Citrus Sinensis ID: 022864
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | 2.2.26 [Sep-21-2011] | |||||||
| Q5C9L6 | 361 | (S)-coclaurine N-methyltr | N/A | no | 0.993 | 0.800 | 0.556 | 7e-99 | |
| C3SBW0 | 356 | Pavine N-methyltransferas | N/A | no | 0.993 | 0.811 | 0.506 | 2e-88 | |
| C3SBS8 | 350 | (S)-tetrahydroprotoberber | N/A | no | 0.993 | 0.825 | 0.5 | 3e-85 | |
| Q108P1 | 358 | (S)-tetrahydroprotoberber | N/A | no | 0.993 | 0.807 | 0.481 | 5e-78 | |
| C3SBU5 | 358 | (S)-tetrahydroprotoberber | N/A | no | 0.993 | 0.807 | 0.477 | 5e-77 | |
| C3SBU4 | 358 | Probable (S)-tetrahydropr | N/A | no | 0.993 | 0.807 | 0.481 | 1e-76 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.718 | 0.547 | 0.327 | 4e-29 | |
| P0A9H8 | 382 | Cyclopropane-fatty-acyl-p | yes | no | 0.718 | 0.547 | 0.327 | 4e-29 | |
| P31049 | 394 | Probable fatty acid methy | yes | no | 0.848 | 0.626 | 0.265 | 8e-22 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | yes | no | 0.786 | 0.797 | 0.264 | 7e-17 |
| >sp|Q5C9L6|CNMT_THLFG (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 360 bits (924), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 222/293 (75%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M IA + + +Q YE+P F K++ G K SCCYF + S TL++AE AMLELYCER++
Sbjct: 69 MKIATEVETLDDQMYEVPIDFLKIMNGSNLKGSCCYFKNDSTTLDEAEIAMLELYCERAQ 128
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DGH+VLD+GCG G+L+LY+AQKY N ++T + NS +QKEFIEE+ R L NVE+++A
Sbjct: 129 IKDGHSVLDLGCGQGALTLYVAQKYKNSRVTAVTNSVSQKEFIEEESRKRNLSNVEVLLA 188
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DI+T +M +YDRI +E+FEHMKNY+ LL+KI +WM +D LLFV H CHKTFAYH+E
Sbjct: 189 DITTHKMPDTYDRILVVELFEHMKNYELLLRKIKEWMAKDGLLFVEHICHKTFAYHYEPI 248
Query: 181 NDDDWITKYFFTGGTM--PSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW T+Y F GTM PSA+ LYFQDDVSVV+HW ++GKH+++T+EEWLKR+D N+
Sbjct: 249 DEDDWFTEYVFPAGTMIIPSASFFLYFQDDVSVVNHWTLSGKHFSRTNEEWLKRLDANVE 308
Query: 239 SIKPIMESTYG--KDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
IKP+ + G + +A+K YWR F ++ E+FGYNNGEEWM +H LF+KK
Sbjct: 309 LIKPMFVTITGQCRQEAMKLINYWRGFCLSGMEMFGYNNGEEWMASHVLFKKK 361
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Involved in the biosynthesis of protoberberine alkaloids. N-methyltransferase with a substrate preference for (R,S)-norreticuline but also active with dimethoxytetrahydroisoquinoline. Thalictrum flavum subsp. glaucum (taxid: 150095) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4EC: 0 |
| >sp|C3SBW0|PNMT_THLFG Pavine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 216/292 (73%), Gaps = 3/292 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M +A + D + YE+P F ++ GK K+S YF D S TL+++E M++LYCER++
Sbjct: 65 MEMAEEVDTLDAELYEIPLPFLHIMCGKTLKFSPGYFKDESTTLDESEVYMMDLYCERAQ 124
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG ++LD+GCG GSL+L++AQKY CK+TGI NS +QKEFI +QC+ L+L NVEII+
Sbjct: 125 IKDGQSILDLGCGHGSLTLHVAQKYRGCKVTGITNSVSQKEFIMDQCKKLDLSNVEIILE 184
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ FE E +YDRI+++ + EHMKNY+ LKK+S W+ + LLFV H CHK FAY +E
Sbjct: 185 DVTKFETEITYDRIFAVALIEHMKNYELFLKKVSTWIAQYGLLFVEHHCHKVFAYQYEPL 244
Query: 181 NDDDWITKYFFTGGT--MPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW T+Y F GT M S+++LLYFQ+DVSVV+HW ++GKH + ++WLKR+D+N+
Sbjct: 245 DEDDWYTEYIFPSGTLVMSSSSILLYFQEDVSVVNHWTLSGKHPSLGFKQWLKRLDDNID 304
Query: 239 SIKPIMESTYG-KDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+K I ES YG K++A+K+ YWR F IA ++++ NNGEEWM++ LF+KK
Sbjct: 305 EVKEIFESFYGSKEKAMKFITYWRVFCIAHSQMYSTNNGEEWMLSQVLFKKK 356
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N-methyltransferase with a substrate preference for (+,-)-pavine, but also active with (R,S)-stylopine, (S)-scoulerine and (R,S)-tetrahydropalmatine. Thalictrum flavum subsp. glaucum (taxid: 150095) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 4 |
| >sp|C3SBS8|TNMT_ESCCA (S)-tetrahydroprotoberberine N-methyltransferase OS=Eschscholzia californica PE=1 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 203/292 (69%), Gaps = 3/292 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ + D ++ YELPT+F + V GK K SCCYF D + T+++AE+A ELYCER++
Sbjct: 59 MVMSGEIDTMNKETYELPTAFLEAVFGKTVKQSCCYFKDENSTIDEAEEAAHELYCERAQ 118
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LYIA+KY NC +TG+ NSK Q +IE+Q LEL NV++I A
Sbjct: 119 IKDGQTVLDIGCGQGGLVLYIAEKYKNCHVTGLTNSKAQANYIEQQAEKLELTNVDVIFA 178
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ F+ + +YDRI +E EHMKN Q +KK+S WM ED+LLFV H HKTF ++FE
Sbjct: 179 DVTKFDTDKTYDRILVVETIEHMKNIQLFMKKLSTWMTEDSLLFVDHISHKTFNHNFEAL 238
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + + F G T+ S++ LLYFQDDVS +DHW+VNG H A++ E W K++D +
Sbjct: 239 DEDDWYSGFIFPKGCVTILSSSTLLYFQDDVSALDHWVVNGMHMARSVEAWRKKLDETIE 298
Query: 239 SIKPIMESTYGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+ + I+E G +AV + + RTF I E F YNNGEEWM+T LF+KK
Sbjct: 299 AAREILEPGLGSKEAVNQVITHIRTFCIGGYEQFSYNNGEEWMITQILFKKK 350
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N-methyltransferase with a broad substrate range, accepting protoberberine alkaloids (R,S)-stylopine and (R,S)-tetrahydropalmatine, and to a lesser extent (R,S)-canadine and (S)-scoulerine. Eschscholzia californica (taxid: 3467) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|Q108P1|TNMT_PAPSO (S)-tetrahydroprotoberberine N-methyltransferase OS=Papaver somniferum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 197/293 (67%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ + + ++ YELP+ F + V GK K S CYF+ S T+++AE+A ELYCER++
Sbjct: 66 MEMSGEIETMNKETYELPSEFLEAVFGKTVKQSMCYFTHESATIDEAEEAAHELYCERAQ 125
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LYIAQKY NC +TG+ NSK Q ++ +Q L L NV+ I+A
Sbjct: 126 IKDGQTVLDIGCGQGGLVLYIAQKYKNCHVTGLTNSKAQVNYLLKQAEKLGLTNVDAILA 185
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ +E + +YDR+ IE EHMKN Q +KK+S WM +++LLFV H CHKTFA+ FE
Sbjct: 186 DVTQYESDKTYDRLLMIEAIEHMKNLQLFMKKLSTWMTKESLLFVDHVCHKTFAHFFEAV 245
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + + F G T+ +AN LLYFQDDVSVVDHW+VNG H A++ + W K +D N+
Sbjct: 246 DEDDWYSGFIFPPGCATILAANSLLYFQDDVSVVDHWVVNGMHMARSVDIWRKALDKNME 305
Query: 239 SIKPI-MESTYGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+ K I + G + V V + RTF + E F NNG+EWMV LF+KK
Sbjct: 306 AAKEILLPGLGGSHETVNGVVTHIRTFCMGGYEQFSMNNGDEWMVAQLLFKKK 358
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Involved in the biosynthesis of protopine and benzophenanthridine alkaloids. Catalyzes the conversion of the protoberberine alkaloids stylopine, canadine, and tetrahydropalmatine to their corresponding N-methylated derivatives. No activity with dimethoxytetrahydroisoquinoline, methylisoquinolinediol, norlaudanosoline, (R,S)-tetrahydroxyberbine, (S)-scoulerine or (R,S)-pavine as substrates. Papaver somniferum (taxid: 3469) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|C3SBU5|TNMT1_PAPBR (S)-tetrahydroprotoberberine N-methyltransferase 1 OS=Papaver bracteatum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 196/293 (66%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ + + ++ YELP+ F + V GK K S CYF S T+++AE+A ELYCER++
Sbjct: 66 MEMSGEIETMNKETYELPSEFLEAVFGKTVKQSMCYFKHESATIDEAEEAAHELYCERAQ 125
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LYIA+KY C +TG+ NSK Q ++ +Q L L NV+ I+A
Sbjct: 126 IKDGQTVLDIGCGQGGLVLYIARKYKKCHVTGLTNSKAQVNYLLKQAEKLGLTNVDAILA 185
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ +E + +YDR+ IE EHMKN Q +KK+S WM E++LLFV H CHKTFA+ FE
Sbjct: 186 DVTQYESDKTYDRLLMIEAIEHMKNLQLFMKKLSTWMTEESLLFVDHVCHKTFAHFFEAV 245
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + + F G T+ +AN LLYFQDDVSVVDHW+VNG H A++ + W K +D N+
Sbjct: 246 DEDDWYSGFIFPPGCATILAANSLLYFQDDVSVVDHWVVNGMHMARSVDIWRKALDKNME 305
Query: 239 SIKPI-MESTYGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+ K I + G +AV V + RTF + E F N+G+EWMV LF+KK
Sbjct: 306 AAKEILLPGLGGSHEAVNGVVTHIRTFCMGGYEQFSMNDGDEWMVAQLLFKKK 358
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N-methyltransferase with a strict substrate specificity for (R,S)-tetrahydropalmatine or (R,S)-stylopine. Papaver bracteatum (taxid: 215227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|C3SBU4|TNMT2_PAPBR Probable (S)-tetrahydroprotoberberine N-methyltransferase 2 OS=Papaver bracteatum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 196/293 (66%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ Q + + YELPT F+ GK K S CYF S T+++AE+A ELYCER++
Sbjct: 66 MGMSGQVEAFTNEVYELPTECFEAAYGKSMKLSGCYFKHESSTIDEAEEASHELYCERAQ 125
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LY+AQKY NC +TG+ NSK Q +I +Q L L+NV++I+A
Sbjct: 126 IKDGQTVLDIGCGQGGLVLYVAQKYKNCHVTGLTNSKEQVNYILKQAEKLGLRNVDVILA 185
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ +E + +YDRI I + EHMKN Q +KK+S WM ED+LLFV H CHKTF + FE
Sbjct: 186 DVTQYESDKTYDRILVIGVVEHMKNMQLFIKKLSTWMAEDSLLFVDHSCHKTFNHFFEAL 245
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + Y F G T SA+ LLYFQDDVSVVDHW+VNG H+A+T + W K++D N+
Sbjct: 246 DEDDWYSGYIFPPGCATFLSADSLLYFQDDVSVVDHWVVNGMHFARTVDAWRKKLDKNME 305
Query: 239 SIKPIMESTYGKD-QAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
++K I+ G + +AV + + RT + F N+G+EWM LF+KK
Sbjct: 306 AVKEILLPGLGGNHEAVNGVITHIRTCCVGGYVQFSLNDGDEWMNAQLLFKKK 358
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Papaver bracteatum (taxid: 215227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
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Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY + + +K + + +H K D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKK-----TDLNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY + + +K + + +H K D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKK-----TDLNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 17/264 (6%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY++ +F++L L + YSC YF + TL+ A++ + C + RL G +LDVGCG
Sbjct: 110 HYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDVGCG 169
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG L+ + A++Y + K+ GI SK Q + ++ + L + V++ + D + +D
Sbjct: 170 WGGLARFAAREY-DAKVFGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGRFD 228
Query: 133 RIYSIEMFEHMKNYQNLL---KKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
++ S+ MFEH+ + NL +K+ ++E L+ H K ++I +Y
Sbjct: 229 KVVSVGMFEHV-GHANLALYCQKLFGAVREGGLVMNHGITAKHVDGRPVGRGAGEFIDRY 287
Query: 190 FFTGGTMPSANLLLYF--QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMEST 247
F G +P +++ + + VVD + HYA+T W + ++N L ++
Sbjct: 288 VFPHGELPHLSMISASICEAGLEVVDVESLR-LHYAKTLHHWSENLENQLHKAAALVPE- 345
Query: 248 YGKDQAVKWTVYWRTFFIAVAELF 271
K WR + A F
Sbjct: 346 -------KTLRIWRLYLAGCAYAF 362
|
Pseudomonas putida (taxid: 303) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 1 MPIAIQTDKAKEQ-HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS 59
MP ++ A Q HY+L FF+L L YSC YF TL++A+ A ++L +
Sbjct: 1 MPDELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKL 60
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEII 118
L+ G T+LDVGCGWG+ + +KY + + G+ SK Q +++ E L++ ++
Sbjct: 61 GLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 119
Query: 119 VADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC------- 169
+A F + DRI SI FEH + Y + + D ++ +H
Sbjct: 120 LAGWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEI 177
Query: 170 -HKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVN-----GKHYA 223
+ F +I F GG +PS ++ + + + + V HYA
Sbjct: 178 HERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV----QECASANGFTVTRVQSLQPHYA 233
Query: 224 QTSEEWLKRMDNN 236
+T + W + N
Sbjct: 234 KTLDLWSAALQAN 246
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Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | ||||||
| 343887280 | 357 | coclaurine N-methyltransferase [Citrus u | 1.0 | 0.815 | 1.0 | 1e-174 | |
| 224142824 | 355 | predicted protein [Populus trichocarpa] | 0.993 | 0.814 | 0.882 | 1e-153 | |
| 225429586 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.989 | 0.811 | 0.836 | 1e-147 | |
| 356507030 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.993 | 0.814 | 0.820 | 1e-146 | |
| 449447151 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.993 | 0.814 | 0.823 | 1e-146 | |
| 388493772 | 358 | unknown [Medicago truncatula] gi|3884968 | 0.993 | 0.807 | 0.830 | 1e-146 | |
| 357465789 | 355 | Cyclopropane-fatty-acyl-phospholipid syn | 0.993 | 0.814 | 0.830 | 1e-145 | |
| 217072698 | 358 | unknown [Medicago truncatula] gi|3885016 | 0.993 | 0.807 | 0.816 | 1e-142 | |
| 54291178 | 359 | putative coclaurine N-methyltransferase | 0.993 | 0.805 | 0.799 | 1e-141 | |
| 222635785 | 359 | hypothetical protein OsJ_21767 [Oryza sa | 0.993 | 0.805 | 0.799 | 1e-140 |
| >gi|343887280|dbj|BAK61826.1| coclaurine N-methyltransferase [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR
Sbjct: 67 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA
Sbjct: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT
Sbjct: 187 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI
Sbjct: 247 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 291
KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME
Sbjct: 307 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 357
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142824|ref|XP_002324742.1| predicted protein [Populus trichocarpa] gi|222866176|gb|EEF03307.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/289 (88%), Positives = 270/289 (93%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+TDK K QHYELPTSFFKLVLGK KYSCCYFSD S TLEDAEKAMLELYCERS+
Sbjct: 67 MPIAIKTDKPKTQHYELPTSFFKLVLGKNLKYSCCYFSDKSNTLEDAEKAMLELYCERSQ 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS TQK I+EQCR L+LQNVEIIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSTTQKVHIDEQCRDLQLQNVEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
+ISTFEM+ASYDRIYSIEMFEHMKNY +LL KISKWMK+D L FVH+FCHK FAYHFED
Sbjct: 187 NISTFEMQASYDRIYSIEMFEHMKNYGDLLNKISKWMKQDGLHFVHYFCHKQFAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDVS+VDHWLVNGKHY+QTSEEWLKRMD NLA+I
Sbjct: 247 NEDDWITRYFFTGGTMPSANLLLYFQDDVSIVDHWLVNGKHYSQTSEEWLKRMDRNLAAI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMV HFLF KK
Sbjct: 307 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFNKK 355
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429586|ref|XP_002280292.1| PREDICTED: (S)-coclaurine N-methyltransferase [Vitis vinifera] gi|296081677|emb|CBI20682.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/288 (83%), Positives = 268/288 (93%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+T+ K QHYELPTSFFKLVLGK KYSCCYF D S TLEDAE AMLE+YC+R++
Sbjct: 67 MPIAIKTEDPKSQHYELPTSFFKLVLGKNLKYSCCYFPDKSSTLEDAENAMLEMYCKRAQ 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+EDGHTVLD+GCGWGSLSLYIAQKY+NC+ITGICNSKTQK +IEEQC+ L+LQNVEIIVA
Sbjct: 127 VEDGHTVLDIGCGWGSLSLYIAQKYTNCRITGICNSKTQKAYIEEQCQELQLQNVEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIST EMEA+YDRI+SIEMFEHMKNY++LLKKIS WMK+D+LLFVHHFCHK FAYHFED
Sbjct: 187 DISTLEMEATYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHHFCHKAFAYHFEDK 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
+DDDWIT+YFF+GGTMP+ANLLLYFQ+DVSVVDHWLVNGKHYAQTSEEWLKRMD NLASI
Sbjct: 247 SDDDWITRYFFSGGTMPAANLLLYFQEDVSVVDHWLVNGKHYAQTSEEWLKRMDKNLASI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
KPIMESTYGKD AVKWTVYWRTFFI+VAELF YN+GEEWMV FLF+K
Sbjct: 307 KPIMESTYGKDSAVKWTVYWRTFFISVAELFEYNDGEEWMVALFLFKK 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507030|ref|XP_003522274.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 237/289 (82%), Positives = 263/289 (91%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI TDK K QHYELPT+FFKLVLG KYSCCYFS AS TL+DAE+AML+LYCERS
Sbjct: 67 MPIAINTDKPKSQHYELPTAFFKLVLGNNLKYSCCYFSSASMTLDDAEEAMLKLYCERSN 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSL+LYIA+ Y+NC++TGICNS TQK +IEE+CR L+LQN+ IIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLALYIAKNYTNCRVTGICNSTTQKAYIEEKCRDLQLQNLNIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEME SYDRI+SIEMFEHMKNY++LLKKISKWMKED+LLFVH+FCHK FAYHFED
Sbjct: 187 DISTFEMETSYDRIFSIEMFEHMKNYKDLLKKISKWMKEDSLLFVHYFCHKAFAYHFEDK 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDV+V +HWLVNGKHYAQTSEEWLKRMD + I
Sbjct: 247 NEDDWITRYFFTGGTMPSANLLLYFQDDVTVTNHWLVNGKHYAQTSEEWLKRMDQRMTFI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIM+STYGKD A KWT YWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 307 KPIMQSTYGKDSATKWTAYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447151|ref|XP_004141332.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus] gi|449486691|ref|XP_004157370.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 238/289 (82%), Positives = 266/289 (92%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+TDK K QHYE+PTSFFKLVLGK KYSCCYF+D S TLEDAE AML++YCERS+
Sbjct: 67 MPIAIKTDKPKAQHYEVPTSFFKLVLGKNLKYSCCYFNDKSSTLEDAEDAMLQMYCERSQ 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSLSLYIAQKY NC +TGICNS TQK +IE++C+ L+L NV IIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLSLYIAQKYKNCTVTGICNSITQKAYIEDRCQDLQLHNVNIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIST+EMEA YDRI+SIEMFEHMKNY++LLKKIS WMK+D+LLFVH+FCHK FAYHFED
Sbjct: 187 DISTYEMEAEYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHYFCHKVFAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWIT+YFF GGTM S+NLLLYFQDDVS+VDHWLVNGKHY+QTSEEWLKRMD N+ASI
Sbjct: 247 NDDDWITRYFFEGGTMLSSNLLLYFQDDVSIVDHWLVNGKHYSQTSEEWLKRMDENIASI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIM +TYGKD AVKWTVYWRTFFIAVAELFGYNNGEEWMV+HFLF+KK
Sbjct: 307 KPIMATTYGKDSAVKWTVYWRTFFIAVAELFGYNNGEEWMVSHFLFKKK 355
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388493772|gb|AFK34952.1| unknown [Medicago truncatula] gi|388496886|gb|AFK36509.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/289 (83%), Positives = 263/289 (91%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+LYCERS
Sbjct: 70 MPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKLYCERSN 129
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSL+L+IA+ YS+ ++TGICNS TQK FIEE+CR L+LQNV+IIVA
Sbjct: 130 LKDGHTVLDVGCGWGSLTLFIAKNYSSSRVTGICNSTTQKAFIEEKCRELQLQNVDIIVA 189
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRI+SIEMFEHMKNY++LLKKIS WMKED LLFVHHFCHK FAYHFED
Sbjct: 190 DISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISIWMKEDGLLFVHHFCHKAFAYHFEDK 249
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD N SI
Sbjct: 250 NEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMDKNKTSI 309
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 310 KPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465789|ref|XP_003603179.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula] gi|355492227|gb|AES73430.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/289 (83%), Positives = 263/289 (91%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+LYCERS
Sbjct: 67 MPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKLYCERSN 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSL+L+IA+ YS+ ++TGICNS TQK FIEE+CR L+LQNV+IIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLTLFIAKNYSSSRVTGICNSTTQKAFIEEKCRELQLQNVDIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRI+SIEMFEHMKNY++LLKKIS WMKED LLFVHHFCHK FAYHFED
Sbjct: 187 DISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISIWMKEDGLLFVHHFCHKAFAYHFEDK 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD N SI
Sbjct: 247 NEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMDKNKTSI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 307 KPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072698|gb|ACJ84709.1| unknown [Medicago truncatula] gi|388501626|gb|AFK38879.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/289 (81%), Positives = 260/289 (89%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+LYCERS
Sbjct: 70 MPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKLYCERSN 129
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCG GSL+L+IA+ YS+ ++ GICNS TQK FIEE+CR L+LQ+V+IIVA
Sbjct: 130 LKDGHTVLDVGCGRGSLTLFIAKNYSSSRVAGICNSTTQKAFIEEKCRELQLQDVDIIVA 189
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRI+SIEMFEHMKNY++L KKIS WMKED LLFVHHFCHK FAYHFED
Sbjct: 190 DISTFEMEASYDRIFSIEMFEHMKNYKDLPKKISIWMKEDGLLFVHHFCHKAFAYHFEDK 249
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD N SI
Sbjct: 250 NEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMDKNKTSI 309
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 310 KPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|54291178|dbj|BAD61850.1| putative coclaurine N-methyltransferase [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust.
Identities = 231/289 (79%), Positives = 258/289 (89%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+T+KAK+QHYELPT+FFKLVLG+ KYS CYF D S TLEDAE AMLELYCER++
Sbjct: 71 MPIAIETEKAKDQHYELPTTFFKLVLGRNLKYSSCYFPDESSTLEDAEVAMLELYCERAQ 130
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DG T+LDVGCGWGSLSLYIA+KYS C ITGICNS TQK FIEEQCR EL NVEIIVA
Sbjct: 131 LQDGQTILDVGCGWGSLSLYIAKKYSKCSITGICNSTTQKAFIEEQCRENELSNVEIIVA 190
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIS FEME S+DRI SIEMFEHMKNY+ LLKK+S+WMKED+LLFVH+FCHKTFAYHFED
Sbjct: 191 DISKFEMERSFDRIISIEMFEHMKNYKALLKKLSRWMKEDSLLFVHYFCHKTFAYHFEDN 250
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDVS+ +HWLV+G HYA+TSEEWLKRMD N+ SI
Sbjct: 251 NEDDWITRYFFTGGTMPSANLLLYFQDDVSIANHWLVSGTHYARTSEEWLKRMDKNITSI 310
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+PI E TYGK+ A KW YWRTFFI+VAELFGYNNG+EWMV HFLFRKK
Sbjct: 311 RPIFEKTYGKESATKWIAYWRTFFISVAELFGYNNGDEWMVAHFLFRKK 359
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222635785|gb|EEE65917.1| hypothetical protein OsJ_21767 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/289 (79%), Positives = 258/289 (89%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+T+KAK+QHYELPT+FFKLVLG+ KYS CYF D S TLEDAE AMLELYCER++
Sbjct: 71 MPIAIETEKAKDQHYELPTTFFKLVLGRNLKYSSCYFPDESSTLEDAEVAMLELYCERAQ 130
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DG T+LDVGCGWGSLSLYIA+KYS C ITGICNS TQK FIEEQCR EL NVEIIVA
Sbjct: 131 LQDGQTILDVGCGWGSLSLYIAKKYSKCSITGICNSTTQKAFIEEQCRENELSNVEIIVA 190
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIS FEME S+DRI SIEMFEHMKNY+ LLKK+S+WMKED+LLFVH+FCHKTFAYHFED
Sbjct: 191 DISKFEMERSFDRIISIEMFEHMKNYKALLKKLSRWMKEDSLLFVHYFCHKTFAYHFEDN 250
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDVS+ +HWLV+G HYA+TSEEWLKRMD N+ SI
Sbjct: 251 NEDDWITRYFFTGGTMPSANLLLYFQDDVSIANHWLVSGTHYARTSEEWLKRMDKNITSI 310
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+PI E TYGK+ A KW YWRTFFI+VAELFGYNNG+EWMV HFLFRKK
Sbjct: 311 RPIFEKTYGKESATKWIAYWRTFFISVAELFGYNNGDEWMVAHFLFRKK 359
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | ||||||
| TAIR|locus:2125924 | 355 | AT4G33110 [Arabidopsis thalian | 0.993 | 0.814 | 0.775 | 1.9e-129 | |
| TAIR|locus:2125934 | 355 | AT4G33120 [Arabidopsis thalian | 0.993 | 0.814 | 0.733 | 8e-124 | |
| TIGR_CMR|GSU_2318 | 359 | GSU_2318 "cyclopropane-fatty-a | 0.982 | 0.796 | 0.498 | 1.4e-80 | |
| UNIPROTKB|G4MND9 | 351 | MGG_06926 "Cyclopropane-fatty- | 0.965 | 0.800 | 0.451 | 1.4e-69 | |
| UNIPROTKB|P0A9H7 | 382 | cfa "cyclopropane fatty acyl p | 0.718 | 0.547 | 0.327 | 8.8e-31 | |
| TIGR_CMR|CJE_1317 | 387 | CJE_1317 "cyclopropane-fatty-a | 0.862 | 0.648 | 0.297 | 3.5e-27 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.766 | 0.518 | 0.297 | 3.1e-24 | |
| UNIPROTKB|Q9KSY4 | 432 | VC_1122 "Cyclopropane-fatty-ac | 0.845 | 0.569 | 0.283 | 1.7e-22 | |
| TIGR_CMR|VC_1122 | 432 | VC_1122 "cyclopropane-fatty-ac | 0.845 | 0.569 | 0.283 | 1.7e-22 | |
| TIGR_CMR|BA_3460 | 390 | BA_3460 "cyclopropane-fatty-ac | 0.879 | 0.656 | 0.267 | 5.3e-22 |
| TAIR|locus:2125924 AT4G33110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
Identities = 224/289 (77%), Positives = 261/289 (90%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI T+K K QHYELPT+FF+LVLG+ KYS CYFS+ S +LEDAE+A+L LYCER++
Sbjct: 67 MPIAIHTEKPKTQHYELPTAFFELVLGRNMKYSSCYFSNDSSSLEDAEEAILALYCERAK 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+EDG +VLD+GCGWGSLSLYIA+KYS CK+TGICNSKTQK FI+E+CR L LQN+EIIVA
Sbjct: 127 VEDGQSVLDIGCGWGSLSLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQNIEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFE E +YDRI+SIEMFEHMKNY LLKKI KWMKED+LLFVH+FCHKTFAYHFED
Sbjct: 187 DISTFEHEGTYDRIFSIEMFEHMKNYGELLKKIGKWMKEDSLLFVHYFCHKTFAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWIT++FF+GGTMPSA+LLLYFQ++VS+VDHWLV+G HYA+TSEEWLKRMD + ++
Sbjct: 247 NDDDWITRHFFSGGTMPSADLLLYFQENVSIVDHWLVSGTHYAKTSEEWLKRMDKEIVAV 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
K IME TYGK++AVKW VYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 307 KKIMEVTYGKEEAVKWMVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
|
| TAIR|locus:2125934 AT4G33120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 212/289 (73%), Positives = 254/289 (87%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI T+ AK QHYELPT+FF+ LG+ KYSCCY+S+ S +LE+A +AML L CER++
Sbjct: 67 MPIAINTETAKTQHYELPTAFFEHALGRNIKYSCCYYSNDSSSLEEAGEAMLALSCERAK 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+EDG +VLD+GCGWGSL+LYIA+KYS CK+TGICNSKTQK FI+E+CR L LQNVEII A
Sbjct: 127 VEDGQSVLDIGCGWGSLTLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQNVEIIAA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFE E +YDRI+SIEMFEHMKNY LLKKI WMKED+LLFVH+ CHKT+AYHFED
Sbjct: 187 DISTFEHEGTYDRIFSIEMFEHMKNYGELLKKIGNWMKEDSLLFVHYLCHKTYAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWIT++FF+GGTMPSA+LLLYFQ++VS++DHWLVNG HYA+TSEEWLK MD + ++
Sbjct: 247 NDDDWITRHFFSGGTMPSADLLLYFQENVSIMDHWLVNGTHYAKTSEEWLKGMDKEIVAV 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
K IME TYGK++AVKWTVYWRTFFIA+AELF YNNG+EWM+ HFLF+KK
Sbjct: 307 KEIMEVTYGKEEAVKWTVYWRTFFIALAELFAYNNGDEWMIAHFLFKKK 355
|
|
| TIGR_CMR|GSU_2318 GSU_2318 "cyclopropane-fatty-acyl-phospholipid synthase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 143/287 (49%), Positives = 195/287 (67%)
Query: 2 PIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL 61
P+A++T A +QHYELP FF LVLG KYSCC + L AE+AML L C+R+ L
Sbjct: 53 PLAMETGAANKQHYELPPDFFSLVLGPRRKYSCCLYPPGVDDLATAEEAMLRLTCQRAGL 112
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
DG +L++GCGWGSL+L++A+ Y + +IT + NS Q++FI+ CR NV +I AD
Sbjct: 113 ADGMDILELGCGWGSLTLWMAEHYPDARITAVSNSAPQRQFIQGACRGRGFGNVRVITAD 172
Query: 122 ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTN 181
++ F +E ++DR+ S+EMFEHM+NY LL++I+ W+K+D LFVH FCH+T AY F+
Sbjct: 173 MNDFTIEKTFDRVVSVEMFEHMRNYAELLRRIAGWLKDDGRLFVHIFCHRTLAYLFQTDG 232
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
+DDW+ +YFFTGG MPS +LL YF D ++V DHW V G+HY +T + WL+RMD I
Sbjct: 233 EDDWMGRYFFTGGIMPSDHLLFYFNDHLAVEDHWRVGGRHYQRTCDGWLERMDTERRKIL 292
Query: 242 PIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
I Y D V W WR FF+A +ELFGY+ G EW V+H+L RK
Sbjct: 293 EIFWDVYEGDAPV-WFQRWRVFFMACSELFGYSEGNEWFVSHYLLRK 338
|
|
| UNIPROTKB|G4MND9 MGG_06926 "Cyclopropane-fatty-acyl-phospholipid synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 129/286 (45%), Positives = 184/286 (64%)
Query: 2 PIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL 61
PIA++T A QHYE+ T LG KYS C + +TL AE AML Y E+++L
Sbjct: 55 PIAVETAAANSQHYEVGTGVLAACLGPRMKYSACLYPKGGETLAQAEVAMLRTYLEKAQL 114
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
EDG +LD+GCGWGS +L+ A+ +IT NSKTQKE+I+ + + L N+++I +
Sbjct: 115 EDGMDILDLGCGWGSGALFFAEMLPGARITAFSNSKTQKEYIDSKAQEKSLTNLKVITGN 174
Query: 122 ISTFEMEAS-YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
I+ +E E + +DR+ SIEMFEHMKNY+ L+ K+S+ ++ LFVH F H+ Y FE+
Sbjct: 175 IADYEFEQNTFDRVVSIEMFEHMKNYELLMAKVSRALRPGGKLFVHIFAHRDSPYDFEE- 233
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
W++ +FFTGGTMPS +LLLYFQ ++ + W +NGKHY++T E+WL +M N I
Sbjct: 234 ---GWMSTHFFTGGTMPSTDLLLYFQREMKIEKQWWINGKHYSKTCEDWLAKMIKNKKEI 290
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLF 286
P + TYG+ A W W+ F++A +ELF Y NG+ W V H+LF
Sbjct: 291 WPHLVETYGEADATTWYNRWQIFYMACSELFNYENGDTWGVAHYLF 336
|
|
| UNIPROTKB|P0A9H7 cfa "cyclopropane fatty acyl phospholipid synthase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 73/223 (32%), Positives = 117/223 (52%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDADN-LESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY + + +K + + +H T D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLH-----TIGSKKTDLNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
|
|
| TIGR_CMR|CJE_1317 CJE_1317 "cyclopropane-fatty-acyl-phospholipid synthase, putative" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 84/282 (29%), Positives = 139/282 (49%)
Query: 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGH 65
Q K + HY++ F+KL L YSC YF + + TL +A+ +E ++ L++G
Sbjct: 104 QESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLKEGE 163
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST 124
+LD+GCGWG LS+ AQKY K+ GI S+ Q + +E+ + L L++ +EI + +
Sbjct: 164 KLLDIGCGWGWLSIMAAQKYG-VKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQD 222
Query: 125 FEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
E E +D++ S+ MFEH+ +N K+ + +K + +H A TN
Sbjct: 223 LEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSI----LAMFEGKTNA 278
Query: 183 DDWITKYFFTGGTMPSANLLLYFQDDVSVVDHW---LVNGK----HYAQTSEEWLKRMDN 235
WI KY F GG +PS ++ VS + W L+ + HYA+T + W D
Sbjct: 279 --WIDKYIFPGGYLPS------LREVVSAMSEWDFHLLLAESLRMHYAKTLDLW----DE 326
Query: 236 NLASIKPIMESTYGKDQAVKWTVYWRT----FFIAVAELFGY 273
N + + Y ++ W +Y R+ F + +LF +
Sbjct: 327 NFNEVLDKVREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQF 368
|
|
| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 69/232 (29%), Positives = 118/232 (50%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY+L FKL L K YSC YF+ + LE+A+ + +++ L+ H +L++GCG
Sbjct: 152 HYDLSNDMFKLFLDKTMSYSCAYFNHREQDLEEAQYNKIRKLIDQANLKKDHHLLEIGCG 211
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 133
WG+L++ A K + C++TGI S+ Q ++ E+ + L++ I + I + +D
Sbjct: 212 WGALAIE-AVKRTGCRVTGISLSQEQLKYGRERVKEEGLED-RIDLQYIDYRNVVGQFDS 269
Query: 134 IYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDD-DWITKYF 190
I S EM E + +NY+ + + + +K + +L + K FE D+I KY
Sbjct: 270 IISCEMLEAVGYENYKTYFQSVERLLKPNGVLVLQFITFKD--QDFEGLKKRCDFIQKYI 327
Query: 191 FTGGTMPSANLLLYFQDDVS--VVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
F GG +PS ++ + S V+ + + G HYA T + W +N I
Sbjct: 328 FPGGLLPSITAVINSATENSNLVLQNSVTFGTHYALTLDIWRNNFFSNKEKI 379
|
|
| UNIPROTKB|Q9KSY4 VC_1122 "Cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 75/265 (28%), Positives = 131/265 (49%)
Query: 8 DKAKE---QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDG 64
D+AK+ QHY+L ++L L + YS F+ +LE A++A ++ CE+ +L+
Sbjct: 157 DQAKDNIHQHYDLGNELYQLFLDEEMLYSSALFTQPELSLEQAQQAKMQRLCEQLQLKPT 216
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS 123
VL++G GWG++++Y+AQ Y CK+T S+ Q + +++ L L N + ++ D
Sbjct: 217 DHVLEIGTGWGAMAIYMAQHYG-CKVTTTTISEEQYAYAQQKITALGLNNQITLLKQDYR 275
Query: 124 TFEMEASYDRIYSIEMFEHM-KNY-QNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTN 181
+ YD++ SIEM E + K Y L + +K + + Y +N
Sbjct: 276 L--LSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKMAIQAITIADQRYE-SYSN 332
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDD-VSVVDHWLVN-GKHYAQTSEEWLKRMDNNLAS 239
+ D+I KY F GG +PS ++L +V L + G YA T + W R + L
Sbjct: 333 NVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDYALTLQHWRDRFEQQLPK 392
Query: 240 IKPIMESTYGKDQAVKWTVYWRTFF 264
++ + G D+ ++ WR +F
Sbjct: 393 VRDL-----GYDE--RFIRMWRYYF 410
|
|
| TIGR_CMR|VC_1122 VC_1122 "cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 75/265 (28%), Positives = 131/265 (49%)
Query: 8 DKAKE---QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDG 64
D+AK+ QHY+L ++L L + YS F+ +LE A++A ++ CE+ +L+
Sbjct: 157 DQAKDNIHQHYDLGNELYQLFLDEEMLYSSALFTQPELSLEQAQQAKMQRLCEQLQLKPT 216
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS 123
VL++G GWG++++Y+AQ Y CK+T S+ Q + +++ L L N + ++ D
Sbjct: 217 DHVLEIGTGWGAMAIYMAQHYG-CKVTTTTISEEQYAYAQQKITALGLNNQITLLKQDYR 275
Query: 124 TFEMEASYDRIYSIEMFEHM-KNY-QNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTN 181
+ YD++ SIEM E + K Y L + +K + + Y +N
Sbjct: 276 L--LSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKMAIQAITIADQRYE-SYSN 332
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDD-VSVVDHWLVN-GKHYAQTSEEWLKRMDNNLAS 239
+ D+I KY F GG +PS ++L +V L + G YA T + W R + L
Sbjct: 333 NVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDYALTLQHWRDRFEQQLPK 392
Query: 240 IKPIMESTYGKDQAVKWTVYWRTFF 264
++ + G D+ ++ WR +F
Sbjct: 393 VRDL-----GYDE--RFIRMWRYYF 410
|
|
| TIGR_CMR|BA_3460 BA_3460 "cyclopropane-fatty-acyl-phospholipid synthase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 5.3e-22, P = 5.3e-22
Identities = 75/280 (26%), Positives = 133/280 (47%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY++ F+KL L + YSC YF + +L A+ + ++ L+ G T+LD+GCG
Sbjct: 115 HYDIGNDFYKLWLDETMTYSCAYFQNEQDSLTTAQHNKVNHILKKLNLQKGDTLLDIGCG 174
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG L A++Y K G+ S+ Q E+ + L + VE+ + D + + +D
Sbjct: 175 WGELITAAAKQYG-VKAMGVTLSEEQYAKASERIKQEGLTDLVEVSLLDYRDIKNQ-KFD 232
Query: 133 RIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF 190
+I S+ M EH+ N + ++ + + + +H C + A + TN WI KY
Sbjct: 233 KIVSVGMIEHVGKDNITQYFETVNTLLNDGGISLLH--CITSPA-NGGATNG--WIEKYI 287
Query: 191 FTGGTMPSANLLL--YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTY 248
F GG +P+ N L+ + +VD + +HY +T + W + +N + ++
Sbjct: 288 FPGGYVPAVNELITNMTNEQFFIVDVESLR-RHYGKTLQHWARNFENVMEEVRKT----- 341
Query: 249 GKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
KD+ ++ WR + A A F N + + F+F K
Sbjct: 342 -KDE--RFIRMWRLYLNACAASFFTGNID---LHQFVFTK 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5C9L6 | CNMT_THLFG | 2, ., 1, ., 1, ., 1, 4, 0 | 0.5563 | 0.9931 | 0.8005 | N/A | no |
| C3SBW0 | PNMT_THLFG | 2, ., 1, ., 1, ., n, 1, 4 | 0.5068 | 0.9931 | 0.8117 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.79 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 291 | |||
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 6e-70 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 2e-44 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 9e-40 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 8e-15 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-13 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-11 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-10 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 4e-10 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 7e-10 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-09 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 3e-09 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 2e-07 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 7e-07 | |
| PRK08287 | 187 | PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-meth | 2e-06 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 4e-06 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 5e-06 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 7e-06 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 9e-06 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 1e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-05 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 3e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 5e-05 | |
| TIGR00138 | 181 | TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth | 1e-04 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 2e-04 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 2e-04 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 3e-04 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 4e-04 | |
| pfam02527 | 184 | pfam02527, GidB, rRNA small subunit methyltransfer | 4e-04 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 5e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.001 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 0.001 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.003 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 0.004 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 6e-70
Identities = 84/287 (29%), Positives = 135/287 (47%), Gaps = 19/287 (6%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
+ + + HY+L F++L L YSC YF D TLE+A++A L+L E+
Sbjct: 10 RHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLG 69
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 119
L+ G T+LD+GCGWG L++Y A++Y + G+ S+ Q + E++ L+ NVE+ +
Sbjct: 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128
Query: 120 ADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHF 177
D F E +DRI S+ MFEH+ +NY + KK+ +K + +H
Sbjct: 129 QDYRDF--EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI----TGPDQ 182
Query: 178 EDTNDDDWITKYFFTGGTMPSANLLL-YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 236
E D+I KY F GG +PS + +L + VV HYA+T W +R + N
Sbjct: 183 EFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEAN 242
Query: 237 LASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 283
+ + + + W + A A F + + T
Sbjct: 243 RDEAIALYDERFYR--------MWELYLAACAAAFRAGYIDVFQFTL 281
|
Length = 283 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-44
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 14/232 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F+ +L +YSC Y+ DA TLE+A++A L+L C + +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFEAMLDPRMQYSCGYWKDAD-TLEEAQEAKLDLICRKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y A+ Y + G+ S Q++ +E+C L VEI + D ++ +
Sbjct: 176 CGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLP---VEIRLQDYR--DLNGQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY+ + + + +K D L +H T + DTN D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH-----TIGSNKTDTNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
F G +PS + + + V++ W G Y +T W + + +
Sbjct: 285 IFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELA 336
|
Length = 383 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 9e-40
Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 25/272 (9%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY+L FF L L YSC YF TLE+A++A L+L ++ L+ G T+LD+GCG
Sbjct: 13 HYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKPGMTLLDIGCG 72
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG L A++Y + + G+ SK Q + ++ LQ VE+++ D F+ +D
Sbjct: 73 WGGLMRRAAERY-DVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLLQDYRDFDEP--FD 129
Query: 133 RIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDD----WI 186
RI S+ MFEH+ +NY KK+ + L+ + H H ++T++ +I
Sbjct: 130 RIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLL----HTITGLHPDETSERGLPLKFI 185
Query: 187 TKYFFTGGTMPSANLLL-YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIME 245
KY F GG +PS ++++ + V+ HYA+T + W + + N +
Sbjct: 186 DKYIFPGGELPSISMIVESSSEAGFTVEDVESLRPHYAKTLDLWAENLQANKDEAIAL-- 243
Query: 246 STYGKDQAVKWTVYWRTFFIAVAELF--GYNN 275
++ W +Y A F GY +
Sbjct: 244 --QSEEFYRMWMLYLT----GCAVAFRIGYID 269
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-15
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
G VLD+GCG GSL++ +A+ + ++TG+ S E E ++ + + D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 123 ST-FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168
++ +D ++ + + LL ++ +K L ++
Sbjct: 61 PDALDLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
L+ G VLD+GCG G L+ +A+K ++ GI S+ E +E + L +NVE I
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 120 ADISTFEM----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH-KTFA 174
DI + S+D + S E+ H+ + +L++I + +K +L V
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELP 120
Query: 175 YHFEDTN 181
ED
Sbjct: 121 ALLEDLE 127
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-11
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125
VLD+GCG G+L+L +A ++TG+ S E + L NVE++ D
Sbjct: 1 RVLDLGCGTGALALALA-SGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 126 EMEA--SYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHF 168
EA S+D I S H +++ L++ + +K +L +
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-10
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---CRVLELQNVEIIVADIST 124
LD+GCG G+L + + + TG+ S E E+ +L+ V + V D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163
+ S+D + + + H+ + + +L+ + + +K +L
Sbjct: 61 LD-PGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-10
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 45 EDAEKAMLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 103
E+ + L RL+ G VLD+GCG G L + ++ +TG+ S
Sbjct: 3 RQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRER--GFDVTGVDPSPAAVLIF 60
Query: 104 EEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163
YD I + E+ EH+ + LL+++ + +K +L
Sbjct: 61 SLFDAPDPAVL-------------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL 107
Query: 164 FVHHFCHKTFAYHFED 179
+ A F +
Sbjct: 108 LISTPLADDDARLFAN 123
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-10
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTF 125
VLD GCG+GS + +A+++ + ++ G S Q E E+ R L LQ + I D +
Sbjct: 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD 62
Query: 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163
+YD ++ E+ H+K+ +L IS+ +K+ L
Sbjct: 63 PFPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHL 100
|
Length = 224 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-09
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--F 125
LDVGCG G L+ +A++ ++TG+ S E + R + + +V D F
Sbjct: 1 LDVGCGTGLLAEALARRG-GARVTGVDLSP---EMLA-LAR--KRAPRKFVVGDAEDLPF 53
Query: 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
+ S+D + S + H+ + + L++I++ +K L +
Sbjct: 54 P-DESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
RL G + D+G G GS+++ A+ N ++ I + + IE R + N+ I+
Sbjct: 16 RLRPGDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSNIVIVE 75
Query: 120 AD 121
D
Sbjct: 76 GD 77
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
R G + D+G G GS+++ A + ++ I + E IE + N+E++
Sbjct: 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE 90
Query: 120 ADIS-TFEMEASYDRIY 135
D S D I+
Sbjct: 91 GDAPEALPDLPSPDAIF 107
|
Length = 187 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 119
L+ G VLDVGCG G Y+A+ + + + GI S F E R + + +VE V
Sbjct: 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALE--RAIGRKCSVEFEV 320
Query: 120 ADISTFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
AD + + S+D IYS + H+++ L + KW+K + + +C
Sbjct: 321 ADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371
|
Length = 475 |
| >gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ L ++DVG G GS+S+ A ++ + ++T I + I+E + N++
Sbjct: 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNID 84
Query: 117 IIVADISTFEMEASYDRIY 135
II + E+ D I+
Sbjct: 85 IIPG-EAPIELPGKADAIF 102
|
Length = 187 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ----KEFIEEQ--CRVLELQNVEIIV 119
++DVGCG G S Y+A+KY + GI S Q Q + Q V
Sbjct: 121 RIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQGLSDKVSFQ-----V 174
Query: 120 AD--ISTFEMEASYDRIYSIEMFEHM 143
AD FE + +D ++S+E EHM
Sbjct: 175 ADALNQPFE-DGQFDLVWSMESGEHM 199
|
Length = 340 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-QCRVLELQN 114
R L G VLDVGCG G LS +A+ +TGI S ++ IE + LE
Sbjct: 53 RLRFDLP-GLRVLDVGCGGGILSEPLARL--GASVTGIDAS---EKPIEVAKLHALE-SG 105
Query: 115 VEIIVADISTFEMEA---SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
V I + ++ + +D + +E+ EH+ + ++ L+ +K +K +LF+
Sbjct: 106 VNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159
|
Length = 243 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115
++ G VLDV CG G ++L +A+ ++ G+ S++ E E+ + +QNV
Sbjct: 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNV 103
Query: 116 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
E +V D F + S+D + ++ + LK++
Sbjct: 104 EFVVGDAENLPFP-DNSFDAVTISFGLRNVTDIDKALKEM 142
|
Length = 238 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-06
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI- 122
G VLD+GCG+G L +A++ + ++T + + E L+N E+ +D+
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91
Query: 123 STFEMEASYDRIYS 136
S E +D I S
Sbjct: 92 SAVE-PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+ G VLD+GCG+G L L +A+K K+T + + E + ++N E+ +
Sbjct: 156 PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215
Query: 121 DISTFEMEASYDRIYS 136
++ +E +D I S
Sbjct: 216 NLYE-PVEGKFDLIIS 230
|
Length = 300 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 29/127 (22%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEIIVAD 121
+LD+G G G+L L +AQ+ KI G+ + Q+E E R + L + +++I AD
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGV---EIQEEAAEMAQRNVALNPLEERIQVIEAD 103
Query: 122 I---------STFEM------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160
I ++F++ + + + +I E + ++L++ +K +K
Sbjct: 104 IKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163
Query: 161 -TLLFVH 166
L FVH
Sbjct: 164 GRLAFVH 170
|
Length = 248 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 26/123 (21%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--------QNV 115
G VLD G G G+ L A+ + ++ G+ E E + V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGV-------ELDPEAAALARRRLALAGLAPRV 53
Query: 116 EIIVADISTFE--MEASYDRI-----YSIEMFEHMKN---YQNLLKKISKWMKED-TLLF 164
++V D + S+D + Y + N Y L + +K L+
Sbjct: 54 RVVVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
Query: 165 VHH 167
+
Sbjct: 114 ITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRV 109
M+ + E L+ G VL++G G G + +A+ + + I E E + R
Sbjct: 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
Query: 110 LELQNVEIIVAD-ISTFEMEASYDRIY 135
L L NV +IV D +E A YDRIY
Sbjct: 125 LGLDNVIVIVGDGTQGWEPLAPYDRIY 151
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
++ G VLDVGCG G+ + +A++ ++ GI S+ +E+ NVE +
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75
Query: 120 ADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKI 153
D S+D + S + +H+++ L +I
Sbjct: 76 GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEI 110
|
Length = 241 |
| >gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEII 118
DG V+D+G G G + +A K+T + N K + F+ E L L NVEI+
Sbjct: 39 EYLDGKRVIDIGSGAGFPGIPLAIARPELKLTLLESNHK-KVAFLREVKAELGLNNVEIV 97
Query: 119 VADISTFEMEASYDRIYS------IEMFEHMKNYQNLLKKISKWM 157
F+ E +D I S + E NLLK ++
Sbjct: 98 NGRAEDFQHEEQFDIITSRALASLNVLLELT---LNLLKVGGYFL 139
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110
M+ + L+ G VL++G G G + +A+ ++ I + E L
Sbjct: 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL 117
Query: 111 ELQNVEIIVADIST-FEMEASYDRIY 135
+NV + D S + EA YDRI
Sbjct: 118 GYENVTVRHGDGSKGWPEEAPYDRII 143
|
Length = 209 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 107
M+ + CE L++G VL++G G G ++ I K + K+ I E ++
Sbjct: 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--SGKVVTIERIPELAEKAKKTL 121
Query: 108 RVLELQNVEIIVADIST-FEMEASYDRIY 135
+ L NVE+IV D + +E A YDRIY
Sbjct: 122 KKLGYDNVEVIVGDGTLGYEENAPYDRIY 150
|
Length = 212 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126
V+D+GCG G+ + +A+++ + ITGI +S + + + L + AD+ T++
Sbjct: 34 VVDLGCGPGNSTELLARRWPDAVITGIDSS---PAMLAKAAQ--RLPDATFEEADLRTWK 88
Query: 127 MEASYDRIYSIEMF----EHMKNYQNLL 150
E D +++ + +H + L+
Sbjct: 89 PEQPTDLLFANAVLQWLPDHPELLPRLV 116
|
Length = 257 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRV 109
M + E L+ G VL++G G G L+ A+ + I + E
Sbjct: 61 MHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK 120
Query: 110 LELQNVEIIVAD-ISTFEMEASYDRIY 135
L L+NV ++V D + A YD I+
Sbjct: 121 LGLENVIVVVGDGRQGWPEFAPYDAIH 147
|
Length = 210 |
| >gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQK-EFIEEQCRVLELQNVEIIVADISTF 125
V DVG G G + +A + + K+T + S +K F+EE + L L+NV I+ A +
Sbjct: 52 VADVGSGAGFPGIPLAIAFPDKKLTLL-ESLLKKINFLEELKKELNLENVTIVHARAEEY 110
Query: 126 EMEASYDRIYS--IEMFEHMKNY-QNLLKKISKWM 157
+ E YD I S + + + LLK ++
Sbjct: 111 QHEEQYDVITSRAVASLNELTEWALPLLKPGGYFL 145
|
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115
+ + G VLDVGCG G LS +A+ +N +TGI S+ E + + L +
Sbjct: 38 RKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN--VTGIDASEENIEVAKLHAKKDPLLKI 95
Query: 116 EIIVADISTF--EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
E + + S+D + +E+ EH+ + Q ++ ++ +K +LF
Sbjct: 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFF 147
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 13/145 (8%)
Query: 37 FSDASKTLED-------AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89
F+ A+KT + K +L L E+ VLD+GCG G L+ + +++ +
Sbjct: 2 FNKAAKTYDRHAKIQREMAKRLLALLKEKGIFIPAS-VLDIGCGTGYLTRALLKRFPQAE 60
Query: 90 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQN 148
S Q + +NV+ I D + ++S+D I S + +
Sbjct: 61 FIANDISAGM----LAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQ 116
Query: 149 LLKKISKWMKEDTLLFVHHFCHKTF 173
L ++++ +K LL F T
Sbjct: 117 ALSELARVLKPGGLLAFSTFGPGTL 141
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.001
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
L + VLD+G G G YI +KY ++ IC +K + R + +E
Sbjct: 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDIC----EKMVNIAKLRNSDKNKIEFEA 105
Query: 120 ADISTFEM-EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169
DI + E ++D IYS + H+ + + L +K KW+K + +L + +C
Sbjct: 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158
|
Length = 263 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.003
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 60 RLEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 118
RL+ G VLD+G G G+++L +A++ + ++T + S + L L NVE +
Sbjct: 83 RLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVEFL 142
Query: 119 VAD 121
+D
Sbjct: 143 QSD 145
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN 114
R + G VL+ G G G+L+ Y+A+ +T + + E L +
Sbjct: 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146
Query: 115 -VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
V + + D+ E D + F + + N+L+ +S +K
Sbjct: 147 RVTLKLGDVREGIDEEDVDAV-----FLDLPDPWNVLEHVSDALKPGG 189
|
Length = 256 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 100.0 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.95 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.91 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.9 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.87 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.87 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.86 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.86 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.85 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.84 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.82 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.82 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.81 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.8 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.8 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.79 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.78 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.78 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.77 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.77 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.76 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.76 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.76 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.75 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.74 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.74 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.74 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.73 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.73 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.72 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.71 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.71 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.71 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.7 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.7 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.7 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.7 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.7 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.7 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.7 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.68 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.68 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.67 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.66 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.65 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.65 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.65 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.65 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.65 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.65 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.65 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.65 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.64 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.64 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.64 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.63 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.63 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.63 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.62 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.62 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.62 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.61 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.61 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.61 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.61 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.6 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.6 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.59 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.59 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.59 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.58 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.58 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.58 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.57 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.57 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.57 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.57 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.57 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.57 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.57 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.56 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.55 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.55 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.55 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.55 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.55 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.54 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.53 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.53 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.53 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.53 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.52 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.51 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.5 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.5 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.49 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.48 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.48 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.47 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.47 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.46 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.45 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.45 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.44 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.43 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.43 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.43 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.41 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.41 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.41 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.4 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.38 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.37 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.37 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.37 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.37 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.37 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.36 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.35 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.33 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.32 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.31 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.29 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.29 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.28 | |
| PLN02366 | 308 | spermidine synthase | 99.28 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.28 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.27 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.27 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.27 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.27 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.26 | |
| PLN02476 | 278 | O-methyltransferase | 99.25 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.24 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.24 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.24 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.23 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.22 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.22 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.22 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.2 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.2 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.18 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.18 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.17 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.16 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 99.15 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.15 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.15 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.14 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.13 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.13 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.12 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.12 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.12 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.12 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.11 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.11 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.11 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.1 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.08 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.08 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.07 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.06 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.05 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.04 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.04 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 99.04 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 99.04 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.03 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.02 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.01 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 99.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.0 | |
| PLN02823 | 336 | spermine synthase | 98.96 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.95 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.95 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.94 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.93 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.91 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.91 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.91 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.9 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.88 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.86 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.85 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.84 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.84 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.84 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.83 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.83 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.83 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.8 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.79 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.78 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.77 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.75 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.73 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.71 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.71 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.71 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.64 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.63 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.62 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.62 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.59 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.59 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.58 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.58 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.57 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.52 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.51 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.48 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.47 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.45 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.41 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.41 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.4 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.38 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.37 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.37 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.37 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.36 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.29 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.29 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.22 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.21 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.18 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.17 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.15 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.15 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.14 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.12 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.08 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.05 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.04 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.03 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.02 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.01 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.96 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.9 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.79 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.77 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.75 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.69 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.61 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.59 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.52 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.5 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.5 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.42 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.42 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.38 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.34 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.31 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.21 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.19 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.13 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.11 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.08 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.07 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.04 | |
| PHA01634 | 156 | hypothetical protein | 97.02 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.9 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.9 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 96.85 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.84 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.83 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.57 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.56 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.52 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.48 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.45 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.45 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.37 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.32 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.24 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.22 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.16 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.14 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.0 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.97 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.96 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.96 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.94 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.9 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.9 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.87 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.86 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 95.82 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 95.76 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.7 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.64 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.5 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.49 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.45 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.42 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 95.29 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.17 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.07 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 94.91 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.71 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.59 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.34 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.33 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 94.1 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.09 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 93.96 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 93.95 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.92 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 93.87 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.63 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.55 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.48 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 93.46 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.44 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 93.43 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 93.39 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 93.25 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.13 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.11 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.07 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 92.95 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 92.72 | |
| cd05565 | 99 | PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en | 92.66 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 92.56 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 92.54 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.42 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.37 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.3 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.27 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.14 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.06 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 92.01 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 91.92 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 91.92 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 91.87 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 91.86 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 91.79 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.56 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 91.38 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.36 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.33 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 91.29 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 91.29 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 91.19 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.17 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 91.01 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 90.83 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.76 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.73 | |
| cd05564 | 96 | PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic | 90.71 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 90.37 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 90.06 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.97 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 89.88 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 89.85 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 89.83 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.68 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 89.48 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 89.47 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 89.41 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 89.05 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.05 | |
| PLN02494 | 477 | adenosylhomocysteinase | 88.95 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 88.85 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 88.84 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.64 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 88.58 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.54 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 88.45 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.37 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 88.31 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 88.3 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 88.23 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 88.14 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 88.06 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 88.05 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.97 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 87.87 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 87.87 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 87.42 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 87.37 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 87.35 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 87.26 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 87.12 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 87.01 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 86.97 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.96 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.79 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 86.77 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 86.77 | |
| PRK13699 | 227 | putative methylase; Provisional | 86.74 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 86.64 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 86.05 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 85.94 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 85.85 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 85.76 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.53 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 85.44 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 85.44 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 85.43 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 85.03 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 84.93 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 84.77 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 84.7 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 84.64 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 84.63 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 84.53 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.51 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 84.37 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 83.7 | |
| PRK09590 | 104 | celB cellobiose phosphotransferase system IIB comp | 83.61 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 83.58 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.47 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 83.46 | |
| KOG2811 | 420 | consensus Uncharacterized conserved protein [Funct | 83.45 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 83.25 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.23 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 83.08 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 83.04 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 82.87 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 82.78 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 82.72 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 82.67 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 82.64 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 82.63 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 82.48 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.42 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 82.3 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 82.28 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.17 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 81.37 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 81.37 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.07 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 81.01 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 81.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 80.79 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 80.79 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 80.7 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 80.63 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 80.47 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 80.33 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 80.14 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.12 |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=340.38 Aligned_cols=268 Identities=32% Similarity=0.591 Sum_probs=242.2
Q ss_pred ccccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHH
Q 022864 3 IAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIA 82 (291)
Q Consensus 3 ~~~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la 82 (291)
...++.+++++|||++++||+.|+|++|.|||++|+.+..+++++|.++++.+++++.+.||++|||||||+|.+++++|
T Consensus 12 ~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA 91 (283)
T COG2230 12 SKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAA 91 (283)
T ss_pred cccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHH
Confidence 44577889999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHHHhcccc
Q 022864 83 QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKE 159 (291)
Q Consensus 83 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~Lkp 159 (291)
+++ +++|+|+++|+++.+.++++++..|++ +++++..|+.++. ++||.|+|.++++|+. +.+.+|+++.++|+|
T Consensus 92 ~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 92 EEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred HHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 998 999999999999999999999999996 8999999999986 4599999999999994 599999999999999
Q ss_pred CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHH
Q 022864 160 DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238 (291)
Q Consensus 160 gG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~ 238 (291)
||.+++++++....+.. ....|+.+|+||+|.+|+...+.. ..+....+..|...+.||.+|+..|.++|.++..
