKMFLCHGCNDKFHGGGS--SEHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct: 12  LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
           R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct: 72  RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 50/90 (55%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
          +CD C    + +YCR DAA LCLSCD  VH AN L+ RH+R  +CE C   PA V C  +
Sbjct: 5  LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKAD 64

Query: 64 RVSLCQNCDWIGHGTSTSASSHKRQTINCY 93
            +LC  CD   H  +  A  H+R  +  +
Sbjct: 65 AAALCVTCDRDIHSANPLARRHERVPVTPF 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct: 7   LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFV 109
             +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV
Sbjct: 67  AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV 113

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
255567234	414	transcription factor, putative [Ricinus	0.918	0.649	0.730	1e-110
359485854	415	PREDICTED: zinc finger protein CONSTANS-	0.928	0.655	0.682	1e-104
224131908	379	predicted protein [Populus trichocarpa]	0.832	0.643	0.716	1e-100
356547575	409	PREDICTED: zinc finger protein CONSTANS-	0.904	0.647	0.689	2e-98
356577552	446	PREDICTED: zinc finger protein CONSTANS-	0.904	0.594	0.693	7e-98
449444452	415	PREDICTED: zinc finger protein CONSTANS-	0.948	0.669	0.639	2e-95
356553042	411	PREDICTED: zinc finger protein CONSTANS-	0.907	0.647	0.677	6e-95
224068779	379	predicted protein [Populus trichocarpa]	0.812	0.627	0.684	1e-93
356500843	405	PREDICTED: zinc finger protein CONSTANS-	0.887	0.641	0.659	8e-93
302398767	409	COL domain class transcription factor [M	0.918	0.657	0.649	9e-90

>gi|255567234|ref|XP_002524598.1| transcription factor, putative [Ricinus communis] gi|223536151|gb|EEF37806.1| transcription factor, putative [Ricinus communis]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/275 (73%), Positives = 226/275 (82%), Gaps = 6/275 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTLLCERCNSQPAL+RC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS-GGESA 119
           A+ER+SLCQ CDW+ HG S S+S+HKRQTINCY+GCPSASELSS+WSFVLDFPS  GES 
Sbjct: 61  ADERLSLCQKCDWMVHGNSNSSSTHKRQTINCYTGCPSASELSSLWSFVLDFPSVDGEST 120

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CEQELGLMSI ++S  N+WGP + +ISQN +G     N+ C+  KS+  VG +S P +  
Sbjct: 121 CEQELGLMSIAEDSSTNTWGPPDKTISQNVSGAAA-VNNACEIPKSSGCVGNSSAPQL-- 177

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
              N D   GSA N PLPKLCC  TK  A CE DDLYEDFNMDE+DLN ENYEELFG+ L
Sbjct: 178 MPNNLDHPAGSA-NAPLPKLCCPGTKGPALCE-DDLYEDFNMDEVDLNLENYEELFGIAL 235