T Consensus 169 ~G~~llh~I~~~~~~~~----~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~ 244 (283)
T COG2230 169 GGRMLLHSITGPDQEFR----RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRD 244 (283)
T ss_pred CceEEEEEecCCCcccc----cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHH
Confidence 99999999988775542 468899999999999998887777 4454555666888899999999999999999999
Q ss_pred hHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022864 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
++.+. ++ .++++.|..|+.+|+.+|+.|+ .++.||++.|
T Consensus 245 ~a~~~----~~----e~~~r~w~~yl~~~~~~Fr~~~---~~~~q~~~~k 283 (283)
T COG2230 245 EAIAL----YD----ERFYRMWELYLAACAAAFRAGY---IDVFQFTLTK 283 (283)
T ss_pred HHHHH----hh----HHHHHHHHHHHHHHHHHhccCC---ceEEEEEeeC
Confidence 98876 34 3789999999999999999988 5578887764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=345.72 Aligned_cols=266 Identities=36% Similarity=0.675 Sum_probs=208.2
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022864 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 84 (291)
.+++++|++|||++++||+.+||++|+|||++|+++..+++++|.++++.+++++++++|.+|||||||+|.++..++++
T Consensus 4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 4 KQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp ---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred chHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022864 85 YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG 161 (291)
+ +++|+|+++|+++.+.+++++++.|+ +++++..+|..+++ .+||.|+|..+++|+ ++...+++++.++|||||
T Consensus 84 ~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 84 Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG 160 (273)
T ss_dssp H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE
T ss_pred c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc
Confidence 8 89999999999999999999999998 47999999999876 499999999999999 678999999999999999
Q ss_pred eEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhH
Q 022864 162 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240 (291)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~ 240 (291)
+++++.++....+..........|+.+|+||++.+|+...+.. +......+..|.+.+.||.+|++.|+++|.++..++
T Consensus 161 ~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i 240 (273)
T PF02353_consen 161 RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANREEI 240 (273)
T ss_dssp EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998887655433223345899999999999999887766 443333455678889999999999999999999988
Q ss_pred hhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE
Q 022864 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHF 284 (291)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 284 (291)
.++ |+ .+++|.|+.|+.+|+.+|+.|. +++.||
T Consensus 241 ~~~----~~----~~f~r~w~~yl~~~~~~F~~g~---~~~~Q~ 273 (273)
T PF02353_consen 241 IAL----FD----EEFYRMWRYYLAYCAAGFRAGS---IDVFQI 273 (273)
T ss_dssp HHH----SH----HHHHHHHHHHHHHHHHHHHTTS---CEEEEE
T ss_pred HHh----cC----HHHHHHHHHHHHHHHHHHHCCC---CeEEeC
Confidence 765 44 4789999999999999999988 557775
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=303.62 Aligned_cols=261 Identities=30% Similarity=0.653 Sum_probs=226.1
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022864 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 85 (291)
.++..+++|||++++||+.+++++|+|+|++|.. ..+++++|.++++.+++++...++.+|||||||+|.++..+++..
T Consensus 111 ~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~ 189 (383)
T PRK11705 111 RAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY 189 (383)
T ss_pred hHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC
Confidence 3567788999999999999999999999999974 478999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHHHhccccCeeE
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l 163 (291)
+++|+|+|+|+++++.+++++. ++ ++++...|+.++ +++||+|++..+++|+. ++..+++++.++|||||.+
T Consensus 190 -g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~l 263 (383)
T PRK11705 190 -GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLF 263 (383)
T ss_pred -CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEE
Confidence 7899999999999999998874 34 588888888775 36899999999999983 5678999999999999999
Q ss_pred EEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022864 164 FVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~~~~ 243 (291)
++++++..... .....|+.+|+||++.+|+...+....+....+..|...+.||.+|+..|.++|.++..++.+
T Consensus 264 vl~~i~~~~~~-----~~~~~~i~~yifp~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~- 337 (383)
T PRK11705 264 LLHTIGSNKTD-----TNVDPWINKYIFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD- 337 (383)
T ss_pred EEEEccCCCCC-----CCCCCCceeeecCCCcCCCHHHHHHHHHCCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 99887655432 124679999999999999877777665554556677888999999999999999999887754
Q ss_pred HHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 244 MESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
.|++ .+++.|+.|+.+|+.+|+.|. +++.|+++.||
T Consensus 338 ---~~~~----~~~r~w~~yl~~~~~~F~~~~---~~~~q~~~~~~ 373 (383)
T PRK11705 338 ---NYSE----RFYRMWRYYLLSCAGAFRARD---IQLWQVVFSPR 373 (383)
T ss_pred ---hCCH----HHHHHHHHHHHHHHHHHhCCC---ceEEEEEEEeC
Confidence 4664 689999999999999999988 67999999995
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=198.36 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=146.8
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEEcCCcchHHH
Q 022864 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERSRL-----EDGHTVLDVGCGWGSLSL 79 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~ 79 (291)
....+..|||..+++|+.++++.++. ++|+.+ ..+..+++.++++.+++.+.. .++.+|||||||+|.++.
T Consensus 57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~--g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~ 134 (340)
T PLN02244 57 LKEGIAEFYDESSGVWEDVWGEHMHH--GYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSR 134 (340)
T ss_pred HHHHHHHHHccchHHHHHHhCCccee--eccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHH
Confidence 45678899999999999999988765 888764 578999999999999998877 678899999999999999
Q ss_pred HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhcc
Q 022864 80 YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 80 ~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L 157 (291)
.+++++ +++|+|+|+|+.+++.++++++..++ +++.++.+|+.+++++ ++||+|++..+++|+++...+++++.++|
T Consensus 135 ~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL 213 (340)
T PLN02244 135 YLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVA 213 (340)
T ss_pred HHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHc
Confidence 999887 78999999999999999999888877 4799999999998766 89999999999999999999999999999
Q ss_pred ccCeeEEEEeeccCC
Q 022864 158 KEDTLLFVHHFCHKT 172 (291)
Q Consensus 158 kpgG~l~~~~~~~~~ 172 (291)
||||.+++.++.+..
T Consensus 214 kpGG~lvi~~~~~~~ 228 (340)
T PLN02244 214 APGGRIIIVTWCHRD 228 (340)
T ss_pred CCCcEEEEEEecccc
Confidence 999999998876644
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-25 Score=175.51 Aligned_cols=213 Identities=20% Similarity=0.275 Sum_probs=158.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+-...++..+...+..+|.|||||+|..+..|++++|++.++|+|.|++|++.|+++ +++++|..+|+..+.+++
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~~ 91 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPEQ 91 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCCC
Confidence 335567778888889999999999999999999999999999999999999888654 358999999999998888
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCccccccc---CCccchhhhhcc---CCCCCCcHHHHH
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED---TNDDDWITKYFF---TGGTMPSANLLL 203 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~w~~~~~~---~~~~~~~~~~~~ 203 (291)
+.|+++++.+|+++++...+|.++...|.|||+|.++.|.....+++... .....|-...-- ....+++....-
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999998887776533 122245443211 123455544444
Q ss_pred Hh-hcCcEEEEeeecCCCcH---HHHHHHHHHH---------HHh-----cHHhHhhhHHhccC-cchhHHHHHHHHHHH
Q 022864 204 YF-QDDVSVVDHWLVNGKHY---AQTSEEWLKR---------MDN-----NLASIKPIMESTYG-KDQAVKWTVYWRTFF 264 (291)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~y---~~tl~~w~~~---------l~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 264 (291)
.. .....-++.|.+.+.|- +..+-+|.+. |.+ -...+.+++.+.|+ +.+|++.|++.|.|+
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFi 251 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFI 251 (257)
T ss_pred HHhCcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEE
Confidence 33 34445678898877664 3456666652 211 12335555666666 556667777777666
Q ss_pred HHH
Q 022864 265 IAV 267 (291)
Q Consensus 265 ~~~ 267 (291)
+|.
T Consensus 252 VA~ 254 (257)
T COG4106 252 VAT 254 (257)
T ss_pred EEe
Confidence 543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=169.55 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=148.8
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
.+|||||||+|..+..+++.+|+.+|+|+|+|+++++.+++++...++ +++.++.+|+...+.+++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 379999999999999999988788999999999999999999988877 4789999999776555789999999999999
Q ss_pred ccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHH-HHh-hcCcEEEEeeecCCCc
Q 022864 144 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLL-LYF-QDDVSVVDHWLVNGKH 221 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 221 (291)
++...+++++.++|||||.+++.++....... ....+... ..++.... ..+ ..++.+++. ...+.+
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~------~~~s~~~~~~~l~~~Gf~~~~~-~~~~~~ 148 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSA-----IEHEETTS------YLVTREEWAELLARNNLRVVEG-VDASLE 148 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-----cccccccc------ccCCHHHHHHHHHHCCCeEEEe-EECcHh
Confidence 99999999999999999999998775432110 01111111 12333322 222 345666554 344677
Q ss_pred HHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 022864 222 YAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 290 (291)
Q Consensus 222 y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 290 (291)
|.+++ |...|.++..++... .++ ..+.+.|. |+..++++|+.|. ++.+|++++|+.
T Consensus 149 ~~~~l--~~~~f~~~~~~~~~~---~~~----~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~k~~ 204 (224)
T smart00828 149 IANFL--YDPGFEDNLERLYQD---DLD----EVTKRHFR-GIANLGKLLEKGL---ASYALLIVQKDE 204 (224)
T ss_pred Hhhhc--cChhHHHHHHHhccc---cch----HHHHHHHh-hHHHHHHHHHhch---HhhEEEEEeccc
Confidence 87765 788887777666553 233 24667775 4456666698877 789999999985
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=161.43 Aligned_cols=122 Identities=23% Similarity=0.352 Sum_probs=110.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
-+.+++.+...+|.+|||+|||||..+..+++..+..+|+|+|+|+.|++.+++++.+.+..+++|+++|++.+|++ .+
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~s 119 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNS 119 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCc
Confidence 34555666666899999999999999999999987789999999999999999999988876699999999999998 99
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
||+|.+...+.++++.+++|+++.|+|||||++++..+..+..
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 9999999999999999999999999999999999988776543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-20 Score=169.55 Aligned_cols=217 Identities=20% Similarity=0.292 Sum_probs=152.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
...+++.+...++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.|++++.... .++.+..+|+...+.+ ++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCC
Confidence 4556666667788999999999999999999876 7899999999999999988765333 3799999999887755 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccC-CCCCCcHHHHHHh--hc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFT-GGTMPSANLLLYF--QD 207 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~--~~ 207 (291)
||+|+|..+++|++++..+++++.++|||||.+++.++....... .. ....++.. +..+++......+ ..
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~-~~~~~~~~~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SP-EFAEYIKQRGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cH-HHHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999998876543221 11 11122212 2234444434333 24
Q ss_pred CcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q 022864 208 DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFR 287 (291)
Q Consensus 208 ~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 287 (291)
++..+. ....+.+|.+++..|...+.++..++.. .++++........| ....+.+..++ .+-+-|+.|
T Consensus 406 GF~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~----~~~~~~~~~~~---~~wg~~~a~ 473 (475)
T PLN02336 406 GFDDVI-AEDRTDQFLQVLQRELDAVEKEKDEFIS----DFSEEDYNDIVGGW----KAKLVRSSSGE---QKWGLFIAK 473 (475)
T ss_pred CCeeee-eecchHHHHHHHHHHHHHHHhCHHHHHH----hcCHHHHHHHHHhH----HHHHhhhcCCc---eeeEEEEEe
Confidence 555553 3344567999999999998887776654 35654444444444 33344444443 334455566
Q ss_pred ec
Q 022864 288 KK 289 (291)
Q Consensus 288 ~~ 289 (291)
|.
T Consensus 474 k~ 475 (475)
T PLN02336 474 KK 475 (475)
T ss_pred cC
Confidence 63
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=154.90 Aligned_cols=244 Identities=17% Similarity=0.243 Sum_probs=156.4
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022864 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~ 92 (291)
+|-+.+...|+..+++..... ..+ .....+++.+.+.++.+|||||||+|..+..+++.+ +++|+|
T Consensus 15 ~y~~~~~~~~e~~~g~~~~~~--------gg~-----~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~g 80 (263)
T PTZ00098 15 QYSDEGIKAYEFIFGEDYISS--------GGI-----EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHG 80 (263)
T ss_pred ccccccchhHHHHhCCCCCCC--------Cch-----HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEE
Confidence 455555667776666532221 112 224567777888899999999999999999998765 789999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+|+.+++.++++... .+++.++.+|+.+.+.+ ++||+|++..+++|++ +...+++++.++|||||.+++.++.
T Consensus 81 iD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 81 VDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999999887653 24799999999887665 7899999999888885 7889999999999999999998875
Q ss_pred cCCcccccccCCccchhhhhccCCCCCCcHHHHHH-h-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhc
Q 022864 170 HKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMEST 247 (291)
Q Consensus 170 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~~~~~~~~ 247 (291)
......... ....++... ...+++...... + ..++..++... ....+.+.+..-++.+.++..++.+ .
T Consensus 159 ~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~l~~aGF~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~----~ 228 (263)
T PTZ00098 159 ADKIENWDE--EFKAYIKKR---KYTLIPIQEYGDLIKSCNFQNVVAKD-ISDYWLELLQVELKKLEEKKEEFLK----L 228 (263)
T ss_pred cccccCcHH--HHHHHHHhc---CCCCCCHHHHHHHHHHCCCCeeeEEe-CcHHHHHHHHHHHHHHHHhHHHHHH----h
Confidence 543211000 000111111 112233333333 3 24566555332 2334445555555555555555443 4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 248 YGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
++++..+.+...|...+.++. .|+ ..||+- .++||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----~~~-~~wg~~--~~~~~ 263 (263)
T PTZ00098 229 YSEKEYNSLKDGWTRKIKDTK----RKL-QKWGYF--KAQKM 263 (263)
T ss_pred cCHHHHHHHHHHHHHHHHHhh----ccc-cccceE--eecCC
Confidence 676555566666655444443 344 336664 36663
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-21 Score=162.22 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=91.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCcc
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 132 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 132 (291)
+++.+...++.+|||+|||+|..+..+++.. |..+|+|+|+|+.|++.++++....+..+++++++|+++++++ ++||
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EE
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCcee
Confidence 3444566788999999999999999998874 5679999999999999999999988877999999999999887 8999
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
+|++...++.++|..+.++++.|+|||||++++.+++.+..
T Consensus 119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 99999999999999999999999999999999988877643
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=157.43 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=102.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++.+|||+|||.|.++..+|+. |++|+|+|+++.+++.|+..+.+.++ ++++.+..++++... ++||+|+|..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999988 89999999999999999999999988 688999999998766 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
+|++++..+++.+.+.+||||.+++++++....+
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 9999999999999999999999999999865443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=138.26 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=90.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccc-cCCccCCCccEEEEcc-c
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI-STFEMEASYDRIYSIE-M 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~~D~i~~~~-~ 139 (291)
|+.+|||||||+|.++..+++++++.+|+|+|+|+.+++.+++++...+. ++++++++|+ .......+||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 57899999999999999999977799999999999999999999966555 6899999999 4444447899999999 4
Q ss_pred cccc---ccHHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHM---KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++++ ++..++++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4433 456889999999999999999875
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=153.87 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=116.1
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-
Q 022864 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY- 85 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~- 85 (291)
.++.++.+||.-...|....+. +.. ..+....+ .+++.+...++.+|||+|||+|.++..++++.
T Consensus 31 ~~~~v~~~f~~~A~~YD~~~~~-~s~----------g~~~~~r~---~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~ 96 (261)
T PLN02233 31 CANERQALFNRIAPVYDNLNDL-LSL----------GQHRIWKR---MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVG 96 (261)
T ss_pred hHHHHHHHHHHhhhHHHHhhhh-hcC----------ChhHHHHH---HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhC
Confidence 4455777787777777643211 111 01111122 23344566788999999999999999998874
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHH---hCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCe
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRV---LELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG 161 (291)
+..+|+|+|+|++|++.|+++... ...+++.++++|+++++.+ ++||+|+++.++++++++..+++++.++|||||
T Consensus 97 ~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 97 SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGS 176 (261)
T ss_pred CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCc
Confidence 457999999999999999877542 2235799999999998877 789999999999999999999999999999999
Q ss_pred eEEEEeeccCC
Q 022864 162 LLFVHHFCHKT 172 (291)
Q Consensus 162 ~l~~~~~~~~~ 172 (291)
.+++.++..+.
T Consensus 177 ~l~i~d~~~~~ 187 (261)
T PLN02233 177 RVSILDFNKST 187 (261)
T ss_pred EEEEEECCCCC
Confidence 99998876543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=142.16 Aligned_cols=108 Identities=28% Similarity=0.496 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~~ 138 (291)
+.+.+|||+|||+|.++..+++ ..|+.+++|+|+|+++++.++++++..+.++++++++|+.+++ .+++||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 4578999999999999999994 4678999999999999999999999999989999999999976 337999999999
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++++.+...+++++.+.|++||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998775
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-19 Score=152.04 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+....+++.+...++.+|||+|||+|.++..+++++|+.+|+|+|+|+.|++.+++. +++++++|+.++...+
T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~ 88 (255)
T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKP 88 (255)
T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCC
Confidence 345667777777888999999999999999999988889999999999999888652 5789999998875448
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|+|+.+++|++++..+++++.++|||||.+++..++.
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 89999999999999999999999999999999999986653
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=145.91 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
......++..+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. +++.++.+|+..+...
T Consensus 17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~ 91 (258)
T PRK01683 17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPP 91 (258)
T ss_pred hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCC
Confidence 33456677777778889999999999999999999888899999999999999887653 4688999999887655
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+||+|+++.+++++++...+++++.++|||||.+++..+..
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 799999999999999999999999999999999999976543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=145.11 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=104.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
..+++.+...++.+|||+|||+|..+..+++.. |+.+|+|+|+|+.+++.++++....+.++++++.+|+.+.+.+ ++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 456667777889999999999999999999875 5679999999999999999998877777899999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++..+++++++..++++++.++|+|||.+++.+...
T Consensus 115 fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999999999999999999999999999999999876644
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=142.76 Aligned_cols=111 Identities=21% Similarity=0.332 Sum_probs=95.7
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.+++++...++.++++...|+.+.+.+.+||+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 99 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFI 99 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEE
Confidence 344445566789999999999999999986 789999999999999999999888887799999999887666789999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+++.++++++ +...+++++.++|||||++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998874 57889999999999999965533
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=148.77 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--c
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--M 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~ 127 (291)
.+..+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|++++...++ ++++++++|+.++. .
T Consensus 33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 4556666665 45679999999999999999987 78999999999999999999988876 57999999998764 2
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+++||+|++..+++|+.++..+++++.++|||||++++..++..
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 37899999999999999999999999999999999998776543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=136.20 Aligned_cols=115 Identities=22% Similarity=0.270 Sum_probs=97.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.++.+.-.-..+++.+|||+|||+|..+..++...|+.+|+++|+|+.+++.++++++..++++++++.+|+.+....++
T Consensus 33 ~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~ 112 (187)
T PRK00107 33 ILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEK 112 (187)
T ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCC
Confidence 33444332234458899999999999999999888889999999999999999999999998779999999998765578
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|+++. +.++..+++.+.+.|||||++++....
T Consensus 113 fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 113 FDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999975 356788999999999999999987543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=151.16 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
.++.+|||||||+|.++..+++. +.+|+|+|+++++++.+++++...+. .++.++++|+++++.. ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 35779999999999999999864 78999999999999999988765544 4799999999987655 78999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++|+.++..+++.+.++|||||.+++.+++..
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999999999999999999999999987653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=125.58 Aligned_cols=94 Identities=23% Similarity=0.421 Sum_probs=82.7
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccH
Q 022864 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 146 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~ 146 (291)
||+|||+|..+..++++ ++.+|+++|+++.+++.++++.... ++.+..+|+.+++++ ++||+|++..+++|+++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999988 6899999999999999988876543 566999999999877 999999999999999999
Q ss_pred HHHHHHHHhccccCeeEEE
Q 022864 147 QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 147 ~~~l~~~~~~LkpgG~l~~ 165 (291)
..+++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-19 Score=144.52 Aligned_cols=107 Identities=28% Similarity=0.457 Sum_probs=92.5
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-----CeEEEEccccCCccCCCccEEEEc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~-----~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
|++|||+|||+|.++..|++. +++|+|+|+++.+++.|++....... . ++.+.+.|+++.. ++||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH
Confidence 488999999999999999987 89999999999999999998544433 1 2567777777765 569999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
.+++|+.|+..+++.+.+.|||||.+++++.++....
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS 202 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILS 202 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHH
Confidence 9999999999999999999999999999998775443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-18 Score=137.89 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=92.8
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...++ ++.+...|+...+.+.+||+|
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEE
Confidence 333444555679999999999999999986 78999999999999999998888877 488888888765555789999
Q ss_pred EEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+++.+++++ .+...+++.+.++|||||++++...
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 999999988 4567899999999999999666443
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=130.59 Aligned_cols=129 Identities=23% Similarity=0.371 Sum_probs=104.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC
Q 022864 34 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 113 (291)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 113 (291)
.|.|+ ...++....-+++.+... ++.+|||+|||+|.++..++++.|..+|+++|+++.+++.+++++..++++
T Consensus 8 ~gvFs--~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~ 81 (170)
T PF05175_consen 8 PGVFS--PPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE 81 (170)
T ss_dssp TTSTT--TTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred CCeeC--CCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 36665 345666666555555443 677999999999999999999988888999999999999999999999986
Q ss_pred CeEEEEccccCCccCCCccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022864 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 114 ~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+++++..|+.+...+++||+|+|+.+++.-.+ ...+++...+.|||||.+++...
T Consensus 82 ~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 82 NVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 69999999988655589999999999876643 57899999999999999987544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=133.01 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++.+|||+|||+|..+..++...|+.+|+++|+|+.+++.+++++++.++++++++++|+.++...++||+|+++. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h--
Confidence 4789999999999999999888778899999999999999999998888878999999999875458999999976 3
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+...+++.+.+.|+|||.+++..
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456678888999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=142.40 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
.|....+.+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++.. .+.++++|++.++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~ 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCc
Confidence 44556667777776666789999999999999998865 7899999999999988876532 3568899999877
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
.+ ++||+|+++.++++.+++..++.++.++|+|||.+++.+++....
T Consensus 99 ~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 66 789999999999999999999999999999999999998876543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=131.81 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.++||+|||.|..+.+|+++ |..|+++|.|+..++.+++.+...++ +|+....|+.+...++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEE
Confidence 344445556779999999999999999998 99999999999999999999988888 599999999998877889999
Q ss_pred EEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++..+++++ +..+.+++++.+.++|||++++.+..
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 998888888 45678999999999999998886653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=121.01 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=95.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-c-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-M-EA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~ 129 (291)
...+++.+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++++..+.+++.++.+|+.... . ..
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 344566667777889999999999999999998877899999999999999999998887778999999877532 1 26
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|++..... ...++++.+.+.|||||.+++...
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 899999977553 446899999999999999988653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-17 Score=140.62 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~ 128 (291)
-+...++..+...++.+|||+|||+|.++..++..+ ...|+|+|+|+.++..++...+..+ ..++.+..+++++++..
T Consensus 108 ~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 108 IKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 345667777777788999999999999999988774 3479999999999876543322222 23688889999888765
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+||+|+|..+++|++++..++++++++|||||.|++.+...
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 789999999999999999999999999999999999987643
|
Known examples to date are restricted to the proteobacteria. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=132.99 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=106.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC------CEEEEEcCCHHHHHHHHHHHHHhCC-C--CeEEEEcccc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN------CKITGICNSKTQKEFIEEQCRVLEL-Q--NVEIIVADIS 123 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~-~--~v~~~~~d~~ 123 (291)
+..+.++...+++++||++||||..+..+.+..+. .+|+++|+||.|++.+++++.+.++ + ++.|+++|++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 34456777788999999999999999999887644 7999999999999999999988777 2 4899999999
Q ss_pred CCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 124 ~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+++++ ..||...+...+..+.+.++.+++++|+|||||++.+-.+....
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 99998 89999999999999999999999999999999999887776544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=141.53 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 129 (291)
+.+.++..+...++.+|||||||+|.++..++..+ ...|+|+|+|+.++..++...+..+. .++.++.+|+++++.++
T Consensus 110 k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 110 KWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred HHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 34555666665678899999999999999999875 34699999999998765543333222 37999999999987668
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|+|..+++|+.++..+++++++.|+|||.+++.+...
T Consensus 189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred CcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 89999999999999999999999999999999999976543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-17 Score=136.53 Aligned_cols=108 Identities=23% Similarity=0.348 Sum_probs=93.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH--CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
..++.+|||+|||+|..+..+++. .|+.+|+|+|+|+.|++.+++++...+. .+++++++|+.+.+. ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 356789999999999999988874 4789999999999999999999987766 379999999998765 458999999
Q ss_pred ccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++++++ +...+++++.+.|||||.+++.+..
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9999985 3467999999999999999998743
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-18 Score=126.23 Aligned_cols=96 Identities=24% Similarity=0.416 Sum_probs=67.6
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---ccCCCccEEEEcccccccc
Q 022864 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~i~~~~~l~~~~ 144 (291)
||||||+|.++..+.+.+|..+++|+|+|+.+++.++++....+..+......+..+. ...++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999988999999999999999888888877654444444443332 2225999999999999999
Q ss_pred cHHHHHHHHHhccccCeeE
Q 022864 145 NYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l 163 (291)
+...+++++.++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=135.09 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCC---CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022864 47 AEKAMLELYCERSRL---EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 123 (291)
.|......+++.+.. ..+.+|||+|||+|.++..+++.++..+++++|+++.+++.++++.. +++.++.+|+.
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~ 90 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchh
Confidence 344444445444432 34579999999999999999998888899999999999988876543 37889999999
Q ss_pred CCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 124 ~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+.+.+ ++||+|+++.++++..++..+++.+.+.|+|||.+++.++....
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 88755 78999999999999999999999999999999999998775543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=136.94 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~ 137 (291)
...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....++++++++.+|+++++.+ +.||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 45688999999999999888777653 4568999999999999999998888887899999999987765 789999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++++.++...+++++.++|||||++++....
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 99999999999999999999999999997654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=140.54 Aligned_cols=114 Identities=21% Similarity=0.143 Sum_probs=96.9
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
...+++.+.. .++.+|||+|||+|.++..+++..++.+|+++|+|+++++.++++.. ..+++++.+|+++.+.+ +
T Consensus 101 r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 101 RDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCC
Confidence 3345554443 46789999999999999999888777899999999999999988654 23688999999988765 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|+++.+++++++...+++++.++|||||.+++..+
T Consensus 178 sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 899999999999999999999999999999999988654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-16 Score=134.22 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++ ++.+...|+.....+++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4559999999999999999986 78999999999999999999988888 79999999887655688999999999998
Q ss_pred cc--cHHHHHHHHHhccccCeeEEEEee
Q 022864 143 MK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 143 ~~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++ +...+++++.++|+|||++++...
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 84 678899999999999999776443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-16 Score=131.60 Aligned_cols=117 Identities=22% Similarity=0.318 Sum_probs=100.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
+.+++.+...++.+|||+|||+|.++..+++.+ |..+++|+|+|+.+++.++++... ...++.+..+|+...+.. ++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCC
Confidence 445666778889999999999999999999886 678999999999999999887322 224799999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++..+++++.++..+++++.++|||||.+++..+..
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 9999999999999999999999999999999999987653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-16 Score=130.32 Aligned_cols=152 Identities=17% Similarity=0.285 Sum_probs=115.9
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022864 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 84 (291)
.+.++.+..+|+....-|..+. ....+ +. .......++..+...++.+|||+|||+|.++..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~ 72 (239)
T PRK00216 7 EEKQEKVAEMFDSIAPKYDLMN-DLLSF--GL-----------HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKA 72 (239)
T ss_pred ccchHHHHHHHHHhhhhHHHHH-HHHhc--CC-----------cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHH
Confidence 3455566777777666665321 10111 00 0122334455555667889999999999999999988
Q ss_pred CC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCe
Q 022864 85 YS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG 161 (291)
.+ ..+++++|+++.+++.+++++...+. .++.++.+|+.+.+.+ +.||+|++..+++++.+...+++++.+.|+|||
T Consensus 73 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG 152 (239)
T PRK00216 73 VGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGG 152 (239)
T ss_pred cCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCc
Confidence 75 58999999999999999998876544 4689999999887655 789999999999999999999999999999999
Q ss_pred eEEEEeecc
Q 022864 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~~~~~~~ 170 (291)
.+++.....
T Consensus 153 ~li~~~~~~ 161 (239)
T PRK00216 153 RLVILEFSK 161 (239)
T ss_pred EEEEEEecC
Confidence 998876644
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=127.27 Aligned_cols=99 Identities=28% Similarity=0.424 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~ 139 (291)
..++.+|||+|||.|.++..+++. +.+++|+|+++.+++. .++.....+..... .+++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 567889999999999999999766 6699999999998776 13444444444433 2389999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++|++++..+++.+.++|||||++++.++...
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999999998653
|
... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-17 Score=118.40 Aligned_cols=94 Identities=19% Similarity=0.430 Sum_probs=79.6
Q ss_pred EEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc-cccc
Q 022864 67 VLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-EMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~-~~l~ 141 (291)
|||+|||+|..+..++..+ |..+++|+|+|+++++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999885 347999999999999999999988777 899999999998755 799999995 4588
Q ss_pred ccc--cHHHHHHHHHhccccCe
Q 022864 142 HMK--NYQNLLKKISKWMKEDT 161 (291)
Q Consensus 142 ~~~--~~~~~l~~~~~~LkpgG 161 (291)
|+. +...+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 884 57889999999999998
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=134.79 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=107.4
Q ss_pred HHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCEE
Q 022864 20 SFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKI 90 (291)
Q Consensus 20 ~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~-----~~~v 90 (291)
+..+.+++.-. ....+|-.....++......+..+++.....++.+|||+|||+|. +++.+++..+ +.+|
T Consensus 57 ~e~~~l~~~lt-i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I 135 (264)
T smart00138 57 EELAELLDLMT-TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKI 135 (264)
T ss_pred HHHHHHHHHhh-cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEE
Confidence 44555544322 222444445566777666666666655444567899999999996 5666666543 4689
Q ss_pred EEEcCCHHHHHHHHHHHH----HhC----------------------C-CCeEEEEccccCCccC-CCccEEEEcccccc
Q 022864 91 TGICNSKTQKEFIEEQCR----VLE----------------------L-QNVEIIVADISTFEME-ASYDRIYSIEMFEH 142 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~----~~~----------------------~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~ 142 (291)
+|+|+|+.+++.|++..- ..+ + ++|.|.++|+.+.+++ ++||+|+|.++++|
T Consensus 136 ~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~y 215 (264)
T smart00138 136 LATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIY 215 (264)
T ss_pred EEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHh
Confidence 999999999999987431 001 1 3689999999997664 89999999999999
Q ss_pred cc--cHHHHHHHHHhccccCeeEEEEe
Q 022864 143 MK--NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~--~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++ +..++++++.+.|+|||++++..
T Consensus 216 f~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 216 FDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 95 45689999999999999999853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=132.88 Aligned_cols=108 Identities=23% Similarity=0.307 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~ 138 (291)
.++.+|||+|||+|..+..+++.+ |+++++|+|+|+.|++.|+++++..+. .+++++++|+.+.+.+ .+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 467899999999999999999864 688999999999999999999877654 4789999999987654 689999999
Q ss_pred cccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 139 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++++++ +...+++++.+.|||||.+++.++..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999984 46789999999999999999987543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=124.87 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=94.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
..+++.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++...++++++++.+|... ..+.+||
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D 99 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKAD 99 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCC
Confidence 344566677788999999999999999999888888999999999999999999988877779999998753 2346899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|++..... ....+++.+.+.|+|||++++....
T Consensus 100 ~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 100 AIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 999987653 4567899999999999999886543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=128.68 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cCCc--cC-CCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~--~~-~~~D~i~~~~ 138 (291)
++.+|||+|||+|..+..+++..|+.+|+|+|+|+.+++.+++++...+++++.++++|+ ..++ .+ ++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 678999999999999999998888889999999999999999999888877899999999 6554 33 7899999976
Q ss_pred cccccc--------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 139 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..+.. ....+++++.++|||||.+++.+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 554322 14679999999999999999976543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.4e-16 Score=137.12 Aligned_cols=127 Identities=13% Similarity=0.185 Sum_probs=101.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--
Q 022864 35 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-- 112 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-- 112 (291)
|.|+.. .++...+ .+++.++...+.+|||+|||+|.++..+++++|..+|+++|.|+.+++.++++++.++.
T Consensus 206 gVFs~~--~LD~Gtr----llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~ 279 (378)
T PRK15001 206 NVFSRT--GLDIGAR----FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA 279 (378)
T ss_pred CccCCC--CcChHHH----HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc
Confidence 777743 4554433 34455555555699999999999999999999999999999999999999999987764
Q ss_pred -CCeEEEEccccCCccCCCccEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEe
Q 022864 113 -QNVEIIVADISTFEMEASYDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 -~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++++...|..+...+.+||+|+|+.+++... ...++++.+.++|+|||.+++..
T Consensus 280 ~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 280 LDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 36889988886643336899999999987542 24578999999999999999874
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=127.15 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.+...+++.+...++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.+++++...+++++.++.+|..+....
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3456667777888999999999999999999998753 457999999999999999999999888899999999875433
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+||+|++.....++ .+.+.+.|+|||++++...
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEEc
Confidence 789999998766544 3457888999999988653
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=123.84 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 128 (291)
+...+++.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.+++++...++. +++++.+|..+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 455667777778889999999999999999988753 469999999999999999999888874 599999999875433
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+||+|++..++.+++ +.+.+.|+|||++++...
T Consensus 140 ~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 7899999998887654 467889999999988543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=125.71 Aligned_cols=115 Identities=24% Similarity=0.353 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
..+++.+...++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++++.. ...++.++.+|+.+.+.+ ++
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCc
Confidence 34445555567899999999999999999988754 699999999999999988765 224789999999987655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|++..+++++.+...+++.+.+.|+|||++++....
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999999999999999999999999999987664
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-16 Score=143.18 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~ 136 (291)
+..++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.|++.++++....+. ++.++++|+.+++ ++ ++||+|++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEE
Confidence 34467899999999999999999888899999999999999999988765554 6888999998865 33 78999999
Q ss_pred ccccccc-------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 137 IEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+.++|++ .+..++++++.++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9988864 25678999999999999999997643
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=125.08 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|++|++.+++. ..++++|+++++.+ ++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 46799999999999999999876 67999999999999988753 23578999998876 8999999999999
Q ss_pred ccccHHHHHHHHHhccccC
Q 022864 142 HMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~Lkpg 160 (291)
+++++.++++++.++|||.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999994
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-15 Score=124.60 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=103.7
Q ss_pred CCccccchhHHHhhcCCC-hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcch
Q 022864 1 MPIAIQTDKAKEQHYELP-TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGS 76 (291)
Q Consensus 1 ~~~~~~~~~~~~~~yd~~-~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~ 76 (291)
|-..++....++.+||.. .+.|....+.. ....-...+..........++..+ ...++.+|||+|||+|.
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~w~~~y~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~ 76 (230)
T PRK07580 3 MFNYLEHKSEVRTYFNRTGFDRWARIYSDA------PVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGS 76 (230)
T ss_pred chhhhhchhhhhHHHhhhccchHHHhhCcC------chhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH
Confidence 344566777888888854 24444433321 111101111112233333444333 24567899999999999
Q ss_pred HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHH
Q 022864 77 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKI 153 (291)
Q Consensus 77 ~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~ 153 (291)
++..+++. +.+|+|+|+|+.+++.++++....+. +++.+..+|+... .++||+|++..+++|++ +...+++.+
T Consensus 77 ~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l 152 (230)
T PRK07580 77 LSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHL 152 (230)
T ss_pred HHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHH
Confidence 99999976 56899999999999999999887766 5789999995432 37899999999998874 556788888
Q ss_pred HhccccCee
Q 022864 154 SKWMKEDTL 162 (291)
Q Consensus 154 ~~~LkpgG~ 162 (291)
.+.+++++.
T Consensus 153 ~~~~~~~~~ 161 (230)
T PRK07580 153 ASLTRGSLI 161 (230)
T ss_pred HhhcCCeEE
Confidence 887654443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=121.99 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=89.3
Q ss_pred HHHHHHH-HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 51 MLELYCE-RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+...++. .++...-.++||+|||.|.++..|+.+ ..+++++|+|+..++.|+++... .++|+++++|+.+..+++
T Consensus 30 K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~~ 105 (201)
T PF05401_consen 30 KYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPEG 105 (201)
T ss_dssp HHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS
T ss_pred HHHHHHHHhcCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCCC
Confidence 4444433 466677789999999999999999988 46899999999999999988764 358999999999987779
Q ss_pred CccEEEEcccccccc---cHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMK---NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|+++.+++++. +...+++++...|+|||.+++.+.
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999995 366799999999999999999776
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=132.66 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=92.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
++.+......+|||+|||+|.++..+++++|..+|+++|+|+.+++.++++++.+++ ..+++..|.... .+++||+|+
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIv 266 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMII 266 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEE
Confidence 333443445589999999999999999998888999999999999999999998887 467788887653 247899999
Q ss_pred Eccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022864 136 SIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+.++|+. .....+++.+.+.|||||.+++...
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999864 3457899999999999999988654
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-15 Score=121.46 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEE
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~ 119 (291)
+...+..+...++.+|||+|||.|..+.+|+++ |.+|+|+|+|+.+++.+.+..... .-.++++++
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 333444443456779999999999999999987 899999999999998753321100 012689999
Q ss_pred ccccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 120 ADISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|+.++... ++||.|+...+++|++ ....+++.+.++|||||++++.+...
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 999987643 6799999999988883 34669999999999999877776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=130.78 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.+...++.+|||||||+|.++..+++++|+.+++++|. +.+++.+++++...++ ++++++.+|+.+.+.+ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-C
Confidence 34456666777889999999999999999999999999999998 7899999999998887 5799999999865443 4
Q ss_pred ccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|+|++..++|+..+ ...+++++.+.|+|||++++.++..
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 799999999988743 3679999999999999999987644
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=123.53 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
-.+...+++.+...++.+|||||||+|..+..+++.. ++.+|+++|+++++++.++++++..+.+++.++.+|......
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 3456667777788899999999999999999998774 346999999999999999999998888889999999877544
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+ .+||+|++......+ .+.+.+.|||||++++..
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 4 789999998776544 245677899999988854
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=121.04 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...+. ++.++.+|+.+.. .++||+|+++.++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCC
Confidence 4456799999999999999999874 3999999999999999999988776 6889999987754 3689999999988
Q ss_pred ccccc---------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 141 EHMKN---------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++.++ ...+++.+.++|||||.+++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 65532 3568999999999999998876544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=119.89 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=93.5
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEEccccCCc--cCCCccEE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFE--MEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~--~~~~~D~i 134 (291)
.+.......||++|||+|..-.+.- .-|+.+||++|+++.|.+.+.+.++++...++. |+.++.++++ ..+++|.|
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred HhcccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeE
Confidence 3444555678999999999866543 236899999999999999999998887555666 9999999987 34999999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++..++..++++.+.++++.++|+|||++++..-
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999999999999999999999999988554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=127.50 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCcchHHHH-HH-HHCCCCEEEEEcCCHHHHHHHHHHHHH-hCC-CCeEEEEccccCCccC-CCccEEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLY-IA-QKYSNCKITGICNSKTQKEFIEEQCRV-LEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~-la-~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~-~~~D~i~~ 136 (291)
.++.+|+|||||.|.++.. ++ ..+|+.+++++|+++++++.|++.++. .++ ++++|..+|+.+.... +.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998865443 33 456889999999999999999999964 676 4699999999986533 78999999
Q ss_pred ccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022864 137 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. +++++ ++..++++++.+.|+|||.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 88887 789999999999999999999976
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=124.35 Aligned_cols=107 Identities=16% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~i~~~~ 138 (291)
+..+|||||||+|.++..+++.+|+.+|+|+|+++.+++.+++++...+++++.++++|+.++. .+ +.+|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999999998888889999999998643 23 5899999987
Q ss_pred ccccccc--------HHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFEHMKN--------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+..+.+. ...+++.+.++|||||.+++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 6554432 157899999999999999987643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-16 Score=122.95 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=115.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~~ 137 (291)
+.|+.+|||+|||.|.+..+|.+.. +++.+|+|++++.+..+.+ + .+.++++|+.+-. ++ ++||.|+++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----r---Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----R---GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----c---CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 4678999999999999999998864 8999999999997766554 3 4678999998732 33 899999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhh-ccCCCCCCcHHHHHHhhcCcEEEEeee
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY-FFTGGTMPSANLLLYFQDDVSVVDHWL 216 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
.+++++.++..+++++.|+ |...+++.|+ ...|..+. +.-.|.||... ...-.|.