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAE 274
           N SEEL ENGGI+SLFG KDMSAADSNCQGAVAAE
Sbjct: 236 NDSEELFENGGIDSLFGMKDMSAADSNCQGAVAAE 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485854|ref|XP_002264506.2| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Vitis vinifera] gi|296085061|emb|CBI28476.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/274 (68%), Positives = 218/274 (79%), Gaps = 2/274 (0%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRSIVYCRSDAA LCLSCDR+VH ANALS+RHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGEQRSIVYCRSDAASLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW GHG ST+ SSHK++TINCYSGCPS+  LS++W FVLD PS G S C
Sbjct: 61  IEEKISLCQNCDWTGHGGSTTTSSHKKETINCYSGCPSSEGLSTMWPFVLDLPSTGNSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQ L LM + + S  NSWGP  +S  Q+A+   VE ND  + DKS++ +G++SVP +NS 
Sbjct: 121 EQGLSLMCLNETSEMNSWGPPGNSSRQDAS-LTVEVNDANNVDKSSILIGSSSVPELNSP 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
           +Q  DQ  GSA+   LPKL C  T DL FCEDD LYEDFNMDE+DLN ENYEELFGV L+
Sbjct: 180 SQKLDQPSGSADL-TLPKLLCPGTDDLGFCEDDSLYEDFNMDEVDLNLENYEELFGVALS 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAE 274
           HSE+L ENGGI+SLFG  D S ADS+CQGAV AE
Sbjct: 239 HSEQLFENGGIDSLFGKMDTSGADSHCQGAVIAE 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131908|ref|XP_002321208.1| predicted protein [Populus trichocarpa] gi|222861981|gb|EEE99523.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/265 (71%), Positives = 212/265 (80%), Gaps = 21/265 (7%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAA LCLSCDRNVH ANALSKRHSRTLLCERCNSQPALVRC
Sbjct: 1   MGYVCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSKRHSRTLLCERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           AEER+SLCQNCDWIGHGTSTSAS+H+RQTIN YSGCPSASELSSIWSFVLDFPS GES C
Sbjct: 61  AEERISLCQNCDWIGHGTSTSASTHRRQTINSYSGCPSASELSSIWSFVLDFPSRGESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS  +SWGP E++I QNA+ G VE ND  +  KS V +G++S+P  +S 
Sbjct: 121 EQELGLMSIAENSTTDSWGPTENTIGQNAS-GVVEVNDRREIAKSGVWLGSSSIPESSSV 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
             N DQ   SAN   LPK                   DFNMDEMDL+ ENYEELFGVTLN
Sbjct: 180 PNNLDQTTRSANT-SLPK-------------------DFNMDEMDLSLENYEELFGVTLN 219

Query: 241 HSEELLENGGIESLFGTKDMSAADS 265
           +SEELLENGGI+SLFGTKDMS  ++
Sbjct: 220 NSEELLENGGIDSLFGTKDMSVVNA 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547575|ref|XP_003542186.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/274 (68%), Positives = 215/274 (78%), Gaps = 9/274 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVLD  +  ES C
Sbjct: 61  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLDIAAISESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K+   P E    QN +G   E  D    DKS   VG +S+P  +S 
Sbjct: 121 EQELGLMSINEN--KSVGVPPE---GQNVSGSD-EVTDQPALDKS--LVGTSSMPESSSK 172

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ    AN   L KL C ATK  A CE+D+LY+DFNMDE+DLN ENYEELFG+ L+
Sbjct: 173 PRILDQPARPANE-CLSKLYCPATKFPALCENDNLYDDFNMDEVDLNLENYEELFGMALS 231

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAE 274
           HSEEL ENGGI+SLFGTKDMSA D +C+ A+AAE
Sbjct: 232 HSEELFENGGIDSLFGTKDMSAGDFSCEDAIAAE 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577552|ref|XP_003556888.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 190/274 (69%), Positives = 215/274 (78%), Gaps = 9/274 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 38  MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 97

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVL+  +  ES C
Sbjct: 98  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTC 157

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K    P ED   QN +G   E  D+   +KS   VGA+ +P  +S 
Sbjct: 158 EQELGLMSINEN--KCVGVPPED---QNVSGSD-EVTDLPALNKS--LVGASLMPESSSE 209

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
               DQ  G  N   LPKL C ATK  A  EDD+LY+DFNMDE+DL+ ENYEELFG+ L+
Sbjct: 210 PCILDQPAGPTNE-CLPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALS 268

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAE 274
           HSEEL ENGGI+SLFGTK MSA DSNCQ A+AAE
Sbjct: 269 HSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAE 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444452|ref|XP_004139988.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus] gi|449475645|ref|XP_004154511.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/286 (63%), Positives = 215/286 (75%), Gaps = 8/286 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MG+MCDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RH+RTLLCERC+ QP+ VRC
Sbjct: 1   MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRC 60

Query: 61  AEERVSLCQNCDWIGHGTST-SASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESA 119
            EERVSLCQNCDW GHG+ST ++SSHKRQTINCYSGCPSA+ELS IWSFVLD PS  + A
Sbjct: 61  IEERVSLCQNCDWTGHGSSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVND-A 119