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN------------Fg~W~~R~~l~~~GrmPvt~---------~lPy~WY 138 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPN------------FGHWRNRLQLLLRGRMPVTK---------ALPYEWY 138 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecC------------hHHHHHHHHHHhcCCCCCCC---------CCCCccc
Confidence 9999999999999998765 5566666654 34455443 23356666533 2334677
Q ss_pred cCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022864 217 VNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 217 ~~~~~y~~tl~~w~~~l~~~~~~~~~~ 243 (291)
+++....-|+++..+...+.+.+|.+.
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 777655779999999988888887654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=114.77 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=103.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
...+.++...++.+++|||||+|..+..++...|..+|+++|-+++.++..++|+.+.+.+|+.++.+++.+.... ..+
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 3456788899999999999999999999997788999999999999999999999999999999999999886544 479
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
|.|+.... .+.+.+++.+...|||||++++.....++
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999887 36688999999999999999997776544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=119.40 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
......+..++.. ..++.+|||+|||+|..+..+++..|+.+++|+|+|+++++.|+++. +++.+.++|+.+
T Consensus 28 ~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~- 99 (204)
T TIGR03587 28 AAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD- 99 (204)
T ss_pred HHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-
Confidence 3333444444443 34677999999999999999998877889999999999999987653 257788899888
Q ss_pred ccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 126 EME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+.+ ++||+|+++.+++|+. +..++++++.+++ ++.+++....
T Consensus 100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 444 8999999999999984 4677888888886 5677776653
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.1e-15 Score=124.36 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=103.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC
Q 022864 34 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 113 (291)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 113 (291)
.|.|+.. .++... +.+++.+....+.+|||+|||.|.+++.+++..|..+++.+|.|...++.++++++.++++
T Consensus 135 pGVFS~~--~lD~GS----~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~ 208 (300)
T COG2813 135 PGVFSRD--KLDKGS----RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE 208 (300)
T ss_pred CCCCcCC--CcChHH----HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence 3788754 344333 3455666666666999999999999999999999999999999999999999999999886
Q ss_pred CeEEEEccccCCccCCCccEEEEccccccccc-H----HHHHHHHHhccccCeeEEEEee
Q 022864 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKN-Y----QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 114 ~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~-~----~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..+...|..+-.. ++||+|+||.+||.-.+ . .+++....++|++||.|.+..-
T Consensus 209 ~~~v~~s~~~~~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 209 NTEVWASNLYEPVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEEeccccccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 65666677666443 49999999999986533 2 3799999999999999988654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=123.96 Aligned_cols=113 Identities=25% Similarity=0.359 Sum_probs=97.5
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CCcc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~---~~~D 132 (291)
.........+|||+|||+|..+..++++.+.+++++||+++++.+.|+++.+.+++ ++++++++|+.++... .+||
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 34455568899999999999999999997779999999999999999999999888 5899999999997654 5699
Q ss_pred EEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 133 RIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~i~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+||.++... .+++.+++...++|||||.+.+..+.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 99999987544 12678999999999999999887654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=118.35 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=92.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-cc-CCCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM-EASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~~ 131 (291)
.++..+...++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++++..++++++++.+|+.+. .. ...+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 456666777889999999999999999988777889999999999999999999888887899999998652 11 1346
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|.++... ..+...+++.+.+.|+|||.+++..+..
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 7776532 2356789999999999999999987643
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=111.70 Aligned_cols=104 Identities=23% Similarity=0.370 Sum_probs=88.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-~~~D~i~~~~~ 139 (291)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.++...+. ++++++++|+.+.. .. ++||+|+++.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999986 58999999999999999999999887 58999999999875 33 89999999998
Q ss_pred cccc--------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... .....+++.+.+.|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8753 1346789999999999999998765
|
... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=124.42 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++++...++ +++.++.+|+.+....++||+|+++.+.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 345799999999999999999988889999999999999999999998887 4799999998664333689999998654
Q ss_pred ccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 141 EHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
... .....+++.+.+.|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 1135678999999999999988654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=121.88 Aligned_cols=115 Identities=25% Similarity=0.357 Sum_probs=97.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~ 129 (291)
+..+...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. ++++...|+.+.+ ..+
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCC
Confidence 444444444567889999999999999998875 67999999999999999988876665 6888888888764 237
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+||+|++..+++++.+...+++.+.+.|+|||.+++..+.
T Consensus 114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 8999999999999999999999999999999999987654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=120.70 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.+...+......++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...+. ++.++.+|+.+.....+
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCC
Confidence 34455555566778899999999999999998752 34999999999999999999988777 68899999877533478
Q ss_pred ccEEEEcccccccc---------------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 131 YDRIYSIEMFEHMK---------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~i~~~~~l~~~~---------------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
||+|+++.++.... ....+++.+.++|||||++++...
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999987654321 145688899999999999987544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=117.29 Aligned_cols=110 Identities=15% Similarity=0.329 Sum_probs=92.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~ 131 (291)
+.++...++.+|||+|||+|.++..++... ++.+|+++|+++.+++.++++++..++ +++.++.+|+.+... ...|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 466788899999999999999999988764 457999999999999999999998884 689999999977432 2689
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|++... ..++..+++.+.+.|||||++++...
T Consensus 113 D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99998652 35678899999999999999987554
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=119.68 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccc
Q 022864 46 DAEKAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI 122 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~ 122 (291)
+........+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.++++....+. +++.+..+|+
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 334445555666555 457889999999999999999876 67999999999999999999887765 4799999999
Q ss_pred cCCccCCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEE
Q 022864 123 STFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 123 ~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...+ .+||+|++..+++|++ +...+++++.+.+++++++.+
T Consensus 114 ~~~~--~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 114 LSLC--GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hhCC--CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 8875 7899999999998874 467789999998887766544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-15 Score=114.21 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHcC---CCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEE
Q 022864 45 EDAEKAMLELYCERSR---LEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIV 119 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~ 119 (291)
++++.++++.+.+... +.... +|||+|||.|.+...|++..=....+|||.|+.+++.|+..++..+.++ |+|.+
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 4456677777776654 33333 9999999999999999987323459999999999999999999999865 99999
Q ss_pred ccccCCccC-CCccEEEEcccccccc--------cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 120 ADISTFEME-ASYDRIYSIEMFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.|+.+.... ++||+|.--+.+..+. .+...+..+.+.|+|||+++|.+++..
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 999996544 8899998877766551 234578889999999999999887654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=127.36 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=98.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c-CCC
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~ 130 (291)
.+++.+....+..+||||||+|.++..+|..+|...++|+|+++.+++.+.+++...+++|+.++++|+..+. . +++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 4555555566779999999999999999999999999999999999999999999999989999999997642 2 378
Q ss_pred ccEEEEcccccccccH------HHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNY------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|.|+++.+..|.... ..+++.+.++|+|||.+.+.+-..
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9999998776654322 579999999999999999977543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=123.30 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
..+|||+|||+|.++..++...|+.+|+++|+|+.+++.+++++...++. ++.++.+|+.+.....+||+|+++.+...
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 36999999999999999999888889999999999999999999988884 59999999887432248999999854321
Q ss_pred c-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 143 M-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 143 ~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. ..+..+++.+.+.|+|||++++...
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1 1356788999999999999988654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-14 Score=120.51 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
.++..+++.+. ..+.+|||+|||+|.++..+++..|..+++|+|+++.+++.+++++...+++++.++.+|+.+....+
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCC
Confidence 34445555443 34569999999999999999998888899999999999999999999888877999999997743347
Q ss_pred CccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+||+|+++.++.... ....+++.+.++|+|||.+++..
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 899999987654311 12467899999999999998854
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=122.29 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=97.1
Q ss_pred HhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHH
Q 022864 24 LVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 103 (291)
Q Consensus 24 ~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a 103 (291)
.-+|+.+.+++|..++. .+.-..++.+. .++.+|||+|||+|.+++..++.. ..+|+|+|++|..++.+
T Consensus 133 i~lDPGlAFGTG~HpTT---------~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa 201 (300)
T COG2264 133 IELDPGLAFGTGTHPTT---------SLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAA 201 (300)
T ss_pred EEEccccccCCCCChhH---------HHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHH
Confidence 45678888877776643 22333333332 378999999999999999999773 45799999999999999
Q ss_pred HHHHHHhCCCC-eEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 104 EEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 104 ~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++|++.++++. +.....+....+..++||+|++|-.- .-...+...+.+.|||||+++++-+
T Consensus 202 ~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA---~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 202 RENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA---EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred HHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH---HHHHHHHHHHHHHcCCCceEEEEee
Confidence 99999998843 33333344443333699999998532 2346788999999999999999765
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=123.44 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=87.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|+++++..++ +++.++++|+.+....++||+|+++.+...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 3699999999999999999988889999999999999999999998887 469999999876433368999999865421
Q ss_pred c-------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 143 M-------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. .....+++.+.+.|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 123578899999999999999854
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-14 Score=118.78 Aligned_cols=105 Identities=27% Similarity=0.419 Sum_probs=92.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+..++.+...|+.+.+.. ++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999998876 568999999999999999988877664688999998876543 689999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++.++..+++.+.+.|+|||.+++..++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999999999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-14 Score=113.82 Aligned_cols=111 Identities=22% Similarity=0.207 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-ccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~ 128 (291)
.+...+++.+..+++.+|||||||+|..+..|++. ..+|+.+|..++..+.|+++.+..|+.||.++++|...- +..
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 45677888889999999999999999999999988 449999999999999999999999998899999999884 433
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+||.|+.......++.. +.+.||+||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 899999999988777633 6778999999988654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=126.80 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 127 (291)
..++.++..+ .++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.++++++..+. ++.++++|+.+...
T Consensus 240 ~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 240 HLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPS 316 (423)
T ss_pred HHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccccc
Confidence 3444444443 345699999999999999999888889999999999999999999988876 89999999976432
Q ss_pred CCCccEEEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 EASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++||+|+|+.+...- ..+..+++.+.+.|+|||.+++..
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2679999998865211 013567788889999999988754
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-14 Score=121.89 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++..+++. ++.+...+.... ..++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH
Confidence 467899999999999998888653 469999999999999999999988874 466666664332 23789999998654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. ....++..+.+.|||||.++++.+.
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 3 3467899999999999999997653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-14 Score=119.08 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 129 (291)
+.+.+...+..-.|++|||||||.|.++..++... ...|+|+|+++..........+-.|.+ .+.....-+++++..+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 45566666655678999999999999999999874 457999999998876654433334432 2344435667766568
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.||+|+|.++++|..++-..+..+++.|+|||.+++.+...+.
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 8999999999999999999999999999999999998876554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=114.71 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=88.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---------------CCeEE
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---------------QNVEI 117 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------------~~v~~ 117 (291)
...+..+...++.+|||+|||.|..+.+|+++ |.+|+|||+|+..++.+.+ +.++ .+|++
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEE
Confidence 33443344456789999999999999999987 8999999999999887642 2211 36899
Q ss_pred EEccccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 118 IVADISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 118 ~~~d~~~~~~~--~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++|+.++... ..||+|+-..++++++ ....+++.+.++|+|||++++.+..
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 99999998644 6899999999998884 4567999999999999976654443
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-14 Score=116.14 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
....+++.+...++.+|||+|||+|..+..+++. ..+|+++|+++++++.++++++..+++++.++.+|..+.... +
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 3445566677788999999999999999988876 358999999999999999999988887899999998664333 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998876544 3457889999999988765
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-14 Score=123.87 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=97.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
..++.....+++.+|||+|||+|.++..++.. +.+++|+|+++.++..++++++..+++++.+..+|+.+++.. ++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 34445556788999999999999999887765 789999999999999999999998887789999999998765 789
Q ss_pred cEEEEccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|+++.++... ..+..+++.+.+.|||||++++..+..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999998765321 125789999999999999999877654
|
This family is found exclusively in the Archaea. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-14 Score=116.03 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=85.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccCCCcc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D 132 (291)
+.+++.++.+|||+|||+|..+..+++..+..+|+++|+++.|++.+.++++.. +++.++.+|+... ...++||
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCC
Confidence 357888999999999999999999998875568999999999999887776653 4789999998752 1236799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+|++.... ......+++++.++|||||.+++..+
T Consensus 144 ~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 144 VIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred EEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99965321 11223468999999999999999644
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-14 Score=121.15 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCccCCCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++++..+ ..++.|..+|+.++ .++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 5789999999999999999976 7899999999999999999887642 23678989998765 3789999999
Q ss_pred cccccccc--HHHHHHHHHhccccCeeEE
Q 022864 138 EMFEHMKN--YQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 138 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~ 164 (291)
.+++|+++ ...+++.+.+ +.+||.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99988854 3456666665 45665544
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=131.48 Aligned_cols=114 Identities=21% Similarity=0.341 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccC-
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~- 128 (291)
...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++.. ...+++.++++|+.. ++.+
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccCCCC
Confidence 345556666667789999999999999999987 569999999999998765432 123579999999964 3344
Q ss_pred CCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeec
Q 022864 129 ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++||+|++..+++|+++ ...+++++.++|||||++++.+..
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78999999999999965 578999999999999999987654
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-14 Score=120.27 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 137 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~ 137 (291)
.+..+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|.++. +++.+..+|+.+++++ ++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence 45678999999999999999877642 47999999999998886542 3688999999988766 789999986
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.. ...++++.++|||||++++.+++..
T Consensus 159 ~~-------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 159 YA-------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred cC-------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 54 2246788999999999999877653
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-14 Score=118.57 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=91.3
Q ss_pred HHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHH
Q 022864 20 SFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ 99 (291)
Q Consensus 20 ~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~ 99 (291)
+.....+++.+.++++..+.. ...+..+... ..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt--------~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~ 154 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTT--------RLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQA 154 (250)
T ss_pred CeEEEEECCCCccCCCCCHHH--------HHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHH
Confidence 333456677777766654421 2222233222 3568899999999999999877653 3469999999999
Q ss_pred HHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 100 KEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 100 ~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++.+++++..+++ .++.+..+| .+||+|+++... .....+++.+.++|||||.++++.+.
T Consensus 155 l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 155 VEAARENAELNGVELNVYLPQGD-------LKADVIVANILA---NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 9999999988876 334443332 279999997543 23467889999999999999997653
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=121.93 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=93.5
Q ss_pred HHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHH
Q 022864 23 KLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102 (291)
Q Consensus 23 ~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~ 102 (291)
...+++.|.+++|..+. .++.-.+++.+ ..++.+|||+|||+|.+++..++.. ..+|+|+|+++.+++.
T Consensus 131 ~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~ 199 (295)
T PF06325_consen 131 VIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEA 199 (295)
T ss_dssp EEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHH
T ss_pred EEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHH
Confidence 34678888888776652 23333444444 3567899999999999999998763 4589999999999999
Q ss_pred HHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 103 IEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 103 a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++|+..+++. ++.+ ....+.. .++||+|++|-... -+..++..+.++|+|||.++++-+-.
T Consensus 200 a~~N~~~N~~~~~~~v--~~~~~~~-~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 200 ARENAELNGVEDRIEV--SLSEDLV-EGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HHHHHHHTT-TTCEEE--SCTSCTC-CS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred HHHHHHHcCCCeeEEE--EEecccc-cccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH
Confidence 99999999984 3433 2222222 28999999986553 34668888999999999999977643
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=112.34 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCccCCCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~D~i~~~~ 138 (291)
..++.+|||+|||+|.++..+++. +.+++++|+|+++++.+++++...+..+ +.++.+|+.+.....+||+|+++.
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 367789999999999999999987 7899999999999999999998877743 889999987744336899999987
Q ss_pred ccccc---------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHM---------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++... .....+++++.++|||||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 66431 1245689999999999999887654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=116.65 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~ 135 (291)
..++.+|||+|||+|.++..+++. .++.+|+|+|+|+++++.++++.... ++.+...+...++.. ++||+|+
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEE
Confidence 356789999999999999888753 34569999999999999998765433 456666666555444 7899999
Q ss_pred Eccccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++.+++|+++ ...+++++.++++ |.+++.+...
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 9999999976 4579999999998 5666655543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=117.39 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.++.++......++.+|||+|||+|.++..++...|..+|+++|+|+.+++.+++++......++.++.+|+.+....++
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~ 175 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGR 175 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCc
Confidence 34444444455677899999999999999999988889999999999999999999872233579999999876433378
Q ss_pred ccEEEEccccccc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
||+|+++.++... ..+..+++.+.+.|+|||++++..
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999998654321 124568888889999999998843
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=116.08 Aligned_cols=116 Identities=10% Similarity=0.109 Sum_probs=88.8
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
.+++.++..+. ..++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++++.++ ++++++|+.+...
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~ 148 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT 148 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch
Confidence 34444444333 233468999999999999999988878899999999999999999988765 4788999876432
Q ss_pred --CCCccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 128 --EASYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 --~~~~D~i~~~~~l~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++||+|+++.++.... -+..+++.+.++|||||++++...
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 25799999998753210 135788888899999999998653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=113.68 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
-.+...+++.+.++++.+|||||||+|..+..++... +...|+++|.++...+.|++++...+..++.++.+|...-..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 3456778888889999999999999999999999874 345799999999999999999999999899999999877443
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. .+||.|++......++ ..+.+.|++||++++..-
T Consensus 138 ~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 4 8999999998886553 236777999999988554
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=113.70 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=82.8
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 126 (291)
+.++.++.. .+++.+|||||||+|.++..+++.. +..+|+|||+++. ...+++.++++|+.+..
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLK 107 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHH
Confidence 444555555 4678899999999999999999885 3469999999881 12347899999999853
Q ss_pred -----c-CCCccEEEEccccccccc-----------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 -----M-EASYDRIYSIEMFEHMKN-----------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 -----~-~~~~D~i~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. .++||+|+|+.+.++..+ ...+++.+.++|||||.+++..+..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 2 278999999876554322 2468999999999999999977644
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=116.27 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=86.2
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccc-
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK- 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~- 144 (291)
+|||+|||+|..++.++...|.++|+|+|+|+..++.|++|+..+++.++.++.+|+.+-.. ++||+|+||.+.-.-+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC-CceeEEEeCCCCCCCcc
Confidence 89999999999999999998888999999999999999999999997677777778776433 5999999998653221
Q ss_pred ------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 145 ------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ------------------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-...++..+.+.|+|||.+++..-
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 146788889999999999888653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=125.82 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|++++...++ +++.++.+|+.+....++||+|+|+.++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 35689999999999999999888889999999999999999999988887 47999999987643336899999987543
Q ss_pred cc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 142 HM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. ..+..+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 21 113557888899999999998854
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-13 Score=116.61 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-ccCCC-----ccE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-EMEAS-----YDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~-----~D~ 133 (291)
.++.+|||+|||+|..+..|++..+ +.+|+++|+|++|++.+.++...... -++.++++|+.+. ..... ..+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4668999999999999999998865 58999999999999999988765432 2577889999873 33322 234
Q ss_pred EEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++..++.+++ +...+++++++.|+|||.+++..-..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44455677763 46679999999999999999865444
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=116.50 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.++..+++.+..+++.+|||+|||+|.++..+++..+ ...|+++|+++++++.|+++++..+.+++.++.+|..+....
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 3455666777788889999999999999999998763 247999999999999999999988888899999998775444
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+||+|++......+ ...+.+.|+|||.+++..
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 689999998655433 334678899999988854
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-13 Score=121.69 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=93.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCC
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 130 (291)
.++..++..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++++..|+ ++.++++|+.+... .++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCC
Confidence 34445667789999999999999999999887567999999999999999999999887 57899999987532 267
Q ss_pred ccEEEEcccccc------------c----------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEH------------M----------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~------------~----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||.|+++.+... . ....++++.+.+.|||||.+++++++.
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999997664321 1 113468999999999999999887643
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=110.63 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=101.3
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022864 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~ 92 (291)
..||.....|+.|-+...+-...+|. + .+ .+..++ +......+|||+|||+|.++..++.+.++.+|++
T Consensus 25 ~~~~~~~~v~~~~~g~~~~~~G~FfT-P-~~-------i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~g 93 (279)
T PHA03411 25 LTYEEKEFCYNNYHGDGLGGSGAFFT-P-EG-------LAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVC 93 (279)
T ss_pred cccCcHHHHHHhcccccccCceeEcC-C-HH-------HHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEE
Confidence 45666667777777776554434443 2 11 121221 1223456999999999999999888765689999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccccc--------------------HHHHHHH
Q 022864 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--------------------YQNLLKK 152 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~--------------------~~~~l~~ 152 (291)
+|+|+.+++.++++. +++.++++|+.++....+||+|+++.++.+.+. ..+++..
T Consensus 94 VDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~ 168 (279)
T PHA03411 94 VELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD 168 (279)
T ss_pred EECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhh
Confidence 999999999887753 368899999998765578999999999987521 2456777
Q ss_pred HHhccccCeeEEEEee
Q 022864 153 ISKWMKEDTLLFVHHF 168 (291)
Q Consensus 153 ~~~~LkpgG~l~~~~~ 168 (291)
...+|+|+|.+.+...
T Consensus 169 v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 169 VGYFIVPTGSAGFAYS 184 (279)
T ss_pred hHheecCCceEEEEEe
Confidence 7889999998777633
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=108.50 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=102.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 129 (291)
...++..+++.++.+|+|.|.|+|.++.+|+.. .|..+|+.+|+.++..+.|++|++..++. ++++..+|+.+...+.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 456778889999999999999999999999964 46689999999999999999999999885 4999999999976667
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.||+|+. .++++..+++++.+.|||||.+++-.|+.+
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 9999988 568999999999999999999999877654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-14 Score=115.79 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=104.6
Q ss_pred HHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEE
Q 022864 11 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKI 90 (291)
Q Consensus 11 ~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v 90 (291)
++.-+|.-.+-|..-+-+...|+- -.++.+++.+++..+-.++||+|||||..+..+... ..++
T Consensus 87 Ve~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~l 150 (287)
T COG4976 87 VETLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRL 150 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--Hhhc
Confidence 445556656666665555565531 345677777777777899999999999999999877 5689
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 91 TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|||+|.+|++.|.++ |+ --...++|+..+. .+++||+|++..++.++.++..++..+...|+|||.+.|++
T Consensus 151 tGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 151 TGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred cCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 9999999999887653 32 1123445554432 23789999999999999999999999999999999999876
Q ss_pred e
Q 022864 168 F 168 (291)
Q Consensus 168 ~ 168 (291)
-
T Consensus 226 E 226 (287)
T COG4976 226 E 226 (287)
T ss_pred c
Confidence 4
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-13 Score=121.38 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=93.0
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCcc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D 132 (291)
...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..|++++.++++|+.+... +++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 243 APALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 344566788999999999999999999875 567999999999999999999999998779999999987642 26899
Q ss_pred EEEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeec
Q 022864 133 RIYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~i~~~~~l~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+++.+.... + ....+++.+.++|||||.++.++..
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99987653211 0 1245899999999999999887654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-13 Score=112.90 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=92.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~ 135 (291)
.+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++..++.++.++..|...+... +.||+|+
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 45667899999999999999999988753 358999999999999999999999987899999998876433 6799999
Q ss_pred Eccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..+.... ....++++.+.+.|||||+++.++.+.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 86543211 123458999999999999998877654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-13 Score=120.45 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=94.3
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~ 133 (291)
..++..++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.++++++..|++++.++.+|+..++ ..++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 34567789999999999999999999875 45799999999999999999999999877999999998765 2378999
Q ss_pred EEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|++..+.... + ...+++.++.+.|||||.++.++++.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9986544221 1 23567999999999999999988764
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=120.28 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=93.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
..+...++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.++++++..|++++.++.+|+.++....+||+|+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence 34566788999999999999999988764 24699999999999999999999999878999999998876457899999
Q ss_pred Ecccccc-------------c---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEH-------------M---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~-------------~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..+... . .....++..+.+.|||||++++++++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 7532210 0 113468999999999999999988755
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=95.89 Aligned_cols=100 Identities=27% Similarity=0.453 Sum_probs=85.7
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEcccccc-
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEMFEH- 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~~~~l~~- 142 (291)
+|+|+|||.|..+..+++ .+..+++++|+++.+++.+++........++.++..|+.+... ..++|+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999987 4578999999999999988864444444579999999998764 378999999999988
Q ss_pred cccHHHHHHHHHhccccCeeEEEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=119.60 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=94.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-C
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-E 128 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~ 128 (291)
+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..|++++.++.+|+.+.. . .
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 3445667789999999999999999999874 34699999999999999999999999888999999998765 2 2
Q ss_pred CCccEEEEccc------cccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEM------FEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||.|++..+ +.+-++ ..++++++.+.|||||+++.++++.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999998643 222121 4678999999999999999877654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.8e-13 Score=112.55 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~D~i~~~~ 138 (291)
.++.+|||||||+|.++..+++..|+.+++++|+++++++.+++++...+. ++++++.+|+.+... +++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456799999999999999999988899999999999999999998765543 589999999876532 26899999863
Q ss_pred ccc-ccc---cHHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFE-HMK---NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.-. ..+ ....+++.+.+.|+|||++++..+.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 111 111 2368999999999999999986543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=108.52 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=90.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
..+.......+..+|||||+|.|.++..+++++|+.+++.+|+ |..++.+++ .++++++.+|+.+ +.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc-cc
Confidence 4455666777788999999999999999999999999999999 888877776 3589999999994 4446 99
Q ss_pred EEEEcccccccc--cHHHHHHHHHhccccC--eeEEEEeeccC
Q 022864 133 RIYSIEMFEHMK--NYQNLLKKISKWMKED--TLLFVHHFCHK 171 (291)
Q Consensus 133 ~i~~~~~l~~~~--~~~~~l~~~~~~Lkpg--G~l~~~~~~~~ 171 (291)
+|++..++|..+ +...+|+++++.|+|| |+|+|.++..+
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 999999999984 4567999999999999 99999877543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=119.42 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-
Q 022864 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE- 126 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 126 (291)
...+++.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++++++++.+|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 3456677777777778899999999999999999987 5799999999999999999999888888999999997632
Q ss_pred ---c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 127 ---M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 127 ---~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
. ..+||+|+++.+.... ...++.+.+ ++|+++++++. ++.+.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~---~~~~~~l~~-~~~~~ivyvSC-np~tl 405 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA---AEVMQALAK-LGPKRIVYVSC-NPATL 405 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh---HHHHHHHHh-cCCCeEEEEEe-ChHHh
Confidence 2 2579999998877543 355665555 68999888865 34333
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-12 Score=104.25 Aligned_cols=119 Identities=13% Similarity=0.215 Sum_probs=89.7
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
...+.+++.+. ..++.+|||+|||+|.++..++.+. ..+|+++|.++..++.++++++..+++++.++.+|+.+...
T Consensus 39 ~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~ 117 (199)
T PRK10909 39 RVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ 117 (199)
T ss_pred HHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh
Confidence 33334444332 2457899999999999999765554 57999999999999999999999888789999999977432
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022864 128 -EASYDRIYSIEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 170 (291)
..+||+|+++.++.. .-...+++.+.. +|+|+++++++....
T Consensus 118 ~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 118 PGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred cCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 257999999999632 224456666655 489999999876543
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=104.14 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=86.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
+.+++.+...++.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.+++.+ ..|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 45666777788899999999999999999987 67999999999999999888754 34799999999998766 469
Q ss_pred cEEEEcccccccccHHHHHHHHHhc--cccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKW--MKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~~~~~ 168 (291)
|.|+++.+++.. ..++.++.+. +.++|.++++.-
T Consensus 79 d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEEHH
Confidence 999999887532 3444444433 447888877643
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=117.30 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=92.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---E 128 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~ 128 (291)
..++..++..++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..|++ ++.+..+|...... .
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3445556778899999999999999999998876679999999999999999999998884 23346677665432 3
Q ss_pred CCccEEEEcc------ccccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIE------MFEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||.|++.. ++...++ ..+++..+.+.|||||.++.++++.
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6799999754 3322222 3679999999999999999988765
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=106.02 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=79.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cC-C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-ME-A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~-~ 129 (291)
+.+.+.+ +++.+|||+|||+|.++..+++.. +..++|+|+|+++++.+++ . ++.++.+|+.+ .+ .+ +
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccccCCC
Confidence 3444443 367799999999999999888654 6789999999998877653 1 46788888876 32 33 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|+++.+++|+++...+++++.+.++ .+++..+
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence 89999999999999999999999887655 4445443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=104.63 Aligned_cols=116 Identities=21% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-h-----------CCCCeEEEE
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-L-----------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-----------~~~~v~~~~ 119 (291)
+..+++.+...++.+||..|||.|....+|+++ |.+|+|+|+|+..++.+.+.... . ...+|++.+
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 444555566778889999999999999999987 89999999999998887432211 0 113579999
Q ss_pred ccccCCccC--CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 120 ADISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+..+... ++||+|+=...+..+ ....+..+.+.++|+|||.+++.+..
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 999998765 689999999999888 45678999999999999996555543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=108.89 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=81.7
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 131 (291)
+.+.+.++.+|||+|||+|.++..++... +...|++||+++.+.+.+.+.++.. +|+.++..|+.... ....+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 34567899999999999999999999885 3468999999998776666555433 47899999986521 12679
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|++... ...+...++.++.++|||||.+++.
T Consensus 204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99999864 2333445667899999999999994
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=101.84 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=90.0
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------------HhCCCCeEEEEccc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------------VLELQNVEIIVADI 122 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~~v~~~~~d~ 122 (291)
+..+...++.+||+.|||.|..+.+|+++ |.+|+|+|+|+..++.+.+... ..+ .++++.++|+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~ 112 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADI 112 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccC
Confidence 34445556789999999999999999988 8899999999999888755210 012 3789999999
Q ss_pred cCCccC----CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 123 STFEME----ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 123 ~~~~~~----~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++... ++||+|+-..++.+++ ...+..+.+.++|+|||.+++.+..
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 998641 6899999999999994 3567999999999999998887664
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=103.52 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCC--CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc
Q 022864 43 TLEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 120 (291)
.+...|..+....++.+..++ ..-|||||||+|..+..|... +...+|+|+|+.|++.|.+.--+ -+++.+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil~ 100 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLILC 100 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeeee
Confidence 444555667777777776665 779999999999999988865 78999999999999999873221 246788
Q ss_pred cccC-CccC-CCccEEEEcccccccc-------c----HHHHHHHHHhccccCeeEEEEeec
Q 022864 121 DIST-FEME-ASYDRIYSIEMFEHMK-------N----YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 121 d~~~-~~~~-~~~D~i~~~~~l~~~~-------~----~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+-+ +++. +.||.+++..+++++- + +..++..+..+|++|+..+++...
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 8875 4555 8999999999887761 1 345788999999999999997653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=114.22 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~~D~i~ 135 (291)
++.+|||+|||+|.++..++.. ...+|++||+|+.+++.++++++.++++ +++++++|+.+... .++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999999877643 2459999999999999999999999884 79999999988531 25899999
Q ss_pred Eccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++.+...- .++..++..+.++|+|||.++..+.++
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99875322 235667778899999999999877543
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-12 Score=110.65 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
..++..+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++++++++++|+.++..
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh
Confidence 344444444444345689999999999999999985 68999999999999999999999998789999999987643
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++||+|+++.+-..+. ..+++.+ ..++|+++++++.
T Consensus 237 ~~~~~D~Vv~dPPr~G~~--~~~~~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 237 QGEVPDLVLVNPPRRGIG--KELCDYL-SQMAPRFILYSSC 274 (315)
T ss_pred cCCCCeEEEECCCCCCcc--HHHHHHH-HHcCCCeEEEEEC
Confidence 25799999998753321 2333333 3367877766643
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=109.39 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCcc--CCCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEM--EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~--~~~~D~ 133 (291)
.+.+.+||+||||.|..+..+++..+..+|++||+++.+++.+++.+...+ .++++++.+|...+.. .++||+
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 345789999999999999999875445699999999999999999876431 2479999999987543 278999
Q ss_pred EEEccccccccc----HHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHMKN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|++...-...+. ...+++.+++.|+|||++++...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999753322211 36788999999999999987543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.3e-12 Score=105.83 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 126 (291)
.+.+..+++ ..++.+|||+|||+|..+..++...+ +.+|+++|+++++++.|+++++..++ ++++++.+|+.+..
T Consensus 57 g~~L~~l~~---~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVK---IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHH---HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 344444443 34577999999999999998887653 57999999999999999999999998 47999999998742
Q ss_pred c-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~-------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. .++||+|++...- +.+..+++.+.+.|+|||.+++...
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 1 2589999986432 4567789999999999999887543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-12 Score=102.17 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cC-C
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------ME-A 129 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~-~ 129 (291)
...++.+|||+|||+|.++..++.+. +..+|+++|+|+.+ ..+++.++++|+.+.. .+ .
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 44788999999999999999998875 45689999999864 1236888889987642 22 6
Q ss_pred CccEEEEccccc--------cc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFE--------HM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+||+|+++.+.+ +. .....++..+.++|+|||++++..+.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 799999965421 11 12367899999999999999986543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=101.81 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=85.6
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCccEEEEcccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~i~~~~~l 140 (291)
..+||||||.|.+...+|..+|+..++|+|++...+..+.+++...+++|+.++++|+..+. .++++|.|+.+.+=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999999999999999999999999999999998832 23789999998877
Q ss_pred ccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 141 EHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.|.+. ...+++.+.++|+|||.+.+.+-
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 66532 36799999999999999988764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=103.58 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
..+..++..+++.||.+|||.|.|+|.++..|+.. .|..+|+.+|..++..+.|+++++..|+ +++++.+.|+....+
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 44667888899999999999999999999999975 4778999999999999999999999999 479999999975322
Q ss_pred ----CCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeeccC
Q 022864 128 ----EASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~ 171 (291)
+..+|.|+. .++++..++..+.+.| +|||++++-.|+.+
T Consensus 107 ~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred cccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 267999888 4577888999999999 89999999877653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=110.21 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
....++..+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.++++++.+++++++++.+|+.+..
T Consensus 217 ~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~ 294 (374)
T TIGR02085 217 VAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA 294 (374)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence 33444455545444345679999999999999999965 6799999999999999999999998888999999998754
Q ss_pred cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. .+||+|+++.+-..+ ...+++.+. .++|++.++++.
T Consensus 295 ~~~~~~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 295 TAQMSAPELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred HhcCCCCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 22 569999999986533 245556665 478999888864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-12 Score=121.29 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc--CCCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~--~~~~D~i~~~~ 138 (291)
++.+|||+|||+|.++..++... ..+|++||+|+.+++.+++|+..++++ +++++++|+.++.. ..+||+|+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999999752 347999999999999999999999884 79999999877532 36899999987
Q ss_pred ccc-----------ccccHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFE-----------HMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+.. ...++..++..+.++|+|||.+++++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 542 124567789999999999999988654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=99.59 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEc
Q 022864 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~ 120 (291)
.+...+.+.+..+++.. ...+||||||++|..+.++++..| +.+|+.+|++++..+.|+++++..|+ ++|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 45666666777666543 456999999999999999998765 68999999999999999999999998 58999999
Q ss_pred cccCCcc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 121 DISTFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 121 d~~~~~~-------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+.+... .++||+|+....= .++...++.+.+.|+|||.+++...
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence 9987421 1479999998643 5678889999999999999988543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-12 Score=102.46 Aligned_cols=106 Identities=24% Similarity=0.327 Sum_probs=85.8
Q ss_pred EEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-CCCccEEEEcc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~D~i~~~~ 138 (291)
+||++|||.|....-+.+..|+ ..|+++|.||.+++..+++..... +++.....|+.... . ++++|+|+++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEE
Confidence 8999999999999999887665 899999999999888877654332 35655566665532 2 28899999999
Q ss_pred ccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 139 MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 139 ~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+|..+ .....+++++.++|||||.+++.+.+.-.
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 99988 45788999999999999999998887644
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=97.49 Aligned_cols=117 Identities=22% Similarity=0.299 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~- 128 (291)
+++.+.+.+. ..+.+|||||||+|..+.++++.+|..+..-.|.++..+..........+++|+ .-+..|+.+...+
T Consensus 14 Il~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 14 ILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 3444433333 233369999999999999999999999999999999998888888887777553 3445666654221
Q ss_pred --------CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 --------ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 --------~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++||+|+|.+++|.+ .....+|+.+.+.|+|||.|++.-|
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 489999999999877 4567899999999999999998655
|
The function of this family is unknown. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=100.27 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++. .++.++.+|+.......+||+|++|.+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence 36799999999999999998763 2569999999999999998764 358899999987655578999999998
Q ss_pred ccccc--c----------HHHHHHHHHhccccCee
Q 022864 140 FEHMK--N----------YQNLLKKISKWMKEDTL 162 (291)
Q Consensus 140 l~~~~--~----------~~~~l~~~~~~LkpgG~ 162 (291)
+.-.. + ...+++++.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 87431 1 45588888886666665
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-11 Score=102.16 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--CCCccEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~~D~i 134 (291)
.+.+.+||+||||+|..+..+++..+..+++++|+++++++.+++.+...+ .++++++.+|...... .++||+|
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345569999999999999998876545789999999999999998875432 1468888888766422 2789999
Q ss_pred EEccccccc--cc--HHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHM--KN--YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~--~~--~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++....... .. ..++++.+.+.|+|||++++..
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 997653222 22 4678999999999999999864
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=107.09 Aligned_cols=108 Identities=18% Similarity=0.122 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCcc---CCCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEM---EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~---~~~~D~ 133 (291)
.+++.+||+||||.|..++.+++..+..+|+.||+++.+++.+++.+... ++ ++++++.+|...+.. .++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45678999999999999999986532368999999999999999987643 22 479999999866421 368999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|++...-...+ -...+++.++++|+|||+++++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 99965433222 135789999999999999987543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=96.56 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC----c-cC-CCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF----E-ME-ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~----~-~~-~~~D~ 133 (291)
...+..+||+|||+|..+..++...|.++|+++|.|+.++..|.+|+...++ +++.+++-+++.. . .. +++|+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 3456689999999999999999888999999999999999999999999888 4677775544432 1 11 88999
Q ss_pred EEEccccccccc--------------------------HHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 134 IYSIEMFEHMKN--------------------------YQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 134 i~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
++||.+.-.-.| ...++.-+.+.|+|||.+.+.....+..
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 999986522211 3456777889999999999987655443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=97.04 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=70.9
Q ss_pred EEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 91 TGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+|++|++.|+++.+..+ .++++++++|+.+++.+ ++||+|++..+++++++...+++++.++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999987765322 24799999999998876 78999999999999999999999999999999999998
Q ss_pred eeccC
Q 022864 167 HFCHK 171 (291)
Q Consensus 167 ~~~~~ 171 (291)
++..+
T Consensus 81 d~~~~ 85 (160)
T PLN02232 81 DFNKS 85 (160)
T ss_pred ECCCC
Confidence 87654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=98.03 Aligned_cols=116 Identities=17% Similarity=0.329 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEE-cccc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV-ADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~-~d~~ 123 (291)
.+-..+..+++ ..+.++|||||.+.|..+.+++...| +.+++.+|.++++.+.|++++++.|++ ++..+. +|..
T Consensus 46 e~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 33444444444 45678999999999999999999887 679999999999999999999999994 588888 5877
Q ss_pred CCcc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... .++||+|+....= .+++.+++.+.+.|+|||.+++...
T Consensus 123 ~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 6433 2899999987443 5678899999999999999988654
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-11 Score=107.89 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
....++..+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++++++++.+|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 33455666666666677889999999999999999987 5699999999999999999999998888999999997632
Q ss_pred ----c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 ----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ----~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
. ..+||+|+++.+-..+ ...+++.+.+ ++|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 1 1469999998775322 2556666554 8899887774
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-11 Score=118.07 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----------------CCeEEEEccccCCcc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----------------QNVEIIVADISTFEM 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~ 127 (291)
+.+|||+|||+|..++.+++++|..+|+|+|+|+.+++.|++|+..+++ +++.++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4699999999999999999998778999999999999999999987542 369999999987543
Q ss_pred C--CCccEEEEccccccc----------------------------------c----cHHHHHHHHHhccccCeeEEEEe
Q 022864 128 E--ASYDRIYSIEMFEHM----------------------------------K----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~--~~~D~i~~~~~l~~~----------------------------------~----~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. .+||+||||.+.-.- . -+.++++.+.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 369999998864210 0 02667888889999999999865
Q ss_pred ec
Q 022864 168 FC 169 (291)
Q Consensus 168 ~~ 169 (291)
-.
T Consensus 279 G~ 280 (1082)
T PLN02672 279 GG 280 (1082)
T ss_pred Cc
Confidence 43
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-11 Score=96.85 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHC---C--CCEEEEEcCCHHHHHHHHHHH---
Q 022864 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKY---S--NCKITGICNSKTQKEFIEEQC--- 107 (291)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~--~~~v~~vD~s~~~~~~a~~~~--- 107 (291)
....++......+..+++.....+..+|+..||++|. +++.+.+.. . ..+|+|+|+|+.+++.|++-.
T Consensus 8 d~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~ 87 (196)
T PF01739_consen 8 DPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPE 87 (196)
T ss_dssp TTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEG
T ss_pred CHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCH
Confidence 4455666656666555554444467899999999996 444444421 1 369999999999999987711
Q ss_pred -----------HH-----hC--------C-CCeEEEEccccC-CccCCCccEEEEcccccccc--cHHHHHHHHHhcccc
Q 022864 108 -----------RV-----LE--------L-QNVEIIVADIST-FEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKE 159 (291)
Q Consensus 108 -----------~~-----~~--------~-~~v~~~~~d~~~-~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~Lkp 159 (291)
++ .+ + ++|.|...|+.+ .+..+.||+|+|.+++.++. ...++++.+.+.|+|
T Consensus 88 ~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 88 RSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp GGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred HHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 00 01 1 468999999999 33338999999999999994 457899999999999
Q ss_pred CeeEEEE
Q 022864 160 DTLLFVH 166 (291)
Q Consensus 160 gG~l~~~ 166 (291)
||+|++.
T Consensus 168 gG~L~lG 174 (196)
T PF01739_consen 168 GGYLFLG 174 (196)
T ss_dssp EEEEEE-
T ss_pred CCEEEEe
Confidence 9999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=99.74 Aligned_cols=117 Identities=12% Similarity=0.152 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEcccc
Q 022864 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIS 123 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~ 123 (291)
..+.+.+..+++ ..+..+|||||+++|..+.+++...| +.+|+++|.+++..+.|++++++.|+. +++++.+|+.
T Consensus 104 ~~~g~lL~~L~~---~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 104 PDQAQLLAMLVQ---ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHHHHH---hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 333444444443 34578999999999999999997653 568999999999999999999999994 8999999997
Q ss_pred CCcc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~-------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... .++||+|+....= .++..+++.+.+.|+|||.+++...
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 7421 2579999997653 5678899999999999999888543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-11 Score=105.89 Aligned_cols=109 Identities=21% Similarity=0.177 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC---CCeEEEEccccCC------c
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL---QNVEIIVADISTF------E 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~---~~v~~~~~d~~~~------~ 126 (291)
++.+|||||||-|+...-.... .-..++|+|++...++.|+++.+.. .. -...++.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7899999999988876666544 2568999999999999999988321 11 1356788887653 2
Q ss_pred cC-CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 127 ME-ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.. .+||+|-|..++|+. .....+++++...|+|||+++..++....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 22 589999999999988 34566999999999999999999887543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=92.94 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHH------cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CCeEE
Q 022864 47 AEKAMLELYCER------SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEI 117 (291)
Q Consensus 47 ~~~~~~~~~~~~------~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~ 117 (291)
+...+...+.+. ....++.+|||||||+|..++.++...+..+|+..|.++ .++.++.+++.++ . .++.+
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence 334444555542 234578899999999999999999875578999999998 9999999998876 2 47889
Q ss_pred EEccccCCc----cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 118 IVADISTFE----ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 118 ~~~d~~~~~----~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
...|+.+.. .. .+||+|++..+++.-.....+++.+.++|+|+|.+++....+
T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 888887632 12 589999999999988889999999999999999977766544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=92.23 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=70.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
..+.-.+.+|+|+|||||.++...+-.. ..+|+|||+++++++.+++|+.+.+ .++.|+.+|+.++. .++|.++.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC--CccceEEEC
Confidence 4455678899999999999999888663 5799999999999999999998843 48999999999976 679999999
Q ss_pred cccccc
Q 022864 138 EMFEHM 143 (291)
Q Consensus 138 ~~l~~~ 143 (291)
.++...
T Consensus 116 PPFG~~ 121 (198)
T COG2263 116 PPFGSQ 121 (198)
T ss_pred CCCccc
Confidence 998655
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=106.67 Aligned_cols=128 Identities=22% Similarity=0.325 Sum_probs=89.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHHH
Q 022864 37 FSDASKTLEDAEKAMLELYCERSRLE----DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCR 108 (291)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~vLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~ 108 (291)
|+.+....+..+.++...+.+..... .+..|||+|||+|.++...++.. ...+|++||.|+.++..+++.++
T Consensus 156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 33333334444455555555554433 25789999999999987766541 23699999999999888887777
Q ss_pred HhCC-CCeEEEEccccCCccCCCccEEEEcc--cccccccHHHHHHHHHhccccCeeEE
Q 022864 109 VLEL-QNVEIIVADISTFEMEASYDRIYSIE--MFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 109 ~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~--~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.++. ++|+++.+|++++..+.++|+|||-. ++-.-+-..+.+....+.|||||+++
T Consensus 236 ~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 236 ANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 7887 68999999999998889999999843 33222445678889999999999865
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=97.25 Aligned_cols=105 Identities=21% Similarity=0.231 Sum_probs=92.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~i~~~~~ 139 (291)
...+||||||.|.+...+|+++|...++|||+....+..+.+.+.+.+++|+.+++.|+..+. .+ ++.|-|..+.+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 358999999999999999999999999999999999999999999999989999999998853 22 58999999887
Q ss_pred cccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
=.|.+. ...+++.+.+.|+|||.+.+.+-
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 766632 35799999999999999999764
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=99.44 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=74.9
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~ 143 (291)
.++|+|||+|..++.+++. -.+|+|+|+|+.|++.+++.....-. ........+..++... ++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 8999999999888888887 46999999999999988765432222 1233444444554433 899999999999998
Q ss_pred ccHHHHHHHHHhccccCe-eEEE
Q 022864 144 KNYQNLLKKISKWMKEDT-LLFV 165 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG-~l~~ 165 (291)
|+.++++.+.++||++| .+.+
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEE
Confidence 78899999999999877 5444
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=103.63 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=82.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-----HHhC--CCCeEEEEccccCCccC--CCc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-----RVLE--LQNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~--~~~v~~~~~d~~~~~~~--~~~ 131 (291)
...+.+||+||||.|..++.+.+..+..+|++||+++++++.|++.. .... .++++++.+|..++... ++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45567999999999999998887644579999999999999999621 1112 25899999999985323 689
Q ss_pred cEEEEcccccc---cc--cHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEH---MK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~---~~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|++...-.. .. ....+++.+++.|+|||+++++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999843211 11 125689999999999999988743
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-11 Score=95.93 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCC------CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022864 49 KAMLELYCERSRLE------DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 122 (291)
..--..++.++... ...+.||+|+|.|..+..+.... -.+|..||+.+..++.|++........-.++.+..+
T Consensus 35 i~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 35 IQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH
Confidence 33334455554332 46799999999999998776443 569999999999999998765442222367889999
Q ss_pred cCCccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 123 STFEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 123 ~~~~~~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++.++ .+||+|++..++.|+ .++..+|++++..|+|+|++++-.-.
T Consensus 114 Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 114 QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 998776 799999999999999 46788999999999999999996543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=104.16 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=91.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC-----CCccEEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME-----ASYDRIY 135 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~-----~~~D~i~ 135 (291)
|.+|||+-|=||.++.+++.. |+ +|+.||+|...++.|++|++.+|+ +++.|+++|+.++-.. .+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 899999999999999999976 66 999999999999999999999998 3589999999986432 4899999
Q ss_pred Eccccc---------ccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 136 SIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 136 ~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+.++-. ...++..++..+.++|+|||.+++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 977432 125678899999999999999999876543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-10 Score=90.46 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc----C-CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~----~-~~~D~i~~ 136 (291)
.+.+|||++||+|.++..++.+. ...|++||.++.+++.++++++..++. ++.++.+|+.+... . ..+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999884 348999999999999999999998884 68999999966321 1 24788888
Q ss_pred cccccccccHHHHHHHHH--hccccCeeEEEEeecc
Q 022864 137 IEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 170 (291)
.+++.. .....+++.+. .+|+++|.+++.....
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 888753 34455566554 4789999988876543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-11 Score=110.07 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHH--HHHh---CC--CCeEEEEccccCCcc--CCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQ--CRVL---EL--QNVEIIVADISTFEM--EAS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~--~~~~---~~--~~v~~~~~d~~~~~~--~~~ 130 (291)
.+++.+|||||||+|..+..+++. +. .+|+++|+++++++.++++ +... .. ++++++.+|..+... +++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 356789999999999999999864 45 7999999999999999983 2221 12 479999999988532 278
Q ss_pred ccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022864 131 YDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
||+|+++......+. ..++++.+++.|||||+++++..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 999999865433221 24689999999999999998753
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=89.80 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE---------EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK---------ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVA 120 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~---------v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~ 120 (291)
+...++......++..|||.-||+|++.++.+...+... ++|+|+++++++.+++|++..++. .+.+.+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 344556666778899999999999999999887654555 899999999999999999998884 5899999
Q ss_pred cccCCccC-CCccEEEEccccccc-c-------cHHHHHHHHHhcccc
Q 022864 121 DISTFEME-ASYDRIYSIEMFEHM-K-------NYQNLLKKISKWMKE 159 (291)
Q Consensus 121 d~~~~~~~-~~~D~i~~~~~l~~~-~-------~~~~~l~~~~~~Lkp 159 (291)
|+.+++.. +.+|+|+++.++..- . -+..+++.+.++|++
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99999844 889999999988643 1 135678888899999
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-10 Score=95.70 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=104.8
Q ss_pred hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCE
Q 022864 19 TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCK 89 (291)
Q Consensus 19 ~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~-----~~~ 89 (291)
.+..+.+++.-..-...+|. .....+......+..++..... ...+|+-.||++|. ++..+.+..+ ..+
T Consensus 54 ~~e~~~~l~~ltin~T~FFR-~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~ 131 (268)
T COG1352 54 SEELQAFLDALTINVTEFFR-DPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK 131 (268)
T ss_pred HHHHHHHHHHhhhccchhcc-CcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE
Confidence 44445555542222234454 4566777777777777654333 57899999999995 5555666553 479
Q ss_pred EEEEcCCHHHHHHHHHHHHH-----h----------------C-------C-CCeEEEEccccCCc-cCCCccEEEEccc
Q 022864 90 ITGICNSKTQKEFIEEQCRV-----L----------------E-------L-QNVEIIVADISTFE-MEASYDRIYSIEM 139 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~-----~----------------~-------~-~~v~~~~~d~~~~~-~~~~~D~i~~~~~ 139 (291)
|+|+|+|...++.|+.-.=. . + + +.|.|...|+.+.. ..+.||+|+|.++
T Consensus 132 I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV 211 (268)
T COG1352 132 ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV 211 (268)
T ss_pred EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcce
Confidence 99999999999998762100 0 1 1 34788888988866 5588999999999
Q ss_pred cccc--ccHHHHHHHHHhccccCeeEEEE
Q 022864 140 FEHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 140 l~~~--~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+.++ +...++++.++..|+|||+|++.
T Consensus 212 LIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 212 LIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 9999 45677999999999999999984
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=88.33 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=93.0
Q ss_pred CHHHHHHH-HHHHHHHHcCCCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc
Q 022864 43 TLEDAEKA-MLELYCERSRLEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~-~~~~~~~~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 120 (291)
+.++...+ .++.+.-.-...... +++|+|+|.|..++.++-.+|..+++.+|.+..-+...+......+++|++++++
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~ 105 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVING 105 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 45555543 444443222223333 8999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 121 d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+++.....+||+|++..+- ....+++-+...|++||.+++.
T Consensus 106 R~E~~~~~~~fd~v~aRAv~----~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 106 RAEEPEYRESFDVVTARAVA----PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -HHHTTTTT-EEEEEEESSS----SHHHHHHHHGGGEEEEEEEEEE
T ss_pred eecccccCCCccEEEeehhc----CHHHHHHHHHHhcCCCCEEEEE
Confidence 99993334899999998554 6788899999999999998773
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-10 Score=96.41 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--C----CeEEEEccccCC------ccC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--Q----NVEIIVADISTF------EME 128 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~----~v~~~~~d~~~~------~~~ 128 (291)
.+++..++|+|||-|+.++-.-+.. -..++|+|++...++.|+++.+.-.- + .+.|+.+|.... +++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 4678899999999999877665442 45899999999999999988764321 1 368888988653 223
Q ss_pred C-CccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 A-SYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~-~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. +||+|-|..++|+. ...+.++.++.++|+|||+++-..|..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 3 49999999999876 456679999999999999999888765
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=91.22 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc-----cCCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-----MEASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~~D~i~ 135 (291)
-++.++||+.||+|.++.+.+.+. ..+|+.||.++..+..+++|++..+.. ++.++..|..... ...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 468999999999999999999884 569999999999999999999998884 5899999976532 237899999
Q ss_pred EcccccccccHHHHHHHHH--hccccCeeEEEEeeccCC
Q 022864 136 SIEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~ 172 (291)
+.+++..-.....+++.+. .+|+++|.+++.......
T Consensus 120 lDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~ 158 (183)
T PF03602_consen 120 LDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKED 158 (183)
T ss_dssp E--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS
T ss_pred ECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCC
Confidence 9998865533577888887 799999999998776533
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=96.50 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++.++++|+.+.+.+
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 456677778778888999999999999999999987 57999999999999999887754 34799999999987653
Q ss_pred CCccEEEEcccccc
Q 022864 129 ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~~~D~i~~~~~l~~ 142 (291)
.+|.|+++.+++.
T Consensus 91 -~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 -EFNKVVSNLPYQI 103 (258)
T ss_pred -hceEEEEcCCccc
Confidence 5899999988753
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-10 Score=100.46 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~i~~~~~l~ 141 (291)
++.+|||++||+|..++.++...+..+|+++|+++..++.+++|++.++++++.+..+|+..+.. ..+||+|+++..
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 35699999999999999998876445899999999999999999999998778899999987543 367999999753
Q ss_pred ccccHHHHHHHHHhccccCeeEEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.....++....+.+++||+++++
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEE
Confidence 34467888877889999999997
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=93.82 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEE-ccccCCc-----cCCCccEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIV-ADISTFE-----MEASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~v~~~~-~d~~~~~-----~~~~~D~i 134 (291)
++.++||||||+|.....++.+.++.+++|+|+++.+++.|++++..+ ++ +++.++. .|..... ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999988888887777899999999999999999999998 67 4677754 3332221 12689999
Q ss_pred EEccccccc
Q 022864 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+|+.+++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999998754
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-10 Score=96.93 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+. ++++++.+|+.+...
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 456777888888888999999999999999999987 67899999999999999998877663 589999999988654
Q ss_pred CCCccEEEEccccccc
Q 022864 128 EASYDRIYSIEMFEHM 143 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~ 143 (291)
..||+|+++.+++.-
T Consensus 100 -~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 -PYFDVCVANVPYQIS 114 (294)
T ss_pred -cccCEEEecCCcccC
Confidence 478999998777544
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=90.76 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
...++||||+|.|..+..++..+ .+|++.|.|+.|. .+.++.|. ++ .|..++... .+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr----~rL~~kg~---~v--l~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMR----WRLSKKGF---TV--LDIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHH----HHHHhCCC---eE--EehhhhhccCCceEEEeehhhhh
Confidence 46789999999999999999874 4899999999974 44445554 22 233333322 6899999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
...++..+++.+++.|+|+|+++++..-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999987653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-09 Score=89.86 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCcc----CCCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~----~~~~D~i 134 (291)
....+||||.||.|..........|. .+|...|.|+..++..++.+++.|+.++ +|.++|+.+... ....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999988888876 7999999999999999999999999765 999999988531 1457999
Q ss_pred EEccccccccc---HHHHHHHHHhccccCeeEEEE
Q 022864 135 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+.++.++.++| ....+..+.+++.|||+++..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 99999999977 456788999999999998763
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=92.37 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 124 (291)
.+.+.+..+++. .+..+|||||+++|..+.+++... ++.+|+.+|.+++..+.|+++++..|+ ++|+++.+|+.+
T Consensus 66 ~~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 66 DEGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 334455555543 346799999999999999999765 467999999999999999999999997 689999999877
Q ss_pred Ccc--------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 125 FEM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 125 ~~~--------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
... .++||+|+....= ..+...++.+.+.|+|||++++..
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence 421 1589999997542 456778888999999999988743
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-10 Score=97.12 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc----CCCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM----EASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~----~~~~D~i~~ 136 (291)
.+.+|||+-|=+|+++...+... ..+|+.||.|..+++.+++|+..+++ ++++++..|+.++.. .++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 47899999999999999987541 34899999999999999999999997 479999999987432 278999999
Q ss_pred cccccc------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 137 IEMFEH------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++-.. ..++..++..+.++|+|||.|++++..+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 875321 1467889999999999999998876643
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-10 Score=95.62 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=94.5
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccC-CCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME-ASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~-~~~ 131 (291)
.++......+|..|||--||||++.+.+.-. |++++|+|++..|++-++.|.+..+++...+... |+..++++ ..+
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~v 265 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSV 265 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCcc
Confidence 3444456788999999999999999998755 9999999999999999999999988766666655 99999887 459
Q ss_pred cEEEEccccccc-----cc----HHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHM-----KN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~-----~~----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|.|++..+..-- .. +.++++.+.++||+||++++..+
T Consensus 266 daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 266 DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999998876432 11 57799999999999999999776
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-10 Score=96.70 Aligned_cols=103 Identities=28% Similarity=0.421 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
+-.++.|||+|||+|.++...|+.+ ..+|++||.|.-+ +.|.+.+..+++++ |+++.+.+++...| ++.|+|+|-.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 4578999999999999999999875 6799999986655 99999999999954 89999999998877 9999999966
Q ss_pred ccccc---ccHHHHHHHHHhccccCeeEEE
Q 022864 139 MFEHM---KNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+=+.+ .=+..++-.=-+.|+|||.++=
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 44333 1133444444589999998753
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-10 Score=96.64 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
..++.+++.+...++.+|||+|||+|.++..++++. .+|+|+|+++.+++.+++++.. +++.++++|+.+++.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 455677777778888999999999999999999884 4999999999999999886642 48999999999986542
Q ss_pred C-ccEEEEcccccccccHHHHHHHHH
Q 022864 130 S-YDRIYSIEMFEHMKNYQNLLKKIS 154 (291)
Q Consensus 130 ~-~D~i~~~~~l~~~~~~~~~l~~~~ 154 (291)
- +|.|+++.++..- ..++.++.
T Consensus 104 ~~~~~vv~NlPY~is---s~ii~~~l 126 (272)
T PRK00274 104 LQPLKVVANLPYNIT---TPLLFHLL 126 (272)
T ss_pred cCcceEEEeCCccch---HHHHHHHH
Confidence 2 5899998776432 34444444
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=98.33 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022864 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 123 (291)
-......++..+++.+...++.+|||+-||.|.++..++++ ..+|+|+|+++++++.|+++++.++++|+.|+.++.+
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae 351 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAE 351 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHH
Confidence 34455678888888888888999999999999999999976 7799999999999999999999999988999999999
Q ss_pred CCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 124 TFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 124 ~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++... ..+|.|+...+=.... ..+++.+. .++|..+++++.
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCCC--HHHHHHHH-hcCCCcEEEEeC
Confidence 97544 4789999987765443 24444444 467888888754
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=96.45 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
..++..+++.+...+ .+|||+|||+|.++..+++.. .+|+|||+++.+++.++++++.++++++.++.+|+.++...
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 445556656554333 479999999999999999874 59999999999999999999999988899999999774321
Q ss_pred -----------------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -----------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -----------------~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..||+|+...+-..+ ...+++.+.+ |+++++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL--DPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCCCC--cHHHHHHHHc---CCcEEEEEc
Confidence 137999998884322 3455565554 777777754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=95.57 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
+.+++.+.+.+... +.+|||++||+|.++..+++. ..+|+|||.++.+++.+++|+..++++++.++.+|+.+...
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 45555665554432 357999999999999998876 45999999999999999999999998889999999977421
Q ss_pred ----------------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 ----------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ----------------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+||+|+...+-..+ ...+++.+.+ |+++++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISC 320 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEe
Confidence 1258999999885322 3556666654 677776654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.6e-10 Score=90.30 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
..++.+|+|+.||.|.+++.+++..++..|+++|++|..++.++++++.++++ ++..+++|..++.....+|.|+++.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 46789999999999999999998655789999999999999999999999984 58999999999876688999999765
Q ss_pred ccccccHHHHHHHHHhccccCeeEE
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
-. ...++..+.+++++||++-
T Consensus 179 ~~----~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES----SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS----GGGGHHHHHHHEEEEEEEE
T ss_pred HH----HHHHHHHHHHHhcCCcEEE
Confidence 43 2357777889999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.2e-10 Score=90.25 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----C----------------------
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----Q---------------------- 113 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~---------------------- 113 (291)
...+..+|||||..|.++..+++.+....|.|+|+++..|..|+++.+..-- .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 3467899999999999999999998566899999999999999887643110 0
Q ss_pred --------Ce-------EEEEccccCCccCCCccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEE
Q 022864 114 --------NV-------EIIVADISTFEMEASYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 114 --------~v-------~~~~~d~~~~~~~~~~D~i~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
++ .+...|+.+. ....||+|+|..+-.|+ ..+..+++++.++|.|||+|++.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 11 1111222211 12679999998876555 45789999999999999999883
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=93.38 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCcch----HHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHH------------------HH-----hC
Q 022864 63 DGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQC------------------RV-----LE 111 (291)
Q Consensus 63 ~~~~vLDiGcG~G~----~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~------------------~~-----~~ 111 (291)
+..+|+..||.+|. ++..+.+..+ ..+|+|+|+|+.+++.|++.. .. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35799999999996 4444444321 368999999999999998741 00 01
Q ss_pred -------C-CCeEEEEccccCCcc--CCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022864 112 -------L-QNVEIIVADISTFEM--EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 112 -------~-~~v~~~~~d~~~~~~--~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+ +.|.|...|+.+.+. .+.||+|+|.+++.|+ +...++++++.+.|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1 358999999988543 3889999999999999 457889999999999999988743
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=83.15 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=112.1
Q ss_pred HHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCC
Q 022864 10 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNC 88 (291)
Q Consensus 10 ~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~ 88 (291)
.++..+|..-.|++.|++.....+ +..++. .-..+.++..++...+..|||+|.|+|-++..+.++. +..
T Consensus 4 ~~~~~f~~e~~F~k~wi~~PrtVG-aI~PsS--------s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~ 74 (194)
T COG3963 4 KLARKFDEEISFFKGWIDNPRTVG-AILPSS--------SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPE 74 (194)
T ss_pred HhhhhHHHHHHHHHHHhcCCceee-eecCCc--------HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCcc
Confidence 345567777889999998766553 233211 2334455566678889999999999999999998873 456
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----cC-CCccEEEEcccccccc--cHHHHHHHHHhccccC
Q 022864 89 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----ME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKED 160 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~Lkpg 160 (291)
.+++++.|++.+....+.. +.+.++.+|+.++. .. ..||.|+|.-++-.++ ...++++.+...|.+|
T Consensus 75 ~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 75 SLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred ceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 8999999999988877654 35678999998875 11 6799999998877663 4567999999999999
Q ss_pred eeEEEEeecc
Q 022864 161 TLLFVHHFCH 170 (291)
Q Consensus 161 G~l~~~~~~~ 170 (291)
|.++-.+.++
T Consensus 150 g~lvqftYgp 159 (194)
T COG3963 150 GPLVQFTYGP 159 (194)
T ss_pred CeEEEEEecC
Confidence 9998877764
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-09 Score=78.39 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=75.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~ 129 (291)
+.+.+.+....+.+|||+|||.|. ++..|++. +.+|+++|+++..++.++++ .++++.+|+.+.... +
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHh
Confidence 344455555567899999999996 88888866 88999999999977766553 368999999997766 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.+|+|.+..+- ++....+-++.+. -|.-+++...+.+
T Consensus 77 ~a~liysirpp---~el~~~~~~la~~--~~~~~~i~~l~~e 113 (134)
T PRK04148 77 NAKLIYSIRPP---RDLQPFILELAKK--INVPLIIKPLSGE 113 (134)
T ss_pred cCCEEEEeCCC---HHHHHHHHHHHHH--cCCCEEEEcCCCC
Confidence 89999997654 3344444444442 3556666555443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=95.81 Aligned_cols=159 Identities=21% Similarity=0.302 Sum_probs=123.4
Q ss_pred hhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC
Q 022864 8 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87 (291)
Q Consensus 8 ~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~ 87 (291)
...+...|+...++|...|+..++.+. +... ....+...+.-...+-+....++..++|+|||.|....+++.. ..
T Consensus 58 ~e~~~~~y~~~~dl~~~~w~~~~h~~~--~~e~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~~ 133 (364)
T KOG1269|consen 58 PEQIAKYYNNSTDLYERNWGQSFHFGR--IPEG-NSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-KK 133 (364)
T ss_pred chHHHHHhcccchhhhhhhccchhccC--ccch-hHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh-cc
Confidence 355778999999999999998776632 2211 1222222222222223345667889999999999999999865 37
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 88 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+.++|+|.++..+..+........++ +..++.+|+...+++ ..||.+.+..+..|.++...+++++.++++|||+++.
T Consensus 134 ~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 134 AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 89999999999998888887777773 466688899888777 8999999999999999999999999999999999988
Q ss_pred Eeecc
Q 022864 166 HHFCH 170 (291)
Q Consensus 166 ~~~~~ 170 (291)
.....
T Consensus 214 ~e~i~ 218 (364)
T KOG1269|consen 214 KEWIK 218 (364)
T ss_pred HHHHH
Confidence 66654
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=92.20 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
-.++.|||+|||+|.++...++.. ..+|++|+. .+|.++|++..+.+.+ ++|.++.+-+++...+++.|+|++-.+=
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 367899999999999999988774 579999998 5788999998888776 6899999999999989999999986543
Q ss_pred ccc--ccHHHHHHHHHhccccCeeEEEE
Q 022864 141 EHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~--~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.-+ +..-+..-..++.|||.|.++-.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 222 22222333456999999997643
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-09 Score=89.21 Aligned_cols=99 Identities=18% Similarity=0.324 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||+|||+|.++..++++. ..|+++|+++.+++.+++++.. .+++.++.+|+...+.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 3556777777788889999999999999999999884 4799999999999998877643 34799999999987654
Q ss_pred CCcc---EEEEcccccccccHHHHHHHHHh
Q 022864 129 ASYD---RIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 129 ~~~D---~i~~~~~l~~~~~~~~~l~~~~~ 155 (291)
.+| +|+++.+++. ...++.++..
T Consensus 91 -~~d~~~~vvsNlPy~i---~~~il~~ll~ 116 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYNI---SSPLIFKLLE 116 (253)
T ss_pred -HcCCcceEEEcCChhh---HHHHHHHHhc
Confidence 456 8888877642 2345555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=99.36 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHHHcC-------CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe
Q 022864 43 TLEDAEKAMLELYCERSR-------LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~-------~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v 115 (291)
.+.+.|.+.++....... ...+..+||||||.|.+...+|..+|...++|+|+....+..+.+.+...+++|+
T Consensus 320 ~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 320 SLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 566677666655443332 2346799999999999999999999999999999999999999998888889899
Q ss_pred EEEEccccCCc--c-CCCccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 116 EIIVADISTFE--M-EASYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 116 ~~~~~d~~~~~--~-~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++..|+..+. . ++++|.|+.+.+-.|.+. ...+++.+.+.|||||.+.+.+-
T Consensus 400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 99888875432 2 378999999988777632 36799999999999999998664
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-09 Score=85.54 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=87.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC-ccEEEEcccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS-YDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~i~~~~~l~~ 142 (291)
+.+++|||+|.|..++.++-.+|..+|+.+|....-+...++...+.+++|++++++.++++....+ ||+|+|..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 5899999999999999999888999999999999999999999999999899999999999875544 9999998544
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+...+++-+...+|+||.+++
T Consensus 146 --~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 --SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --chHHHHHHHHHhcccCCcchh
Confidence 677888889999999998754
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-09 Score=95.06 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=91.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~ 136 (291)
+..++.+|||++||+|+-+..+++... ...|+++|+++.-++.++++++..|+.++.+...|...+.. +..||.|++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 567899999999999999999998753 35899999999999999999999999889999999887532 267999997
Q ss_pred ccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 137 IEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
..+.... + -..++|..+.+.|||||+|+-++++.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 5543211 1 13668999999999999998887764
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-09 Score=90.52 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~D~i~ 135 (291)
+...+||.||+|.|..++++.+..+..+|++||+++++++.+++.+...+ .++++++.+|...+... ++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45679999999999999999876556789999999999999998875432 25899999999886432 7899999
Q ss_pred Ecccccc--c-c---cHHHHHH-HHHhccccCeeEEEEe
Q 022864 136 SIEMFEH--M-K---NYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~--~-~---~~~~~l~-~~~~~LkpgG~l~~~~ 167 (291)
+...-.. . . -..++++ .+.+.|+|||+++++.
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8742110 0 0 1346787 8999999999988754
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=92.86 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-------CCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVA 120 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~ 120 (291)
...+.++..+...++.+|+|.+||+|.+...+.+. .+..+++|+|+++..+..++-++.-.+. .+..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 34445555567778889999999999998888763 2578999999999999999887766665 23468888
Q ss_pred cccCCccC---CCccEEEEccccccc--c-------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 121 DISTFEME---ASYDRIYSIEMFEHM--K-------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 121 d~~~~~~~---~~~D~i~~~~~l~~~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|....+.. .+||+|+++.++... . .--.++..+.+.|++||++.+..|..
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 87664432 589999999987544 0 01247899999999999988877753
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=79.05 Aligned_cols=107 Identities=14% Similarity=0.227 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
...-+||||||+|-.+..|++.. |++.+.++|++|.+.+..++.++.++. +++.++.|+.+--.+++.|+++.+.++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcC
Confidence 36789999999999999998774 677899999999999999998888877 7899999998855458999999988653
Q ss_pred ccc-----------------c----HHHHHHHHHhccccCeeEEEEeecc
Q 022864 142 HMK-----------------N----YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~-----------------~----~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
--+ + .++++..+-..|.|.|++++.....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 221 1 3567777888999999999876543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=80.23 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022864 50 AMLELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 126 (291)
+.-..++..+.. -.+.++||+-+|+|.++.+.+.++ ...++.||.+...+..+++|.+..++ .++.++..|.....
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 333445555543 578999999999999999999985 67999999999999999999998885 47889999988542
Q ss_pred --cC--CCccEEEEccccccc-ccHHHHHHH--HHhccccCeeEEEEeecc
Q 022864 127 --ME--ASYDRIYSIEMFEHM-KNYQNLLKK--ISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 --~~--~~~D~i~~~~~l~~~-~~~~~~l~~--~~~~LkpgG~l~~~~~~~ 170 (291)
.. .+||+|+...+++.- -+....+.. -..+|+|+|.+++.....
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 12 359999999999721 222233333 457899999999976544
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-09 Score=88.45 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
+....++|||||.|.....+.... -.+++-+|.|..|++.++. +...++ .+....+|-+.+++. .++|+|+++..+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~-~qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRD-AQDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhc-cCCCce-EEEEEecchhcccccccchhhhhhhhhh
Confidence 345689999999999999998774 4589999999999887754 223333 466777888888877 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
||+.+++.-+.+++..|||+|.++-+..+..+
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 99999999999999999999999887766544
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-09 Score=89.15 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcC---CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEcc
Q 022864 49 KAMLELYCERSR---LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVAD 121 (291)
Q Consensus 49 ~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d 121 (291)
.....+++..+. .+..++||-||.|.|..++.+.+..+-.+++.||+++..++.+++.+.... -+++.++..|
T Consensus 59 e~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 59 EFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred hHHHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 334444444432 233469999999999999999988767899999999999999999886654 3689999999
Q ss_pred ccCCccC--CCccEEEEcccccccc----cHHHHHHHHHhccccCeeEEEE
Q 022864 122 ISTFEME--ASYDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 122 ~~~~~~~--~~~D~i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..++... .+||+|++...-..-+ ....+++.+++.|+++|+++.+
T Consensus 139 g~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 139 GVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9887544 5799999865443111 2378999999999999999987
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=84.18 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=66.4
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
-++.+++.+.. +++..|-|+|||.+.++..+.+ +.+|+..|+-+. +-.++.+|+...|.+
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS-S--T
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccCcCCC
Confidence 35566666554 3467999999999999866542 468999998543 224678999999887
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+..|++|++.+|.. .++..++.++.|+|||||.|.|.....+
T Consensus 121 ~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 121 ESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp T-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred CceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 89999999877754 4789999999999999999999887543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-09 Score=79.52 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
++..+-...+.-.|++++|+|||.|-++...+ .+....|.|+|+++++++.+.+|+.+..+ ++++.++|+.+..+. +
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCC
Confidence 44444455565679999999999999996554 33356899999999999999999998877 789999999998777 8
Q ss_pred CccEEEEccccccc
Q 022864 130 SYDRIYSIEMFEHM 143 (291)
Q Consensus 130 ~~D~i~~~~~l~~~ 143 (291)
.||.++.+.++..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 89999999988654
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=82.02 Aligned_cols=111 Identities=24% Similarity=0.244 Sum_probs=85.4
Q ss_pred HHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhC--------C--CCeE
Q 022864 51 MLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE--------L--QNVE 116 (291)
Q Consensus 51 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--------~--~~v~ 116 (291)
+...+++.+. +.||.+.||+|+|+|.++..++... ++..++|||.-++.++.++++..+.- + .++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3344444444 6799999999999999999888553 34556999999999999999886542 2 3578
Q ss_pred EEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 117 IIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 117 ~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++.+|......+ .+||.|.+...- .++-+++...|+|||.+++-.
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 999999987655 899999998444 345566788899999998843
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-09 Score=86.84 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---
Q 022864 50 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST--- 124 (291)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~--- 124 (291)
.++..+++..+. .++.+|||+|||+|.++..+++.. ..+|+|+|+++.|+.... +.. +++ .+...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l---~~~--~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKL---RQD--ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHH---hcC--CCeeEeecCCcccCCH
Confidence 356667776654 478899999999999999999872 468999999998876521 111 122 233334442
Q ss_pred --CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 --FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 --~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...+ ..+|+++++. ..++..+.++|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEE
Confidence 2211 3455555432 3358889999999 76554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-08 Score=87.93 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
......+++.+++.++..++ +|||+-||.|.++..++.. ..+|+|||+++.+++.|+++++.++++|++|+.++.++
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 33446778888888887666 8999999999999999987 67999999999999999999999999999999987765
Q ss_pred Ccc----------------C-CCccEEEEcccccccccHHHHHHHHH
Q 022864 125 FEM----------------E-ASYDRIYSIEMFEHMKNYQNLLKKIS 154 (291)
Q Consensus 125 ~~~----------------~-~~~D~i~~~~~l~~~~~~~~~l~~~~ 154 (291)
+.. . ..+|+|+..++=..+. ..+++.+.
T Consensus 256 ~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~~~~ 300 (352)
T PF05958_consen 256 FAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKVIELIK 300 (352)
T ss_dssp CCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHHHHHHH
T ss_pred hhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHHHHHHh
Confidence 321 1 2589999988766554 33444443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=86.27 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
.+|.+|||.-+|.|.+++.+|... ..+|+++|++|.+++.+++|++.+++.+ +..+++|..+.... ..+|-|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 459999999999999999999874 3349999999999999999999999954 89999999998877 88999999754
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
- +...++....+.+++||++.+....+..
T Consensus 266 ~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K----SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred C----cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 4 5567888888999999999888776654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.5e-09 Score=81.29 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=57.5
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CC-ccEEEEccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---AS-YDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~---~~-~D~i~~~~~ 139 (291)
..|+|+.||.|+.++.+|+. ..+|+++|+++..++.++.|++..|+ ++|.++++|+.+.... .. +|+|+++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999987 56899999999999999999999997 5899999999986533 12 899999876
Q ss_pred cc
Q 022864 140 FE 141 (291)
Q Consensus 140 l~ 141 (291)
..
T Consensus 79 WG 80 (163)
T PF09445_consen 79 WG 80 (163)
T ss_dssp BS
T ss_pred CC
Confidence 53
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=83.80 Aligned_cols=90 Identities=19% Similarity=0.364 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.....++.+|||||+|.|.++..|+++ +.+|+++|+++.+++..++... ..++++++.+|+.....+
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 345788888888888999999999999999999998 7789999999999998888765 235899999999998877
Q ss_pred C--CccEEEEcccccc
Q 022864 129 A--SYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~--~~D~i~~~~~l~~ 142 (291)
. .++.|+++-+.+-
T Consensus 92 ~l~~~~~vVaNlPY~I 107 (259)
T COG0030 92 SLAQPYKVVANLPYNI 107 (259)
T ss_pred hhcCCCEEEEcCCCcc
Confidence 4 7899999987743
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-08 Score=87.76 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=86.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
+.+|||+.||+|..++.++.+.++ .+|+++|+++..++.+++|++.++++++.+++.|+..+... .+||+|.... +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 469999999999999999987533 58999999999999999999998887789999999886433 6799999976 4
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEee
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.....++..+.+.+++||.+++...
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 3446789999999999999999743
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=87.67 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.+++++++.+...++..++|.+||.|+.+..+++..+ ..+|+|+|.++.+++.++++... .+++.++++|+.++...
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 3677888888888889999999999999999999874 58999999999999999988755 35899999999986422
Q ss_pred --C---CccEEEEccc
Q 022864 129 --A---SYDRIYSIEM 139 (291)
Q Consensus 129 --~---~~D~i~~~~~ 139 (291)
. ++|.|++..-
T Consensus 84 l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 84 LAEGLGKVDGILLDLG 99 (296)
T ss_pred HHcCCCccCEEEECCC
Confidence 2 7999998653
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-08 Score=85.28 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------C-------E
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------C-------K 89 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------~-------~ 89 (291)
..+...++...+..++..++|--||+|++.++.|...++ + .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 345566677778888899999999999999999876431 1 2
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc-------c-cHHHHHHHHHhcccc
Q 022864 90 ITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM-------K-NYQNLLKKISKWMKE 159 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~-------~-~~~~~l~~~~~~Lkp 159 (291)
++|+|+++.+++.|+.|++..|+ +.|.|.++|+.++..+ +.+|+||||.+..-- . -+..+.+.+++.++-
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 77999999999999999999999 4699999999999877 899999999987422 1 234455566677777
Q ss_pred CeeEEEEee
Q 022864 160 DTLLFVHHF 168 (291)
Q Consensus 160 gG~l~~~~~ 168 (291)
-+..++.+.
T Consensus 337 ws~~v~tt~ 345 (381)
T COG0116 337 WSRYVFTTS 345 (381)
T ss_pred CceEEEEcc
Confidence 777777543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=85.48 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--C-CccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--A-SYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~-~~D~i 134 (291)
+.+.+||-||.|.|..+..+.+..+..+|++||+++..++.+++.+.... -++++++.+|...+... + +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46789999999999999999866445799999999999999999776532 25899999999886433 5 89999
Q ss_pred EEcccccccc----cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+....-...+ -...+++.++++|+|||++++...+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 9865432111 13689999999999999999877443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-08 Score=82.21 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 128 (291)
..++.++++.+++++..|||+|.|||.++..|.+. +++|+++++++.|+....++...... .+++++.+|....+.
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 35678889999999999999999999999999998 89999999999999999988865554 369999999998764
Q ss_pred CCccEEEEccccc
Q 022864 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~i~~~~~l~ 141 (291)
..||.+|++-++.
T Consensus 122 P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQ 134 (315)
T ss_pred cccceeeccCCcc
Confidence 3689999977664
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=83.46 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CC
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----AS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~ 130 (291)
..++..++.+|||++++.|+=+.++++..+ +..|+++|.++.-+...+++++..|+.++..+..|....+.. .+
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 446788999999999999999999998754 356799999999999999999999998888888887765322 35
Q ss_pred ccEEEEccccccc------cc----------------HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
||.|++..+.... ++ ..+++....+.|||||.|+.++++..
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9999986643221 11 45699999999999999999887653
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-08 Score=79.23 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------HhCC--CCeEEEE
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL--QNVEIIV 119 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~--~~v~~~~ 119 (291)
...+..+++.+++.++...+|||||.|......+...+-.+++|||+.+...+.|+...+ ..|. .++.+..
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 345667778888899999999999999998888866634469999999998887765332 2233 3688889
Q ss_pred ccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 120 ADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 120 ~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+|+.+.+.. ...|+|++++..- -++....+.+....||+|.+++.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 998774321 4679999987652 24556666777788999888654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=92.16 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC----C--------------------------------------
Q 022864 50 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY----S-------------------------------------- 86 (291)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~----~-------------------------------------- 86 (291)
.+...++...+. .++..++|.+||+|++.++.+... |
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 344556666666 568899999999999999887531 1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC---CCccEEEEccccccc----ccHHHHHHHHHhccc
Q 022864 87 NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKISKWMK 158 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~~----~~~~~~l~~~~~~Lk 158 (291)
..+++|+|+++.+++.|++|+...|+. .+.+.++|+.+++.+ +++|+|+++.++..- .+...+...+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 136999999999999999999999984 589999999987544 469999999987533 233445455544444
Q ss_pred ---cCeeEEEEeec
Q 022864 159 ---EDTLLFVHHFC 169 (291)
Q Consensus 159 ---pgG~l~~~~~~ 169 (291)
+|+.+++.+..
T Consensus 336 ~~~~g~~~~llt~~ 349 (702)
T PRK11783 336 QQFGGWNAALFSSS 349 (702)
T ss_pred HhCCCCeEEEEeCC
Confidence 88888776654
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=78.09 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=93.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~- 128 (291)
+..++..+...||.+|||-|.|+|.++..+++.. |..+++.+|....-.+.|.+.+++.++ +++++..-|+...-+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 5667778899999999999999999999999874 678999999999999999999999998 5899999999885443
Q ss_pred --CCccEEEEcccccccccHHHHHHHHHhccccCe-eEEEEeecc
Q 022864 129 --ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHHFCH 170 (291)
Q Consensus 129 --~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~ 170 (291)
..+|.|+.. ++.+...+..+.++||.+| +++-.+|+.
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 568888774 5566777888888999877 555444443
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.9e-08 Score=81.26 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=77.0
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
++.+++.+.. +....|-|+|||.+.++. .. ...|+.+|+-+. +-+++.+|+...|.+ +
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV---------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---------------CCceeeccccCCcCccC
Confidence 5566666544 345688899999988765 22 457999998432 456788999998877 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+.|++|++.++.. .++..++.++.|+|+|||.++|.....
T Consensus 228 svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred cccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh
Confidence 9999998877643 588999999999999999999987754
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=80.42 Aligned_cols=109 Identities=10% Similarity=-0.029 Sum_probs=80.9
Q ss_pred HHHHHHHH---cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEcccc
Q 022864 51 MLELYCER---SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADIS 123 (291)
Q Consensus 51 ~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~ 123 (291)
..++++-. +..+..++||=||.|.|..++++.+. | .+|+.||+++++++.+++..... +. ++++++.. +.
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~ 133 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL 133 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh
Confidence 44444433 24567789999999999999999965 4 49999999999999999855432 22 47777652 22
Q ss_pred CCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+ ...++||+|++...+ ...+.+.++++|+|||+++.+.-
T Consensus 134 ~-~~~~~fDVIIvDs~~-----~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 134 D-LDIKKYDLIICLQEP-----DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred h-ccCCcCCEEEEcCCC-----ChHHHHHHHHhcCCCcEEEECCC
Confidence 1 112689999987542 36788999999999999998654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-08 Score=76.27 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=91.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
+.+.++-..-.+++|||+|+|+|..++..+... ...|+..|+.|..+..+.-|++.+|. ++.+...|.-. .+..||
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCccee
Confidence 344444455678999999999999999988764 56899999999999999889999887 78999988877 347899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
+++...++..-....+++....++...|-.+++.++.+...+
T Consensus 145 l~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 145 LLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred EEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCCc
Confidence 999999887666667777744455455666777777665544
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=80.68 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=70.8
Q ss_pred HHHHHHHHcC-CC--CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 51 MLELYCERSR-LE--DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~-~~--~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
++.++.++.+ .. ++.+|||+||++|+++..+.++. +..+|+|+|+.+. ...+++.++++|+.+..
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEE
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhh
Confidence 5667777666 44 45999999999999999999875 4589999999876 12235666666665421
Q ss_pred ---------cC--CCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 ---------ME--ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ---------~~--~~~D~i~~~~~l~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. +++|+|+|..+.... .-....+.-+.+.|+|||.+++..+.
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 489999998833222 12234555666789999999887664
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.6e-08 Score=86.31 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=95.4
Q ss_pred HHHHHhhCCCCCccc-cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHH
Q 022864 20 SFFKLVLGKYFKYSC-CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT 98 (291)
Q Consensus 20 ~~~~~~~~~~~~y~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~ 98 (291)
-.++.+++-+...|. ++|+.. ..+.+.....+-+.++.+++..+||+.||||.++..+++. -.+|+||+++++
T Consensus 343 ~I~E~l~~ltF~iSp~AFFQ~N----t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 343 YITESLLGLTFRISPGAFFQTN----TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPD 416 (534)
T ss_pred EEEeecCCeEEEECCchhhccC----cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChh
Confidence 445555555555665 455422 2233445556667788889999999999999999999976 679999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEccccCCccC------CCcc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 99 QKEFIEEQCRVLELQNVEIIVADISTFEME------ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 99 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------~~~D-~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++.|+.++..+|+.|++|+++-+++.-.. ..-+ +++...+=..+ ...+++.+++.-+|-=.++++.
T Consensus 417 aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl--h~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 417 AVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL--HMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred hcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcccc--cHHHHHHHHhccCccceEEEEc
Confidence 999999999999999999999977764322 2335 33343332211 1345555555544555555543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.7e-07 Score=77.56 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~ 126 (291)
.+.+.++-..+..-.+.+|||+|||+|..+..+...++ -.+++++|.|+.+++.++..+...... ...+......+..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 44566666555555677999999999988777766664 348999999999999998876543221 1111111111111
Q ss_pred cCCCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 127 MEASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.-...|+|++.++|..+++ ...+++.+.+.+++ .|++..++.+
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 1134599999999998865 33456666555555 8888777654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-08 Score=89.93 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEE---cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGI---CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
.-..+||+|||+|+++.+|.++ +..+..+ |..+.+++.|. +.|++- -+-..-...++++ ..||+|.|..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfal----eRGvpa-~~~~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFAL----ERGVPA-MIGVLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhh----hcCcch-hhhhhccccccCCccchhhhhccc
Confidence 3457899999999999999987 4443333 33334444443 345521 1111223456766 8999999998
Q ss_pred ccccc-ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 139 MFEHM-KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 139 ~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++... .+-.-+|-++-|+|+|||+++.+.+...
T Consensus 190 c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 190 CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 77655 3334578889999999999999776543
|
; GO: 0008168 methyltransferase activity |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-08 Score=80.31 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=82.9
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCcc
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~---~~~D 132 (291)
+..+.+.+|||.+.|-|..++..+++ |+ +|+.++.+++.++.|+-|-=..++ .++.++.+|+.++... ++||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 34567999999999999999999988 66 999999999988877654322223 2579999999886433 7899
Q ss_pred EEEEccccccc-c--cHHHHHHHHHhccccCeeEEEEee
Q 022864 133 RIYSIEMFEHM-K--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~i~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+|+-..+--.. . -..++.+++.++|||||.++-.+-
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 99987643322 1 236789999999999999876543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-07 Score=77.02 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=91.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 133 (291)
.+...++.+|||++++.|+-+..+++... ...++++|+++.-+...++++++.|..++.....|....... ..||.
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 35678899999999999999999998864 579999999999999999999999998888888888876322 46999
Q ss_pred EEEccccccc------cc----------------HHHHHHHHHhcc----ccCeeEEEEeecc
Q 022864 134 IYSIEMFEHM------KN----------------YQNLLKKISKWM----KEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~------~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~~ 170 (291)
|+...+-... ++ ..++++.+.+.+ ||||+++-++.+.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 9985533211 11 356899999999 9999999988764
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=79.75 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=80.0
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
-...+|+|.|.|..+..+..++| +|-+++.+...+..+..... +.|..+.+|..+. .| +-|+|++..+++|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P-~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TP-KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc----CCcceeccccccc-CC-CcCeEEEEeecccC
Confidence 47899999999999999999877 46677777766655555442 2478889999886 33 34799999999999
Q ss_pred --ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 144 --KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 144 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++..++|+++.+.|+|||.+++.+...+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 4578899999999999999999876443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-08 Score=75.78 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=81.9
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc--
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH-- 142 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~-- 142 (291)
..+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+|.+-.|..++.++.+|+.+..+ +..|+|+|-..=..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988876 67999999999999999999888888899999999999877 67899988532111
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.+....+++.+...|+-++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 14456688888889999998764
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=78.68 Aligned_cols=118 Identities=23% Similarity=0.244 Sum_probs=77.5
Q ss_pred HHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----------------
Q 022864 51 MLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----------------- 111 (291)
Q Consensus 51 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----------------- 111 (291)
.+..+.+.. +...+.++||||||+-.....-+..+ -.+|+..|.++..++..++..+..+
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~ 120 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGK 120 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCC
Confidence 344444333 23457899999999865543333332 3589999999999987776553321
Q ss_pred ----------C-CCe-EEEEccccCCccC-------CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEee
Q 022864 112 ----------L-QNV-EIIVADISTFEME-------ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 112 ----------~-~~v-~~~~~d~~~~~~~-------~~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+ ..| .++.+|+.+.++- .+||+|++..+++.. +.+...++++.++|||||.|++...
T Consensus 121 ~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 121 REKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 0 012 4777888874321 359999999999877 4567799999999999999998766
Q ss_pred c
Q 022864 169 C 169 (291)
Q Consensus 169 ~ 169 (291)
.
T Consensus 201 l 201 (256)
T PF01234_consen 201 L 201 (256)
T ss_dssp S
T ss_pred c
Confidence 3
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=71.57 Aligned_cols=112 Identities=13% Similarity=0.193 Sum_probs=89.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE- 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~- 126 (291)
..+..+++.. .+.++||||.=+|..+...|...| +.+|+++|++++..+.+.+..+..|. .+|+++++++.+..
T Consensus 63 ~fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 3455555543 467999999999999999888774 67999999999999999999998888 57999999887732
Q ss_pred ------cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 ------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+.||+++...-= .++...++++.+++++||++++..
T Consensus 140 ~l~~~~~~~tfDfaFvDadK---~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVDADK---DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEEccch---HHHHHHHHHHHhhcccccEEEEec
Confidence 12789999986321 345678999999999999998854
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=65.92 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHH-----HCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CCeEEEEccccCCccCCCcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQ-----KYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~D 132 (291)
..+..+|+|+|||.|.++..|+. . ++.+|++||.++..++.+.++.+..+ . .++.+..+++.+.......+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 36788999999999999999998 4 58899999999999999999988877 3 46777777776654345678
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+++..+.-..+. ..+++...+ |+-..++.
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 888765443332 445555544 55554443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=82.56 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC--------CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----c-cC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----E-ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~ 128 (291)
...+|||.|||+|.+...++...+ ...++|+|+++..+..++.++...+.-.+.+...|.... . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999998887642 157899999999999999887765521344555553321 1 11
Q ss_pred CCccEEEEccccccccc----------------------------------------------HHHHH-HHHHhccccCe
Q 022864 129 ASYDRIYSIEMFEHMKN----------------------------------------------YQNLL-KKISKWMKEDT 161 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~----------------------------------------------~~~~l-~~~~~~LkpgG 161 (291)
+.||+|++++++.-... +..++ +.+.+.|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 58999999998764310 01133 56789999999
Q ss_pred eEEEEeecc
Q 022864 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~~~~~~~ 170 (291)
++.+..|..
T Consensus 191 ~~~~I~P~s 199 (524)
T TIGR02987 191 YVSIISPAS 199 (524)
T ss_pred EEEEEEChH
Confidence 999887764
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-06 Score=72.80 Aligned_cols=104 Identities=16% Similarity=0.268 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
....+.+++.+...++..|||+|+|.|.++..|.+. +.+++++|+++...+..++... ..+++.++.+|+.++...
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccH
Confidence 456777888888889999999999999999999988 5899999999999888887655 235899999999998755
Q ss_pred C----CccEEEEcccccccccHHHHHHHHHhcccc
Q 022864 129 A----SYDRIYSIEMFEHMKNYQNLLKKISKWMKE 159 (291)
Q Consensus 129 ~----~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkp 159 (291)
. ....|+++-++ ++ ...++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 3 56688887666 33 24566666653333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.47 E-value=5e-06 Score=72.85 Aligned_cols=116 Identities=6% Similarity=0.018 Sum_probs=82.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE--EEccccCC-
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCRVLELQNVEI--IVADISTF- 125 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~--~~~d~~~~- 125 (291)
..+++.+ .++..|+|+|||.|.-+..|.+.. ...+++++|+|.++++.+.++......+.+.+ +++|+.+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 3444443 467799999999999877766543 24689999999999999998887444445544 78888663
Q ss_pred ---cc---CCCccEEEEcc-cccccc--cHHHHHHHHHh-ccccCeeEEEEeecc
Q 022864 126 ---EM---EASYDRIYSIE-MFEHMK--NYQNLLKKISK-WMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ---~~---~~~~D~i~~~~-~l~~~~--~~~~~l~~~~~-~LkpgG~l~~~~~~~ 170 (291)
+. .....+++..+ ++..++ ....+++++++ .|+|||.|++..-..
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 21 13356666654 676664 34578999999 999999999865443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.7e-06 Score=71.10 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=91.4
Q ss_pred hHHHHHhhCCCCCccc---------cccCCCCCCHHHHHHHHHHHHHHHcCCC-CCCEEEEEcCCc--chHHHHHHHH-C
Q 022864 19 TSFFKLVLGKYFKYSC---------CYFSDASKTLEDAEKAMLELYCERSRLE-DGHTVLDVGCGW--GSLSLYIAQK-Y 85 (291)
Q Consensus 19 ~~~~~~~~~~~~~y~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~--G~~~~~la~~-~ 85 (291)
...|..+++..-+|.. ..+. ....+....+..+...++.+... .-...||||||- -.....+++. .
T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P-~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~ 93 (267)
T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAAP-EIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA 93 (267)
T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHST-THHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC
Confidence 6778888887766632 1111 01223333444555555554444 557999999993 3456666654 6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C--CCc-----cEEEEcccccccc---cHHHHH
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E--ASY-----DRIYSIEMFEHMK---NYQNLL 150 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~-----D~i~~~~~l~~~~---~~~~~l 150 (291)
|.++|+-||.+|-.+..++.......-....++++|+.+... . +-+ =.+++..++|+++ +...++
T Consensus 94 P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv 173 (267)
T PF04672_consen 94 PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIV 173 (267)
T ss_dssp TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHH
T ss_pred CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHH
Confidence 899999999999999998887765532238899999988420 0 223 3677888999983 588999
Q ss_pred HHHHhccccCeeEEEEeeccCCc
Q 022864 151 KKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 151 ~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
+.+++.|.||.+|+++..+....
T Consensus 174 ~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 174 ARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp HHHHCCS-TT-EEEEEEEB-TTS
T ss_pred HHHHHhCCCCceEEEEecCCCCC
Confidence 99999999999999988876543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.2e-06 Score=67.92 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=77.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCcc
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYD 132 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D 132 (291)
.+.+.++.+||-+|..+|....+++.-. +...|++|+.|+.........++++ +|+-.+..|+.....- +..|
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EE
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhccccccc
Confidence 3467899999999999999998888764 4679999999999887777666655 3899899999874311 6899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+|++.-+ +-.+.+-++.++...||+||.+++..-
T Consensus 146 vI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 146 VIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 9998633 223445577788899999999988654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-06 Score=70.62 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---h----------------------------
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---L---------------------------- 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~---------------------------- 110 (291)
....+||--|||.|.++..++.+ |..+.|.|.|--|+-...-.... .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34689999999999999999988 88999999999986554332211 0
Q ss_pred ---------CCCCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 111 ---------ELQNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 111 ---------~~~~v~~~~~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...++....+|+.+...+ ++||+|+....+...++.-..++.+.++|||||+.+=
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEe
Confidence 012466677777775433 5899999998888888999999999999999996543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.5e-06 Score=63.73 Aligned_cols=104 Identities=22% Similarity=0.344 Sum_probs=73.7
Q ss_pred EEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccCC--CccEEEEccccc
Q 022864 67 VLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEA--SYDRIYSIEMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~--~~D~i~~~~~l~ 141 (291)
++|+|||+|... .+....+. ..++++|+++.++..+.......+...+.+...|... .+... .||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 44433222 4899999999999885544333211116788888776 44443 799994444444
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+.. ....+..+.+.|+|+|.+++.......
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 788999999999999999988776543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.3e-06 Score=69.66 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=67.1
Q ss_pred CCEEEEEcCCcchHHHHHH-HH-CCCCEEEEEcCCHHHHHHHHHHHH-HhCC-CCeEEEEccccCCccC-CCccEEEEcc
Q 022864 64 GHTVLDVGCGWGSLSLYIA-QK-YSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la-~~-~~~~~v~~vD~s~~~~~~a~~~~~-~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
+.+|+=||||.=.++..+. ++ .++..|+++|++++.++.+++.++ ..++ .++.|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999877655544 33 356789999999999999998877 3444 4799999999887655 7899998765
Q ss_pred ccc-ccccHHHHHHHHHhccccCeeEEEE
Q 022864 139 MFE-HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~-~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
... .-.+..+++.++.+.++||+.+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 443 2247889999999999999998885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=71.53 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=74.5
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------C--C-CCeEEEEcc
Q 022864 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------E--L-QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~v~~~~~d 121 (291)
+.+++.++++++. +|||+-+|+|..+..++.. |++|+++|-++......+++.... + + .+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 5667777888877 9999999999999999988 889999999999999988887763 2 2 468899999
Q ss_pred ccCCccC--CCccEEEEccccccc
Q 022864 122 ISTFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~~--~~~D~i~~~~~l~~~ 143 (291)
..++... ..||+|++..++.+-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCC
Confidence 8886432 579999999998765
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=67.21 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=53.7
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
+++|+|||.|..+..+++.++..+|+++|+++.+.+.++++++.++++++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999999887789999999999999999999988877788888877764
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-06 Score=73.58 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=71.7
Q ss_pred HHHHHHHHcC--------CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022864 51 MLELYCERSR--------LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 51 ~~~~~~~~~~--------~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 122 (291)
++.+++.... ..+++++|||||++|+++..+.++ +.+|++||..+- ...... .++|.....|.
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~~--~~~V~h~~~d~ 261 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLMD--TGQVEHLRADG 261 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhhC--CCCEEEEeccC
Confidence 4555555443 358999999999999999999988 779999996542 122222 24799999988
Q ss_pred cCCcc-CCCccEEEEcccccccccHHHHHHHHHhccccC
Q 022864 123 STFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 123 ~~~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg 160 (291)
..+.+ .+++|.++|..+- .+.++.+-+.++|..|
T Consensus 262 fr~~p~~~~vDwvVcDmve----~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMVE----KPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEeccc----CHHHHHHHHHHHHhcC
Confidence 88765 4889999997554 5667777777777665
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.1e-06 Score=66.65 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 49 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
..++.++.++..+ .++.+|+|||+-+|+++..++++. ++..|+++|+.|- ...++|.++++|+....