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CE+ELGLMSI +  +  +W P+E++  Q    G  EA+DVC  +KSNV VG++S+  I S
Sbjct: 120 CEKELGLMSIAETDLTGAWSPSENNAGQRMP-GSTEASDVCSREKSNVLVGSSSL--IGS 176

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFC-EDDDLYEDFNMDEMDLNFENYEELFGVT 238
                DQ     +N  LPK CC  TK   FC EDDDLY++F+MDEMDLN ENYE+LF ++
Sbjct: 177 RPHTSDQ-PVELDNVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEDLFSMS 235

Query: 239 LNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAELGWSMQCSQH 284
           LNHSEE  ENGGI+S F  K +S  DS    AV AE G SM   Q 
Sbjct: 236 LNHSEEFFENGGIDSFFEAKGLSFEDSVSHSAVVAE-GSSMGVVQQ 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553042|ref|XP_003544867.1| PREDICTED: zinc finger protein CONSTANS-LIKE 10-like [Glycine max]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 187/276 (67%), Positives = 213/276 (77%), Gaps = 10/276 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTL+CERCNSQPA VRC
Sbjct: 1   MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            +E++SLCQNCDW+GHGTS S+S+HKRQ+INCYSGCPSA+E SSIWSF LD PS GE AC
Sbjct: 61  VDEKISLCQNCDWLGHGTSPSSSTHKRQSINCYSGCPSAAEFSSIWSFFLDIPSMGE-AC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+W   E    QN +G   E  D+    KS    G +SVP  +S 
Sbjct: 120 EQELGLMSINENSNKNAWASPE---GQNVSGSA-EVTDLPSKGKS--WAGTSSVPESSSE 173

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ  G AN   +PKL C   K     EDDDLY+DF MDE+DL  ENYEELFG+ L+
Sbjct: 174 PRILDQPPGPANE-CMPKLYCPGKKVSGIYEDDDLYDDFIMDEVDLQLENYEELFGMALS 232

Query: 241 HSEELLENGGIESLFGTKDMSAA--DSNCQGAVAAE 274
           HSEEL ENGGI SLF TKDMSA+  DS+CQGAVAAE
Sbjct: 233 HSEELFENGGINSLFETKDMSASAGDSHCQGAVAAE 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068779|ref|XP_002302823.1| predicted protein [Populus trichocarpa] gi|222844549|gb|EEE82096.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/266 (68%), Positives = 204/266 (76%), Gaps = 28/266 (10%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAACLCLSCD+ VH ANALSKRHSRTLLCERCNSQPALVR 
Sbjct: 1   MGYICDFCGEQRSMVYCRSDAACLCLSCDQIVHSANALSKRHSRTLLCERCNSQPALVRR 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EER+SLCQNCDW+G+G+STSAS+HKRQTINCY GCPS SELSS W F+LD PSGG S C
Sbjct: 61  VEERISLCQNCDWMGYGSSTSASTHKRQTINCYFGCPSVSELSSKWPFILDSPSGGGSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+WGP E++I  NA+G                 VGA+SVP  +S 
Sbjct: 121 EQELGLMSIAENSTKNTWGPTENTICHNASG----------------IVGASSVPESSSV 164

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +N DQ   S N+  LPK+C           D DLYEDFNM EMDLN ENYEELFGVTLN
Sbjct: 165 PKNLDQPTRSPNS-SLPKVC-----------DADLYEDFNMAEMDLNLENYEELFGVTLN 212