T Consensus 30 a~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~ 98 (205)
T COG0293 30 AYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDED 98 (205)
T ss_pred HHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCcc
Confidence 3455666666543 678999999999999999999885 2345999999774 12347999999998853
Q ss_pred --------cC-CCccEEEEcccc--------ccc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 --------ME-ASYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 --------~~-~~~D~i~~~~~l--------~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. .++|+|+|...- .|. .-...+++-+...|+|||.+++..+-
T Consensus 99 ~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 99 TLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 12 457999986533 222 11234667778899999999987763
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.3e-07 Score=74.09 Aligned_cols=101 Identities=12% Similarity=0.188 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-----CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-----ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-----~~~D~i~~ 136 (291)
....|+|.-||.|+.++..+.+ +..|+++|++|.-+..|+.|++..|+ ++|+|+++|+.++... ..+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4568999999999999999988 66999999999999999999999999 5899999999986432 34668877
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+.....-.-...-+-.+...++|.|.-++
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~~~~f 200 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMGTKIF 200 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhHHHHH
Confidence 77665555455556667777777765433
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-06 Score=69.39 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=68.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~~~ 139 (291)
..++|||||=+......- .+-..|+.||+++. .-.+.+.|+.+.+.+ ++||+|+++.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 479999999755543332 22457999999874 223567787776543 78999999999
Q ss_pred ccccccHH---HHHHHHHhccccCee-----EEEEeeccC
Q 022864 140 FEHMKNYQ---NLLKKISKWMKEDTL-----LFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~---~~l~~~~~~LkpgG~-----l~~~~~~~~ 171 (291)
+.+++++. +.+.++.+.|+|+|. |++..|.+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 99998764 589999999999999 888877654
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.1e-07 Score=70.05 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---CCCCeEEEEccccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---ELQNVEIIVADIST 124 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~ 124 (291)
+...-.+++....-.+.+||++|.| +|..+..+|...|...|...|-+.+.++..++....+ ++.++....-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 4444455555555568899999999 5666677777778889999999999888776654433 22334333333332
Q ss_pred Cc--cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 125 FE--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~--~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. .. ..||.|+|...+..-+....+++.+...|+|.|..++..|-
T Consensus 95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc
Confidence 21 11 58999999998755566678899999999999997776653
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=69.68 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHH--Hh--C-C--CCeEEEEccccCCccC--CCc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCR--VL--E-L--QNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~--~~--~-~--~~v~~~~~d~~~~~~~--~~~ 131 (291)
+...+||-+|.|.|..++.+. ++| -.+++-||++|+|++.++.+.. +. + . ++++++..|+.++... ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 456799999999999999998 567 4699999999999999985432 21 1 1 5799999999997654 789
Q ss_pred cEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|.|+....=..-+ -..++...+++.|+++|.++++.-..
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9999864322211 12567888999999999999976543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=72.57 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
..+..++|+|||.|.... ..|.+.+.|.|++...+..+++ . +. ....+|+...+.. .+||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~----~---~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR----S---GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc----C---CCceeehhhhhcCCCCCCccccchhhhh
Confidence 348899999999997654 2377899999998886655543 1 33 5778999998877 89999999999
Q ss_pred ccccc---cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 140 FEHMK---NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+||+. ....+++++.+.|+|||..++......
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 99994 346799999999999999888766553
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-06 Score=64.58 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=44.7
Q ss_pred EEEcCCcchHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEcccc
Q 022864 68 LDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEMF 140 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-~~~D~i~~~~~l 140 (291)
||+|+..|..+..+++..+. .+++++|..+. .+...+..++.++ ++++++.++..+.. .. +++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999888875432 37999999985 2234444444455 47999999987752 22 78999998753
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEe
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|..+.....++.+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223455678889999999999998864
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-06 Score=69.41 Aligned_cols=145 Identities=16% Similarity=0.217 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-ccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~i~~~~~l~ 141 (291)
.+.++||+|+|.|..+..++..+ .+|++.++|..|+...++ .+. || ....++ ..+-++|+|.|.+.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y-nV----l~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY-NV----LTEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC-ce----eeehhhhhcCceeehHHHHHHHH
Confidence 45799999999999999998764 479999999998766543 333 21 111122 1225799999999998
Q ss_pred ccccHHHHHHHHHhcccc-CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCC
Q 022864 142 HMKNYQNLLKKISKWMKE-DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGK 220 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
..-++-++++.+..+|+| +|.++++-..+-. + +.+ .-++|.....+. ...+.|.
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrvivaLVLP~~-h--YVE----------~N~~g~~~rPdn------------~Le~~Gr 235 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVALVLPYM-H--YVE----------TNTSGLPLRPDN------------LLENNGR 235 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEEEEeccc-c--eee----------cCCCCCcCCchH------------HHHhcCc
Confidence 888889999999999999 8988776542211 1 100 012221111111 1123456
Q ss_pred cHHHHHHHHHHHHHhcHHhHhhh
Q 022864 221 HYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 221 ~y~~tl~~w~~~l~~~~~~~~~~ 243 (291)
.|.....+..+.|...|+.+++.
T Consensus 236 ~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 236 SFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred cHHHHHHHHHHHHHhcCchhhhh
Confidence 67777777788888888877654
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=69.24 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 127 (291)
.+++++++.+...++..++|.-||.|+.+..+++..+..+|+|+|.++.+++.++++....+ +++.++++++.++..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHL 85 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHH
Confidence 46788888888888899999999999999999988766899999999999999998876543 479999999887531
Q ss_pred ---C-CCccEEEEcccc
Q 022864 128 ---E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ---~-~~~D~i~~~~~l 140 (291)
. .++|.|++..-.
T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305)
T ss_pred HhcCCCcccEEEEeccC
Confidence 1 468988886533
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=69.27 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=48.8
Q ss_pred CCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEEcccc----CCc-cC-CCccEE
Q 022864 64 GHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIVADIS----TFE-ME-ASYDRI 134 (291)
Q Consensus 64 ~~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~v~~~~~d~~----~~~-~~-~~~D~i 134 (291)
..++||||||... +.+..++.+ +.+++|.|+++..++.|++++..+ ++ ++|.++...-. ... .+ +.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5689999999764 455555555 899999999999999999999998 77 47888765322 211 11 689999
Q ss_pred EEccccccc
Q 022864 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+|+.+|+.-
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999999865
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.2e-05 Score=62.03 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=82.3
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i 134 (291)
+++.++.+||-+|..+|....+++.-.+...+++|+.|+.........+.+. +|+-.+..|+.....- +..|+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEE
Confidence 4678999999999999999999988766678999999999988887777665 3788899998875321 678998
Q ss_pred EEcccccccccHH-HHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..-+= ++.. -+..++...||+||.+++..-
T Consensus 150 y~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 150 YQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred EEecCC---chHHHHHHHHHHHhcccCCeEEEEEE
Confidence 875221 3333 367778999999998777554
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-05 Score=63.95 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC
Q 022864 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~ 128 (291)
++...++...+ .++..+||+|+.||+++..+.++. ..+|+++|....++.+-.++ . ++ +.+...|+..+.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHH
Confidence 34455555444 478999999999999999999884 56899999999877654432 1 24 44556677765433
Q ss_pred ---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 129 ---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 129 ---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+..|+|+|.-+|. .+..++..+..+++|++-++.
T Consensus 140 ~~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE
Confidence 6789999988885 557889999999999998765
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.4e-05 Score=67.21 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i 134 (291)
+..+++.||||.++-+|+-+.++|..- ....|++.|.+.+-+...+.++...|+.+......|..+++.. .+||.|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 456799999999999999888887653 2458999999999999999999999998888888898876522 579999
Q ss_pred EEcccccc--c--------------------ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEH--M--------------------KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~--~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
....+... + .-.+++|....+++++||+|+-++.+..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 97665433 1 1146788899999999999999887653
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.4e-05 Score=61.81 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 126 (291)
..++.+.+.+. .+|.+||++|-|-|.....+.+.- ..+=+.++..|..++.++ ..|. +||....+-+++..
T Consensus 89 piMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~-p~~H~IiE~hp~V~krmr----~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 89 PIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAP-PDEHWIIEAHPDVLKRMR----DWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred HHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcC-CcceEEEecCHHHHHHHH----hcccccccceEEEecchHhhh
Confidence 33444444333 668899999999999988887664 455667899999765554 4444 47888888888754
Q ss_pred cC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 127 ME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 127 ~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.. +.||-|+-..--++.++...+.+.+.++|||+|++-+
T Consensus 163 ~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 32 7799999876657778899999999999999998754
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.5e-05 Score=62.22 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=69.9
Q ss_pred EEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022864 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~ 144 (291)
|.||||--|.+..+|.+.....+++++|+++..++.|+++....++ +++++..+|-.+.-.+ +..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 6899999999999999986445899999999999999999999998 5799999996654333 44799888765431
Q ss_pred cHHHHHHHHHhccccCeeEEEEee
Q 022864 145 NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
....++++....++....|+++..
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHHhhHHHhccCCeEEEeCC
Confidence 235566666666666566666543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00024 Score=59.05 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~ 136 (291)
+.-.|++||-+|=.-- .|+.++-..+..+|+.+|+++..++..++.+++.|+ +++.+..|+.+.-++ ++||+++.
T Consensus 41 gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE
T ss_pred CcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEe
Confidence 4446889999995543 344444445578999999999999999999999999 499999999985333 89999999
Q ss_pred cccccccccHHHHHHHHHhccccCe-eEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDT-LLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG-~l~~ 165 (291)
..+. .++....++.+....||..| ..++
T Consensus 119 DPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 119 DPPY-TPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ---S-SHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred CCCC-CHHHHHHHHHHHHHHhCCCCceEEE
Confidence 8765 45677889999999999766 4444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-05 Score=63.14 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------CCCeEEEEccccCCccC----CCc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------LQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~----~~~ 131 (291)
..-.+.|||||-|++...|+..+|..-+.|.++--..-++.++++...+ ++|+.+...+...+.+. ++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4568999999999999999999999999999999998888888876654 45677777777665432 333
Q ss_pred cEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+-++....-.|+.. ...++.+..=+|++||.++..+-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 33333333333311 23477788889999999887553
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00015 Score=62.06 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.+++++++.+...++...+|.--|.|+.+..+.+++|. .+++|+|-++.+++.|++.....+ +++.+++.++.++...
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA 88 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH
Confidence 46788888899999999999999999999999999864 569999999999999999887755 3889999887765311
Q ss_pred ------CCccEEEE
Q 022864 129 ------ASYDRIYS 136 (291)
Q Consensus 129 ------~~~D~i~~ 136 (291)
.++|-|+.
T Consensus 89 l~~~~i~~vDGiL~ 102 (314)
T COG0275 89 LKELGIGKVDGILL 102 (314)
T ss_pred HHhcCCCceeEEEE
Confidence 46666665
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-05 Score=63.55 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
++..+|+|||||.-.++.......++..++|+|++..+++.........+. +.++...|...-+++...|+.+..=+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 457899999999999998888777788999999999999999998888876 6788888988876668899999987776
Q ss_pred cccc
Q 022864 142 HMKN 145 (291)
Q Consensus 142 ~~~~ 145 (291)
.++.
T Consensus 183 ~le~ 186 (251)
T PF07091_consen 183 CLER 186 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.2e-05 Score=60.98 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHH------HHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQK------EFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~------~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
+++...+++++.+|+|+=.|.|.+++.++... |...|+++-..+... ......+++....|+..+..+...+.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 45556678999999999999999999998764 445777765443311 11122222233346666666666665
Q ss_pred cCCCccEEEEccccccc-------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 MEASYDRIYSIEMFEHM-------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++..|+++.....|.+ ....++...+.+.|||||++++.+-
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 55778888875555443 2356789999999999999988653
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=56.68 Aligned_cols=99 Identities=19% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCc---------cCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE---------MEA 129 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~---------~~~ 129 (291)
+.|+.+|||+||.+|.++....++. |...|.|||+-.- ..++.+.++++ |+.+.. +..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 3689999999999999999988875 8889999998432 12234566666 776642 226
Q ss_pred CccEEEEccccccc----ccHH-------HHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHM----KNYQ-------NLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~----~~~~-------~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+.|+|+|...-..- .|.. .++.-....++|+|.++.-.+..
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 89999986532211 2333 34444566788999999877644
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=66.55 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=97.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHH
Q 022864 35 CYFSDASKTLEDAEKAMLELYCERSRLED---GHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~ 107 (291)
..|+.+....++.+++.+..+.++..... ...|+-+|+|-|.+.....+. ....++++|+.+|+++-..+. .
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~ 414 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-R 414 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-h
Confidence 56777777888888999998888864432 457789999999876554432 235789999999998877665 3
Q ss_pred HHhCC-CCeEEEEccccCCccC-CCccEEEEc--ccccccccHHHHHHHHHhccccCeeEEE
Q 022864 108 RVLEL-QNVEIIVADISTFEME-ASYDRIYSI--EMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 108 ~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~--~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
..... ++|+++..|+.++..+ ++.|++|+- ++|..-+-.++.|..+.+.|||+|+.+=
T Consensus 415 n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 415 NFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 22233 4799999999999887 899998873 3444334467899999999999987653
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00025 Score=54.18 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--C-CccEEEEcccccccc-----------cHHHHHHHH
Q 022864 89 KITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--A-SYDRIYSIEMFEHMK-----------NYQNLLKKI 153 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~--~-~~D~i~~~~~l~~~~-----------~~~~~l~~~ 153 (291)
+|+|+|+.+++++.++++.++.++ ++++++..+=+.+... . ++|+++.|. .+++ ..-..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999888 4799999877776533 3 799998874 3332 245688899
Q ss_pred HhccccCeeEEEEee
Q 022864 154 SKWMKEDTLLFVHHF 168 (291)
Q Consensus 154 ~~~LkpgG~l~~~~~ 168 (291)
.+.|+|||.+.+...
T Consensus 79 l~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLKPGGIITIVVY 93 (140)
T ss_dssp HHHEEEEEEEEEEE-
T ss_pred HHhhccCCEEEEEEe
Confidence 999999999887654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00079 Score=62.91 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=100.4
Q ss_pred hhcCCChHHHHHhhCCC---CCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC---
Q 022864 13 QHYELPTSFFKLVLGKY---FKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS--- 86 (291)
Q Consensus 13 ~~yd~~~~~~~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--- 86 (291)
...|.-.+.|+.++... ..-..|-|-.+ ......+++.+...+..+|+|..||+|++.....+...
T Consensus 141 ~~~d~~G~~yE~ll~~fa~~~~k~~GEfyTP--------~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~ 212 (489)
T COG0286 141 LDRDLFGDAYEYLLRKFAEAEGKEAGEFYTP--------REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ 212 (489)
T ss_pred ccccchhHHHHHHHHHHHHhcCCCCCccCCh--------HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc
Confidence 34567788888877532 11111222212 23344455555556777999999999998877766541
Q ss_pred -CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-----C-CCccEEEEcccccc---cc-----------
Q 022864 87 -NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----E-ASYDRIYSIEMFEH---MK----------- 144 (291)
Q Consensus 87 -~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----~-~~~D~i~~~~~l~~---~~----------- 144 (291)
...++|.|+++.....++-++--+|++ ++....+|...-+. . ..||+|+++.++.. ..
T Consensus 213 ~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~ 292 (489)
T COG0286 213 DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERF 292 (489)
T ss_pred cceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccc
Confidence 267999999999999999998888875 34555565544321 2 67999999998740 00
Q ss_pred -----------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 145 -----------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 145 -----------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
....+++.+...|+|||+..+..+..
T Consensus 293 ~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 293 FFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred cccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 12568999999999999776665544
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00031 Score=61.05 Aligned_cols=112 Identities=10% Similarity=0.083 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----CccCCCccEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FEMEASYDRI 134 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~D~i 134 (291)
..-...+|||+|.|.|.-...+-..+|.. .++.++.|+..-+...............+...|+.. ++....|++|
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehh
Confidence 33456789999999999887777777764 678888998876666555544333233333333332 3222556666
Q ss_pred EEcccccccc---cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEHMK---NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+...-+-+.. .....++.+...+.|||.+++...+.+
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 6655444442 234478999999999999999887753
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00077 Score=51.42 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
.+.++.++..+...+..+.+|+|+|.|......++.. -...+|+++++-.+.+++-.+-..|+ ++..|..-|+-+...
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 4455666777777777799999999999988888763 35789999999999999887777777 468888888888665
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. .|..|+...+=.-+ ..+-.++..-+..|..++..-+
T Consensus 137 ~-dy~~vviFgaes~m---~dLe~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 137 R-DYRNVVIFGAESVM---PDLEDKLRTELPANTRVVACRF 173 (199)
T ss_pred c-ccceEEEeehHHHH---hhhHHHHHhhCcCCCeEEEEec
Confidence 3 33434433322222 3344556666777887766544
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00075 Score=56.76 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CCeEEEEccccCCccC----CC-c
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEME----AS-Y 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~----~~-~ 131 (291)
...+||++|+|+|-.+..++... +.+|...|+ +..++..+.+...+.. ..+.+...++...... .. +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45689999999998888777654 889999987 4444444444322221 1455555555543211 44 8
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
|+|++..++..-.....++..+...|..+|.+++...-+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999998888888889999999999997777766544
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00051 Score=57.22 Aligned_cols=89 Identities=22% Similarity=0.389 Sum_probs=54.4
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---HHHhCC------CCeEEEEcc
Q 022864 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---CRVLEL------QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~------~~v~~~~~d 121 (291)
+.+++.++++++. +|||.-+|.|.-+..++.. |++|+++|-||-.....+.- +..... .+++++.+|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 4566667777664 9999999999999999976 88999999999876555532 222111 378999999
Q ss_pred ccCCcc--CCCccEEEEccccccc
Q 022864 122 ISTFEM--EASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~--~~~~D~i~~~~~l~~~ 143 (291)
..++.. ..+||+|++..+|.+-
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S----
T ss_pred HHHHHhhcCCCCCEEEECCCCCCc
Confidence 988532 2789999999999764
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0023 Score=52.10 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHHHHHHHH----cCCCCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHH-------------
Q 022864 49 KAMLELYCER----SRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRV------------- 109 (291)
Q Consensus 49 ~~~~~~~~~~----~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~------------- 109 (291)
.+...+++++ +....+.++.|-+||.|.+.-.+.-.++. ..|++.|+++++++.|++|..-
T Consensus 33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL 112 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREEL 112 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHH
Confidence 3444444443 34456789999999999988777655433 4899999999999999886511
Q ss_pred ----------------------------h-CCCCeEEEEccccCCc------cCCCccEEEEccccccccc---------
Q 022864 110 ----------------------------L-ELQNVEIIVADISTFE------MEASYDRIYSIEMFEHMKN--------- 145 (291)
Q Consensus 110 ----------------------------~-~~~~v~~~~~d~~~~~------~~~~~D~i~~~~~l~~~~~--------- 145 (291)
. +.......+.|+++.. .....|+|+..-+...+.+
T Consensus 113 ~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p 192 (246)
T PF11599_consen 113 RELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGP 192 (246)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCc
Confidence 0 1224678888888842 2234699999887765522
Q ss_pred HHHHHHHHHhccccCeeEEEEe
Q 022864 146 YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 146 ~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...+++.+..+|.+++++.+++
T Consensus 193 ~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 193 VAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEec
Confidence 4679999999996677776643
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=60.43 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=82.4
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~ 143 (291)
.++|-+|||.-.++..+.+.. ...|+.+|+|+-.++.+...-. ...+-..+...|+..+.++ ++||+|+..+.++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 499999999999988887653 4689999999999888776543 2223588999999998888 999999999988877
Q ss_pred -cc---------HHHHHHHHHhccccCeeEEEEeec
Q 022864 144 -KN---------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 144 -~~---------~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+ ....+..+.++|+|||+.+..+..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 11 234678899999999998776663
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00018 Score=62.44 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 127 (291)
++.++++.+...++..++|.--|.|+.+..+.++.|+.+++|+|.++.+++.++++..... +++.++++++.++..
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHH
Confidence 5678888888888999999999999999999999888999999999999888876654332 478888888877531
Q ss_pred ---C-CCccEEEEcc
Q 022864 128 ---E-ASYDRIYSIE 138 (291)
Q Consensus 128 ---~-~~~D~i~~~~ 138 (291)
. .++|.|+...
T Consensus 87 ~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 87 ELNGINKVDGILFDL 101 (310)
T ss_dssp HTTTTS-EEEEEEE-
T ss_pred HccCCCccCEEEEcc
Confidence 1 3677776644
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0002 Score=60.86 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=98.3
Q ss_pred cCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEE
Q 022864 15 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 91 (291)
Q Consensus 15 yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~ 91 (291)
+|...++.....-+++.|..-+-..+-..+.+..+-...+++..+ .+...++||-||.|-|...+..+++-.-.++.
T Consensus 70 ~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~ 149 (337)
T KOG1562|consen 70 HDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENIL 149 (337)
T ss_pred ccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeecccccccee
Confidence 344455555544555555432222222222222222223333222 34567899999999999999988763234789
Q ss_pred EEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCcc---CCCccEEEEcccccccc----cHHHHHHHHHhccccC
Q 022864 92 GICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEM---EASYDRIYSIEMFEHMK----NYQNLLKKISKWMKED 160 (291)
Q Consensus 92 ~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~---~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~Lkpg 160 (291)
.+|++...++..++..... |. +++....+|-..+.. .++||+|+....=.-.+ -.+.++..+.+.||+|
T Consensus 150 ~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 150 LCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred eehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999998877653 33 479999998877532 27899998743221111 2356888999999999
Q ss_pred eeEEEEe
Q 022864 161 TLLFVHH 167 (291)
Q Consensus 161 G~l~~~~ 167 (291)
|+++.+.
T Consensus 230 gv~~~q~ 236 (337)
T KOG1562|consen 230 GVVCTQG 236 (337)
T ss_pred cEEEEec
Confidence 9998865
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0033 Score=51.50 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.+.++.||||--+.+..+|.+.++...++++|+++..++.|.+++++.++ ++++...+|-...-.. ..+|+|+..++=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 45669999999999999999998888999999999999999999999988 6789999988553322 578999887654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.. -...++++-...|+.--.++++
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEEC
Confidence 32 2355666666666654455554
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=55.89 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH---HHhC-----------------------C----
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-----------------------L---- 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~-----------------------~---- 112 (291)
...+||--|||.|.++..|+.. |..+-|-+.|--|+-...-.. +..+ +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3579999999999999999988 556777788877764433221 1000 0
Q ss_pred ----------CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 113 ----------QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 ----------~~v~~~~~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+...-.||+.+.-.. +.||+|+.+..+....+.-..++.+..+|||||+.+=..
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecc
Confidence 0111223555543222 469999999888777888999999999999999876533
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=59.06 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc--cCCCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE--MEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~--~~~~~D~i~~~ 137 (291)
.+.+|||.=+|+|.=++..+...++ .+|+..|+|++.++.+++|++.++++ ++.+.+.|+..+. ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4579999999999999988888433 58999999999999999999999984 4889899998865 34889988654
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
-+..+..+++.+.+.++.||.|.++...
T Consensus 129 ----PfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 ----PFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred ----CCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 2345678999999999999999996554
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=53.91 Aligned_cols=112 Identities=11% Similarity=0.117 Sum_probs=59.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 126 (291)
+++++-.+ ++..|+|+|.-.|+.+..+|.. . +..+|+|+|++..... ++..+.... ++|+++++|..+..
T Consensus 24 ~qeli~~~---kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 24 YQELIWEL---KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp HHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTH
T ss_pred HHHHHHHh---CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHH
Confidence 34444433 3569999999999988877653 2 5689999999644321 111222222 58999999988753
Q ss_pred cC-------CCcc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 ME-------ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~-------~~~D-~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.- ...+ ++++..+-|...+.-+.|+.....+++|+++++.+.
T Consensus 99 ~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp HHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 11 1123 233334444446677888889999999999998654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0049 Score=54.31 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=80.3
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCC----CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSN----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 127 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 127 (291)
++++|+.+|||+++-+|+-+..+.+..-. ..|++-|.++.-+.......+....+++.+...|+..++.
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 46789999999999999999888776322 2799999999988887777644433455555555544321
Q ss_pred --C-CCccEEEEcccc------ccccc-----------------HHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 128 --E-ASYDRIYSIEMF------EHMKN-----------------YQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 128 --~-~~~D~i~~~~~l------~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
. ..||-|+|.-+. ....+ ...++.+..++||+||.++-++.+...
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 1 579999884322 11111 245888999999999999998876543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.18 Score=44.95 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=66.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH--------C--------CCCEEEEEcCCHHHHHHHHHHHHHh-----C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK--------Y--------SNCKITGICNSKTQKEFIEEQCRVL-----E 111 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------~--------~~~~v~~vD~s~~~~~~a~~~~~~~-----~ 111 (291)
..+......+...+|.|+||..|..+..+... + |..+|+.-|+-.+-....-+..... .
T Consensus 6 ~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~ 85 (334)
T PF03492_consen 6 KELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK 85 (334)
T ss_dssp HHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH
T ss_pred HHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC
Confidence 34443334566789999999999998877542 1 1258888886554333322222111 0
Q ss_pred CCC--eEEEEccccCCccC-CCccEEEEccccccccc---------------------------------------HHHH
Q 022864 112 LQN--VEIIVADISTFEME-ASYDRIYSIEMFEHMKN---------------------------------------YQNL 149 (291)
Q Consensus 112 ~~~--v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~---------------------------------------~~~~ 149 (291)
..+ +.-+.+.+..-.++ ++.|+++|..++||+.. +..+
T Consensus 86 ~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~F 165 (334)
T PF03492_consen 86 FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSF 165 (334)
T ss_dssp TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 112 33445666654444 89999999999988721 1123
Q ss_pred HHHHHhccccCeeEEEEeeccCC
Q 022864 150 LKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 150 l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
|+.=.+-|+|||++++..++.+.
T Consensus 166 L~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 166 LKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHhhheeccCcEEEEEEeeccc
Confidence 33334567899999999998876
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0037 Score=55.10 Aligned_cols=102 Identities=22% Similarity=0.153 Sum_probs=81.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~ 141 (291)
..+|||.=||+|.=++..+...+..+|+.-|+||+.++.+++|++.+...+...+..|+..+... ..||+|=.. ++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD-PF- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID-PF- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC-CC-
Confidence 67999999999999999998875669999999999999999999988444566666888776544 778876443 33
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
..+..+++...+.++.||.|.+.-..
T Consensus 131 --GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 131 --GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred --CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 45667888888889999999885443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0022 Score=53.03 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=74.8
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~ 131 (291)
+.+.++|+.+||-||+++|......... .|..-|++|+.|...=......+++. +||..+.-|+.....- .-.
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeE
Confidence 4456789999999999999987777654 36678999999887654444433333 3777777887764211 456
Q ss_pred cEEEEcccccccccHHH-HHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMKNYQN-LLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~-~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|++.-+- ++... +.-+....||+||-++++.-..
T Consensus 228 DvIFaDvaq---pdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 228 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred EEEeccCCC---chhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 777764221 33333 4556788999999998876544
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0062 Score=53.67 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=67.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~ 133 (291)
.+....|+.+|+=+|+| .|..+..+++.. +++|+++|.|++-.+.|++ .|.+ .++...-.+.... +.+|+
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~----lGAd--~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKK----LGAD--HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHH----hCCc--EEEEcCCchhhHHhHhhCcE
Confidence 34567899999999987 557888888765 7999999999997666655 3432 2333221111111 34899
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+..-+ ...+....+.|++||.+++.-.
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence 887533 4567778889999999888544
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=52.18 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=65.8
Q ss_pred CCEEEEEcCCcchHHHHHHHH---------------CCCCEEEEEcCCHHHHHHHHHHHHH--------------hCCCC
Q 022864 64 GHTVLDVGCGWGSLSLYIAQK---------------YSNCKITGICNSKTQKEFIEEQCRV--------------LELQN 114 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~---------------~~~~~v~~vD~s~~~~~~a~~~~~~--------------~~~~~ 114 (291)
..+|+|+|||+|..+..+... -|..+|..-|+..+-....-+.... .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 669999999999887665331 1346788888654433332222211 01001
Q ss_pred --eEEEEccccCCccC-CCccEEEEccccccccc--------------------------------------HHHHHHHH
Q 022864 115 --VEIIVADISTFEME-ASYDRIYSIEMFEHMKN--------------------------------------YQNLLKKI 153 (291)
Q Consensus 115 --v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~ 153 (291)
+.-+.+.+-.-.++ ++.++++|..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222344333344 88999999999998842 11233333
Q ss_pred HhccccCeeEEEEeeccCC
Q 022864 154 SKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 154 ~~~LkpgG~l~~~~~~~~~ 172 (291)
.+-|.|||.+++...+++.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHhccCcEEEEEEecCCC
Confidence 4568899999999998864
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0049 Score=45.88 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~ 136 (291)
.+.+|+|||.+.|..+++++-+. ...|+++++++...+..+++++...+ ++.. ... +++.. ++||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccccCCCcceEEE
Confidence 47899999999999999999774 56899999999999999888776543 2111 111 23323 67887765
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0021 Score=55.88 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=81.8
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHH-------HHHHHHHHhCC-C-CeEEEEccccCCccC-
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE-------FIEEQCRVLEL-Q-NVEIIVADISTFEME- 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~~-~-~v~~~~~d~~~~~~~- 128 (291)
....+|.-|+|---|||++....+.- |+.|.|.|++-.++. ..+.|+++.|. + -+.+..+|....+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 34679999999999999998888754 899999999998877 34567777775 2 377888898886544
Q ss_pred -CCccEEEEccccc------------------------cccc---------HHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFE------------------------HMKN---------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~------------------------~~~~---------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..||.|+|..+.. |.+. ...++.-..+.|.-||++++-.|
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 6899999987652 1110 23466667788999999888555
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00039 Score=53.49 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=40.1
Q ss_pred CccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 125 FEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 125 ~~~~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
..+. .+.|+|.+.++++|+ ..-..+++.+.+.|||||+|-++.|....
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 3344 889999999999999 45567899999999999999998886544
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.011 Score=56.11 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=67.1
Q ss_pred CEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHH-hCC--------CCeEEEEccccCCccC---
Q 022864 65 HTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRV-LEL--------QNVEIIVADISTFEME--- 128 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~--------~~v~~~~~d~~~~~~~--- 128 (291)
..|+-+|+|-|.+.....+. . -..+|++||.++........+... ... .+|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999875554432 1 246899999996654444333211 122 2489999999998532
Q ss_pred ---------CCccEEEE--cccccccccHHHHHHHHHhcccc----Cee
Q 022864 129 ---------ASYDRIYS--IEMFEHMKNYQNLLKKISKWMKE----DTL 162 (291)
Q Consensus 129 ---------~~~D~i~~--~~~l~~~~~~~~~l~~~~~~Lkp----gG~ 162 (291)
+++|+||| .++|..-+-.++.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37999998 55665555567888888888887 776
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=54.80 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=66.0
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----------Cc--
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----------FE-- 126 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----------~~-- 126 (291)
..++.+|+=+|||. |..+...++.. |++|+++|.+++..+.+++ .|. ++...|..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA---~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGA---EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEEeccccccccccchhhhcchh
Confidence 35789999999995 66777777766 7899999999997665554 343 222111111 00
Q ss_pred ---------cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 ---------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ---------~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+ ..+|+|+.......-+.+..+.+.+.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 3589998875543322333345999999999999776544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0018 Score=59.28 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~ 139 (291)
..-.+|+|...|.|+++..|.+. .+ .....-+..-......+-+.|+ |- +..|+.+ ++ .+..||+|.+..+
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~--~V--WVMNVVP~~~~ntL~vIydRGL--IG-~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD--PV--WVMNVVPVSGPNTLPVIYDRGL--IG-VYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred cceeeeeeecccccHHHHHhccC--Cc--eEEEecccCCCCcchhhhhccc--ch-hccchhhccCCCCcchhheehhhh
Confidence 44579999999999999999864 33 2222222111111223334444 22 2234433 33 2389999999998
Q ss_pred ccccc---cHHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHMK---NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|.... +...++-++-|+|+|+|.++|.+
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 87763 46778999999999999999854
|
; GO: 0008168 methyltransferase activity |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0088 Score=51.85 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=74.6
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--ccCC---c---
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTF---E--- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~---~--- 126 (291)
+++.+.+.+.+||=+|+|+ |..+...++.....+|+.+|+++..++.|++ .|.+.+...... ..++ .
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKA 237 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhh
Confidence 3455778999999999995 6777777777756799999999998888876 344222222111 1111 0
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
.. ..+|+.+...-+ +..++.....+++||.+++...+.+...
T Consensus 238 ~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred ccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCccc
Confidence 11 458888876444 5567777889999999888887776543
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0028 Score=53.94 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------HHHH--HhCCC-
Q 022864 47 AEKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE-------EQCR--VLELQ- 113 (291)
Q Consensus 47 ~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~-------~~~~--~~~~~- 113 (291)
.....+..+...+ -...+++|||+|||.|...+....+. .+.+...|.|...++.-. ..+. .....
T Consensus 97 cS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~ 175 (282)
T KOG2920|consen 97 CSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK 175 (282)
T ss_pred cHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhccc
Confidence 3344555555442 12468999999999999999888763 378888888887662110 0010 00000
Q ss_pred CeEEEEccccCCcc--CC--CccEEEEcccccccccHHHH-HHHHHhccccCeeEEE
Q 022864 114 NVEIIVADISTFEM--EA--SYDRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFV 165 (291)
Q Consensus 114 ~v~~~~~d~~~~~~--~~--~~D~i~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~~ 165 (291)
-......+..+... .+ .||+|.++..+......+.+ .......++++|++++
T Consensus 176 ~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 176 VDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 11222221112221 13 89999999988877766666 5566677888998776
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.006 Score=50.16 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHC----C--CC---EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY----S--NC---KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~----~--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 126 (291)
-.+++|++...|.++..|.++. + +. .+++||+.+- ..++.|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 4699999999999999998763 1 12 3999998653 24457888899998753
Q ss_pred cC-CCccEEEEccc-----cccccc------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 ME-ASYDRIYSIEM-----FEHMKN------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~-~~~D~i~~~~~-----l~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+. ++.|+|+|.+. +|.+.. +-..|.-...+|||||.++--.+-.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 23 68999999874 344422 2235555678999999998765543
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0019 Score=57.61 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTF 125 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~ 125 (291)
.++|..|.|+.||.|.++..++.+ +++|++.|++++++++.+.+++.+.++ ++..+..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 468899999999999999999988 799999999999999999999877762 478888887664
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.021 Score=50.37 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=56.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH----CC----CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YS----NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
-.+.+.++.+....++|||.|.|.++.-+.+. .| ..++..|++|++..+.-+++.+... .. +......+
T Consensus 67 ~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-~~--~~~~~~~e 143 (370)
T COG1565 67 LQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-DL--IRWVEWVE 143 (370)
T ss_pred HHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-cc--hhHHHHHH
Confidence 34445566667789999999999998877654 23 5799999999997766555554332 11 11222222
Q ss_pred CccCCC-ccEEEEcccccccc
Q 022864 125 FEMEAS-YDRIYSIEMFEHMK 144 (291)
Q Consensus 125 ~~~~~~-~D~i~~~~~l~~~~ 144 (291)
. .++. .-+|++|..+..++
T Consensus 144 ~-~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 144 D-LPKKFPGIVVSNELFDALP 163 (370)
T ss_pred h-ccccCceEEEechhhcccc
Confidence 2 2234 45677888887664
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0085 Score=53.86 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--CCccEEEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~--~~~D~i~~ 136 (291)
...|||||.|||.++...+... +-.|++++.-.-|.+.|++...++|. ++|.++.---.++... ...|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 3578999999999999888774 55799999999999999999999998 5788876555544322 33566554
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=46.54 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCcchHHHHH---HHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CCC-CeEEEEccccC-C----cc-CCCc
Q 022864 63 DGHTVLDVGCGWGSLSLYI---AQKYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADIST-F----EM-EASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l---a~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~-~v~~~~~d~~~-~----~~-~~~~ 131 (291)
++.++||||.|.- .++= ...+ +.+.+|.|+++..++.|+..+..+ ++. .++.....=.+ + .. .+.|
T Consensus 78 ~~i~~LDIGvGAn--CIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGAN--CIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcc--cccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 5678999987743 2221 1123 678999999999999999988776 443 35554432222 1 11 1789
Q ss_pred cEEEEccccccc
Q 022864 132 DRIYSIEMFEHM 143 (291)
Q Consensus 132 D~i~~~~~l~~~ 143 (291)
|++.|+.+||.-
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999999754
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.027 Score=51.13 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-cc----CCccCC
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~----~~~~~~ 129 (291)
......++.+||.+|||. |..+..+++.. +. +++++|.+++..+.+++.. +...+.....+ +. +.....
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCC
Confidence 344567889999999987 88888898886 55 6999999999877766531 22111111111 11 111113
Q ss_pred CccEEEEcccc---------------cccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMF---------------EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l---------------~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+-.-.- ....+....+..+.++|+|+|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 68988774211 111334567888999999999987753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.074 Score=45.56 Aligned_cols=121 Identities=9% Similarity=0.080 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccC
Q 022864 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADIST 124 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~ 124 (291)
..+.++..+..........|+.||||--.-...+... ++.+++=+|. |+.++.-++.+.+.+. .+..++.+|+.+
T Consensus 66 Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 66 RTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 3445566655432233457999999987776665422 2567777887 5666666666665432 468888889862
Q ss_pred -Cc-------cC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 125 -FE-------ME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 125 -~~-------~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+. +. ...-++++-+++.+++ ...++++.+.+...||+.+++.....
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 11 11 2345788888888884 56789999998888999998876543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0031 Score=45.86 Aligned_cols=38 Identities=13% Similarity=0.416 Sum_probs=30.6
Q ss_pred CccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+||+|+|..+.-++ ..+..+++++.+.|+|||.+++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999999887766 346789999999999999999853
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.024 Score=48.38 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHcCCCC-CCEEEEEcCCcchHHHHHHHHC--------CCCEEEEEcCCHHHHHHHHHHHHHhC-----C-CCeEEE
Q 022864 54 LYCERSRLED-GHTVLDVGCGWGSLSLYIAQKY--------SNCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEII 118 (291)
Q Consensus 54 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~la~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~v~~~ 118 (291)
...+.++.+. ..+|+|+|+|.|.++..+.... ...+++.||+|+.+.+.-+++..... . .++.+
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-
Confidence 3344444333 4799999999999998887653 23589999999998877776654421 1 24666
Q ss_pred EccccCCccCCCccEEEEcccccccc
Q 022864 119 VADISTFEMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 119 ~~d~~~~~~~~~~D~i~~~~~l~~~~ 144 (291)
..++.+.+ ..-+|+++.++..++
T Consensus 87 ~~~l~~~p---~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 87 LDDLEEVP---FPGFIIANELFDALP 109 (252)
T ss_dssp ESSGGCS----CCEEEEEESSGGGS-
T ss_pred hhhhhccc---CCEEEEEeeehhcCc
Confidence 34444443 457788888887775
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.024 Score=49.25 Aligned_cols=58 Identities=21% Similarity=0.084 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..++..++... ..+|..|||.-||+|..+....+. +-+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 44556666544 367899999999999999887766 78999999999999999998753
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.022 Score=47.25 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 105 (291)
..++..++... ..++..|||.-||+|+.+....+. +-+.+|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 44556666554 467889999999999999888776 7799999999999888764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.12 Score=46.33 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-ccC--CccC--CCccEE
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IST--FEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~--~~~~--~~~D~i 134 (291)
..++.+|+=+|||+ |.++..+++.....+|+++|.+++-++.|++.. +.+.+.....+ ... .... ..+|++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 34455999999995 777788888776679999999999888887633 11111111111 100 0111 368998
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+=..- ....+..+.+.++|||.+.+....
T Consensus 243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 243 IEAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 85433 345788899999999998876554
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=49.99 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=52.9
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCCccEEEEccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~~l~ 141 (291)
.+|+|+.||.|.++..+.+.. ...+.++|+++..++..+.+... ..+.+|+.++.. ...+|+++...+..
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred CcEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 379999999999998887652 33578899999988777766521 156677777643 25799999987665
Q ss_pred cc
Q 022864 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 74 ~f 75 (275)
T cd00315 74 PF 75 (275)
T ss_pred hh
Confidence 43
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.33 Score=40.77 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc--c-CCCccE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--M-EASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-~~~~D~ 133 (291)
..+..++|+|+|+..-++.|...+. ..+++.+|+|...+....+.....-.. .+.-+++|.+... + ...--+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 4478999999999988877765542 268999999999887665544332221 3556677766521 1 222222
Q ss_pred -EEEccccccc--ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 -IYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 -i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++...++..+ .+...++..+...|+||-.+++.+-..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 3334455555 345679999999999999999865443
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0035 Score=53.56 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCcchHHH-HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSL-YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~-~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.+..|+|+-+|.|.++. .+... ....|+++|.+|..++..++++..++. +++..+.+|-....+....|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG--- 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec---
Confidence 45799999999999998 55544 256899999999999999999988876 4667777887776555777877653
Q ss_pred cccccHHHHHHHHHhccccCee
Q 022864 141 EHMKNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~ 162 (291)
-++..++-...+.++|||.|-
T Consensus 270 -LlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 -LLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred -cccccccchHHHHHHhhhcCC
Confidence 224445555566777887443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.073 Score=47.40 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCcc
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~D 132 (291)
......++.+||=.||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+. +.....++.+.... +.+|
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCC
Confidence 33445578899999986 456667777665 66 79999999987766553 34321 11111122221111 3588
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+-..- ....++...+.|++||++++..
T Consensus 238 ~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 238 VSFEVSG------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 8875422 1345677888999999987754
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.049 Score=50.97 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----------------
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---------------- 124 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---------------- 124 (291)
.++.+|+=+|||. |..+..+++.. ++.|+++|.+++..+.+++ .|. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa---~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGA---EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccccceeecCHHH
Confidence 4678999999995 56666666665 7899999999996555443 333 232222211
Q ss_pred -------CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 -------FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 -------~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+... ..+|+|+..-.+..-+.+.-+.+++.+.+|||++++-
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 1111 5699998876554444444577888999999998653
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.044 Score=45.95 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
.++..++... ..++..|||.-||+|+.+....+. +-+.+|+|++++..+.+.+++...
T Consensus 151 ~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3445555443 357889999999999999887765 789999999999999998887654
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.007 Score=55.20 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-----CCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-----ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-----~~~D~i 134 (291)
.++.+|||.=|++|.-++..+...|++ +|++.|.+++.++..+++++.++.+ .+.....|+..+... ..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 456799999999999999999887765 7999999999999999999888773 467777787664321 679988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
=... ......+|+.+.+.++.||.|++....
T Consensus 188 DLDP----yGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DLDP----YGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ecCC----CCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 6542 234567888889999999999986543
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.049 Score=48.50 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH-------HHHhCC--
Q 022864 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ-------CRVLEL-- 112 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~-- 112 (291)
..+.+.+...+..+++.+.+.++....|+|+|.|.+...++....-..-.|+++....-+.+..+ .+..|-
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 45666667777888888999999999999999999988887654334566777555443333322 222232
Q ss_pred CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 113 QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ~~v~~~~~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..+..+++++.+.... ...++|+++++...- ++..-+.++..-+++|-+++-..+
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEecccc
Confidence 2477888887764321 568999998776433 334445578888899998766444
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.027 Score=43.14 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
+|+..++..++.....+| -|||+|=|.|..=..|.+.+|+.+|+++|-.-..- ...-.+.-.++.+|+.+..
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~~~P~~~~~ilGdi~~tl 84 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PSSTPPEEDLILGDIRETL 84 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG---GGGEEES-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CCCCCchHheeeccHHHHh
Confidence 566677777777766654 89999999999999999999999999999532211 1111112357788887742
Q ss_pred cC-----CCccEEEEcccccccc-c---HHHHHHHHHhccccCeeEEEEee
Q 022864 127 ME-----ASYDRIYSIEMFEHMK-N---YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~-----~~~D~i~~~~~l~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. .+.-++.+..-.+.-. | ...+-.-+..+|.|||+++-..+
T Consensus 85 ~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 85 PALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp HHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred HHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 21 2333333332222111 1 12233446788999999876443
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.064 Score=45.40 Aligned_cols=126 Identities=11% Similarity=0.090 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHH---C--CCCEEEEEcCCH-------------------
Q 022864 43 TLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQK---Y--SNCKITGICNSK------------------- 97 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~---~--~~~~v~~vD~s~------------------- 97 (291)
.+.......+..+++.+. ..-+..|+|+||-.|..+..++.. + ++-++++.|.-.
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh
Confidence 334444445556665543 122349999999999877665432 2 345788887211
Q ss_pred -------HHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 98 -------TQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 98 -------~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...+..++++...|+ +++.++.+.+.+..+. .++-++.... .........|+.+...|.|||++++
T Consensus 133 ~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 133 EYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp GCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEE
Confidence 123333444444454 5799999999774333 3332222221 1124457789999999999999999
Q ss_pred Eeecc
Q 022864 166 HHFCH 170 (291)
Q Consensus 166 ~~~~~ 170 (291)
.+.+.
T Consensus 211 DDY~~ 215 (248)
T PF05711_consen 211 DDYGH 215 (248)
T ss_dssp SSTTT
T ss_pred eCCCC
Confidence 76654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.21 Score=44.01 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=62.8
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-------CccCCCc
Q 022864 60 RLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEMEASY 131 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-------~~~~~~~ 131 (291)
...++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++ .+.+. +..+-.. ......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcCCCc
Confidence 45678899999887 478888888776 7899999999987666533 34321 1111111 1112568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+..... ...++.+.+.|+++|.++...
T Consensus 234 D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 988754211 346778889999999988754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.078 Score=42.60 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------C-CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------E-AS 130 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------~-~~ 130 (291)
.+..|+++|.-.|+.++..|.. . ...+|.++|++-...+-+... .++|.|+.++-.+... . +.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 3569999999999988877753 2 237999999887654332211 3589999999887531 1 23
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
--+.+|..+-|+....-+.++.+.++|..|-++++.+......|
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 35556777777777777888888999999999999887766654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.011 Score=42.76 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCC
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 96 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s 96 (291)
.+....+|||||.|.+...|.+. |..-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence 35668999999999999988877 8888999963
|
; GO: 0008168 methyltransferase activity |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.15 Score=45.64 Aligned_cols=96 Identities=10% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcC---CHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE
Q 022864 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICN---SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~ 136 (291)
..++.+||=+|+| .|.++..+++.. +++|++++. ++...+.+ ++.|.+.+.....+..+......+|+|+-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~----~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIV----EELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHH----HHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 4578899999987 366777777765 779999986 56654443 33444211111111111011146888876
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
... ....+....+.|++||.+++..
T Consensus 245 ~~g------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 245 ATG------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CcC------CHHHHHHHHHHccCCcEEEEEe
Confidence 432 1236778889999999987644
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.014 Score=45.40 Aligned_cols=100 Identities=23% Similarity=0.272 Sum_probs=62.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-C-ccCCCccEEEEcccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F-EMEASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~~D~i~~~~~l 140 (291)
+++++-+|+..-..-....+. ..++|..||.++--++ +.++ +++ .+...|+.. + ...++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~---~~~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ---EEFR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC---cccc----cccccccHHHHHHHHHHhhccchhhheechh
Confidence 578888888865554444444 2567888886542111 1110 111 122222222 1 112789999999999
Q ss_pred cccc-----c------HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMK-----N------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~-----~------~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+|+. | -.+.+.++.++|||||.|++..|.-+
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8871 1 24678889999999999999888654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.092 Score=47.42 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=54.4
Q ss_pred cCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEc
Q 022864 15 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 94 (291)
Q Consensus 15 yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD 94 (291)
||+-...|..+++ ...|+ ..|+++ +.-.+.+.+.++.+||-|.+|......++.+. ..+|++||
T Consensus 1 ~~~~~~~~~~~f~-~lvY~-~~WEDp------------~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P~~I~aVD 64 (380)
T PF11899_consen 1 YGLLERLFTQFFR-GLVYA-QCWEDP------------RVDMEALNIGPDDRVLTITSAGCNALDYLLAG--PKRIHAVD 64 (380)
T ss_pred CchHHHHHHHhcc-ceeec-cccCCc------------HHHHHHhCCCCCCeEEEEccCCchHHHHHhcC--CceEEEEe
Confidence 5666667777766 36674 467644 12234467889999999988877777776643 68999999
Q ss_pred CCHHHHHHHHHH
Q 022864 95 NSKTQKEFIEEQ 106 (291)
Q Consensus 95 ~s~~~~~~a~~~ 106 (291)
+||.+....+=+
T Consensus 65 lNp~Q~aLleLK 76 (380)
T PF11899_consen 65 LNPAQNALLELK 76 (380)
T ss_pred CCHHHHHHHHHH
Confidence 999998776543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.16 Score=43.22 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~~~~ 139 (291)
.|..|+-+| -.-..++.++-..-..+|..||++...++...+-+.+.|++++..+.-|+...-+. .+||+++...