Query: 241 HSEELLENGGIESLFGTKDMSAADSN 266
           +SEEL ENGGI+SLFGTKDM   DSN
Sbjct: 213 NSEELFENGGIDSLFGTKDMPIVDSN 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500843|ref|XP_003519240.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 182/276 (65%), Positives = 206/276 (74%), Gaps = 16/276 (5%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSD+ACLCLSCDRNVH ANALS+RHSRTL+CERCNSQPA VR 
Sbjct: 1   MGYLCDFCGDQRSLVYCRSDSACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRS 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTS S+S HKRQ+INCYSGCPSA+E SSIWSF LD PS GE AC
Sbjct: 61  VEEKISLCQNCDWLGHGTSPSSSMHKRQSINCYSGCPSAAEFSSIWSFFLDIPSLGE-AC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N       P E    QN + G  E  D+    KS    G  S+P  +S 
Sbjct: 120 EQELGLMSINENI------PPE---GQNVS-GSTEVTDLPSKGKS--WAGTPSIPESSSE 167

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ  G AN   +PKL C   K    CEDDDLY+DF MDE+DL  ENYEELFG+ L+
Sbjct: 168 PRILDQPPGPANE-CVPKLYCPGKKASGICEDDDLYDDFIMDEVDLELENYEELFGMALS 226

Query: 241 HSEELLENGGIESLFGTKDMSAA--DSNCQGAVAAE 274
           HSEEL ENGGI SLF  KDMSA+  DS+CQGAVAAE
Sbjct: 227 HSEELFENGGINSLFEAKDMSASAGDSHCQGAVAAE 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398767|gb|ADL36678.1| COL domain class transcription factor [Malus x domestica]

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 178/274 (64%), Positives = 210/274 (76%), Gaps = 5/274 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCD+C  QRS+V+CRSDAACLCLSCDRNVH ANALS+RH RTL+CERCNSQPALVRC
Sbjct: 1   MGYMCDYCQVQRSMVHCRSDAACLCLSCDRNVHSANALSRRHLRTLICERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EERVSLCQNCDW+GH  STSAS HKRQT+NCYSGCPS++ELSSIWSFV D PS GESAC
Sbjct: 61  TEERVSLCQNCDWMGHQASTSASGHKRQTLNCYSGCPSSAELSSIWSFVSDLPSNGESAC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQE+GLMSI +NS ++ W   E +  Q+A+G   E N     +KS + VG++SVP  +  
Sbjct: 121 EQEMGLMSIAENSTRSEWSQTESNTRQSASGAD-EVNPAHSMEKSGILVGSSSVPERSHA 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
                Q+ GS N   LPKL     K     EDDDLY+D +MDEM+LN ENY+ELFGV+LN
Sbjct: 180 RHVVGQLSGSVN-ASLPKLYSHGGKGTGLPEDDDLYDDLDMDEMELNLENYDELFGVSLN 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAE 274
           HSEEL +NGGI+SLFG K++S    +CQ AVAAE
Sbjct: 239 HSEELFKNGGIDSLFGAKNVS---RDCQDAVAAE 269

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2164718	373	BBX8 "B-box domain protein 8"	0.539	0.423	0.660	1.6e-56
TAIR|locus:2091082	372	COL9 "CONSTANS-like 9" [Arabid	0.552	0.435	0.601	2e-56
TAIR|locus:2129860	330	BBX9 "B-box domain protein 9"	0.365	0.324	0.518	7.1e-34
TAIR|locus:2088748	364	BBX10 "B-box domain protein 10	0.375	0.302	0.482	3.8e-33
TAIR|locus:2199262	356	BBX27 "B-box domain protein 27	0.372	0.306	0.455	3.4e-32
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.460	0.311	0.412	2.1e-29
TAIR|locus:2051104	402	BBX12 "B-box domain protein 12	0.402	0.293	0.416	2.4e-28
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.341	0.301	0.470	9.7e-25
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.617	0.698	0.3	6.7e-17
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.590	0.505	0.310	2.6e-15

TAIR|locus:2164718 BBX8 "B-box domain protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 107/162 (66%), Positives = 125/162 (77%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query:    61 AEERVSLCQNCDWIGHG--TSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
             ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct:    61 SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query:   117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEAND 158
             ESACEQ +GLM+I ++      G  + ++ Q       +  D
Sbjct:   121 ESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMD 162

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2091082 COL9 "CONSTANS-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 116/193 (60%), Positives = 137/193 (70%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query:    61 AEERVSLCQNCDWIGHG---------TSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
              EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct:    61 VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query:   112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
                 G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct:   121 L--AGQSICEQELGMMNIDDD------GPTDKK--------------TCNEDKKDVLVGS 158

Query:   172 TSVPGINSTTQNR 184
             +S+P  +S  Q +
Sbjct:   159 SSIPETSSVPQGK 171

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP;RCA

TAIR|locus:2129860 BBX9 "B-box domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 57/110 (51%), Positives = 78/110 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C  E 
Sbjct:     5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS 114
             VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+ PS
Sbjct:    65 VSLCQGCQWTA--SNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE-PS 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2088748 BBX10 "B-box domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC +E+
Sbjct:     5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
             VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P  G
Sbjct:    65 VSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2199262 BBX27 "B-box domain protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 51/112 (45%), Positives = 75/112 (66%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct:    10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query:    61 AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
              + ++ LC  C+   HG  +S   H+R+ + CY+GCP A + + +W F V+D
Sbjct:    70 FDHKMFLCHGCNDKFHGGGSS--EHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/143 (41%), Positives = 94/143 (65%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct:     9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +   E ++
Sbjct:    69 LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDE-ENQV 125

Query:   125 GLMSIT-DN-SIK-NSW--GPNE 142
              +M++  DN  ++ +SW  G NE
Sbjct:   126 PMMAMMMDNFGMQLDSWVLGSNE 148

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2051104 BBX12 "B-box domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 50/120 (41%), Positives = 82/120 (68%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct:    12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   +D     +   E EL
Sbjct:    72 LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWG--IDLKGKKKEDDEDEL 129

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 48/102 (47%), Positives = 69/102 (67%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct:    12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
             R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct:    72 RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 57/190 (30%), Positives = 86/190 (45%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C    S+VYCR+DAA LC SCD  VH AN ++ RH R  +CE C   PA + C  + 
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
              +LC  CD   +  +  A  H+R  +        P+ S L+             +   + 
Sbjct:    95 AALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEEVDS 154

Query:   123 ELGLMSITDNSIKNSWG---PNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
              L L   +DN+  N+      N D+ + N++  G+   +V   D+    VG  S    N 
Sbjct:   155 WLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NR 210

Query:   180 TTQNRDQIHG 189
                N+D+ +G
Sbjct:   211 IENNQDRQYG 220

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 206 (77.6 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 58/187 (31%), Positives = 85/187 (45%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C    S+VYCR+DAA LC SCD  VH AN ++ RH R  +CE C   PA + C  + 
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACEQAPAALACRADA 94

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
              +LC  CD   H  +  A  H+R  +        P+ S L+           GG+   ++
Sbjct:    95 AALCVACDVQVHSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATV-LGGK---DE 150

Query:   123 ELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQ 182
             E+    I      N    N ++ + N++  G+   +V   D+    VG  S    N    
Sbjct:   151 EVDSWIILSKDSNN----NNNNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NRIEN 202

Query:   183 NRDQIHG 189
             N+DQ +G
Sbjct:   203 NQDQQYG 209

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	5e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	8e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	0.001

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
           CD  GD+ +  +C    A LC +CD   H      + H+  LL
Sbjct: 5  KCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
          +CD  G++   ++C +D A LC+ CD +VH        H R  L
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI 90
          LC+    +P  + C  +R  LC +CD   H      S H+R  +
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.45
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.34
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.14
smart00336	42	BBOX B-Box-type zinc finger.	97.05
smart00336	42	BBOX B-Box-type zinc finger.	96.45
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.35
KOG4367	699	consensus Predicted Zn-finger protein [Function un	94.57

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.45  E-value=8.7e-05  Score=49.02  Aligned_cols=38  Identities=32%  Similarity=0.768  Sum_probs=33.4

Q ss_pred             cccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceec
Q 022701           47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (293)
Q Consensus        47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pl   90 (293)
                      +|+.+..+++.+||..|...+|..|+..+|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6888888899999999999999999988763      7888775