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDP- 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDP- 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCc-
Confidence 466788888 33344444443332569999999999999999999999998899999999885433 8999877654
Q ss_pred ccccccHHHHHHHHHhccccC---eeEEEE
Q 022864 140 FEHMKNYQNLLKKISKWMKED---TLLFVH 166 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~Lkpg---G~l~~~ 166 (291)
-+.++....++.+=...||.- |++.++
T Consensus 230 peTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 230 PETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred hhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 345666777887777778765 555553
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.42 Score=42.34 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=61.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
.....+++.+||=.|+| .|..+..+++.. +++|++++.+++..+.++ +.|.+.+ + |..+. ..+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~----~~Ga~~v--i--~~~~~-~~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLAL----ALGAASA--G--GAYDT-PPEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HhCCcee--c--ccccc-CcccceEEE
Confidence 34566789999999976 455666677665 789999999988655544 4454221 1 11111 124578765
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..... ...+....+.|++||++++.-
T Consensus 229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 43221 246788889999999987754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.61 Score=38.33 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCcc----hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccc-cCCccC-CCccEEE
Q 022864 63 DGHTVLDVGCGWG----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADI-STFEME-ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G----~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~~~~~-~~~D~i~ 135 (291)
....+++..|+.| .++...|.+..+.++++|-+++..+...++.+...++. .++|+.++. ++.... ...|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4568888876644 23444444555889999999988887788888777773 468988884 344333 7789888
Q ss_pred EcccccccccHH-HHHHHHHhccccCeeEEEEee
Q 022864 136 SIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..--. .+.. ++|+.+. +.|.|.+++..-
T Consensus 121 VDc~~---~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 121 VDCKR---EDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred EeCCc---hhHHHHHHHHhc--cCCCceEEEEec
Confidence 76443 4444 5555433 556677666443
|
The function of this family is unknown. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.16 Score=44.66 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=51.5
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C-CccEEEEcccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A-SYDRIYSIEMFEH 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~-~~D~i~~~~~l~~ 142 (291)
+++|+-||.|+++.-+.+.. ...+.++|+++...+..+.|.. ....+|+.++... . .+|+++...+...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence 79999999999999988762 2467899999998887777663 6788999987643 3 5999999776544
Q ss_pred c
Q 022864 143 M 143 (291)
Q Consensus 143 ~ 143 (291)
+
T Consensus 74 f 74 (335)
T PF00145_consen 74 F 74 (335)
T ss_dssp T
T ss_pred E
Confidence 4
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=44.78 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=71.0
Q ss_pred CCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 64 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
+.+|.=||.| .|..+..++.-. ++.|+.+|+|..-+......+ + .++.........+... .+.|+++..-.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f---~-~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF---G-GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh---C-ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4577888888 467777776554 899999999988766655443 2 2566766666555444 6789999876555
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
--+.+.-+.+++.+.||||++++=
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEE
Confidence 556777889999999999998764
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.19 Score=44.63 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022864 46 DAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 105 (291)
+-+.+.+.+++..+. ..+-..|+|+|.|.|.++..++-.+ +..|.+||-|....+.|++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 334445555555443 3466799999999999999999877 8999999999777666654
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.45 Score=42.33 Aligned_cols=95 Identities=9% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022864 60 RLEDGHTVLDVGCGW-GSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
...++.+||=+|||. |.++..++++ ..+.+|+++|.+++.++.+++ .+. . .... ++.....+|+|+-.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~---~~~~~~g~d~viD~ 229 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLID---DIPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehh---hhhhccCCcEEEEC
Confidence 456789999999873 4455566654 435689999999887766653 221 1 1111 11111247888743
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
--- ......+....+.|++||++++..
T Consensus 230 ~G~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 230 VGG---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 210 113457888889999999987754
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.31 Score=41.21 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
.+.+++..+|+|.-.|+.+-.|.++ +..|++||..+- + +..-..| .|+....|-..+.+. .+.|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m----a-~sL~dtg--~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM----A-QSLMDTG--QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchh----h-hhhhccc--ceeeeeccCcccccCCCCCceEEeeh
Confidence 4568999999999999999999988 889999997553 2 2222233 688888998888764 7899888864
Q ss_pred cccccccHHHHHHHHHhcc
Q 022864 139 MFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L 157 (291)
+ +.+.++-..+..+|
T Consensus 279 V----EkP~rv~~li~~Wl 293 (358)
T COG2933 279 V----EKPARVAALIAKWL 293 (358)
T ss_pred h----cCcHHHHHHHHHHH
Confidence 3 34555555555544
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.23 Score=42.81 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=59.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc----cCCccCCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADI----STFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~----~~~~~~~~ 130 (291)
......++.+||=+|+| .|..+..+++.. +++ |+++|.+++..+.+++ .|.+.+ +...+. ........
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCC
Confidence 34455688899999886 455666677665 665 9999998886655543 343211 100111 01111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-... ....++.+.+.|+|+|++++..
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 888875321 1346777888999999987654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.91 Score=42.83 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCC-cc--CCCccE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTF-EM--EASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~-~~--~~~~D~ 133 (291)
++..|.|..||+|.+.....+.. ....++|.+..+.+...++.++...+. +......+|-... .. ..+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 66899999999999887654332 124689999999999998888665554 1233333443321 11 156899
Q ss_pred EEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+++.++... ..-..++..+...|++||...+..+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 9988754321 0112467778889999998666544
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.1 Score=45.33 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--------------------CCCEEEEEcCCHHH--HHHHHHHHHHh-----------
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--------------------SNCKITGICNSKTQ--KEFIEEQCRVL----------- 110 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--------------------~~~~v~~vD~s~~~--~~~a~~~~~~~----------- 110 (291)
..+||.||.|-|.=...++..+ +...++.||+.+-. ++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999987555554433 11489999987653 22222222222
Q ss_pred -CC---C--CeEEEEccccCCccC--------CCccEEEEccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022864 111 -EL---Q--NVEIIVADISTFEME--------ASYDRIYSIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 111 -~~---~--~v~~~~~d~~~~~~~--------~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. + ++.|.+.|+.....+ ...|+|...+.++.+ ....++|.++-..++||..|+|.+.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 01 1 478999999886542 135777666655433 5567899999999999999888653
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.5 Score=43.25 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=61.2
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
++.+++..+. .++.+|+=+|||. |.....+++.. |++|+++|.++...+.|+. .|. ... +..+. -.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e~--v~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGY---EVM--TMEEA--VK 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCC---EEc--cHHHH--Hc
Confidence 3455554443 4789999999996 54455455544 7899999999886554432 343 221 12221 14
Q ss_pred CccEEEEcccccccccHHHHHHH-HHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKK-ISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 167 (291)
.+|+|+... .....+.. ..+.+|+||+++...
T Consensus 257 ~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 579998642 12344554 488999999987654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.26 Score=42.14 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=44.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
+.+...++|+|||.|.++.++++.. +...++.||-...-. .+-...+.... ..+.-+..|+.++..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccch
Confidence 4677899999999999999999876 456899999755322 22223333221 246666777777653
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.37 Score=40.65 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC---CccCCCccEEEE
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST---FEMEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~---~~~~~~~D~i~~ 136 (291)
.++.+||-.|+|. |..+..+++.. +.+|++++.++...+.+++ .+... +.....+... ......+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 6789999999985 66777777665 7899999999876655533 23211 1111111100 011256899886
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...- ...+..+.+.|+++|.++...
T Consensus 208 ~~~~------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 208 AVGG------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCC------HHHHHHHHHhcccCCEEEEEc
Confidence 4321 145677788899999987644
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.4 Score=43.19 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=61.0
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC-Cc--cCCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST-FE--MEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~--~~~~ 130 (291)
+.....++.+||=.|+| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. +.....|..+ +. ..+.
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCC
Confidence 44566788899999986 356667777665 66 69999999987666543 34321 1111111111 00 1135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 260 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAG------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCC------ChHHHHHHHHHHhcCCEEEEEc
Confidence 888875321 1345677778899999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.81 Score=40.48 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcccc---CCccCCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS---TFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~---~~~~~~~ 130 (291)
..+...++.+||=+|+| .|..+..+++.. +++ |++++.+++..+.+++ .|.+. +.....+.. +......
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCC
Confidence 44566789999999876 355666667665 677 9999999887665543 34321 111111111 1111136
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 232 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSG------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 898875421 1334566778899999987643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.51 Score=40.60 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=51.8
Q ss_pred ChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH
Q 022864 18 PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK 97 (291)
Q Consensus 18 ~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~ 97 (291)
+..+|..+++. ..|+ ..|+++...++.. ....+.+|.-||+|......+++.. .++|.+||+++
T Consensus 32 serlf~vlFsg-LvYp-qiwEDp~Vdmeam------------~~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ 95 (414)
T COG5379 32 SERLFGVLFSG-LVYP-QIWEDPSVDMEAM------------QLGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNP 95 (414)
T ss_pred hHHHHHHHhcc-cccc-cccCCccccHHHH------------hcCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCH
Confidence 35566655554 5664 5676554433321 2456889999999988888888765 78999999999
Q ss_pred HHHHHHHHHH
Q 022864 98 TQKEFIEEQC 107 (291)
Q Consensus 98 ~~~~~a~~~~ 107 (291)
.++...+-+.
T Consensus 96 ahiAln~lkl 105 (414)
T COG5379 96 AHIALNRLKL 105 (414)
T ss_pred HHHHHHHHHH
Confidence 9987765443
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.82 Score=40.92 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCC
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEAS 130 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~----~~~~~~ 130 (291)
.....++.+||=.||| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+. +.....+..+ ......
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 3456789999999986 366677777765 66 59999999987666643 34321 1111111111 111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-.-. . ...++...+.+++||++++..
T Consensus 246 ~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEC
Confidence 888875321 1 245666778999999987643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.2 Score=45.81 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccC--CccC--CCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADIST--FEME--ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~d~~~--~~~~--~~~D~i 134 (291)
.....++|+|.|.|.-.-.+....+ .-.++.||.|..|......+.+. .....+.....-+.. ++.+ ..||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 3456889999997765544444433 34789999999999888777655 111111111101111 1222 569999
Q ss_pred EEcccccccccH----HHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++.+.++++... ...-...++..++|+.+++...+.+
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999888432 2234446677889999888776543
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.21 Score=41.11 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
+..+.++.+.+.-.+.-|.+||.|.|+.++.+.+.. ..+...|+.++..+.-.+-..+... .+...+.+|+..+.
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence 445666666676778899999999999999998763 4588899999988887765555333 36778888876653
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.94 Score=40.00 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=60.3
Q ss_pred cCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccCCccC-CCcc
Q 022864 59 SRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DISTFEME-ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~-~~~D 132 (291)
+...++.+||-.|||. |..+..+++.. +. .+++++.++...+.+++ .+.+. ++.. +....... ..+|
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhccCCCcc
Confidence 3434788999999875 66777777765 66 79999998887664433 33321 1111 11122112 4589
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+..... ...++.+.+.|+++|+++...
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 98865321 235677889999999987643
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.5 Score=35.35 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=56.7
Q ss_pred CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC-CCccEEEEccccccccc
Q 022864 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYDRIYSIEMFEHMKN 145 (291)
Q Consensus 73 G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~-~~~D~i~~~~~l~~~~~ 145 (291)
|.|..+..+++.. +++|+++|.++...+.+++ .|.+ .++..+-.++. .+ ..+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecC------
Confidence 4688899999887 6999999999997666554 4432 12222211111 11 46898886533
Q ss_pred HHHHHHHHHhccccCeeEEEEeec
Q 022864 146 YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 146 ~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
....++...++|+|+|.+++....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 256888899999999999886543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.2 Score=35.42 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=59.9
Q ss_pred EcCCcchHHHHHHHHCC-CCEEEEEcCCHH--HHHHHH---HHHHHhCCCCe-EEEEccccCCcc----C-CCccEEEEc
Q 022864 70 VGCGWGSLSLYIAQKYS-NCKITGICNSKT--QKEFIE---EQCRVLELQNV-EIIVADISTFEM----E-ASYDRIYSI 137 (291)
Q Consensus 70 iGcG~G~~~~~la~~~~-~~~v~~vD~s~~--~~~~a~---~~~~~~~~~~v-~~~~~d~~~~~~----~-~~~D~i~~~ 137 (291)
+|=|.-.++..|++.+. +..+++...+.+ ..+... +++....-.++ .....|+.++.. . ..||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56666678888888865 556655544333 222221 22222211122 234567766532 2 789999998
Q ss_pred ccccc-----c--------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEH-----M--------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~-----~--------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+... - .-+..++..+.++|+++|.+.|....
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 76544 1 11356889999999999999886553
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.17 Score=46.47 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cCCCccEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------MEASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~D~i 134 (291)
.+..+|-+|-|.|.+...+....|..++++|+++|.+++.+.+++....-.+..++..|-.+.. ....||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 4568888999999999998888888999999999999999998764322112333333333221 11578988
Q ss_pred EEcc---cccccc----c--HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIE---MFEHMK----N--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~---~l~~~~----~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+..- -.+.+. . -..++..++..|.|.|.+++...++.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 7632 122221 1 24588889999999999988766553
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.71 Score=40.95 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=66.2
Q ss_pred HHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCc----c
Q 022864 55 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFE----M 127 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~----~ 127 (291)
+.+....+++.+||=.|+ |.|.++..|++.. ++.++++-.+++..+ .+++.|.+. +.+...|+.+.. .
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 334456778999999984 5778999999887 657777777776443 334455432 334444443321 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
...+|+|+..- -...+.+..+.|+++|.++....
T Consensus 209 g~gvDvv~D~v-------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTV-------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCceEEEECC-------CHHHHHHHHHHhccCCEEEEEec
Confidence 14699998742 24566778889999999877543
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.81 Score=40.01 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEcccc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~ 123 (291)
+..+.++..+...-...-..|+-||||--.-+-.+-.. ++.+|+-+|. |+.++.-++..++.+. ...+++..|+.
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~ 153 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEecccc
Confidence 34445666555433333679999999965544443321 2578899998 7777777777777664 25889999998
Q ss_pred CCcc----------CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEM----------EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~----------~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... ...--++++-+++.+++ ...+++..+.....||..+++...
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 4321 13345788888998883 467899999999999998887654
|
|
| >cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.64 Score=33.43 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~ 144 (291)
+|| +-||.|..+..++++ .++.+++.|+ .+++......+.+.. ..+|+|+.. +
T Consensus 2 ~Il-l~C~~GaSSs~la~k------------------m~~~a~~~gi-~~~i~a~~~~e~~~~~~~~Dvill~------P 55 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA------------------LNKGAKERGV-PLEAAAGAYGSHYDMIPDYDLVILA------P 55 (99)
T ss_pred EEE-EECCCCCCHHHHHHH------------------HHHHHHHCCC-cEEEEEeeHHHHHHhccCCCEEEEc------C
Confidence 445 568888666666655 5677777888 577777777776544 678988887 4
Q ss_pred cHHHHHHHHHhccccCeeEEEE
Q 022864 145 NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...-.++.+.+.+.+-|+-+..
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEEE
Confidence 4455677788888887764443
|
In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.84 Score=33.46 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=55.1
Q ss_pred CCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcccccccc
Q 022864 72 CGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 72 cG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~i~~~~~l~~~~ 144 (291)
||.|..+..+++.. .+..|+.+|.+++.++.+++ . .+.++.+|..+... . ..+|.|++...- .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~---d 73 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDD---D 73 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSS---H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCC---H
Confidence 56677777776643 24589999999997655543 3 36789999988531 2 678888775332 1
Q ss_pred cHHHHHHHHHhccccCeeEEEEee
Q 022864 145 NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.....+....+.+.|...+++...
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 223344455566778888776554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.54 Score=35.26 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=49.4
Q ss_pred CCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 64 GHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
..+|+|+|-|.=. .+..|.+. |..|+++|+.+. .+. . .+.++..|+.+.... ...|+|.|..+-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 3499999999654 56666666 799999999887 121 2 567999999986555 789999997655
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.. +...+-++.+ +-|.-+++...+.+
T Consensus 81 ~E---l~~~il~lA~--~v~adlii~pL~~e 106 (127)
T PF03686_consen 81 PE---LQPPILELAK--KVGADLIIRPLGGE 106 (127)
T ss_dssp TT---SHHHHHHHHH--HHT-EEEEE-BTTB
T ss_pred hH---HhHHHHHHHH--HhCCCEEEECCCCC
Confidence 33 3333444443 24566777665544
|
; PDB: 2K4M_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.25 Score=43.59 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=49.9
Q ss_pred EEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccccc
Q 022864 67 VLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~~~ 143 (291)
|+|+-||.|+++.-+.+. +.+ +.++|+++...+..+.+.. . .+..+|+.++... ..+|+++...+...+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 689999999999988765 565 4579999998777666542 2 3456788776532 468999887654433
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.52 Score=46.12 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC-------C-----CCEEEEEcCCH---HHHHHHH-----------HHHHH-----h
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY-------S-----NCKITGICNSK---TQKEFIE-----------EQCRV-----L 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~-------~-----~~~v~~vD~s~---~~~~~a~-----------~~~~~-----~ 110 (291)
.+.-+|+|+|=|+|.......+.+ | ..+++++|..| +.+..+. +.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445799999999999766665433 2 24788999644 3332222 11111 1
Q ss_pred CC-------C--CeEEEEccccCCccC--CCccEEEEcccccc-ccc--HHHHHHHHHhccccCeeEEEE
Q 022864 111 EL-------Q--NVEIIVADISTFEME--ASYDRIYSIEMFEH-MKN--YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 111 ~~-------~--~v~~~~~d~~~~~~~--~~~D~i~~~~~l~~-~~~--~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+ . ++++..+|+.+.... ..+|+++....-.. -++ ...+++.+.++++|||++.-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 21 1 345667888764322 56999998652211 122 257999999999999998753
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.5 Score=32.19 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=57.6
Q ss_pred CEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022864 65 HTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~ 141 (291)
.+|.++|-|-=. .+..|+++ +..|+++|+++. ++ + ..++++..|+++.... ...|+|.|.-+-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY~~A~lIYSiRpp- 80 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TA---P-EGLRFVVDDITNPNISIYEGADLIYSIRPP- 80 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cC---c-ccceEEEccCCCccHHHhhCccceeecCCC-
Confidence 399999988654 46666665 799999999876 11 1 2678999999997655 778999986443
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++....+-.+.+.+ |..+++...+
T Consensus 81 --pEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 81 --PELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred --HHHHHHHHHHHHhh--CCCEEEEecC
Confidence 33344444444432 4455554443
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=2.8 Score=34.76 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
.+.+||-.|++ |..+..+++.+ .+.+|++++.+++..+.+.+..... .++.++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35689999885 44444444332 3789999999887665543333322 257888999887420 03
Q ss_pred CccEEEEccccccc---c--------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHM---K--------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~---~--------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..|.++.+...... . ....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877765532111 0 112345566667777887766543
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.81 Score=40.87 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=62.4
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEc-cccC-Cc--cCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVA-DIST-FE--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~-d~~~-~~--~~~ 129 (291)
+.....++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ ..|.+. +..... +..+ .. ...
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 3345678999999997 3788888888776 8899999988886555432 234421 111111 1111 00 113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-.- . ...+....++|+++|.+++.
T Consensus 228 gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECC-----C--HHHHHHHHHHhccCCEEEEE
Confidence 578887531 1 23677788999999998764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.13 Score=44.64 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=39.1
Q ss_pred CeEEEEccccCCc--c-CCCccEEEEccccccc----------------ccHHHHHHHHHhccccCeeEEEE
Q 022864 114 NVEIIVADISTFE--M-EASYDRIYSIEMFEHM----------------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 114 ~v~~~~~d~~~~~--~-~~~~D~i~~~~~l~~~----------------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..++++|..+.. . .+++|+|+++.++... .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567888888742 2 2789999998876421 11246889999999999999885
|
|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=92.01 E-value=1 Score=32.08 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=48.1
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~ 143 (291)
.+|| +-||+|..+..++++ .++.+++.|+ .+++...++.+.... ..+|+|+...-+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi--- 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQV--- 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECchH---
Confidence 4666 669999777766654 4566677787 578888877765433 578999987433
Q ss_pred ccHHHHHHHHHhccccCee
Q 022864 144 KNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~ 162 (291)
...+.++.+.+.+-|.
T Consensus 61 ---~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 61 ---AYMLPDLKKETDKKGI 76 (95)
T ss_pred ---HHHHHHHHHHhhhcCC
Confidence 4456666666665444
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.52 Score=42.61 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=55.0
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
++.+|+=+|+| .|..+...+... +++|+++|.+++..+.+... .+. .+.....+...+... ..+|+|+..-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~---~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAE---FGG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHh---cCc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45689999998 456666666555 78999999988754433322 121 122111111121111 578999976433
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEe
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...+.+.-+-+...+.++||++++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111111112355567789998765433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.91 Score=36.57 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=55.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc----------CCC
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM----------EAS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~----------~~~ 130 (291)
...|+.||||--.....+....++.+++-+|. |+.++.-++..+..+. .+.+++.+|+.+... +..
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 34999999999988888887655788899998 6667666666655432 235679999986321 134
Q ss_pred ccEEEEcccccccc--cHHHHHHH
Q 022864 131 YDRIYSIEMFEHMK--NYQNLLKK 152 (291)
Q Consensus 131 ~D~i~~~~~l~~~~--~~~~~l~~ 152 (291)
.-++++-+++.+++ ....+++.
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHH
Confidence 45778888888884 33444444
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.6 Score=38.33 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccCC---ccCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DISTF---EMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~---~~~~ 129 (291)
+.....++.+||=.|. |.|..+..+++.. +++|++++.+++..+.++ ..|.+.+ ..... +..+. ...+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhCCC
Confidence 4456778999998884 5788888888776 889999998888665553 3444211 11110 11110 0114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-. +. ...+....++|+++|+++..
T Consensus 207 gvdvv~d~-----~G--~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDN-----VG--GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEEC-----CC--HHHHHHHHHHhCcCcEEEEe
Confidence 58887753 11 12457788999999998864
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.75 Score=42.81 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHcC---CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE
Q 022864 43 TLEDAEKAMLELYCERSR---LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~ 119 (291)
.+..+....+..++.... .....+++|+-||.|+++.-+-... ...|.++|+++.+.+.-+.|... .+......
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~ 140 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYC--DPATHRFN 140 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCC--CCccceec
Confidence 444444445555443221 1225699999999999999887652 34567999999977666655421 11233445
Q ss_pred ccccCCcc-----------------C-CCccEEEEcccccc
Q 022864 120 ADISTFEM-----------------E-ASYDRIYSIEMFEH 142 (291)
Q Consensus 120 ~d~~~~~~-----------------~-~~~D~i~~~~~l~~ 142 (291)
+|+.++.. . ..+|+++...+...
T Consensus 141 ~DI~~i~~~~~~~~~~~~~~~~~~~~~p~~DvL~gGpPCQ~ 181 (467)
T PRK10458 141 EDIRDITLSHKEGVSDEEAAEHIRQHIPDHDVLLAGFPCQP 181 (467)
T ss_pred cChhhCccccccccchhhhhhhhhccCCCCCEEEEcCCCCc
Confidence 66665531 1 25798888665543
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=91.79 E-value=2.7 Score=36.82 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=60.5
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEE
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~ 135 (291)
....++.+||-.||| .|..+..+++.. +.+|++++.+++..+.+++ .+.+. ++...-.... ..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADE--VVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcE--EeccCCcchHHhccCCCCEEE
Confidence 456778899999987 677777777765 7899999999987666532 23211 1111100100 124588887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....- ...+..+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 64211 235677788999999887653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.8 Score=35.73 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=59.6
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccCCCccEE
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
.....++.+||-.|||. |..+..+++.. +.+ |++++.+++..+.+++ .| .+.+..... .......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEA----LGPADPVAADTA---DEIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH----cCCCccccccch---hhhcCCCCCEE
Confidence 45567889999998874 66777777765 667 9999998887665443 23 111110000 11112468988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC------hHHHHHHHHHhcCCcEEEEE
Confidence 754211 23567778889999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.38 E-value=4.1 Score=35.73 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----ccCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 129 (291)
......++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++ .+.+ .++..+-... ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCC
Confidence 44566788999999876 366677777765 666 8999999887665533 3332 1222111111 1125
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+.... ....+..+.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 6899986421 1346777788899999987644
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.8 Score=40.73 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=57.8
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc---CCccCCCc
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS---TFEMEASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~---~~~~~~~~ 131 (291)
.....++.+||=.||| .|..+..+++.. +++ |++++.+++..+.++ +.|.+.+ .....+.. .......+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCCC
Confidence 3455678899999886 355666667665 665 789999888665543 3343211 11111111 11111356
Q ss_pred c-EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 D-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D-~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
| +|+-. .. -...+....+.|++||.+++..
T Consensus 230 d~~v~d~-----~G-~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILET-----AG-VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEEC-----CC-CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 44431 11 1346777889999999987753
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.3 Score=38.83 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
.++.+||=+||| .|.++..+++.. +++ |.++|.+++.++.+.+. . .+ |..+. ....+|+|+-...
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASG 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCC
Confidence 356789989986 567777777766 665 77788887765544321 1 11 11111 1246888875422
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
....++.+.+.|+++|++++...
T Consensus 210 ------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------CHHHHHHHHHhhhcCcEEEEEee
Confidence 13467778889999999887543
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.5 Score=37.64 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcc---ccC----CccC
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVAD---IST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d---~~~----~~~~ 128 (291)
.....++.+||=+|||. |..+..+++.. +++|+++|.+++.++.+++ .|.+. +.....+ +.+ ....
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhccc
Confidence 35567899999999964 66777777766 7799999999987766643 34321 1111111 111 0001
Q ss_pred CCcc----EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYD----RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D----~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+| +|+- ... ....++...++|++||++++..
T Consensus 236 ~g~d~~~d~v~d-----~~g-~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIFE-----CSG-SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEEE-----CCC-ChHHHHHHHHHHhcCCeEEEEC
Confidence 2344 4432 111 1345666778899999987754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.1 Score=38.68 Aligned_cols=89 Identities=21% Similarity=0.153 Sum_probs=54.0
Q ss_pred CEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 65 HTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
.+|+=+|.| -|.+++.+.+......+++.|.+....+.+.+ .|+ .....+..........|+|+..-++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHH-
Confidence 578888877 35677777766556678999998886544432 222 12211111011125579999876664
Q ss_pred cccHHHHHHHHHhccccCeeE
Q 022864 143 MKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l 163 (291)
....+++++...|++|..+
T Consensus 76 --~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 --ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred --HHHHHHHHhcccCCCCCEE
Confidence 3456777777777777643
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.6 Score=38.19 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-C--ccCCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F--EMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~--~~~~~ 130 (291)
......++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+.+ .....|+.+ + .....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCC
Confidence 3455678899998883 5777888888776 8899999988886555543 444221 111111111 0 01145
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+-. . . ...+....++|+++|.++..
T Consensus 212 vd~vld~--~---g--~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDN--V---G--GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEEC--C---C--HHHHHHHHHhhccCCEEEEE
Confidence 7887743 1 1 24567888999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.17 E-value=2.6 Score=38.16 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-----ccC-Cc--
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-----IST-FE-- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~~-- 126 (291)
+.....++.+||=+||| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. ++... +.+ +.
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH
Confidence 34566789999999986 455666677666 66 69999999987666643 34421 22111 111 00
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
..+.+|+|+-... ....+....+.+++| |.+++..
T Consensus 265 ~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 0125888875322 124566777788886 8876643
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.62 Score=40.56 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=49.0
Q ss_pred EEEEcCCcchHHHHHH-HHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC--------CccCCCccEEEE
Q 022864 67 VLDVGCGWGSLSLYIA-QKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST--------FEMEASYDRIYS 136 (291)
Q Consensus 67 vLDiGcG~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~--------~~~~~~~D~i~~ 136 (291)
-+|||.|.--+--.+- ..+ +....++|++...+..|++++.++++ +.+.+++....+ ...+..||.+.|
T Consensus 106 GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 4788776543322222 223 56789999999999999999999888 356665553322 122245999999
Q ss_pred ccccc
Q 022864 137 IEMFE 141 (291)
Q Consensus 137 ~~~l~ 141 (291)
+.+|.
T Consensus 185 NPPFf 189 (419)
T KOG2912|consen 185 NPPFF 189 (419)
T ss_pred CCchh
Confidence 98763
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.83 E-value=4.7 Score=35.17 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=59.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
......++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++ .|.+.+. +.........+|+|+
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~----~~~~~~~~~~~d~vi 219 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVL----PDEAESEGGGFDVVV 219 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEe----CccccccCCCCCEEE
Confidence 44566788899998765 344555556555 7889999999887666654 3442111 111112225689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
... . -...+..+.++|+++|.++.
T Consensus 220 d~~-----g-~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EAT-----G-SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECC-----C-ChHHHHHHHHHhhcCCEEEE
Confidence 641 1 13456777888999999886
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.78 Score=40.73 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---C-CccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---A-SYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~-~~D~i~~~~~ 139 (291)
..+++|+-||.|++..-+.... -.-+.++|+++..++.-+.+.. ...++..|+...... . .+|+++...+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhccccCCCEEEeCCC
Confidence 4689999999999998887662 2356799999998777666543 245677888775543 2 7899999887
Q ss_pred cccc
Q 022864 140 FEHM 143 (291)
Q Consensus 140 l~~~ 143 (291)
.+.+
T Consensus 77 CQ~F 80 (328)
T COG0270 77 CQDF 80 (328)
T ss_pred Ccch
Confidence 7655
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.7 Score=37.73 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCcc-CCCccEEEEc
Q 022864 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEM-EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~-~~~~D~i~~~ 137 (291)
..++.+||=.|+| .|..+..+++.. ++++++++.++..... .+++.|.+. ++. .+...... .+.+|+|+-.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~---~~~~~Ga~~--vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDE---AINRLGADS--FLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhh---HHHhCCCcE--EEcCCCHHHHHhhcCCCCEEEEC
Confidence 4578899999986 466777777766 7889888877653222 222334321 111 11111110 1347877743
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. ....++...+.|++||.++...
T Consensus 255 ~g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 255 VS------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CC------CHHHHHHHHHHhcCCcEEEEeC
Confidence 21 1235677888999999987643
|
|
| >cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.1 Score=32.00 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred EcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHH
Q 022864 70 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQN 148 (291)
Q Consensus 70 iGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~ 148 (291)
+-||+|..+..++++ +++.+++.|+ .+++...++.+.... ..+|+|++.. +...
T Consensus 4 ~~Cg~G~sTS~~~~k------------------i~~~~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~P------qv~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVKK------------------MKKAAEKRGI-DAEIEAVPESELEEYIDDADVVLLGP------QVRY 58 (96)
T ss_pred EEcCCCchHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhcCCCCEEEECh------hHHH
Confidence 458888877766654 4667777787 578888887776433 6799999873 3445
Q ss_pred HHHHHHhccccCee
Q 022864 149 LLKKISKWMKEDTL 162 (291)
Q Consensus 149 ~l~~~~~~LkpgG~ 162 (291)
.+.++.+.+.+.+.
T Consensus 59 ~~~~i~~~~~~~~~ 72 (96)
T cd05564 59 MLDEVKKKAAEYGI 72 (96)
T ss_pred HHHHHHHHhccCCC
Confidence 56666665544444
|
In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.37 E-value=2.6 Score=38.52 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..+.+|+=+|+|. |......++.+ +++|+++|.++.....+ ...|. .+ .+..+.. ...|+|++..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A----~~~G~---~v--~~leeal--~~aDVVItaT-- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEA----AMDGF---RV--MTMEEAA--KIGDIFITAT-- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHH----HhcCC---Ee--CCHHHHH--hcCCEEEECC--
Confidence 5789999999996 44444445444 88999999988643222 22232 22 2222211 4579987642
Q ss_pred cccccHHHHHH-HHHhccccCeeEEEEee
Q 022864 141 EHMKNYQNLLK-KISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 168 (291)
....++. .....+|+|++++...-
T Consensus 259 ----G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 2244454 47788999998876543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=90.06 E-value=3.9 Score=32.32 Aligned_cols=96 Identities=8% Similarity=-0.021 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---c--cCCCccEEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---E--MEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~--~~~~~D~i~~ 136 (291)
.++.+|+-|||=+-.....- ...++.+++..|.+... ...+- + .|+.=|.... + ..++||+|++
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~ 92 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVI 92 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-c-ceEECCCCChhhhhhhcCCCceEEEE
Confidence 35689999999765443332 12357799999997763 22222 2 4555555542 1 1278999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..++-.-+-..+....++.++|+++.+++.+.
T Consensus 93 DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 93 DPPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 99993333344566677777789899888664
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.65 Score=42.03 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=51.5
Q ss_pred hCCCCeEEEEccccCCcc---CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 110 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 110 ~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.++++++++.+++.+... ++++|.++....+.+++ ...+.++.+.+.++|||++++-+...+
T Consensus 272 ~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 345789999999998642 48999999999999994 567899999999999999999766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.5 Score=38.86 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc-------ccCCc
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD-------ISTFE 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d-------~~~~~ 126 (291)
......++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++ .+.+.+ .....+ +....
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455667889999988764 66777777776 666 8999888887665543 233211 111111 11111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+....- ...+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 12458999864221 235677888999999987543
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.85 E-value=4 Score=32.81 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=60.9
Q ss_pred EEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hC----------CCCeEEEEccccCCc
Q 022864 66 TVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LE----------LQNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~----------~~~v~~~~~d~~~~~ 126 (291)
+|.=+|+|+=+ ++..++.. |.+|+.+|.+++.++.+++.+.. .+ +.++.+ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH-
Confidence 45668888643 33334433 89999999999999888876654 11 123443 3555544
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
...|+|+=. +.+.++-..++++++.+.+.|+-.|...+.+.
T Consensus 77 --~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 --VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 357877753 34555666889999999999999887755443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=5 Score=33.83 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 129 (291)
.++++|=.|+ +|..+..+++.+ .+.+|+.++.++...+.........+. ++.++.+|+.+...- .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678888885 455555555442 378999999988776666555444333 678889999874211 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 67999887643
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.68 E-value=3.1 Score=36.09 Aligned_cols=76 Identities=24% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 128 (291)
.|..||==|.|.|. .+..++++ ++++...|++++..+...+.+++.| ++....+|+.+.. .+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57788888888774 56667766 7899999999999888888887765 6888899998853 12
Q ss_pred CCccEEEEcccccc
Q 022864 129 ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~~~D~i~~~~~l~~ 142 (291)
+..|+++.+..+-+
T Consensus 113 G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 113 GDVDILVNNAGIVT 126 (300)
T ss_pred CCceEEEecccccc
Confidence 68899998875533
|
|
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.3 Score=34.37 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+.+.+........+.+||-+|.- +|.+...+..+ .++|+.+|+.|.+..... ++++|... .. .+++
T Consensus 32 K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp--------~~v~Fr~~--~~-~~~G 98 (254)
T COG4017 32 KYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP--------NNVKFRNL--LK-FIRG 98 (254)
T ss_pred HHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC--------CCccHhhh--cC-CCCC
Confidence 34444433445678899999986 78887777766 789999999998532211 25666544 11 2237
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.+|+|+-..-+..+. +++++ -++| +.+++.+|...
T Consensus 99 ~~DlivDlTGlGG~~--Pe~L~----~fnp-~vfiVEdP~gn 133 (254)
T COG4017 99 EVDLIVDLTGLGGIE--PEFLA----KFNP-KVFIVEDPKGN 133 (254)
T ss_pred ceeEEEeccccCCCC--HHHHh----ccCC-ceEEEECCCCC
Confidence 899999876665553 33333 3455 45667666543
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.3 Score=39.00 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcccc----CCccCCC
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS----TFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~----~~~~~~~ 130 (291)
......++.+||-.|+|. |..+..+++.. +.+|+++..+++..+.+++ .+.+. +.....++. .......
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCC
Confidence 344567888999998874 77777888775 8899999888887665533 23221 111111111 1111245
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+++.... -...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 899887521 134567788899999997754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=89.41 E-value=2.2 Score=37.74 Aligned_cols=99 Identities=15% Similarity=0.238 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccCC-c--cCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DISTF-E--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~-~--~~~ 129 (291)
+.....++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++. .|.+.+ ..... +..+. . ...
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 3346678999999986 5777888888776 88999999888865555432 344221 11111 21110 0 114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-. +. ...+....++|+++|.++..
T Consensus 221 gvd~v~d~-----~g--~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDN-----VG--GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEEC-----CC--HHHHHHHHHHhccCcEEEEe
Confidence 57887753 12 24577888999999998764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.05 E-value=1.3 Score=34.40 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=31.9
Q ss_pred EEcCCcc--hHHHHHH--HHCCCCEEEEEcCCHHHHHHHHHH--HHHhCC-CCeEEEEccc
Q 022864 69 DVGCGWG--SLSLYIA--QKYSNCKITGICNSKTQKEFIEEQ--CRVLEL-QNVEIIVADI 122 (291)
Q Consensus 69 DiGcG~G--~~~~~la--~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~-~~v~~~~~d~ 122 (291)
|+|+..| .....+. ...++.+|+++|++|..++..+++ +..+.. ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655553 345678999999999999988888 444322 1355554443
|
; PDB: 2PY6_A. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.05 E-value=3.1 Score=37.62 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=57.3
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEE--ccccCC-c--cCCC
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIV--ADISTF-E--MEAS 130 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~--~d~~~~-~--~~~~ 130 (291)
....++.+||-.|+| .|..+..+++.. ++ .|+++|.+++..+.++ ..|.+.+ .... .++... . ..+.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHHHhCCC
Confidence 456789999999886 355666667665 66 6889998888665553 3444211 1110 011110 0 0135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
+|+|+-... ....+....+.|++| |++++.
T Consensus 264 ~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSFECVG------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEEECCC------ChHHHHHHHHhhccCCCEEEEE
Confidence 788775321 123566777888998 998764
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.95 E-value=2.2 Score=39.66 Aligned_cols=100 Identities=7% Similarity=-0.011 Sum_probs=59.0
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
++.+++..+. ..+.+|+=+|+|. |......++.+ +++|+++|.++.....+ ...|. .+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA----~~~G~---~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQA----LMEGY---QVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHH----HhcCC---eec--cHHHHH--h
Confidence 4444444333 4689999999994 44444444445 78999999988643222 22233 221 222211 4
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..|+|+....- ..-+.....+.||+||+++...-
T Consensus 309 ~ADVVI~tTGt-----~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGN-----KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCC-----ccchHHHHHhcCCCCCEEEEcCC
Confidence 67999873221 22234667888999999877543
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.45 Score=37.81 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc---------------cCC-
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI---------------STF- 125 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---------------~~~- 125 (291)
++.+|+=+|.| .|.-+..++... +++++..|..+...+... ..+...+.....+- ...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLE----SLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHH----HTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhh----cccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 56899999999 466777777776 899999999888554433 22221222210000 000
Q ss_pred -ccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022864 126 -EME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 126 -~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.+. ..+|+|+.+..+..-..+.-+-++..+.||||..++
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 011 468999887666444444445566778888777554
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=88.84 E-value=5.4 Score=35.54 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc-------cCCccCCCc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI-------STFEMEASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~-------~~~~~~~~~ 131 (291)
.++.+||=.|+| .|..+..+++.. ++ +|++++.+++..+.++ ..|.+.+ .....+. .+......+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 378889988875 355566667665 77 8999998887654443 3344221 1111111 111112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+....- ...+....+.|+++|+++...
T Consensus 251 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASGH------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCCC------hHHHHHHHHHhccCCEEEEEc
Confidence 988854211 235667788999999987643
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.9 Score=39.05 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=46.9
Q ss_pred CEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022864 65 HTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~~~ 139 (291)
++||=|||| .|........+....+|+..|-|.+..+.+.. ....+++..+.|+.+.+.- ..+|+|++...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~----~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAE----LIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh----hccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 589999996 34433333222223799999999886544433 2223788999999886321 56799988654
Q ss_pred c
Q 022864 140 F 140 (291)
Q Consensus 140 l 140 (291)
.
T Consensus 78 ~ 78 (389)
T COG1748 78 P 78 (389)
T ss_pred c
Confidence 3
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=88.58 E-value=9.1 Score=33.45 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.+.+|+=+|+|. |......++.. +++|+++|.++...+.+ ...|. .+. +..++... ..+|+|+..-+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~----~~~G~---~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARI----TEMGL---SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH----HHcCC---eee--cHHHHHHHhCCCCEEEECCCh
Confidence 588999999984 33333444444 78999999998754333 33333 222 12222211 578999985322
Q ss_pred cccccHHHHHHHHHhccccCeeEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.-+-+.+.+.++||++++-
T Consensus 221 ------~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 221 ------LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred ------hhhhHHHHHcCCCCcEEEE
Confidence 1233456677889876553
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.7 Score=37.06 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhc
Q 022864 77 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKW 156 (291)
Q Consensus 77 ~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~ 156 (291)
++..|.+..+..+|+|+|.++..++.+. +.|+ +.-...+.... ..+|+|+..-+.. ....+++++...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~----~~g~--~~~~~~~~~~~---~~~DlvvlavP~~---~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL----ELGI--IDEASTDIEAV---EDADLVVLAVPVS---AIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH----HTTS--SSEEESHHHHG---GCCSEEEE-S-HH---HHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH----HCCC--eeeccCCHhHh---cCCCEEEEcCCHH---HHHHHHHHhhhh
Confidence 3566777766799999999999765554 3454 11222221111 4579999877664 345667777777
Q ss_pred cccCeeE
Q 022864 157 MKEDTLL 163 (291)
Q Consensus 157 LkpgG~l 163 (291)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 7766543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.45 E-value=5.8 Score=35.58 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=59.2
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc--ccC-Cc--cC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD--IST-FE--ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d--~~~-~~--~~ 128 (291)
+.....++.+||=+|+| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+.+ .....+ +.+ +. ..
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC
Confidence 34456788999999876 355666677666 66 79999998887666543 343211 111100 001 00 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
..+|+|+-... ....+....+.|+++ |.+++..
T Consensus 253 ~g~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECTG------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECCC------ChHHHHHHHHhcccCCCEEEEEc
Confidence 45888875321 134567778889885 8887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.37 E-value=4.8 Score=34.87 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=57.4
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--------CC----------CCeEEEEccccC
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------EL----------QNVEIIVADIST 124 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~v~~~~~d~~~ 124 (291)
.+|.=||+|.-+ ++..++.. +.+|+.+|.+++.++.+++..... .+ .++.+ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 478888998543 33444433 789999999999888877653211 01 12222 233322
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
. -...|+|+..-+ +...-...+++++...++++..+..
T Consensus 81 a--~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 A--VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred H--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 146788887533 2233356788888888887776544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=7.9 Score=34.34 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
.+.+||=.|++. .++..+++.+ .+++|+.++.+++.++...+.++..+. ++.++.+|+.+... -+
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 356788887644 4444443321 278999999988877666665555554 68888999877431 04
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999876643
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.30 E-value=4.1 Score=36.57 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEc--cccCCc---cC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVA--DISTFE---ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~~~---~~ 128 (291)
+....+++.+||=+|+| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. +..... ++.+.. ..
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhC
Confidence 44556789999999875 455666677665 67 79999999987665543 34421 111111 111100 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
+.+|+|+-.. . ....+....+.|+++ |.+++..
T Consensus 255 ~g~d~vid~~-----g-~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTFECI-----G-NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEEECC-----C-ChHHHHHHHHhhccCCCeEEEEc
Confidence 3588887531 1 134667778889887 8877643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.8 Score=38.26 Aligned_cols=99 Identities=11% Similarity=0.133 Sum_probs=59.6
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcc---ccCCccCCCc
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQN-VEIIVAD---ISTFEMEASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d---~~~~~~~~~~ 131 (291)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.++ ..+... +...... +........+
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHhCCCCC
Confidence 34566788999998765 66777777665 776 999998887655443 233311 1111001 1111111458
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+... .....+..+.++|+++|.++...
T Consensus 229 d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 9988641 11345677889999999976643
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.7 Score=38.95 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=64.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 133 (291)
.+...++.+|+|..|-.|.-+.+++...+ ..++.++|.+..-.+..++..+..|...++...+|+...+.+ .....
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 34567789999999999999888887643 568999999999999999999999987788888888875333 34455
Q ss_pred EEEcccc
Q 022864 134 IYSIEMF 140 (291)
Q Consensus 134 i~~~~~l 140 (291)
|++.++.
T Consensus 288 iL~Dpsc 294 (413)
T KOG2360|consen 288 ILVDPSC 294 (413)
T ss_pred EEeCCCC
Confidence 5554433
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=88.06 E-value=3.6 Score=33.28 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=52.5
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHH------------HHHhC-CCCeEEEEccccCCccCC
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQ------------CRVLE-LQNVEIIVADISTFEMEA 129 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~------------~~~~~-~~~v~~~~~d~~~~~~~~ 129 (291)
++|-=+|.|- |. .+..+++. |.+|+|+|++++-++..++- .++.. -.++.+. .|..... .
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai--~ 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI--K 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH--H
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh--h
Confidence 4677788884 43 34445544 89999999999987766531 11100 0133332 2333211 3
Q ss_pred CccEEEEcccccc-------cccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEH-------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
..|+++..-.... +....++++.+.+.|+++..+++.+..
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 4677765442221 123577899999999998877775443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=7.1 Score=32.47 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 129 (291)
+++++|=.|+ +|..+..+++.+ .+.+|++++.+++......+.....+ .++.++.+|+.+... . +
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678886665 455555554432 27899999988876665555444333 268888999987431 0 3
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
+.|+|+.+..
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6898887653
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.97 E-value=6.3 Score=35.93 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=60.9
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccC----CccC
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~----~~~~ 128 (291)
.....++.+||=.|+| .|..+..+++.. +++ ++.+|.+++..+.+++ .|.+ .+... +..+ ....
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCC
Confidence 3456778888888886 455666677665 555 6667888876555543 3442 12111 1111 1111
Q ss_pred CCccEEEEcccccc-------c-ccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEH-------M-KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~-------~-~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..+|+|+-.---.. . .+....++...+.+++||.+++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 45888875332210 0 1223578888899999999887554
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.2 Score=37.67 Aligned_cols=96 Identities=17% Similarity=0.354 Sum_probs=58.2
Q ss_pred CCCCC--CEEEEEcC--CcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCC---ccCCC
Q 022864 60 RLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTF---EMEAS 130 (291)
Q Consensus 60 ~~~~~--~~vLDiGc--G~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~---~~~~~ 130 (291)
...++ .+||=.|+ |.|..+..+++.. ++ +|++++.+++..+.+++. .|.+.+ .....++.+. ..+..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~g 224 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEG 224 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCC
Confidence 34544 89998885 5778888888776 77 899999988865555432 344221 1111111110 01146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+... .. ..+....++|+++|.++..
T Consensus 225 vd~vid~~-----g~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 225 VDVYFDNV-----GG--EISDTVISQMNENSHIILC 253 (345)
T ss_pred ceEEEECC-----Cc--HHHHHHHHHhccCCEEEEE
Confidence 88887531 11 1356778899999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=6.8 Score=37.49 Aligned_cols=79 Identities=10% Similarity=0.146 Sum_probs=49.6
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHh-----CC---CCeEEEEccccCCcc-
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVL-----EL---QNVEIIVADISTFEM- 127 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~---~~v~~~~~d~~~~~~- 127 (291)
.+...+.+||-.|+ +|.++..+++.+ .|.+|++++.+........+..... +. .++.++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34456778887776 455555554432 3789999998887655443333221 11 258889999987431
Q ss_pred --C-CCccEEEEcc
Q 022864 128 --E-ASYDRIYSIE 138 (291)
Q Consensus 128 --~-~~~D~i~~~~ 138 (291)
. +..|+||++.
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 1 5689988764
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=5.7 Score=36.58 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..+.+|+=+|+|. |......++.. +++|+.+|.++.....+ ...|. .+ .++.+.. ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A----~~~G~---~v--~~l~eal--~~aDVVI~aT-- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQA----AMDGF---RV--MTMEEAA--ELGDIFVTAT-- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHH----HhcCC---Ee--cCHHHHH--hCCCEEEECC--
Confidence 3789999999985 33333334444 78999999988743222 12232 22 2222221 4689998742
Q ss_pred cccccHHHHHH-HHHhccccCeeEEEEe
Q 022864 141 EHMKNYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 167 (291)
....++. .....+|+|++++...
T Consensus 276 ----G~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 276 ----GNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ----CCHHHHHHHHHhcCCCCCEEEEcC
Confidence 2233554 6788899999887643
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=87.37 E-value=9.7 Score=33.49 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=50.3
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
..++.+|+-+|+|. |.............+|+.++.+++... +.+...+. .... ..+.... ..+|+|++.-
T Consensus 175 ~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~---~la~~~g~---~~~~--~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 175 NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE---ELAKELGG---NAVP--LDELLELLNEADVVISAT 246 (311)
T ss_pred CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH---HHHHHcCC---eEEe--HHHHHHHHhcCCEEEECC
Confidence 34689999999974 333222222222468999999876432 22223332 2222 1122111 5689999876
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.-.+. ...+..+....+.++.+++...
T Consensus 247 ~~~~~---~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHY---AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCch---HHHHHHHHhhCCCCCeEEEEeC
Confidence 65433 3334444333333556666443
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=87.35 E-value=10 Score=33.13 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=57.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
......++.+||=.||| .|..+..+++.. +.++++++.+++..+.++ ..|.+ .++. .... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~----~~g~~--~~~~--~~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAR----ELGAD--WAGD--SDDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHH----HhCCc--EEec--cCcc-CCCcccEEE
Confidence 34456778888888776 334445555554 789999998887555443 33431 1111 1111 224588877
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..... ...++.+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAPV------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCCc------HHHHHHHHHHhhcCCEEEEEc
Confidence 53211 246788899999999988643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=87.26 E-value=8.1 Score=32.86 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=53.8
Q ss_pred cCCCCCCEEEEEcCCcch----HHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccE
Q 022864 59 SRLEDGHTVLDVGCGWGS----LSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 133 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~----~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 133 (291)
+..+.++|||-+|.|+-. -+..|.+-+| ++-++-.|+..-. . +.-..+.+|...+..+.++|+
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v--------S----Da~~~~~~Dc~t~~~~~k~Dl 124 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV--------S----DADQSIVGDCRTYMPPDKFDL 124 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEESS-EEE
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc--------c----ccCCceeccccccCCCCcccE
Confidence 345789999999998532 3455555564 5667777874431 1 123456799999888899999
Q ss_pred EEEccc---cccc--------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEM---FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~---l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|..- ...+ .-..-+..-++..|+=||.+++-..
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 999643 1111 1123455667788999999998665
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=87.12 E-value=4.2 Score=37.20 Aligned_cols=100 Identities=10% Similarity=0.127 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEc-CC-cchHHHHHHHHCC-C-CEEEEEcCCHHHHHHHHHHHHHh----CCCCeEEEEc----cccC--
Q 022864 59 SRLEDGHTVLDVG-CG-WGSLSLYIAQKYS-N-CKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVA----DIST-- 124 (291)
Q Consensus 59 ~~~~~~~~vLDiG-cG-~G~~~~~la~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~----d~~~-- 124 (291)
...+++.+||=+| +| .|..+..+++... + .+|+++|.+++.++.+++..... |. ...++.. ++..