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.34  E-value=0.00015  Score=47.91  Aligned_cols=39  Identities=38%  Similarity=0.809  Sum_probs=34.0

Q ss_pred             CCCCccCCCCeEEEecCCccccccccCcccccccchhcccccccc
Q 022701            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (293)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpL   47 (293)
                      .+|+.++.+++.+||..|.+.+|..|+...|.      .|.++++
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36999999899999999999999999988875      5887764

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.14  E-value=0.00018  Score=48.84  Aligned_cols=41  Identities=27%  Similarity=0.525  Sum_probs=34.8

Q ss_pred             ccccccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceec
Q 022701           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (293)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pl   90 (293)
                      +.+.|..|...++.+||..|..++|..|....|..      |+.+||
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            35689999998899999999999999999998753      888775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.05  E-value=0.00052  Score=45.86  Aligned_cols=41  Identities=29%  Similarity=0.545  Sum_probs=34.8

Q ss_pred             ccccccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceec
Q 022701           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (293)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pl   90 (293)
                      |..+|+.|...++.+||..|...+|..|....|      ..|.+.||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            567899999999999999999999999997755      57777664

>smart00336 BBOX B-Box-type zinc finger

Probab=96.45  E-value=0.0025  Score=42.56  Aligned_cols=39  Identities=36%  Similarity=0.718  Sum_probs=33.0

Q ss_pred             CCCCccCCCCeEEEecCCccccccccCcccccccchhcccccccc
Q 022701            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (293)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpL   47 (293)
                      ..|..++..++.+||..|.+.+|..|....|      +.|.+.+|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5799999889999999999999999998866      35766553

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.35  E-value=0.0023  Score=43.30  Aligned_cols=40  Identities=18%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CCCCCccCCCCeEEEecCCccccccccCcccccccchhcccccccc
Q 022701            2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (293)
Q Consensus         2 ~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpL   47 (293)
                      ...|..|...++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4679999999999999999999999999999864      766654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=94.57  E-value=0.0089  Score=60.58  Aligned_cols=74  Identities=18%  Similarity=0.428  Sum_probs=59.7

Q ss_pred             CCCccCCC--CeEEEecCCccccccccCcccccccchhcccccccc----------------ccccCCCCceeecccccc
Q 022701            4 MCDFCGDQ--RSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL----------------CERCNSQPALVRCAEERV   65 (293)
Q Consensus         4 ~Cd~C~~a--~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpL----------------Cd~C~~~PA~v~C~~d~a   65 (293)
                      .|.+|+++  .|.|+|+.+..+.|.-|..+.|-+..-..+|.-++-                |.-++...-..||..|++
T Consensus       164 kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck~  243 (699)
T KOG4367|consen  164 KCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKM  243 (699)
T ss_pred             hhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecCC
Confidence            58999987  589999999999999999999988665566654432                555555557799999999


Q ss_pred             ccccCCccCccC
Q 022701           66 SLCQNCDWIGHG   77 (293)
Q Consensus        66 ~LC~~CD~~~H~   77 (293)
                      +.|-.|-..+.+
T Consensus       244 pvc~~clee~kh  255 (699)
T KOG4367|consen  244 PVCYQCLEEGKH  255 (699)
T ss_pred             hHHHHHHHhhcc
Confidence            999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.37
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.75
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	93.46
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	92.9
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	91.2
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	90.32
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	89.55
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	88.94
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	86.65
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	84.8
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	81.52

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.37  E-value=1.3e-07  Score=73.51  Aligned_cols=84  Identities=18%  Similarity=0.445  Sum_probs=67.2

Q ss_pred             CCCCCccCC---CCeEEEecCCccccccccCcccccccchhcccccc-c---------cccccCCCCceeeccccccccc
Q 022701            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC   68 (293)
Q Consensus         2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~Rv-p---------LCd~C~~~PA~v~C~~d~a~LC   68 (293)
                      +..|++|..   .+|+.+|..+.+.||..|...+|..++..++|.++ +         .|+.+...+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            357999984   68999999999999999999999877766788765 2         3666655668899999999999