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATL 249 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHH
Confidence 4557788999887 34 6777777777641 2 37999999999887776642111 21 1111211 1111
Q ss_pred --CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 --FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
......+|+|+.... ....+....+.++++|.+++
T Consensus 250 ~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 250 MELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEE
Confidence 111146888876321 13467778888998887655
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=15 Score=30.56 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------- 128 (291)
.+.++|-.|+. |.++..+++.+ .+.+|++++.+.. ..+......+..+. ++.++.+|+.+...-
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35688888864 34444444332 3778988876532 23333333333332 578888998874310
Q ss_pred CCccEEEEccccccc-------------ccHHHHHHHHHhccccCeeEEEE
Q 022864 129 ASYDRIYSIEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..|+++.+...... .....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 357888766532110 11345677777777666765554
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.97 E-value=9.8 Score=32.19 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=78.1
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----CccCCCccEEEEcccccc
Q 022864 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~D~i~~~~~l~~ 142 (291)
|..-||+-.++..+.+. .-++.++++-|+-....++++. +..++.+..+|-.. ++++++=-+|+...+++-
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 88999999888888765 6789999999998888887775 33489999988754 344466789999999998
Q ss_pred cccHHHHHHHHHhccc--cCeeEEEEeec
Q 022864 143 MKNYQNLLKKISKWMK--EDTLLFVHHFC 169 (291)
Q Consensus 143 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~~ 169 (291)
-.+++.+++.+.+.++ ++|+..+=-|.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 8899998888888887 68877764443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.96 E-value=5 Score=35.52 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=60.1
Q ss_pred CCEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hCC------CCeEEEEccccCCccC
Q 022864 64 GHTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL------QNVEIIVADISTFEME 128 (291)
Q Consensus 64 ~~~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~------~~v~~~~~d~~~~~~~ 128 (291)
-.+|-=||+|+= .++..++.. |.+|+..|.+++.++.++..... .++ .++.+. .++.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a--v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC--V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH--h
Confidence 357889999853 344445544 89999999999987766553321 221 122222 122111 1
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...|+|+-+ +.+.+.-...+++++.+.++|+.+|...+
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 567888764 44444455778999999999988554433
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.79 E-value=9.7 Score=33.04 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=57.8
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC----------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~ 125 (291)
.+|.=||+|.-+ ++..++.. +.+|+.+|.+++.++.+.+..... +. .++.+. .|....
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh
Confidence 578889998543 44444443 789999999999888765433221 21 123322 233221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...|+|+..- .+...-...+++.+...++|+..++..+
T Consensus 82 ---~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 82 ---ADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred ---cCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 4678888752 2121224567888989999988765433
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=10 Score=32.72 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCccC----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------- 128 (291)
.++++|-.|++.|. ++..++++ +.+|+.++.++. ..+.........+. ++.++.+|+.+...-
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888865432 33344443 789998887642 23333333333332 678889998774310
Q ss_pred -CCccEEEEcccccc----cc----------------cHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEH----MK----------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~----~~----------------~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...|+|+.+..... +. ....+++.+.+.++++|.+++..
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 36798886543211 10 12235555666667777766544
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=86.77 E-value=2 Score=37.98 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=58.2
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCCc
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~----~~~~~~~ 131 (291)
....++.+||-.|+| .|..+..+++.. +. .+++++.++...+.+++ .+.+. +.....++.+ ......+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 345678899998876 467777778776 64 78888887766554443 23211 1111111111 1112568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+....- ...+....+.|+++|.++..
T Consensus 238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 988753211 24677788899999987754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=0.71 Score=38.69 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=34.9
Q ss_pred EEEEccccCC--ccC-CCccEEEEcccccc---------c------ccHHHHHHHHHhccccCeeEEEE
Q 022864 116 EIIVADISTF--EME-ASYDRIYSIEMFEH---------M------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 116 ~~~~~d~~~~--~~~-~~~D~i~~~~~l~~---------~------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+++++|..+. ..+ +++|+|+...+..- + .-....+.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4567777654 223 78888888876631 0 11346889999999999988763
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.5 Score=36.56 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCcc-CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEM-EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~-~~~~D~i~~~~ 138 (291)
.++.+||-.|+| .|..+..+++.. +++|++++.+++.. .+.++..|.+. ++. .+...... ...+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~---~~~a~~lGa~~--~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKE---REAIDRLGADS--FLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHh---HHHHHhCCCcE--EEcCcCHHHHHHhhCCCcEEEECC
Confidence 478899999886 456667777766 78899998876531 12223344421 111 11111100 13478777532
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.....+....+.|++||.++...
T Consensus 251 ------G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 ------SAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ------CcHHHHHHHHHhhcCCCEEEEEc
Confidence 11335677788999999987643
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=4.4 Score=35.52 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=56.1
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccccCCccCCCccEEEEc
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
++|+=+|+|. |. ++..|++. +..|+.++-+++.++..++ +.|+ ................+++|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 5899999983 44 56666654 7789999988765544433 1232 0000101111111112578988774
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
-=- .+....++.+...+.++..++...-+
T Consensus 78 vK~---~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 78 CKA---YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred CCH---HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 322 24567888899999999876654433
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=85.94 E-value=6.8 Score=34.51 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCcc-CCCccEE
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEM-EASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-~~~~D~i 134 (291)
.+...++.+||=.||| .|..+..+++.. +.+++.++.+++..+.++ +.|.+. +.....+...... ...+|++
T Consensus 158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~d~v 232 (333)
T cd08296 158 NSGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLAR----KLGAHHYIDTSKEDVAEALQELGGAKLI 232 (333)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HcCCcEEecCCCccHHHHHHhcCCCCEE
Confidence 3456778899999975 455666666665 789999999887655553 234321 1111111111000 1347888
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.... ....+....+.|+++|.++...
T Consensus 233 i~~~g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 LATAP------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EECCC------chHHHHHHHHHcccCCEEEEEe
Confidence 75311 1346777888999999987644
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.85 E-value=7.9 Score=38.09 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
++++||=.|++ |.++..+++.+ .+.+|+++|.++...+.+.+..... .++.++.+|+.+... .+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888764 33333333321 2789999999988765554433322 367888888876421 13
Q ss_pred CccEEEEcccccccc-------------------cHHHHHHHHHhcccc---CeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMK-------------------NYQNLLKKISKWMKE---DTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~-------------------~~~~~l~~~~~~Lkp---gG~l~~~~ 167 (291)
..|+|+.+....... ....+++.+.+.+++ +|.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 689998876432210 023455666666665 57666644
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.76 E-value=3.4 Score=36.67 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~----~~~~~ 129 (291)
......++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++ .|.+. +.....++.+ .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCC
Confidence 44556778899988865 455666667665 67 89999988887665543 34321 1111111111 11113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+-.... ...++.+.+.|+++|.++...
T Consensus 241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEc
Confidence 48988864221 235677888999999977643
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.53 E-value=7.8 Score=33.65 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=61.7
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hCC----------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~----------~~v~~~~~d~~~~ 125 (291)
.+|-=||+|+=+ ++..++.. |.+|+.+|.+++.++.+.+++.+ .|. .++++ ..|+...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh
Confidence 478889998533 44444443 89999999999998887665432 111 12222 2333221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeec
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~ 169 (291)
...|+|+-. +.+..+-...++..+.+.+ +|+.++...+..
T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 567888765 4555555667888888888 777776554444
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=14 Score=30.73 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
.++++|=.| |+|.++..+++.+ .+.+|++++.++...+.........+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788777 4455555555432 37899999988765554444443322 256778889887531 0 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999986653
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.44 E-value=16 Score=32.58 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~ 139 (291)
.++.+||-.|+| .|..+..+++.. ++++++++.+++....+. +..|.+.+ +...+...+. ....+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~---~~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEAL---EHLGADDY-LVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH---HhcCCcEE-ecCCChHHHHHhcCCCcEEEECCC
Confidence 578899888775 466667777665 788888888776443332 22343211 1111111110 0134777764311
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+..+.+.|+++|+++...
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEEC
Confidence 1245677788999999987643
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.43 E-value=8.9 Score=33.99 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc----CCccCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~----~~~~~~ 129 (291)
.....+++.+||=.|+| .|..+..+++.. +. .++++|.+++..+.+++ .|.+.+ .....+.. ......
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCC
Confidence 34456788899999876 456667777665 66 69999998876655543 343211 11111111 111114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+.... ....+..+.+.|+++|+++..
T Consensus 235 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 6898875321 134677888899999988754
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.03 E-value=12 Score=33.80 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc---cc----cCCccCC
Q 022864 60 RLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVA---DI----STFEMEA 129 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~---d~----~~~~~~~ 129 (291)
...++.+||=.|+| .|..+..+++.. ++ +|++++.+++..+.++ ..|.+.+ ..... +. .......
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHhcCCC
Confidence 56678899888875 344556666665 66 7999998887443333 3444221 11110 11 1111124
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+... ......+..+.+.|+++|+++...
T Consensus 275 gvDvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEAA-----GAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEECC-----CCcHHHHHHHHHHHHcCCEEEEEC
Confidence 689887541 222456777788899999987643
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.93 E-value=6.9 Score=33.75 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=50.6
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022864 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
+|.=||+|. |.++..|.+. +.+|+++|.+++..+.+.+ .+. +.....+.. .....|+|+..-+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~----~g~--~~~~~~~~~---~~~~aDlVilavp~~~- 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE----RGL--VDEASTDLS---LLKDCDLVILALPIGL- 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CCC--cccccCCHh---HhcCCCEEEEcCCHHH-
Confidence 567788874 4455666554 7799999999987655543 232 111111211 1156799988765433
Q ss_pred ccHHHHHHHHHhccccCeeE
Q 022864 144 KNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~l 163 (291)
..++++.+...++|+.++
T Consensus 70 --~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 --LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --HHHHHHHHHHhCCCCcEE
Confidence 345677787778776443
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=84.77 E-value=22 Score=32.20 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=63.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchH----HHHHHHHC---CCCEEEEEcC----CHHHHHHHHHHH----HHhCCCCeEEEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSL----SLYIAQKY---SNCKITGICN----SKTQKEFIEEQC----RVLELQNVEIIV 119 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~----~~~la~~~---~~~~v~~vD~----s~~~~~~a~~~~----~~~~~~~v~~~~ 119 (291)
+++.+...+..+|+|+|.|.|.- ...|+.+- |..++|+|+. +...++.+.++. +..|+ ..+|..
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~ 180 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHP 180 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEe
Confidence 44444455678999999999963 34444432 3469999999 777777666654 33455 355544
Q ss_pred c---cccCCccC----CCccEE--EEcccccccc-------c-HHHHHHHHHhccccCeeEEEEe
Q 022864 120 A---DISTFEME----ASYDRI--YSIEMFEHMK-------N-YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 120 ~---d~~~~~~~----~~~D~i--~~~~~l~~~~-------~-~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. +++++... .+=+.+ -|...++++. + ...+|+.+ +.|+|.-++++..
T Consensus 181 v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ 244 (374)
T PF03514_consen 181 VVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQ 244 (374)
T ss_pred cccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEee
Confidence 2 33333211 222233 3444567763 1 23355554 4689997666543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.70 E-value=3 Score=36.56 Aligned_cols=100 Identities=23% Similarity=0.212 Sum_probs=58.8
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEE-EccccCCccCCCccEEE
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEII-VADISTFEMEASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~-~~d~~~~~~~~~~D~i~ 135 (291)
.+..||++|-=+|.| -|.++..+++.. +.+|+++|-+..--+ +.++..|.+. +.+. ..|+-.-. ....|.++
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kke---ea~~~LGAd~fv~~~~d~d~~~~~-~~~~dg~~ 251 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKE---EAIKSLGADVFVDSTEDPDIMKAI-MKTTDGGI 251 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHH---HHHHhcCcceeEEecCCHHHHHHH-HHhhcCcc
Confidence 355688888777754 799999999887 899999999875433 3334445431 1111 11111100 03334333
Q ss_pred Ecc-cccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 136 SIE-MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~-~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-.- .+ ....++.+...||++|.+++...
T Consensus 252 ~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 252 DTVSNL-----AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred eeeeec-----cccchHHHHHHhhcCCEEEEEeC
Confidence 211 11 13346667889999999887554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=84.64 E-value=5.5 Score=31.10 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=55.5
Q ss_pred EEEEEcCCcchHHH--HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-C------CCeEEEEccccCCccCCCccEEEE
Q 022864 66 TVLDVGCGWGSLSL--YIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-L------QNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 66 ~vLDiGcG~G~~~~--~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~------~~v~~~~~d~~~~~~~~~~D~i~~ 136 (291)
+|.=||+|.++.+. .++.+ +.+|+....+++.++..++.-.... + +++.+ ..|+.+.. ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEe
Confidence 46678888766433 33333 7899999999988777665432111 1 12332 23333211 56798887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.-+-. ..+.+++++...++++-.+++.
T Consensus 76 avPs~---~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 76 AVPSQ---AHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -S-GG---GHHHHHHHHTTTSHTT-EEEET
T ss_pred cccHH---HHHHHHHHHhhccCCCCEEEEe
Confidence 55443 4578899999999887777663
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.63 E-value=17 Score=31.04 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=57.3
Q ss_pred EEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C-CCccEE
Q 022864 66 TVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-ASYDRI 134 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-~~~D~i 134 (291)
.+|=-|+ |.++..+++.+ .+.+|+.++.++..++...+..+..+. ++.++.+|+.+... . +..|++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555554 45666666543 378999999987766555544444333 67788889877421 1 468998
Q ss_pred EEccccccc-ccH-----------HHHHHHHHhccccCeeEEE
Q 022864 135 YSIEMFEHM-KNY-----------QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 135 ~~~~~l~~~-~~~-----------~~~l~~~~~~LkpgG~l~~ 165 (291)
+.+...... .+. -.+++.+.+.++++|.+++
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 887654321 111 2245555566666665433
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.53 E-value=1.4 Score=36.43 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~ 106 (291)
.+++++++.+...++...+|.--|.|+.+..+.++.+...+++.|-+|-..+.+...
T Consensus 30 Vm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~ 86 (303)
T KOG2782|consen 30 VMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFH 86 (303)
T ss_pred eehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHh
Confidence 367788888888899999999999999999999999889999999999876666543
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=16 Score=30.94 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|-.|++. +.++..+++.+ .+++|+.++.+....+..++......-.++.++.+|+.+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467899999763 55555555432 378898886543222222222222211367788899887421 1
Q ss_pred CCccEEEEccc
Q 022864 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~i~~~~~ 139 (291)
++.|+++.+..
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 56898887653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=14 Score=31.24 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
.+.++|=.|++. .++..+++.+ .+.+|+.++.+++..+...+ ..+ .++.++.+|+.+... -+
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 356888888644 4444443321 27899999988765433322 222 267888999987531 04
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6798887654
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=83.70 E-value=14 Score=32.55 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=56.9
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccc----cCCccCCCc
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADI----STFEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~~~~~~~~ 131 (291)
....++.+||=.|+| .|..+..+++.. + .+|++++.++...+.++ ..|.+. +.....+. ........+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLY-SPSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDAIEQVLELTDGRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCCceeccccccHHHHHHHHhCCCCC
Confidence 345678888877775 344555566665 6 78999998887655444 234321 12211121 111112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+... .. ...+..+.+.|+++|.++..
T Consensus 237 d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 237 DVVIEAV-----GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CEEEECC-----CC-HHHHHHHHHhccCCcEEEEe
Confidence 9887542 11 33577788999999998754
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed | Back alignment and domain information |
|---|
Probab=83.61 E-value=5.4 Score=28.96 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=48.2
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEcccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEMFEH 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~ 142 (291)
+|| +-||.|..+..++++ .++.+++.|+ .+.+...+..+.... ..+|+|++.
T Consensus 3 kIL-lvCg~G~STSlla~k------------------~k~~~~e~gi-~~~i~a~~~~e~~~~~~~~~~DvIll~----- 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK------------------TTEYLKEQGK-DIEVDAITATEGEKAIAAAEYDLYLVS----- 57 (104)
T ss_pred EEE-EECCCchHHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhhccCCCCEEEEC-----
Confidence 455 669999877777655 4566667777 577777777665422 468999987
Q ss_pred cccHHHHHHHHHhccccCeeEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
++..-.++.+...+.+.|.-+
T Consensus 58 -PQi~~~~~~i~~~~~~~~ipv 78 (104)
T PRK09590 58 -PQTKMYFKQFEEAGAKVGKPV 78 (104)
T ss_pred -hHHHHHHHHHHHHhhhcCCCE
Confidence 344455666777776655533
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=13 Score=31.22 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=46.1
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-CCc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-ASY 131 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~~~ 131 (291)
.+||-.|+ +|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+... . +..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46776664 455555554332 378999999988766555544444332 68888899877431 0 367
Q ss_pred cEEEEccc
Q 022864 132 DRIYSIEM 139 (291)
Q Consensus 132 D~i~~~~~ 139 (291)
|.|+.+..
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 99987754
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.47 E-value=8.2 Score=32.14 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
++.++|-.|++ |.++..+++.+ .+.+|+.++.++...+.+.+.....+. ++.++.+|+.+... . +
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 36788988863 44444443321 278999999988766655555544443 67888888876321 0 3
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
+.|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5799987653
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.46 E-value=5.9 Score=34.32 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
...+..++.. ...++..|||.-+|+|..+....+. +-.+.|+|+++..++.+.++....
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 3445555554 5678999999999999998887765 779999999999999999887654
|
|
| >KOG2811 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.45 E-value=4.6 Score=36.04 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEE---EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITG---ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
++..++++|||-|.++.+++...+...++. +|-...-+..=......+.+ .+.-+..|++++.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~-vi~R~riDI~dLk 247 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSL-VIKRIRIDIEDLK 247 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcc-hhheeEeeHHhcC
Confidence 346899999999999999998876666666 77655443332222222212 3445566776653
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=83.25 E-value=2.3 Score=36.07 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
++..+++.++..+..+++|+-||+|..+..+... +.+|+.-|+++..+...+..++.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHHHHHhc
Confidence 4556666665436789999999999999988763 78999999999988877755443
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.23 E-value=7.4 Score=33.73 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=57.1
Q ss_pred EEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---CC--------------CCeEEEEccccCCc
Q 022864 66 TVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---EL--------------QNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~--------------~~v~~~~~d~~~~~ 126 (291)
+|.=||+|.= .++..+++. +.+|+.+|.+++.++.+.+..... +. .++.+ ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh-
Confidence 6788888842 344444544 789999999999988876543211 10 01222 1222221
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-...|+|+..-+ +...-...++..+.+.++|+.++.+.+.
T Consensus 79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 156798886532 2222235677888888888876655443
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.08 E-value=11 Score=31.49 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~ 127 (291)
.++++||=.|+ +|.++..+++.+ .+.+|++++.++...+...+.....+..++.++.+|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 35778998885 455544444332 27899999998876665555554444345677777775321 1
Q ss_pred C-CCccEEEEccc
Q 022864 128 E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ~-~~~D~i~~~~~ 139 (291)
. ++.|.|+.+..
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 1 46899887653
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.04 E-value=18 Score=31.58 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC----CCccEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME----ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~----~~~D~i~ 135 (291)
.+++||-.| |+|..+..+++.+ .+.+|+++..++.............+. +++.++.+|+.+...- ...|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 367888887 4566666666542 377887776555433222221111122 3688899999875311 4679888
Q ss_pred Eccc
Q 022864 136 SIEM 139 (291)
Q Consensus 136 ~~~~ 139 (291)
.+..
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7664
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.87 E-value=9.4 Score=33.41 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=51.1
Q ss_pred CCEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 64 GHTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
..+|.=||+|.- .++..+.+.....+|+++|.+++..+.++ ..+. ... ...+..+. ....|+|+..-...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~-~~~-~~~~~~~~--~~~aDvViiavp~~ 77 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGL-GDR-VTTSAAEA--VKGADLVILCVPVG 77 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCC-Cce-ecCCHHHH--hcCCCEEEECCCHH
Confidence 358889998852 34444443321248999999998655443 3333 111 11222111 15679998876543
Q ss_pred ccccHHHHHHHHHhccccCeeEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
. ...+++.+...+++|+.++
T Consensus 78 ~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 A---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred H---HHHHHHHHHhhCCCCCEEE
Confidence 2 3456667777788877543
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=82.78 E-value=5.1 Score=38.76 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=56.0
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~~~ 137 (291)
.+|+=+|+| .++..+++.. .+.+++.+|.+++.++.+++ . ....+.+|..+.. .. ++.|++++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 456666655 4444444321 27799999999998776653 2 3568899998853 11 678887774
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..- - +....+-...+.+.|...++...-
T Consensus 472 ~~d--~-~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 472 CNE--P-EDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred eCC--H-HHHHHHHHHHHHHCCCCeEEEEeC
Confidence 222 1 112233334455778888776544
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=19 Score=30.33 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------CC
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~~ 129 (291)
++.++|=.|++.|. ++..++++ |.+|++++.+++..+...... ..+ .++.++.+|+.+... .+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35678888866432 34444444 789999999887665554433 122 368888899887531 13
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
..|.++.+...
T Consensus 80 ~id~lv~~ag~ 90 (263)
T PRK09072 80 GINVLINNAGV 90 (263)
T ss_pred CCCEEEECCCC
Confidence 57999887544
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.67 E-value=14 Score=32.54 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=56.9
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccCCCccEEE
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~D~i~ 135 (291)
.+...++.+||=.||| .|..+..+++.. +.++++++.+++..+.+++ .+.+.+ .....+... .....+|+|+
T Consensus 164 ~~~~~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~-~~~~~~d~v~ 237 (337)
T cd05283 164 RNGVGPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALK----LGADEFIATKDPEAMK-KAAGSLDLII 237 (337)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEecCcchhhhh-hccCCceEEE
Confidence 3456677888888874 455556666665 7899999998886655532 333211 000111100 1125688887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....- ...+..+.+.|+++|.++...
T Consensus 238 ~~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 238 DTVSA------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred ECCCC------cchHHHHHHHhcCCCEEEEEe
Confidence 53221 123566778889999887643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=26 Score=30.34 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH--HHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++ |.++..+++.+ .+.+|+.+..+.+ ..+...+.....+. ++.++.+|+.+... .
T Consensus 54 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 45788888864 44444444332 2778887765432 22223333333333 57788899887421 0
Q ss_pred -CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEE
Q 022864 129 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~i~~~~~l~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..|+++.+..... + ++ .-.+++.+.+.++++|.+++.
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 46899998765321 1 11 123556666777788876654
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=21 Score=32.53 Aligned_cols=100 Identities=8% Similarity=0.142 Sum_probs=51.7
Q ss_pred EEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---hCC------CCeEEEE-ccccCCccCCCccEE
Q 022864 66 TVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LEL------QNVEIIV-ADISTFEMEASYDRI 134 (291)
Q Consensus 66 ~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~------~~v~~~~-~d~~~~~~~~~~D~i 134 (291)
+|-=+|.| .|.....+... +.+|+++|.+++.++.+++.... .++ .+..+.. .|..+. ....|+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~--~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA--YRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh--hcCCCEE
Confidence 56667888 34332233323 68999999999988777652100 000 0112211 111111 1456888
Q ss_pred EEccccc--------ccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFE--------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..-+-. .+.....+++.+.+ ++||..+++.+..+
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 7654321 11234556677777 67777666554443
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.48 E-value=4.2 Score=36.45 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---cc----CCccC
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---IS----TFEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~----~~~~~ 128 (291)
.....++.+||-.|+|. |..+..+++.. +. .++++|.++...+.+++ .+.+ .++..+ .. ... .
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~-~ 252 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREIT-G 252 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHh-C
Confidence 34556788999988763 66677777766 66 69999998886655433 3331 111111 10 111 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|+|+-.-.- ...+..+.+.|+++|.++...
T Consensus 253 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 458888754211 235677888899999987643
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.42 E-value=23 Score=29.88 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCcc-hHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022864 63 DGHTVLDVGCGWG-SLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G-~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 128 (291)
.++++|-.|+++| +++..+++.+ .+++|+.++.+....+.+.+...+. +.+.++.+|+.+.. ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHHc
Confidence 4678999998762 5555444432 2789988888765433333333222 23456778887642 11
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+..+
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 568999887643
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.30 E-value=5.3 Score=35.76 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=59.3
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cc----cCCccC
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DI----STFEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~----~~~~~~ 128 (291)
.....++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.++ ..|.. .++.. +. ......
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~~~~ 249 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDLTDG 249 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHHcCC
Confidence 3455678899988875 466777777765 665 999998888665543 23331 11111 11 111112
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|+++....- ...+..+.+.|+++|+++...
T Consensus 250 ~~vd~vld~~~~------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 250 RGADYAFEAVGR------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCEEEEcCCC------hHHHHHHHHHhhcCCeEEEEe
Confidence 458988753211 245677888899999987643
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=82.28 E-value=2.5 Score=39.07 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEE------EEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKIT------GICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~------~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~ 136 (291)
.+++|+=||||+=+.+..+--+-.|.+|+ ++|.+.... +++...|. ...+..+.. ...|+|++
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~----~kA~~dGF-----~v~~~~Ea~--~~ADvVvi 103 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASW----RKATENGF-----KVGTYEELI--PQADLVIN 103 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchH----HHHHhcCC-----ccCCHHHHH--HhCCEEEE
Confidence 57899999999644433221111245555 445445533 33333444 123333321 57899999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+.. ....+.+.+...||||..|.++
T Consensus 104 LlPDt---~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 104 LTPDK---QHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred cCChH---HHHHHHHHHHhhCCCCCEEEec
Confidence 87765 2556679999999999999884
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.17 E-value=12 Score=32.35 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=56.1
Q ss_pred CEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----------CC----------CCeEEEEccc
Q 022864 65 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----------EL----------QNVEIIVADI 122 (291)
Q Consensus 65 ~~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~v~~~~~d~ 122 (291)
.+|.=||+|.= .++..++.. +.+|+.+|.+++.++.+++..... +. .++.+. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 47888999843 244445544 789999999999988765543321 11 011221 222
Q ss_pred cCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022864 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 123 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.. -...|+|+..- .+.......+++++.+.++|+..++
T Consensus 81 ~~---~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ES---LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH---hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 14578888752 2233335678888888888887654
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=81.37 E-value=1.7 Score=34.79 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.+.+|.=+|+| .|......++.+ +.+|+++|.+..... ..... .+ ...++.++. ...|+|+..-++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~----~~~~~---~~--~~~~l~ell--~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEE----GADEF---GV--EYVSLDELL--AQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHH----HHHHT---TE--EESSHHHHH--HH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhh----hcccc---cc--eeeehhhhc--chhhhhhhhhccc
Confidence 58899999997 355444444456 899999999988543 12121 12 333444432 4579998876652
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.- ...-+=++....+|+|.+|+-
T Consensus 103 ~~-T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 103 PE-TRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp TT-TTTSBSHHHHHTSTTTEEEEE
T ss_pred cc-cceeeeeeeeeccccceEEEe
Confidence 11 111122335677888886643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=81.37 E-value=4 Score=38.03 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
-.+++|+=+|+|. |......+..+ +++|+++|.++.....+. ..|. .+ .++.+.. ...|+|++...
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~----~~G~---~~--~~leell--~~ADIVI~atG- 318 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF-GARVVVTEIDPICALQAA----MEGY---QV--VTLEDVV--ETADIFVTATG- 318 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHH----hcCc---ee--ccHHHHH--hcCCEEEECCC-
Confidence 3689999999995 33333333334 789999988876432221 1232 22 2333321 56899987532
Q ss_pred cccccHHHHH-HHHHhccccCeeEEEEee
Q 022864 141 EHMKNYQNLL-KKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 168 (291)
...++ ......+|||++++-...
T Consensus 319 -----t~~iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 319 -----NKDIITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred -----cccccCHHHHhccCCCcEEEEcCC
Confidence 22344 367788999999876543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.07 E-value=17 Score=31.27 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=58.1
Q ss_pred CEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-------HHhCC----------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~----------~~v~~~~~d~~~~ 125 (291)
.+|.=||+|. +.++..++.. +.+|+++|.+++.++.+++.+ .+.+. .++.+ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3678889984 3455555544 779999999999887655322 22221 12222 233222
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
-...|+|+..- -+.+.-...+++++.+.++|+..+...+
T Consensus 80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 15678888752 2222334578999999999988774433
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.01 E-value=28 Score=32.04 Aligned_cols=94 Identities=12% Similarity=0.118 Sum_probs=55.0
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---------------HHHhCCCCeEEEEccccCCcc
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQ---------------CRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~---------------~~~~~~~~v~~~~~d~~~~~~ 127 (291)
++|.=||.|.-+ ++..|++. |.+|+++|.+++.++..+.. ....| ++.+. .+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~------ 72 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TT------ 72 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-cc------
Confidence 578888988544 44445554 78999999999977653210 00011 11111 01
Q ss_pred CCCccEEEEccccc-------ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 128 EASYDRIYSIEMFE-------HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~i~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+..|+|+..-.-. .+......++.+.+.|++|..+++.+..
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 13578887654432 2234456678888889888776665443
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=12 Score=31.38 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------C-CCccE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~D~ 133 (291)
.++++|=.|++.| ++..+++.+ .+++|++++.+++..+.+.+........++.++.+|+.+... . ++.|+
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 3578888887543 444443321 278999999988776655554443322367888888876421 1 56899
Q ss_pred EEEccc
Q 022864 134 IYSIEM 139 (291)
Q Consensus 134 i~~~~~ 139 (291)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 887653
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=80.79 E-value=15 Score=36.44 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=66.4
Q ss_pred CCEEEEEcCCcchHHH--HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccC
Q 022864 64 GHTVLDVGCGWGSLSL--YIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADIST 124 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~--~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~ 124 (291)
-.+|--||+|+=+.++ .++.. |.+|+.+|.+++.++.+++++... + +.+++.. .|+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 3478899999654443 44433 899999999999988877655321 1 1123332 22221
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+ ...|+|+=. +.+.++-..+++.++-+.++|+.+|.-.+.+
T Consensus 390 ~---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 390 F---DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred h---cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 567887754 6666767789999999999999887665444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.79 E-value=14 Score=30.53 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------------- 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------------- 126 (291)
+++++|=.||+ |.++..+++.+ .+.+|++++.++...+...+.+...+...+.++..|+.+..
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 35689999864 44444444332 37899999998876665555444333224556667765321
Q ss_pred cCCCccEEEEccc
Q 022864 127 MEASYDRIYSIEM 139 (291)
Q Consensus 127 ~~~~~D~i~~~~~ 139 (291)
.....|.|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0035688886654
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.70 E-value=6.8 Score=34.60 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc---cCCccCCCccEE
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI---STFEMEASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~---~~~~~~~~~D~i 134 (291)
..++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.++ ..|.+.+ .....+. .+....+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAK----KMGADVVINPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHHHHHHHcCCCCCCEE
Confidence 35678888887753 66777777766 66 7888877776554433 2333111 1111111 111222568988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+..-. ....+..+.+.|+++|.++...
T Consensus 236 ld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 236 LEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 86421 1335667788899999987543
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.63 E-value=6.9 Score=34.72 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=64.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc----cccCCc-
Q 022864 53 ELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DISTFE- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~~~- 126 (291)
-..+.....+++.+|.-+||| .|..++.-++.....+++++|++++-++.|++ .|. .+++.. |+-+..
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGA--T~~vn~~~~~~vv~~i~ 248 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGA--THFVNPKEVDDVVEAIV 248 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCC--ceeecchhhhhHHHHHH
Confidence 344555677899999999998 46666666666545689999999997777665 343 223322 121111
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+...|.++ +...+. ..++....++.++|..++.-..
T Consensus 249 ~~T~gG~d~~~-----e~~G~~-~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 249 ELTDGGADYAF-----ECVGNV-EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred HhcCCCCCEEE-----EccCCH-HHHHHHHHHHhcCCeEEEEecC
Confidence 113456553 233233 3667777777779987775443
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.47 E-value=13 Score=30.85 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 129 (291)
..+++|-.|+ +|.++..+++.+ .+.+|++++.++...+...+..+..+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3457888875 555555555432 37799999998876655544444333 268888999987531 0 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999876643
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.33 E-value=17 Score=35.99 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CCEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccC
Q 022864 64 GHTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADIST 124 (291)
Q Consensus 64 ~~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~ 124 (291)
-.+|.=||+|+=+ ++..++... |..|+.+|.+++.++.+.+++.+. + +.++++. .|+..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 3689999999743 344444232 899999999999988876654321 1 1233333 22221
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+ ...|+|+=. +.+.++-..++++++-+.++|+.+|.-.+.+
T Consensus 387 ~---~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 387 F---KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred h---ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 567877754 5666666788999999999999888765444
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.14 E-value=17 Score=36.00 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=65.6
Q ss_pred CEEEEEcCCcchH--HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGSL--SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~~--~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~ 125 (291)
.+|.=||+|+=+. +..++.. |.+|+.+|.+++.++.+.+++... | +.++++. .|+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 5799999998443 3444433 899999999999988776654321 1 1233332 233222
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
...|+|+=. +.+.++-..+++.++.+.++|+.+|...+.+
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 391 ---ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ---cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 567877753 5666666788999999999999887665444
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=31 Score=29.29 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCcc-hH----HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------c
Q 022864 63 DGHTVLDVGCGWG-SL----SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G-~~----~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~ 127 (291)
.++++|=.|++.| +. +..+++. +++|+.++.+....+.+.+..... +.+.++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence 4678888998752 44 4444443 788988887643222233222221 24567788887742 1
Q ss_pred C-CCccEEEEcccc
Q 022864 128 E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~-~~~D~i~~~~~l 140 (291)
. ++.|+++.+..+
T Consensus 81 ~~g~iD~linnAg~ 94 (262)
T PRK07984 81 VWPKFDGFVHSIGF 94 (262)
T ss_pred hcCCCCEEEECCcc
Confidence 1 568999987743
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 291 | ||||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 5e-18 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 8e-18 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 1e-17 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 6e-17 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 4e-15 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 9e-15 | ||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 4e-07 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 7e-07 |
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 4e-53
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 15/244 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY+L FF+L L YSC YF TL++A+ A ++L + L+ G T+LDVG
Sbjct: 13 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVG 72
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEAS 130
CGWG+ + +KY + + G+ SK Q +++ E +++A + +
Sbjct: 73 CGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE--QFDEP 129
Query: 131 YDRIYSIEMFEH--MKNYQNLLKKISKWMKEDTLLFVH--------HFCHKTFAYHFEDT 180
DRI SI FEH + Y + + D ++ +H + F
Sbjct: 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFA 189
Query: 181 NDDDWITKYFFTGGTMPS-ANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS 239
+I F GG +PS + + V HYA+T + W + N
Sbjct: 190 RFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQ 249
Query: 240 IKPI 243
+
Sbjct: 250 AIAL 253
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 3e-51
Identities = 59/252 (23%), Positives = 96/252 (38%), Gaps = 22/252 (8%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
HY+ FFKL L YSC YF TLE+A+ A +L ++ LE G T+LD+G
Sbjct: 21 RSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIG 80
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEAS 130
CGWGS + +Y + + G+ S+ Q + ++ E+ + E +
Sbjct: 81 CGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE--EFDEP 137
Query: 131 YDRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVH--------HFCHKTF 173
DRI S+ FEH + Y KK +D + +H
Sbjct: 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGL 197
Query: 174 AYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKR 232
+I F GG +P + + Y+ + V+ + G +Y T W
Sbjct: 198 TSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADA 257
Query: 233 MDNNLASIKPIM 244
+ + +
Sbjct: 258 LQAHKDEAIALK 269
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 9e-51
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 15/242 (6%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY++ FF L YSC YF TLE+A+ A ++L ++ L+ G T+LD+GCG
Sbjct: 41 HYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCG 100
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG+ +++ + + G+ SK Q E+ ++ ++++ + D
Sbjct: 101 WGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE--DFAEPVD 157
Query: 133 RIYSIEMFEH--MKNYQNLLKKISKWMKEDTLLFVH--------HFCHKTFAYHFEDTND 182
RI SIE FEH +NY + K+ M D + V + FE
Sbjct: 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARF 217
Query: 183 DDWITKYFFTGGTMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
+I F GG +PS +++ + V L HY +T W + +N
Sbjct: 218 IKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAI 277
Query: 242 PI 243
+
Sbjct: 278 EV 279
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 7e-41
Identities = 49/263 (18%), Positives = 98/263 (37%), Gaps = 26/263 (9%)
Query: 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGC 72
Q Y+ T F + G+ + + A +++DA + + + G VLDVGC
Sbjct: 11 QMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGC 70
Query: 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS--TFEMEA 129
G G ++ +A + ++TGI S+ Q + L N V AD FE +A
Sbjct: 71 GIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE-DA 128
Query: 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
S+D ++++E HM + L+++++ ++ + + F
Sbjct: 129 SFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLA-----PVEGAKKEAVDA 183
Query: 190 FFTGGTMPSANLLLYFQD--------DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
F GG + S + ++ S VD + + + +N + ++
Sbjct: 184 FRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI----SAQARPSLVKTAEAFENARSQVE 239
Query: 242 PIMESTYGKDQAVKWTVYWRTFF 264
P G + + +R
Sbjct: 240 PF----MGAEGLDRMIATFRGLA 258
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 5e-38
Identities = 29/257 (11%), Positives = 73/257 (28%), Gaps = 21/257 (8%)
Query: 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 91
++ + R++ G +LD+G G G + A+ + T
Sbjct: 7 FTISESEHR--IHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGT 63
Query: 92 GICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLL 150
GI S + + L + V I D + + D + +
Sbjct: 64 GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 123
Query: 151 KKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPS-ANLLLYFQDDV 209
+ +++ +K ++ + + ++ + + L+ F D
Sbjct: 124 ELLAQSLKPGGIMLIGEPYWRQ-----LPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 178
Query: 210 SVVDHWLVNG-----KHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWR--- 261
V ++ ++ A + ++ N ++ Y R
Sbjct: 179 YDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECF 238
Query: 262 --TFFIAVAEL-FGYNN 275
F +A L +++
Sbjct: 239 GWGVFALIARLEHHHHH 255
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-33
Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 17/242 (7%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER-SRLEDGHTVLDVGC 72
HY + + L E A E + + T++D GC
Sbjct: 70 HYGIGPVDRAALGDPEHSEYEKKVIA---ELHRLESAQAEFLMDHLGQAGPDDTLVDAGC 126
Query: 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASY 131
G G + +++ ++ G+ S Q +F + R L + + V V ++ +
Sbjct: 127 GRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML--DTPFDK 183
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
+ + E + +L + S+++K C + + + I +
Sbjct: 184 GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN--PRYGQPSKWVSQINAH 241
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS-IKPIMESTY 248
F + S L D +V H +V+ T W R ++L + I+ +Y
Sbjct: 242 FECN--IHSRREYLRAMADNRLVPHTIVD--LTPDTLPYWELRATSSLVTGIEKAFIESY 297
Query: 249 GK 250
Sbjct: 298 RD 299
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-32
Identities = 49/291 (16%), Positives = 88/291 (30%), Gaps = 40/291 (13%)
Query: 4 AIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLED 63
+ +T Q+ + ++ + G+ + + + L +
Sbjct: 9 SDKTFLENNQYTDEGVKVYEFIFGENY-------------ISSGGLEATKKILSDIELNE 55
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
VLD+G G G +YI +KY GI E RV + DI
Sbjct: 56 NSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANE--RVSGNNKIIFEANDIL 112
Query: 124 TFEME-ASYDRIYSIEMFE--HMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
T E ++D IYS + ++N L +K KW+K L + +C E
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT------EKE 166
Query: 181 NDDDWITKYFFTGG-TMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
N DD +Y T+ + + ++ Q E K + N
Sbjct: 167 NWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKE 226
Query: 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGE-EWMVTHFLFRK 288
+ + + + + W + W +F K
Sbjct: 227 EFLKL----FSEKKFISLDDGWSRK------IKDSKRKMQRWG--YFKATK 265
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-31
Identities = 41/293 (13%), Positives = 88/293 (30%), Gaps = 39/293 (13%)
Query: 12 EQHYELPTS--FFKLVLGKYFKYSCCYFSDAS-KTLEDAEKAMLELYCER----SRLEDG 64
E +Y+ S F+ V G + Y + +A E L+
Sbjct: 24 EIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQ 83
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS 123
LD+G G+G + ++ +K+ I + + Q + EE L + + +
Sbjct: 84 AKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142
Query: 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
E SYD I+S + F H + + ++ ++ +K ++ + + + ++
Sbjct: 143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE---DGIDKSSI 199
Query: 183 DDWITKYFFTGGTMPSANLLLYFQ-------DDVSVVDHWLVNGKHYAQTSEEWLKRMDN 235
+ + M S LY + + +
Sbjct: 200 QPILDRIKLHD--MGSLG--LYRSLAKECGLVTLRTFSR----PDSLVHHYSKVKAELIK 251
Query: 236 NLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ I + + + + G G+ LFRK
Sbjct: 252 RSSEIASFCSPEFQANMKRGLEHW----------IEGGRAGKLTWG-GMLFRK 293
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 4e-24
Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 14/184 (7%)
Query: 36 YFSDASKTLEDAEKAMLELYCER--------SRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87
F S ++ + + + + S + +LD+G G G LS ++ +KY
Sbjct: 9 KFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE 68
Query: 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN-- 145
T + S+ E + + R V+ I AD S ++ E YD + S H+++
Sbjct: 69 ATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDED 126
Query: 146 YQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYF 205
+ L K+ +KE + H A+ E+ N W +Y G Y
Sbjct: 127 KKELYKRSYSILKESGIFINADLVHGETAF-IENLNKTIW-RQYVENSGLTEEEIAAGYE 184
Query: 206 QDDV 209
+ +
Sbjct: 185 RSKL 188
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-19
Identities = 44/258 (17%), Positives = 95/258 (36%), Gaps = 26/258 (10%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y + L + + + +L + G VL+ GCG G+ ++ +A+ + +IT I
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDI 69
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
S E E ++NV+ + A+I + FE ++S+D I+ + EH+++ + LK +
Sbjct: 70 SPESLEKARENTEKNGIKNVKFLQANIFSLPFE-DSSFDHIFVCFVLEHLQSPEEALKSL 128
Query: 154 SKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF-----FTGGTMPSANLLLYFQD- 207
K +K + V H + +H E + G ++ + Q+
Sbjct: 129 KKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQES 188
Query: 208 ---DVSVVDHWLVNGKHYAQTSEEWLKRMDNNL-ASIKPIMESTYG--KDQAVKWTVYWR 261
+ V + + + ++ + + +K +++ K
Sbjct: 189 GFEKIRVEPRMVYIDSSKPELVDGFILKTIIPMVEGVKEQSLKMQIIKEEEWEKGIEELH 248
Query: 262 -----------TFFIAVA 268
TFF
Sbjct: 249 KTAEHGGTFCYTFFKGWG 266
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-17
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 29 YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 88
F + C YF + + +A + + L D + D+GCG G +L++A
Sbjct: 12 DFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYV-KG 70
Query: 89 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 146
+ITGI E E V+ I + + D I+S ++ +
Sbjct: 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GF 129
Query: 147 QNLLKKISKWMKEDTLLFVHHFCHKT 172
+ + + SK++K+ + V T
Sbjct: 130 ERGMNEWSKYLKKGGFIAVSEASWFT 155
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 4e-14
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
E ++ LD+GCG G SLY+A + + +E + L N+
Sbjct: 26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLH 83
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171
V D++ + YD I S + + K L+ + + K +
Sbjct: 84 TRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 140
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 4e-14
Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 36/239 (15%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ LE D+GCG G+ + + +Y ITGI + + +E+ L N
Sbjct: 27 AQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD---DDMLEKAAD--RLPNTN 81
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV---HHFCHKTF 173
AD++T++ D +Y+ +F+ + ++ +L ++ ++ +L V + T
Sbjct: 82 FGKADLATWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTH 141
Query: 174 AYHFEDTNDDDW---ITKYFFTGGTMPS----ANLLLYFQDDVSVVDHWL---VNGKHYA 223
E + W + +P N L S VD W + A
Sbjct: 142 IAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNAL---SPKSSRVDVWHTVYNHPMKDA 198
Query: 224 QTSEEWLKRM--------------DNNLASIKPIMESTYGKDQAVKWTV-YWRTFFIAV 267
+ EW+K + LA + + Y + + + R F +AV
Sbjct: 199 DSIVEWVKGTGLRPYLAAAGEENREAFLADYTRRIAAAYPPMADGRLLLRFPRLFVVAV 257
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 5e-14
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109
A+ + +++ VLD+GCG G SLY++ +T +++ F+ E
Sbjct: 107 AIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEK 164
Query: 110 LELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167
L N+ + DI+ ++ +YD I S +F + + +++K + + +
Sbjct: 165 ENL-NISTALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223
Query: 168 F 168
Sbjct: 224 A 224
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 8e-14
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 5/142 (3%)
Query: 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKI 90
++ L E+ + L G V V CGW S L + ++
Sbjct: 87 LERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQL 146
Query: 91 TGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHM---KNY 146
GI + L + + D + YD + S + +
Sbjct: 147 VGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARV 206
Query: 147 QNLLKKISKWMKEDTLLFVHHF 168
L ++ + +K L
Sbjct: 207 TELYRRFWQALKPGGALVTSFL 228
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
++ VLD+GC G+L I + +++GI E E + + +++ D
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGI-------EAFPEAAEQAKEKLDHVVLGD 81
Query: 122 ISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
I T +M E +D + ++ EH+ + +++K+ ++K++ ++
Sbjct: 82 IETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-13
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 8/152 (5%)
Query: 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106
+ + + TVLD G G L I + K GI S Q + E
Sbjct: 7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED-GYKTYGIEISDLQLKKAENF 65
Query: 107 CRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTL 162
R + I DI F+ + S +YS HM+ + + + +I + +K L
Sbjct: 66 SRENNF-KLNISKGDIRKLPFK-DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123
Query: 163 LFVHHFCHKTFAY-HFEDTNDDDWITKYFFTG 193
++ K Y E + +++
Sbjct: 124 ACINFLTTKDERYNKGEKIGEGEFLQLERGEK 155
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-12
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 17/213 (7%)
Query: 27 GKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86
+Y++ Y S+ + + L ++ VLD+ CG G S +
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLL--MKYMKKRGKVLDLACGVGGFSFLLEDY-- 59
Query: 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM-- 143
++ G+ S+ E + E NVE IV D E ++D + I+ H
Sbjct: 60 GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 118
Query: 144 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT---NDDDWITKYFFTGGTMPSAN 200
+ K++ + +K ++ + +++ WI+K P
Sbjct: 119 LELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVI------PDQE 172
Query: 201 LLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRM 233
+ S D + V + +T E L ++
Sbjct: 173 ERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKL 205
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-12
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 15/170 (8%)
Query: 36 YFSDASKTLEDAE--KAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKIT 91
+F S+ E KA E + + L D TVLD+GCG+G +Y A+ + K+
Sbjct: 13 FFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVL 71
Query: 92 GICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLL 150
GI S+ + E R V I +E +Y+ + S ++ ++ ++
Sbjct: 72 GIDLSERM---LTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDIC 128
Query: 151 KKISKWMKEDTLLF--VHHFCHKTFA----YHFEDTNDDDWITKYFFTGG 194
KK+ +K V H Y E N W +F
Sbjct: 129 KKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNES 178
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 5e-12
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
E KA+ + L + + D+GCG G ++ +A ++TG+ +
Sbjct: 32 EVTLKALSFI----DNLTEKSLIADIGCGTGGQTMVLAGHV-TGQVTGLDFLSGFIDIFN 86
Query: 105 EQCRVLELQN-VEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
R LQN V IV + F D I+S ++ ++ L + K++K+
Sbjct: 87 RNARQSGLQNRVTGIVGSMDDLPFR-NEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGG 144
Query: 162 LLFVHHFCHKTFAYHFEDTNDDDWITKY 189
L V T E +D W+ Y
Sbjct: 145 YLAVSECSWFTDERPAE--INDFWMDAY 170
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 6e-12
Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 38 SDASKTLEDAEKAMLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
+ K + + ++ + R+ +L++G G + + + IT +
Sbjct: 15 TAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH--FNDITCVEA 72
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI-S 154
S+ + + + + I + ++ YD I + EH+ + LLK+I
Sbjct: 73 SEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRIND 128
Query: 155 KWMKEDTLLFV-----HHFCHKTFAYHFEDTNDDDWITKYFFTG 193
W+ E LF+ + + +++ F G
Sbjct: 129 DWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-11
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNV 115
++ ++D GCG+G L L + K TGI + +T E R+L +
Sbjct: 16 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DS 74
Query: 116 EIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 175
E + D + E+ YD HM + +L+K+ +K+ + +
Sbjct: 75 EFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMA 134
Query: 176 HFE 178
+
Sbjct: 135 SYL 137
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 45/241 (18%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ + G +LD+GCG G L+ IAQ S ++ G N+ I E+ R ++
Sbjct: 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNA---ATMI-EKARQ-NYPHLH 103
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 176
VAD F ++ D ++S M +K + + I + +K Y
Sbjct: 104 FDVADARNFRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI 163
Query: 177 FEDTNDDDWITKYFFTGGTMPS--------ANLL----------------LYFQDDVSVV 212
E + P N+L + +
Sbjct: 164 LEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEFGM 223
Query: 213 DHWLVNGKHYAQTSEEWLKRMDNN-----LASIKPIMESTYGKDQAVKWTV-YWRTFFIA 266
+W+ + +L + + + ++ ++ + WT Y R ++
Sbjct: 224 ANWI------QMFASAFLVGLTPDQQVQLIRKVEATLQDKLYHQE--SWTADYRRIRIVS 275
Query: 267 V 267
+
Sbjct: 276 I 276
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-10
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 45 EDAEKAMLELY-------CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK 97
E A + + L + + V+D+GCG G+L + + +ITG+ S
Sbjct: 4 EAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSY 63
Query: 98 TQKEFIEEQCRVLELQ-----NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQ--NL 149
E +E+ L L +++I ++ + YD IE+ EH+ +
Sbjct: 64 RSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAF 123
Query: 150 LKKISKWMKEDTLLF 164
+ + ++ + ++
Sbjct: 124 ERVLFEFAQPKIVIV 138
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-10
Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y + ++ A A LE VL++ G G + +++ ++T +
Sbjct: 22 YDATFVPYMDSAAPAALE---RLRAGNIRGDVLELASGTGYWTRHLSGLA--DRVTALDG 76
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKI 153
S E I + L NVE D+ + + +D ++ H+ + ++ + +
Sbjct: 77 S---AEMI-AEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESV 132
Query: 154 SKWMKED-TLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGT 195
+ + FV H+ +D+ + + + G +
Sbjct: 133 RSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRS 175
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 6e-10
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-QCRVLELQNVEIIVA 120
LD G G G ++ + K + K +EE + + + + I+A
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPV---KHMLEEAKRELAGMPVGKFILA 147
Query: 121 DISTFEMEA-SYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHKTFAYHF 177
+ T + +YD I ++ + K + + + +F C +
Sbjct: 148 SMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV 207
Query: 178 EDTN 181
+ +
Sbjct: 208 DKED 211
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 9e-10
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
+ +LE +S VL+ G G G+L+ + + GI S +E
Sbjct: 32 AHYEDILEDVVNKS----FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPS---REMR-M 81
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLL 163
+ + I D +FE+ S D I S F H+ + + + K S+ + + +
Sbjct: 82 IAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKI 141
Query: 164 FVHHFCHKTFAYHFEDTND----------DDWITKYFFTGGTM 196
+ + +D T+Y+ M
Sbjct: 142 VFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 37 FSDASKTLEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 94
+ + L+ A E R+ L + G ++D+GCG+G + + ++ + G+
Sbjct: 19 LGRSIEGLDGA----AEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGAS-YVLGLD 73
Query: 95 NSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQNLLKKI 153
S+ + + AD+ + + S+D YS ++++ L + +
Sbjct: 74 LSEKM---LARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTV 130
Query: 154 SKWMKED-TLLFVHHFCHKTF----AYHFEDTNDDDWITKYFFTGGTM 196
+ + +F + + W + G
Sbjct: 131 HQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPR 178
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 1e-09
Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 20/178 (11%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
+++L ++D CG G+ + +++Q + ++ G+ S K +E
Sbjct: 38 NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVS---KSALE 92
Query: 105 EQCRVLELQNVEIIVADISTFEMEASYD------RIYSIEMFEHM--KNYQNLLKKISKW 156
+ N+ + D E A IY F H+ + + L + +
Sbjct: 93 IAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRIL 152
Query: 157 MKEDTLLFVHHFCHKTFAYHFEDTNDDDWI-------TKYFFTGGTMPSANLLLYFQD 207
+ + +++ + + ++ G + ++ LYF D
Sbjct: 153 LGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFPD 210
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-09
Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
+L+ R G + +G G L+ + ++ + E +
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK 164
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
L + V +I D + + +D + + + + + + I +++ +T +
Sbjct: 165 VIEGLGVDGVNVITGDETVID-GLEFDVLM---VAALAEPKRRVFRNIHRYVDTETRIIY 220
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-09
Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102
+LE E+ + ++ ++D GCG G Y+ + + K+ I + +
Sbjct: 2 SLERPEEYLPNIF-----EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKE 54
Query: 103 IEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 162
++E+ + I ++D + S D I F M + Q+++ ++ + +K+D
Sbjct: 55 VKEKF------DSVITLSDPKEIP-DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGR 107
Query: 163 LFVHHFCHK 171
+ + + +
Sbjct: 108 VIIIDWRKE 116
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 18/152 (11%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
++E G + D+GCG G+ +L +A Y ++TG+ S+ E +E+ +V+
Sbjct: 28 LEQVEPGKRIADIGCGTGTATLLLADHY---EVTGVDLSEEMLEIAQEKAMETNR-HVDF 83
Query: 118 IVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKEDTLL---------F 164
V D+ E+ D I S+ + + + ++ + + L
Sbjct: 84 WVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM 143
Query: 165 VHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM 196
F KT+A H E ++ W ++
Sbjct: 144 ETLFNGKTYATHAEQSS-YIWFADPGEEPLSV 174
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-08
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 28 KYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87
K + S +++ S+ + D+ + ++ VLDVGCG G + +++
Sbjct: 18 KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG-- 75
Query: 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKN 145
K G+ S + I++ E ++ I D+S+ FE ++ I +I E +
Sbjct: 76 YKAVGVDIS---EVMIQKGKERGEGPDLSFIKGDLSSLPFE-NEQFEAIMAINSLEWTEE 131
Query: 146 YQNLLK 151
L
Sbjct: 132 PLRALN 137
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 26/179 (14%)
Query: 33 SCCYFSDASKTLEDAEKAMLELYCER----------SRLEDGHTVLDVGCGWGSLSLYIA 82
+C + ++ + + E+ +G TVLD+GCG G +
Sbjct: 43 ACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLAS 102
Query: 83 QKY-SNCKITGICNS--------KTQKEFIEEQCRVLELQNVEIIVADISTFEM------ 127
+ + K+ G+ K + E+ NV + I
Sbjct: 103 KLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162
Query: 128 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDW 185
++S D + S + N L K+I + +++ L+ + +
Sbjct: 163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILY 221
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
F + + + KA L Y + VLD+GCG G ++ + G+
Sbjct: 16 LFEEKFRGSRELVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDI 71
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKI 153
++ +F E + V++ +E + + + D + EH+ LL
Sbjct: 72 NEDMIKFCEGKFNVVKSDAIE----YLKSLP-DKYLDGVMISHFVEHLDPERLFELLSLC 126
Query: 154 SKWMKEDTLLFV 165
MK + + +
Sbjct: 127 YSKMKYSSYIVI 138
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
L++GC G+ + +A C ++T I ++ + ++ DI
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTK--RWSHISWAATDI 106
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNL---LKKISKWMKEDTLLFVHHFCHKTFAYHF 177
F +D I E+ ++++ + + + K + L T
Sbjct: 107 LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWG 164
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 5e-08
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
+ RL+D + D+G G S+S+ + N +I + + FI + + +NV +
Sbjct: 35 KLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTL 94
Query: 118 IVADI-STFEMEASYDRIY 135
+ A + DR++
Sbjct: 95 VEAFAPEGLDDLPDPDRVF 113
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 19/174 (10%)
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 118
L G +L++GCG G + + + S E E +
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGS---PELAAE-AS--RRLGRPVR 90
Query: 119 VADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 176
+ +YD +++ H+ ++LK I + +K L + ++
Sbjct: 91 TMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA------SYKSG 144
Query: 177 FEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWL 230
+ D ++ + + V GK + Q ++L
Sbjct: 145 EGEGRDKLA---RYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFL 195
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 6e-08