Q ss_pred             cCCcc-CccCCCCCCCCCcceecc
Q 022701           69 QNCDW-IGHGTSTSASSHKRQTIN   91 (293)
Q Consensus        69 ~~CD~-~~H~An~~as~HqR~pln   91 (293)
                      ..|.. ..|.      .|..+||.
T Consensus        83 ~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHHTTTS------SSCBCCCC
T ss_pred             hhcCCCCCcC------CCCeecCC
Confidence            99986 4453      56666653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.75  E-value=0.0088  Score=45.95  Aligned_cols=43  Identities=28%  Similarity=0.571  Sum_probs=36.3

Q ss_pred             ccccccCC---CCceeeccccccccccCCccCccCCCCCCCCCcce
Q 022701           46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (293)
Q Consensus        46 pLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~   88 (293)
                      ..|++|..   .+|+.+|..|..+||..|....|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            57999984   57999999999999999998878766666788865

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=93.46  E-value=0.031  Score=39.66  Aligned_cols=46  Identities=15%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             ccccccccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701           40 KRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (293)
Q Consensus        40 ~RH~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln   91 (293)
                      .+..+..+|..+...+..+||..|...+|..|... .|      ..|..+||.
T Consensus         3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   49 (64)
T 2d8u_A            3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   49 (64)
T ss_dssp             CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence            34556678988877889999999999999999864 44      357666655

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=92.90  E-value=0.039  Score=37.50  Aligned_cols=44  Identities=23%  Similarity=0.547  Sum_probs=35.4

Q ss_pred             ccccccccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceecc
Q 022701           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (293)
Q Consensus        42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pln   91 (293)
                      ..|...|..+...+..+||..|...+|..|....|      ..|..+||.
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~   46 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE   46 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence            45667788887788999999999999999987544      367777765

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=91.20  E-value=0.061  Score=40.52  Aligned_cols=44  Identities=27%  Similarity=0.559  Sum_probs=36.0

Q ss_pred             cccccccCC---CCceeeccccccccccCCccCccCCCCCCCCCcce
Q 022701           45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (293)
Q Consensus        45 vpLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~   88 (293)
                      ...|+.|..   .+|..+|..|.+++|..|-+..|.......+|+.+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            357999975   56899999999999999988768766667788764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=90.32  E-value=0.14  Score=35.19  Aligned_cols=40  Identities=20%  Similarity=0.472  Sum_probs=31.9

Q ss_pred             cccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701           45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (293)
Q Consensus        45 vpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln   91 (293)
                      ..+|..+. .+..+||..|...+|..|... .|      ..|..+||.
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   48 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS   48 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence            34688776 678999999999999999863 34      478888776

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=89.55  E-value=0.14  Score=34.60  Aligned_cols=42  Identities=14%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             ccccccccCCCCceeeccccccccccCCcc-CccCCCCCCCCCcceecc
Q 022701           44 RTLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN   91 (293)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~-~~H~An~~as~HqR~pln   91 (293)
                      +..+|......+..+||..|...+|..|.. ..|      ..|..+||.
T Consensus         5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   47 (48)
T 3ddt_A            5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   47 (48)
T ss_dssp             TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred             cCCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence            345677777677889999999999999974 344      367777764

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=88.94  E-value=0.31  Score=31.76  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=22.6

Q ss_pred             cccccCCCCceeeccccccccccCCccC
Q 022701           47 LCERCNSQPALVRCAEERVSLCQNCDWI   74 (293)
Q Consensus        47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~   74 (293)
                      +|.... .+..+||..|...+|..|...
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~   31 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDS   31 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence            576665 578899999999999999863

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=86.65  E-value=0.26  Score=36.63  Aligned_cols=44  Identities=20%  Similarity=0.536  Sum_probs=32.7

Q ss_pred             ccccccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (293)
Q Consensus        42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln   91 (293)
                      ..+..+|..+...+..+||..|...+|..|... .|      ..|..+||.
T Consensus        15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   59 (84)
T 2dja_A           15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN   59 (84)
T ss_dssp             CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred             CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHH
Confidence            344456777777788999999999999999873 34      356666554

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.80  E-value=0.44  Score=33.70  Aligned_cols=41  Identities=22%  Similarity=0.469  Sum_probs=31.5

Q ss_pred             ccccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (293)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln   91 (293)
                      +..+|..+. .+..+||..|...+|..|... .|      ..|...||.
T Consensus        13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~   54 (59)
T 2yrg_A           13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS   54 (59)
T ss_dssp             CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred             cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence            345677776 578899999999999999864 33      467777775

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=81.52  E-value=0.45  Score=35.68  Aligned_cols=43  Identities=21%  Similarity=0.485  Sum_probs=35.0

Q ss_pred             CCCCCccCC---CCeEEEecCCccccccccCcccccccchhccccc
Q 022701            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR   44 (293)
Q Consensus         2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~R   44 (293)
                      +..|++|..   .+|+-.|....+.||..|=...|...+..++|.-
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            357999976   6799999999999999998877876665667753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.33
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	93.67
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	91.75
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	91.25
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	81.21

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0028  Score=44.91  Aligned_cols=50  Identities=18%  Similarity=0.496  Sum_probs=39.6

Q ss_pred             chhccccccccccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceecc
Q 022701           37 ALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (293)
Q Consensus        37 ~La~RH~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pln   91 (293)
                      ++...+.|...|..+...+..+||..|...+|..|...+++     ..|...+|.
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H~~~~i~   52 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDHQVASLN   52 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTCCBCCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCC-----CCCcCcCHH
Confidence            34556788888999999999999999999999999765422     357776665

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0029  Score=42.14  Aligned_cols=44  Identities=20%  Similarity=0.550  Sum_probs=36.4

Q ss_pred             ccccccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (293)
Q Consensus        42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln   91 (293)
                      |.|..+|......+..+||..|..++|..|... .|      +.|...+|.
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l~   46 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAALS   46 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCSC
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeCC
Confidence            678889999999999999999999999999765 35      357666653

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.012  Score=39.48  Aligned_cols=40  Identities=15%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             ccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701           46 LLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (293)
Q Consensus        46 pLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln   91 (293)
                      |+|......+..+||..|..++|..|... .|      ..|.-.+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHH
Confidence            57888888899999999999999999755 34      357766665

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.037  Score=35.51  Aligned_cols=37  Identities=22%  Similarity=0.519  Sum_probs=28.9

Q ss_pred             cccccCCCCceeeccccccccccCCccCc-cCCCCCCCCCcceec
Q 022701           47 LCERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTI   90 (293)
Q Consensus        47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~An~~as~HqR~pl   90 (293)
                      +|...+ .+-.+||..|...+|..|...+ |      ..|+.+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            566663 6788999999999999997653 4      46877775

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=91.25  E-value=0.069  Score=34.04  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=26.6

Q ss_pred             ccccCCCCceeeccccccccccCCccCc-cCCCCCCCCCcceec
Q 022701           48 CERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTI   90 (293)
Q Consensus        48 Cd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~An~~as~HqR~pl   90 (293)
                      |...+ .+-.+||..|...+|..|...+ |      +.|..+||
T Consensus         3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   39 (39)
T d1frea_           3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI   39 (39)
T ss_dssp             CCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred             CcccC-cceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence            44553 5678999999999999997543 3      46776665

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.21  E-value=0.26  Score=33.48  Aligned_cols=39  Identities=18%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             ccccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceecc
Q 022701           46 LLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (293)
Q Consensus        46 pLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pln   91 (293)
                      .+|..++ .+-.+||..|...+|..|-...|      .+|..++|.
T Consensus        12 ~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~   50 (59)
T d2csva1          12 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE   50 (59)
T ss_dssp             CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred             CchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHH
Confidence            4788884 68899999999999999976555      367777764