Identities = 16/150 (10%), Positives = 46/150 (30%), Gaps = 5/150 (3%)
Query: 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 103
+ + K + E LD G G G ++ + ++ + ++
Sbjct: 60 INSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQA 118
Query: 104 EEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKED 160
+ + + F E SYD I+ + H+ + L++ ++ +
Sbjct: 119 KTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN 178
Query: 161 TLLFVHHFCH-KTFAYHFEDTNDDDWITKY 189
++ + + D++ +
Sbjct: 179 GIIVIKDNMAQEGVILDDVDSSVCRDLDVV 208
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-08
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 21/170 (12%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
+ ++A+L R VLD+GCG G L +A + + G+ +T +
Sbjct: 38 QVTDQAILLAILGRQ----PERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAAR 91
Query: 105 EQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLL 163
+ + YD I + H + LL + + L+
Sbjct: 92 AAGAGEVHL-ASYAQLAEAKVPVGKDYDLICANFALLHQ-DIIELLSAMRTLLVPGGALV 149
Query: 164 F-VHHFCHKTFAYHFEDTNDDDW---------ITKYFFTGGTMPSANLLL 203
H + + ++ + + YF T + N L
Sbjct: 150 IQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASW--LNALD 197
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVL 110
+ + S L G L GCG G + +A + G+ S++ + E
Sbjct: 56 IVHLVDTSSLPLG-RALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP 112
Query: 111 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168
+ + + D+ T+ +D I+ F + + K + + +K D L +
Sbjct: 113 KAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT-----QKEFIEEQCRVLELQN 114
+ + V+D+GCG G+L + + S +ITG+ S + + ++ ++ +
Sbjct: 26 KSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKR 85
Query: 115 VEIIVADISTFEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 164
+ + + + + + YD IE+ EH+ Q K + ++ + T++
Sbjct: 86 ISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
+L + G G + ++A ++T + S ++ + + + + ++++
Sbjct: 30 QGKILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLA 86
Query: 124 TFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
F++ +++ I SI Q L K+ + +K + + F + Y+ D
Sbjct: 87 DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKD 146
Query: 183 DDW 185
D
Sbjct: 147 LDL 149
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-V 115
R + G T +D+G G G+LS+ +A++ + I + SK E + L + +
Sbjct: 38 NRFGITAG-TCIDIGSGPGALSIALAKQS-DFSIRALDFSKHMNEIALKNIADANLNDRI 95
Query: 116 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
+I+ D+ E + D I S ++ ++I
Sbjct: 96 QIVQGDVHNIPIE-DNYADLIVSRGSVFFWEDVATAFREI 134
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV 115
+ L++G TVLDVG G G Y+++ K+ I + + E+ L L+NV
Sbjct: 31 KEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNV 90
Query: 116 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMK 158
E++ ++ + + + D I+ F + L+++ + K
Sbjct: 91 EVLKSEENKIPLP-DNTVDFIFMAFTFHELSEPLKFLEELKRVAK 134
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-07
Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
RSR + ++LDV CG G+ + ++ G+ S ++ + R L + +
Sbjct: 35 RSRTPEASSLLDVACGTGTHLEHFTKE--FGDTAGLELS---EDML-THARK-RLPDATL 87
Query: 118 IVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKE------DTLLFVHH 167
D+ F + + + S+ + + + ++ ++ + F
Sbjct: 88 HQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET 147
Query: 168 FCHKTFAYHFEDTNDDD--WITKYFFTG 193
F + + ++ G
Sbjct: 148 FADGWVSADVVRRDGRTVARVSHSVREG 175
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 7e-07
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCR------- 108
E +++ G +L++GCG G LS +A + S+ +TGI + +
Sbjct: 37 EAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA 96
Query: 109 -----VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLK 151
L + + D+ + +DR+ + + L
Sbjct: 97 GPLGDRLTVHFNTNLSDDLGPIA-DQHFDRVVLAHSLWYFASANALAL 143
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 38/189 (20%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN----- 114
+ + D+G G G+ + +A + ++T + +E E R LEL +
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLY---ERSQEMAEFARRSLELPDNAAFS 89
Query: 115 --VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172
+E++ AD++ + E F H+ N + K
Sbjct: 90 ARIEVLEADVTLRAKARVEAGLPD-EHFHHV--IMN-----PPYNDAGDRRTPDA--LKA 139
Query: 173 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
A+ + +DWI A+ ++ +S++ Q+ E +
Sbjct: 140 EAHAMTEGLFEDWIRT----------ASAIMVSGGQLSLI--------SRPQSVAEIIAA 181
Query: 233 MDNNLASIK 241
+ ++
Sbjct: 182 CGSRFGGLE 190
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 1e-06
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 67 VLDVGCGWGSLSLYI----AQKYSNCKITGIC---NSKTQKEFIEEQCRVLELQNVEIIV 119
+L +G G G + L I +Y I +++ ++ E + L+NV+
Sbjct: 56 ILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAW 115
Query: 120 ADISTFEMEA---------SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170
++ E ++ +D I+ I+M ++K+ LK + + + +
Sbjct: 116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175
Query: 171 KTFAYHF 177
+
Sbjct: 176 SSGWDKL 182
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ L V+DVGCG G +++ IA++ + I E ++ ++N +
Sbjct: 29 GKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQ 86
Query: 117 IIVAD 121
II
Sbjct: 87 IIKGR 91
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 3e-06
Identities = 14/82 (17%), Positives = 28/82 (34%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
G VLD+GC G L+L IA K+ ++ G+ + R + + + +
Sbjct: 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLE 106
Query: 124 TFEMEASYDRIYSIEMFEHMKN 145
+ ++
Sbjct: 107 GDPGAEGEEGTTTVRKRSCFPA 128
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
+ T+ D+G G GS+++ + S+ ++E I L + +
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIA 79
Query: 118 IVADI 122
+
Sbjct: 80 VQQGA 84
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-CN----SKTQKEFIEEQCRVLE 111
+ L++ +LD+GCG G +SL +A K +TGI N +
Sbjct: 24 IHNYLQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 112 LQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMK 158
E V + S+ F ++S+D + + + + I + +
Sbjct: 82 GGKAEFKVENASSLSFH-DSSFDFAVMQAFLTSVPDPKERSRIIKEVFR 129
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 6/150 (4%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
AE +E + + VLD+ CG G +L +A++ ++ G+ +
Sbjct: 24 KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARR 81
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHM--KNYQNLLKKISKWMKEDTL 162
+ + L +E + D+ + +D + + ++ + L K+++ +K +
Sbjct: 82 KAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGV 140
Query: 163 LFVHHFCHKTFAYHFEDTNDDDWITKYFFT 192
C ++ +
Sbjct: 141 FITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 3e-06
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSK------TQKEFIEEQCRVLEL 112
R T++D GCG GSL + ++ I G+ S + ++ +
Sbjct: 718 RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV 777
Query: 113 QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLF 164
++ + I F+ D +E+ EHM+ Q +K+ L+
Sbjct: 778 KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 13/144 (9%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
E A L R ++LDV CG G ++A + G+ S + +
Sbjct: 34 HREAADLAALVRR-HSPKAASLLDVACGTGMHLRHLADS--FGTVEGLELS---ADML-A 86
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKED- 160
R + + D+ F + + + SI L++ + + D
Sbjct: 87 IARR-RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG 145
Query: 161 TLLFVHHFCHKTFAYHFEDTNDDD 184
++ + + F + +
Sbjct: 146 VVVVEPWWFPENFTPGYVAAGTVE 169
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-06
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-LQ 113
R L G +L+VG G G++S YI +T + + + + +
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162
Query: 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173
NV +DI+ F + YD + + + N ++KI+ MK ++ +
Sbjct: 163 NVRTSRSDIADFISDQMYDA-----VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQS 217
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 13/147 (8%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
+ C + L LD+ CG G+L+ + K + S+ E
Sbjct: 21 KKWSDFIIEKCVENNLVFD-DYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAEN 77
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKED- 160
+ R L + DIS + +D I S + + K +S +KE
Sbjct: 78 KFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG 136
Query: 161 TLLF----VHHFCHKTFAYHFEDTNDD 183
+F + F +D+
Sbjct: 137 VFIFDINSYYKLSQVLGNNDFNYDDDE 163
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-06
Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 25/149 (16%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
ED ++ ++E + +LDVG G G + ++A +I G+ + +
Sbjct: 27 EDPDRVLIEPWATGV----DGVILDVGSGTGRWTGHLASL--GHQIEGLEPA---TRLV- 76
Query: 105 EQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDT 161
E R +V I+ + + + HM + + L + +++
Sbjct: 77 ELARQT-HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGG 135
Query: 162 LLFV-----------HHFCHKTFAYHFED 179
L + +H + + +
Sbjct: 136 GLLMSFFSGPSLEPMYHPVATAYRWPLPE 164
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 7e-06
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 17/135 (12%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y ++ L + + L VL+ GCG G + + +
Sbjct: 21 YRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDF 78
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADIST---FEMEASYDRIYSIEMFEHMKNYQNLLKK 152
S + + ++ + + A + I S + +++ +
Sbjct: 79 SPELLKLARANAP-----HADVYEWNGKGELPAGLGAPFGLIVS------RRGPTSVILR 127
Query: 153 ISKWMKED-TLLFVH 166
+ + D L+V
Sbjct: 128 LPELAAPDAHFLYVG 142
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 16/123 (13%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
L +++G G G ++ + G+ E E + + V
Sbjct: 41 AVKCLLPEGRGVEIGVGTGRFAVPLK------IKIGV-------EPSERMAEIARKRGVF 87
Query: 117 IIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174
++ + + S+D + + + + LK+ + +K+ L V ++F
Sbjct: 88 VLKGTAENLPLK-DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL 146
Query: 175 YHF 177
Sbjct: 147 GRE 149
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-06
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEII 118
+DVGCG G ++L +A ++ I + E + L NV ++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELAG--RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87
Query: 119 VADI-STFEMEASYDRI 134
D D
Sbjct: 88 EGDAPEALCKIPDIDIA 104
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 26/169 (15%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIE 104
+ +A+LE L +L +GCG +LS + + N +T + S ++
Sbjct: 30 SSFRALLEPE-----LRPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAMQ 82
Query: 105 EQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM---------------KNYQN 148
+ + D+ + AS+D + + +
Sbjct: 83 ACYA--HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQ 140
Query: 149 LLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMP 197
+L ++S+ + F W ++ G
Sbjct: 141 VLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYGSGFH 189
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-05
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 50 AMLELYCE-RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 108
+ + Y ++ ++LD GCG+ L+LY + + + F+
Sbjct: 35 TLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIG 94
Query: 109 VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN 145
L+ ++ + + + +YD ++ ++M +K
Sbjct: 95 KLKTT-IKYRFLNKESDVYKGTYDVVFLLKMLPVLKQ 130
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 11/134 (8%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y E + G +LD GCG G + Y++++ + G
Sbjct: 19 YAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDL 76
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQNL---LK 151
I + + + +V D+S ++ E +D I S L
Sbjct: 77 D---PILI-DYAKQ-DFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALA 131
Query: 152 KISKWMKEDTLLFV 165
I + + D +
Sbjct: 132 NIHRALGADGRAVI 145
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNV-------E 116
VLDVGCG G LS+ A+ ++T + +E + E
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLT----------LCDVSAPAVEASRATLAANGVEGE 248
Query: 117 IIVADISTFEMEASYDRIYS 136
+ +++ + E++ +D I S
Sbjct: 249 VFASNVFS-EVKGRFDMIIS 267
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-05
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 23/84 (27%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------- 112
++D+GCG G + L + K K+ F++E +
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVV----------FVDESPMAVASSRLNVETNMPEAL 274
Query: 113 QNVEIIVADISTFEMEASYDRIYS 136
E ++ + + ++ +
Sbjct: 275 DRCEFMINNALSGVEPFRFNAVLC 298
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106
L L + + H VLD+G G G +L + + G+ +K E
Sbjct: 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSF 62
Query: 107 CRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLK 151
+ ++NV + F + S+D I H + + ++
Sbjct: 63 AQEKGVENVRFQQGTAESLPFP-DDSFDIITCRYAAHHFSDVRKAVR 108
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-05
Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 37/214 (17%)
Query: 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ 99
D K L + +D+G G G +A N GI K
Sbjct: 5 KGTKTVDLSKDELT----EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKEN 60
Query: 100 KEFI----EEQCRVLELQNVEIIVADIS--TFEMEASYDRIY-----SIEMFEHMKNYQN 148
I ++ L NV ++A FE++ D I + +K ++
Sbjct: 61 LFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRD 120
Query: 149 LLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDD 208
+L ++ K++ T D + +P + + +
Sbjct: 121 ILSNVADLAKKEAHFEF-------------VTTYSDSYEEAEIKKRGLPLLSKAYFLSEQ 167
Query: 209 VS---------VVDHWLVNGKHYAQTSEEWLKRM 233
+ D ++ ++ Q + W KR+
Sbjct: 168 YKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRL 201
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 17/94 (18%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE---EQCRVLELQ 113
L G + D+G G G S+ +A + + + E +Q
Sbjct: 28 NLLNLPKGSVIADIGAGTGGYSVALANQ--GLFVYAV-------EPSIVMRQQAV--VHP 76
Query: 114 NVEIIVADIST--FEMEASYDRIYSIEMFEHMKN 145
VE + S D + SI H +
Sbjct: 77 QVEWFTGYAENLALP-DKSVDGVISILAIHHFSH 109
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 39/270 (14%), Positives = 71/270 (26%), Gaps = 49/270 (18%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-- 93
Y D + + +L L R H VLDV CG G S+ + ++ +T +
Sbjct: 34 YIGDTRSRTAEYKAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDA 87
Query: 94 -------CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHMKN 145
+ E ++ + D +D + + F H+ +
Sbjct: 88 SDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD-KDVPAGDGFDAVICLGNSFAHLPD 146
Query: 146 YQN-------LLKKISKWMKEDTLLFVHHF----------CHKTFAYHFEDTNDDDWITK 188
+ LK I+ ++ LL + H +++ D T
Sbjct: 147 SKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTS 206
Query: 189 YFFTGGTMPSANLLLYFQDDVSVVD----HWLVNGKHYAQTSEE---WLKRMDNNLASIK 241
L Q + D +Y ++
Sbjct: 207 VLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQH- 265
Query: 242 PIMESTYG--KDQAVKWTVYWRTFFIAVAE 269
S G K Y +FI V +
Sbjct: 266 ----SVLGDFKPYRPG-QAYVPCYFIHVLK 290
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 9/109 (8%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEII 118
G + D+G G GS+S+ + + I + E I++ L + +
Sbjct: 52 APRRGELLWDIGGGSGSVSVEWCL--AGGRAITIEPRADRIENIQKNIDTYGLSPRMRAV 109
Query: 119 VADIST-FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166
+ + F Q L ++ +W+ T + +
Sbjct: 110 QGTAPAALADLPLPEAV-----FIGGGGSQALYDRLWEWLAPGTRIVAN 153
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102
T +A +L L +E G V D+G G G LS A ++ + K +
Sbjct: 30 TPGNAASELLWLAYSLGDIE-GKVVADLGAGTGVLSY-GALLLGAKEVICVEVDKEAVDV 87
Query: 103 IEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 162
+ E + + ++ + D+S F + D + + + + K + +
Sbjct: 88 LIENLGEFKGK-FKVFIGDVSEF--NSRVDIVI-MNPPFGSQRKHADRPFLLKAFEISDV 143
Query: 163 LFVHHFCHKTFAYHFE 178
++ H E
Sbjct: 144 VYSIHLAKPEVRRFIE 159
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADIS 123
+LD+GCG+G + + +A + T ++ + +E ++ L N + ++ +D+
Sbjct: 55 DILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY 112
Query: 124 TFEMEASYDRIYS 136
+ Y++I +
Sbjct: 113 ENVKDRKYNKIIT 125
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Length = 207 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQK-EFIEEQCRVLELQNVEI 117
+ G +DVG G G + ++ T + +S ++ F+ + L+L+N+E
Sbjct: 61 APYLQGERFIDVGTGPGLPGIPLSIVRPEAHFT-LLDSLGKRVRFLRQVQHELKLENIEP 119
Query: 118 IVADISTFEMEASYDRI 134
+ + + F E +D +
Sbjct: 120 VQSRVEEFPSEPPFDGV 136
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI---------CNSKTQKEFIEEQCR 108
VL++ G G L+ ++T + + + + + R
Sbjct: 77 TRTGPVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDR 134
Query: 109 VLELQNVEIIVADISTFEMEASYDRIYSI 137
++ D+S F ++ + +
Sbjct: 135 ------CTLVQGDMSAFALDKRFGTVVIS 157
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE----L 112
+ +++G TV+D CG G+ + ++A N ++ G Q + I + L +
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGF---DIQDKAIANTTKKLTDLNLI 73
Query: 113 QNVEIIVADISTFE 126
V +I +
Sbjct: 74 DRVTLIKDGHQNMD 87
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 7e-04
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111
L + + L+ VLDV G G ++ A K+ ++ +
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG 83
Query: 112 LQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLK 151
Q VE + D F + + + H N + +
Sbjct: 84 HQQVEYVQGDAEQMPFT-DERFHIVTCRIAAHHFPNPASFVS 124
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 100.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 100.0 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 100.0 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 100.0 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.96 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.92 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.89 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.87 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.87 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.84 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.83 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.83 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.83 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.82 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.81 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.81 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.81 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.8 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.8 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.8 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.79 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.79 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.78 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.78 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.78 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.78 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.78 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.78 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.77 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.77 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.77 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.77 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.77 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.76 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.76 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.76 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.76 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.75 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.75 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.75 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.75 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.75 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.75 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.75 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.75 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.74 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.74 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.74 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.74 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.74 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.73 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.73 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.73 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.73 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.73 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.73 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.72 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.72 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.72 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.72 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.72 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.72 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.72 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.72 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.72 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.71 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.71 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.71 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.71 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.71 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.71 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.71 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.7 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.7 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.7 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.7 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.7 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.7 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.7 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.7 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.7 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.7 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.7 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.69 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.69 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.69 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.69 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.69 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.69 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.69 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.69 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.69 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.69 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.68 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.68 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.68 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.68 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.68 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.68 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.68 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.68 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.68 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.68 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.68 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.67 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.67 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.67 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.67 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.67 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.67 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.66 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.66 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.66 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.66 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.66 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.66 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.66 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.66 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.66 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.66 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.66 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.65 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.65 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.65 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.65 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.65 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.64 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.64 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.64 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.64 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.64 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.63 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.63 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.63 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.63 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.63 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.63 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.63 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.63 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.63 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.62 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.62 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.62 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.62 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.62 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.62 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.61 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.61 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.61 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.61 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.61 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.6 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.6 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.6 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.6 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.6 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.59 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.59 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.59 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.59 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.59 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.59 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.59 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.58 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.58 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.58 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.57 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.57 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.57 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.56 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.56 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.56 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.56 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.56 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.56 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.56 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.55 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.55 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.55 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.55 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.55 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.54 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.54 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.52 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.52 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.51 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.51 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.51 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.51 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.51 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.5 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.5 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.5 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.5 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.5 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.5 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.49 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.49 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.49 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.49 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.49 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.48 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.48 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.48 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.47 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.47 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.47 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.47 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.47 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.47 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.47 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.47 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.46 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.45 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.45 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.45 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.45 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.44 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.44 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.44 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.44 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.44 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.43 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.43 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.43 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.43 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.42 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.41 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.39 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.39 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.38 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.38 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.37 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.36 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.35 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.35 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.33 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.31 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.31 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.29 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.26 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.24 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.24 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.22 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.2 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.17 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.15 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.14 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.13 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.11 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.08 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.06 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.04 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 99.04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.04 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.99 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.98 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.94 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.94 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.94 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.89 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.84 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.77 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.77 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.7 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.65 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.6 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.57 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.54 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.5 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.49 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.47 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.44 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.44 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.42 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.32 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.19 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.0 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.98 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.83 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.81 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.73 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.52 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.49 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 97.13 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.04 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.03 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.94 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.92 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.77 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.76 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.75 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.74 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.73 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.69 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.64 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.59 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.54 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.43 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.41 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.4 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.35 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.27 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.22 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.13 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.13 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.12 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.12 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.06 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.06 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.05 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.01 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.98 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.91 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.9 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.88 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.82 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.81 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.77 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.76 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.74 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.73 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.73 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.72 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.7 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.7 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.7 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.69 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.56 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.45 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.44 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.38 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.33 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.31 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.18 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.03 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.01 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.97 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.97 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.94 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.89 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.74 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.73 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.71 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.6 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.57 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.56 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.5 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.46 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.3 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.11 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.09 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.07 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 94.0 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.84 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.7 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.68 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.51 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.47 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 93.42 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.39 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.31 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.29 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 93.21 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.19 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 93.16 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 93.14 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.0 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 92.92 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.85 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.85 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.83 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.76 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.64 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.57 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 92.31 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.29 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.19 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 92.11 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.08 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.06 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.04 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 91.97 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.94 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 91.87 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.76 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 91.74 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 91.72 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.72 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.67 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.47 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.44 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.35 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 91.3 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 91.28 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.28 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 91.24 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.07 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.97 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 90.85 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 90.78 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.74 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.57 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.52 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 90.49 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 90.2 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 90.19 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.94 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 89.91 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 89.86 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 89.82 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 89.81 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 89.56 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 89.34 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 89.16 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 89.01 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 89.01 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 88.97 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 88.92 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 88.78 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 88.77 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 88.63 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 88.53 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 88.5 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.24 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 88.18 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.12 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.9 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 87.84 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 87.8 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 87.57 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 87.5 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 87.36 | |
| 3nbm_A | 108 | PTS system, lactose-specific IIBC components; PTS_ | 87.25 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 86.97 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 86.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 86.89 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 86.82 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 86.72 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 86.69 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 86.65 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 86.64 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 86.6 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 86.54 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.52 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 86.5 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 86.16 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 86.13 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 86.12 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 86.04 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 85.92 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.64 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 85.63 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 85.56 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 85.53 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 85.42 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 85.42 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 85.27 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 85.13 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 85.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 84.86 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 84.85 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 84.8 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 84.53 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 84.46 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 84.41 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 84.11 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 83.99 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 83.93 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 83.88 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 83.85 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 83.84 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 83.79 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 83.79 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 83.76 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 83.68 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 83.65 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 83.6 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=282.59 Aligned_cols=267 Identities=25% Similarity=0.417 Sum_probs=230.6
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022864 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 85 (291)
.....+++|||.++++|..++++.+.|++++|..+..++++++.++++.+++.+...++.+|||||||+|.++..+++.+
T Consensus 15 ~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 94 (302)
T 3hem_A 15 PPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY 94 (302)
T ss_dssp CCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccccc---------HHHHHHHHHh
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMKN---------YQNLLKKISK 155 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~---------~~~~l~~~~~ 155 (291)
+.+|+|+|+|+.+++.+++++...+++ ++.++.+|+.++ +++||+|++..+++|+++ ...+++++.+
T Consensus 95 -~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~ 171 (302)
T 3hem_A 95 -DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYN 171 (302)
T ss_dssp -CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHH
T ss_pred -CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHH
Confidence 489999999999999999999998885 799999999887 589999999999999944 4899999999
Q ss_pred ccccCeeEEEEeeccCCcccccccCCc---------cchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHH
Q 022864 156 WMKEDTLLFVHHFCHKTFAYHFEDTND---------DDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQ 224 (291)
Q Consensus 156 ~LkpgG~l~~~~~~~~~~~~~~~~~~~---------~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~ 224 (291)
+|||||++++.++.......... ... ..|+.++++|++.+++...+..+. .++.+++. ...+.||.+
T Consensus 172 ~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~-~~~~~~y~~ 249 (302)
T 3hem_A 172 LTPDDGRMLLHTITIPDKEEAQE-LGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY-HRIGANYVP 249 (302)
T ss_dssp SSCTTCEEEEEEEECCCHHHHHH-HTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE-EECGGGHHH
T ss_pred hcCCCcEEEEEEEeccCccchhh-ccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEE-EeCchhHHH
Confidence 99999999999887654321110 011 278999999999998877666543 35666554 556789999
Q ss_pred HHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022864 225 TSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 225 tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
|+..|.+++.++..++.++ ++ ..+++.|+.|+.+|+.+|+.|. +++.||+++|
T Consensus 250 tl~~w~~~~~~~~~~~~~~----~~----~~~~~~w~~yl~~~~~~f~~~~---~~~~q~~~~~ 302 (302)
T 3hem_A 250 TLNAWADALQAHKDEAIAL----KG----QETCDIYMHYLRGCSDLFRDKY---TDVCQFTLVK 302 (302)
T ss_dssp HHHHHHHHHHHTHHHHHHH----HC----HHHHHHHHHHHHHHHHHHHTTS---SEEEEEEEEC
T ss_pred HHHHHHHHHHHhHHHHHHH----hC----HHHHHHHHHHHHHHHHHHhCCC---CeEEEEEEEC
Confidence 9999999999998887765 45 3689999999999999999988 6799999987
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=264.85 Aligned_cols=269 Identities=25% Similarity=0.430 Sum_probs=227.9
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022864 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 84 (291)
..+...++.|||.+++||+.++++.+.|++++|..+..++.+++.++++.+++.+...++.+|||||||+|.++..+++.
T Consensus 6 ~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 85 (287)
T 1kpg_A 6 KPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK 85 (287)
T ss_dssp CCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred cccHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHH
Confidence 34667899999999999999999999999999998889999999999999999998889999999999999999999966
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022864 85 YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG 161 (291)
. +.+|+|+|+|+.+++.+++++...++ +++.++.+|+.+++ ++||+|++..+++|+ ++...+++++.++|||||
T Consensus 86 ~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 162 (287)
T 1kpg_A 86 Y-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADG 162 (287)
T ss_dssp H-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC
T ss_pred c-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCC
Confidence 5 67999999999999999999988776 47999999998875 789999999999999 688999999999999999
Q ss_pred eEEEEeeccCCccccc--------ccCCccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHHHHHHHH
Q 022864 162 LLFVHHFCHKTFAYHF--------EDTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLK 231 (291)
Q Consensus 162 ~l~~~~~~~~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~tl~~w~~ 231 (291)
++++.++......... .......|+.++++|++.+++...+..+. .++.+++ +...+.+|.+|+..|.+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~-~~~~~~~y~~~~~~w~~ 241 (287)
T 1kpg_A 163 VMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTR-VQSLQPHYAKTLDLWSA 241 (287)
T ss_dssp EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEE-EEECHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEE-EEeCcHhHHHHHHHHHH
Confidence 9999988765432100 00123457778889999888777666543 4566555 34556789999999999
Q ss_pred HHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022864 232 RMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
++.++..++.+. ++ ..+++.|+.|+.+|+++|+.|. +++.||+++|
T Consensus 242 ~~~~~~~~~~~~----~~----~~~~~~~~~~l~~~~~~f~~g~---~~~~~~~~~k 287 (287)
T 1kpg_A 242 ALQANKGQAIAL----QS----EEVYERYMKYLTGCAEMFRIGY---IDVNQFTCQK 287 (287)
T ss_dssp HHHHTHHHHHHH----SC----HHHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEC
T ss_pred HHHHHHHHHHHh----cC----hHHHHHHHHHHHHHHHHHhCCC---CeEEEEEEEC
Confidence 999888777654 33 3688999999999999999977 8899999987
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.44 Aligned_cols=268 Identities=23% Similarity=0.389 Sum_probs=222.9
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022864 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~ 86 (291)
+...++.|||.++++|+.++++.+.|++++|.....++.+++.++++.+++.+...++.+|||||||+|.++..+++.+
T Consensus 34 ~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~- 112 (318)
T 2fk8_A 34 RFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF- 112 (318)
T ss_dssp ----CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-
T ss_pred hHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-
Confidence 4466789999999999999999999999999988899999999999999999988899999999999999999999886
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCeeE
Q 022864 87 NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l 163 (291)
+++|+|+|+|+.+++.+++++...++ +++.++.+|+.+++ ++||+|++..+++|+ ++...+++++.++|||||++
T Consensus 113 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 113 DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEE
Confidence 67999999999999999999988877 46999999998875 789999999999999 78999999999999999999
Q ss_pred EEEeeccCCcccccc--------cCCccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHHHHHHHHHH
Q 022864 164 FVHHFCHKTFAYHFE--------DTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRM 233 (291)
Q Consensus 164 ~~~~~~~~~~~~~~~--------~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~tl~~w~~~l 233 (291)
++.++.......... ......|+.++++|++.+++...+.... .++.+++ +...+.+|.+++..|.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~-~~~~~~~y~~~~~~w~~~~ 269 (318)
T 2fk8_A 191 TVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPE-PLSLRPHYIKTLRIWGDTL 269 (318)
T ss_dssp EEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCC-CEECHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEE-EEecchhHHHHHHHHHHHH
Confidence 999987654321000 0012367778889988888766665543 3555544 3444568999999999999
Q ss_pred HhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 234 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
.+...++... ++ ..+++.|..|+..|++.|+.|. .++.||+++||
T Consensus 270 ~~~~~~~~~~----~~----~~~~~~~~~~l~~~~~~f~~g~---~~~~~~~~~k~ 314 (318)
T 2fk8_A 270 QSNKDKAIEV----TS----EEVYNRYMKYLRGCEHYFTDEM---LDCSLVTYLKP 314 (318)
T ss_dssp HHTHHHHHHH----SC----HHHHHHHHHHHHHHHHHHHTTS---CEEEEEEEECT
T ss_pred HHHHHHHHHh----cC----hHHHHHHHHHHHHHHHHHHCCC---CeEEEEEEEeC
Confidence 9887776554 33 3688999999999999999987 57999999998
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-31 Score=225.56 Aligned_cols=265 Identities=18% Similarity=0.231 Sum_probs=186.9
Q ss_pred CCccccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHH
Q 022864 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDAS--KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLS 78 (291)
Q Consensus 1 ~~~~~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~ 78 (291)
||- .+...++.|||..+++|..++++.+++ ++|.... .++.+++.++.+.+++.+...++.+|||||||+|.++
T Consensus 1 m~~--p~~~~~~~~Yd~~~~~y~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~ 76 (273)
T 3bus_A 1 MAA--PTPEEVRQMYDDFTDPFARIWGENLHF--GYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPA 76 (273)
T ss_dssp ------------------------CCGGGCCC--CCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHH
T ss_pred CCC--CcHHHHHHHHcchHHHHHHHcCCCceE--EecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHH
Confidence 454 567779999999999999999997755 8998765 6899999999999999999889999999999999999
Q ss_pred HHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhc
Q 022864 79 LYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKW 156 (291)
Q Consensus 79 ~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~ 156 (291)
..+++.. +.+|+|+|+|+.+++.+++++...++ +++.++.+|+.+++.+ ++||+|++..+++|+++...+++++.++
T Consensus 77 ~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~ 155 (273)
T 3bus_A 77 VRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARV 155 (273)
T ss_dssp HHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTT
T ss_pred HHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHH
Confidence 9999876 78999999999999999999988887 4799999999998766 7899999999999999999999999999
Q ss_pred cccCeeEEEEeeccCCcccccccCCccchhhh--hccCCCCCCcHHHHHHh-h-cCcEEEEeeecCCCcHHHHHHHHHHH
Q 022864 157 MKEDTLLFVHHFCHKTFAYHFEDTNDDDWITK--YFFTGGTMPSANLLLYF-Q-DDVSVVDHWLVNGKHYAQTSEEWLKR 232 (291)
Q Consensus 157 LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~y~~tl~~w~~~ 232 (291)
|||||++++.++......... ...+... ..++....++...+... . .++.+++ +...+.+|.+++..|.++
T Consensus 156 L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~-~~~~~~~~~~~~~~~~~~ 230 (273)
T 3bus_A 156 LRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTS-TVDISAQARPSLVKTAEA 230 (273)
T ss_dssp EEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEE-EEECHHHHTTHHHHHHHH
T ss_pred cCCCeEEEEEEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEE-EEECcHhHHHHHHHHHHH
Confidence 999999999888654321110 0111111 12345555555544443 3 4666654 344456777899999999
Q ss_pred HHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
+.+....+.. .++++..+.+...|+.+ +..+. ++.+++++|||
T Consensus 231 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~kp 273 (273)
T 3bus_A 231 FENARSQVEP----FMGAEGLDRMIATFRGL-------AEVPE---AGYVLIGARKP 273 (273)
T ss_dssp HHHTHHHHHH----HHCHHHHHHHHHHHHHH-------HTCTT---EEEEEEEEECC
T ss_pred HHHhHHHHHh----hcCHHHHHHHHHHHHHH-------hhCCC---eeEEEEEEECC
Confidence 9877554433 35655545555555432 44443 89999999998
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=200.47 Aligned_cols=261 Identities=17% Similarity=0.198 Sum_probs=193.3
Q ss_pred chhHHHhhcCCC--hHHHHHhh-CCCCCccccccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCcchH
Q 022864 7 TDKAKEQHYELP--TSFFKLVL-GKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERS----RLEDGHTVLDVGCGWGSL 77 (291)
Q Consensus 7 ~~~~~~~~yd~~--~~~~~~~~-~~~~~y~~~~~~~~--~~~l~~~~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~ 77 (291)
+...+..|||.. .+||+..+ ++.+++ ++|... ...+.+++.+.+..+++.+ ...++.+|||+|||+|.+
T Consensus 19 ~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~ 96 (297)
T 2o57_A 19 VKDNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGA 96 (297)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHH
T ss_pred HHHHHHHHcCCccchhHHHHHhCCCceEE--EecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHH
Confidence 345688999997 49998777 566655 899877 7899999999999999998 778899999999999999
Q ss_pred HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHh
Q 022864 78 SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 78 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~ 155 (291)
+..+++.+ +.+|+|+|+|+.+++.++++....++ +++.++.+|+.+++.+ ++||+|++..+++|+++...+++++.+
T Consensus 97 ~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~ 175 (297)
T 2o57_A 97 ARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECAR 175 (297)
T ss_dssp HHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHH
Confidence 99999876 67999999999999999999988887 4799999999998765 789999999999999999999999999
Q ss_pred ccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-h-hcCcEEEEeeecC---CCcHHHHHHHHH
Q 022864 156 WMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVN---GKHYAQTSEEWL 230 (291)
Q Consensus 156 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~---~~~y~~tl~~w~ 230 (291)
+|||||++++.++......... ....+...+..+. +.+...+.. + ..++.+++..... ..+|.+++..|.
T Consensus 176 ~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2o57_A 176 VLKPRGVMAITDPMKEDGIDKS---SIQPILDRIKLHD--MGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELI 250 (297)
T ss_dssp HEEEEEEEEEEEEEECTTCCGG---GGHHHHHHHTCSS--CCCHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HcCCCeEEEEEEeccCCCCchH---HHHHHHHHhcCCC--CCCHHHHHHHHHHCCCeEEEEEECchhhHHHHHHHHHHHH
Confidence 9999999999988665432111 1122333322332 233333332 3 3466665543221 134555555555
Q ss_pred HHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 022864 231 KRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 290 (291)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 290 (291)
+.... + .+.++ ...++.|..++..+.+.++.|. ++.++|++|||.
T Consensus 251 ~~~~~----~----~~~~~----~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~a~Kp~ 295 (297)
T 2o57_A 251 KRSSE----I----ASFCS----PEFQANMKRGLEHWIEGGRAGK---LTWGGMLFRKSD 295 (297)
T ss_dssp HTHHH----H----TTTSC----HHHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEESS
T ss_pred HhHHH----H----hccCC----HHHHHHHHHHHHHHHHhccCCe---EEEEEEEEECCC
Confidence 43221 1 12233 2456777777777777776655 889999999994
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=178.34 Aligned_cols=220 Identities=19% Similarity=0.230 Sum_probs=165.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
......+++.+...++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.++++.... +++.++.+|+.+.+.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~ 117 (266)
T 3ujc_A 41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP 117 (266)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC
Confidence 3456777788888899999999999999999999887 789999999999999988776443 4899999999998765
Q ss_pred -CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCC-CCCcHHHHHH
Q 022864 129 -ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGG-TMPSANLLLY 204 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~ 204 (291)
++||+|++..+++|+ ++...+++++.++|||||.+++.++....... .......+..+.+ ..++...+..
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQRKYTLITVEEYAD 191 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhcCCCCCCCHHHHHH
Confidence 899999999999999 89999999999999999999999886654211 1111222222222 2334443333
Q ss_pred -h-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q 022864 205 -F-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVT 282 (291)
Q Consensus 205 -~-~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 282 (291)
+ ..++..++. ...+.+|..++..|.+.+.....++... ++++....+...|..|+.++.. |. .+.+
T Consensus 192 ~l~~~Gf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----g~---~~w~ 259 (266)
T 3ujc_A 192 ILTACNFKNVVS-KDLSDYWNQLLEVEHKYLHENKEEFLKL----FSEKKFISLDDGWSRKIKDSKR----KM---QRWG 259 (266)
T ss_dssp HHHHTTCEEEEE-EECHHHHHHHHHHHHHHHHHTHHHHHHH----SCHHHHHHHHHHHHHHHHHHHT----TS---EEEE
T ss_pred HHHHcCCeEEEE-EeCCHHHHHHHHHHHHHHHhCHHHHHHh----cCHHHHHHHHHHHHHHHHHHHc----Cc---ccce
Confidence 3 245665553 3445678889999999998887776554 5655556777779888877763 22 5567
Q ss_pred EEEEeec
Q 022864 283 HFLFRKK 289 (291)
Q Consensus 283 ~~~~~~~ 289 (291)
.|++|||
T Consensus 260 ~~~~~Kp 266 (266)
T 3ujc_A 260 YFKATKN 266 (266)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 7788998
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=176.69 Aligned_cols=211 Identities=16% Similarity=0.192 Sum_probs=158.9
Q ss_pred HhhcCCChHHHHHhhCCC-CCccccccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCE
Q 022864 12 EQHYELPTSFFKLVLGKY-FKYSCCYFSDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89 (291)
Q Consensus 12 ~~~yd~~~~~~~~~~~~~-~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~ 89 (291)
.+|||.+++++..+.++. +.|+...|.. ....+......+++.+. ..++.+|||+|||+|.++..+++.+ +.+
T Consensus 68 ~~~y~~~~~~~~~~~~~~~~~y~~~~f~~----~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~ 142 (312)
T 3vc1_A 68 HHHYGIGPVDRAALGDPEHSEYEKKVIAE----LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR 142 (312)
T ss_dssp CCSCCCSCCCHHHHCCTTSTTHHHHHHHH----HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE
T ss_pred hhhcCCchhHHHhhcCCCccccchHHHhh----hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE
Confidence 578999999888888877 8898888863 44445555567777777 7889999999999999999999876 789
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 90 ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+|+|+.+++.+++++...+++ ++.++.+|+.+++.+ ++||+|++..+++++ +...+++++.++|||||++++.+
T Consensus 143 v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 143 VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999998884 799999999998765 899999999999999 59999999999999999999988
Q ss_pred eccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hh-cCcEEEEeeecCCCcHHHHHHHHHHHHHhc
Q 022864 168 FCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQ-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 236 (291)
Q Consensus 168 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~ 236 (291)
+......... .....++.+..++. +++...+.. +. .++.+++.... -..++..|...+...
T Consensus 222 ~~~~~~~~~~--~~~~~~~~~~~~~~--~~s~~~~~~~l~~aGf~~~~~~~~----~~~~~~~w~~~~~~~ 284 (312)
T 3vc1_A 222 GCWNPRYGQP--SKWVSQINAHFECN--IHSRREYLRAMADNRLVPHTIVDL----TPDTLPYWELRATSS 284 (312)
T ss_dssp EEECTTTCSC--CHHHHHHHHHHTCC--CCBHHHHHHHHHTTTEEEEEEEEC----HHHHHHHHHHHTTST
T ss_pred ccccccccch--hHHHHHHHhhhcCC--CCCHHHHHHHHHHCCCEEEEEEeC----CHHHHHHHHHHHHHh
Confidence 7665432110 01122333333332 344443333 33 35555543221 156888888876643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-20 Score=157.35 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=130.9
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~- 128 (291)
...++..+. ..++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.+++++...++ ++++++.+|+.+++.+
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN 112 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC
Confidence 444555554 678899999999999999999987 577999999999999999999998888 4699999999998765
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHh--h
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYF--Q 206 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~ 206 (291)
++||+|++..+++++ +...+++++.++|||||++++.++......... .....|... +| .+++...+... .
T Consensus 113 ~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~--~~--~~~~~~~~~~~l~~ 185 (267)
T 3kkz_A 113 EELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPA--EINDFWMDA--YP--EIDTIPNQVAKIHK 185 (267)
T ss_dssp TCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH--HHHHHHHHH--CT--TCEEHHHHHHHHHH
T ss_pred CCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChH--HHHHHHHHh--CC--CCCCHHHHHHHHHH
Confidence 889999999999999 899999999999999999999887643221110 001223222 22 33444433332 3
Q ss_pred cCcEEEEeeecCC----CcHHHHHHHHHHHHHh
Q 022864 207 DDVSVVDHWLVNG----KHYAQTSEEWLKRMDN 235 (291)
Q Consensus 207 ~~~~~~~~~~~~~----~~y~~tl~~w~~~l~~ 235 (291)
.++..++...... .+|..++..|...+..
T Consensus 186 aGf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (267)
T 3kkz_A 186 AGYLPVATFILPENCWTDHYFTPKVAAQKIFLT 218 (267)
T ss_dssp TTEEEEEEEECCGGGTTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCHhHHHHHHHHHHHHHHHHHHH
Confidence 4666655433211 5788888999888764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=157.45 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
...+..+++.+...++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.+++++...++ +++.++.+|+.++++
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 100 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 100 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence 3456677777888899999999999999999999887 78999999999999999999998887 479999999999766
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.++||+|++..+++++++...+++++.++|||||++++.++....
T Consensus 101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 145 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ 145 (256)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccC
Confidence 688999999999999999999999999999999999998875543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-19 Score=150.50 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=103.9
Q ss_pred HHHHHHHHc-CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022864 51 MLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 128 (291)
....+++.+ ...++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+++++...+++ +++++++|+.+++.+
T Consensus 33 ~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 33 ATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 344455555 456788999999999999999999874 49999999999999999999998884 599999999988766
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|++..+++|+ +...+++++.++|||||++++.++..
T Consensus 112 ~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~ 153 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASW 153 (257)
T ss_dssp TTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred CCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 899999999999999 78999999999999999999998764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=158.52 Aligned_cols=137 Identities=24% Similarity=0.364 Sum_probs=109.4
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC
Q 022864 35 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 114 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 114 (291)
++++.....+..........+.......++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.+++++...++++
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 88 (276)
T 3mgg_A 9 GYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN 88 (276)
T ss_dssp --------------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred CCCHHHHhhHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 33333333344433444444444455678999999999999999999999888999999999999999999999888888
Q ss_pred eEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 115 VEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 115 v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+.++.+|+.+++.+ ++||+|++..+++++++...+++++.++|||||++++.++...
T Consensus 89 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (276)
T 3mgg_A 89 VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHG 146 (276)
T ss_dssp EEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGG
T ss_pred cEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 99999999998765 8999999999999999999999999999999999999887653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=157.91 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=107.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...+..+++.+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++...+++++.++.+|+.+++.+
T Consensus 23 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 23 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 3445667777777889999999999999999999874 59999999999999999999888887899999999998766
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
++||+|+++.+++|+++...+++++.++|||||++++.++..+.
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~ 145 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPE 145 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCS
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCC
Confidence 89999999999999999999999999999999999998765543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=155.18 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=97.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
.+++.+|||||||+|..+..+++.. ++++|+|+|+|+.|++.|++++...+. .+++++++|+.+++. ++||+|+++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence 5788999999999999999999874 578999999999999999999988776 479999999999865 579999999
Q ss_pred ccccccc--cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 138 EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 138 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.++++++ +...++++++++|||||+|++.+....
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 9999985 445789999999999999999876543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=147.22 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=95.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEE
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~ 119 (291)
+..++..+...++.+|||+|||+|..+..|+++ +.+|+|+|+|+.|++.|+++.... ...++++++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 344455566778899999999999999999988 789999999999999998875421 124799999
Q ss_pred ccccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 120 ADISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+.+++.. ++||+|++..++++++ +...+++++.++|||||++++.+..
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 999998764 6899999999999885 4567999999999999996665543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-21 Score=161.88 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=128.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
...+++.+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++.. ..++.++.+|+.+++.+ ++
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~ 108 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDA 108 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTC
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCC
Confidence 3455666666688999999999999999999874 2399999999999999887754 34799999999988765 89
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVS 210 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
||+|++..+++++++...+++++.++|||||.+++..+........ ...|... ..+.........++.....
T Consensus 109 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~ 180 (253)
T 3g5l_A 109 YNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADG-----RQDWYTD---ETGNKLHWPVDRYFNESMR 180 (253)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSS-----SCSCEEC---SSCCEEEEEECCTTCCCEE
T ss_pred eEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCc-----cccceec---cCCceEEEEeccccccceE
Confidence 9999999999999999999999999999999999987654321110 1112110 0000000000001111111
Q ss_pred EEEeeec-CCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCc
Q 022864 211 VVDHWLV-NGKHYAQTSEEWLKRMDNNLASIKPIMESTYGK 250 (291)
Q Consensus 211 ~~~~~~~-~~~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~ 250 (291)
...|.. ....|++|..+|.+.|.++||++....+...++
T Consensus 181 -~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~ 220 (253)
T 3g5l_A 181 -TSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAP 220 (253)
T ss_dssp -EEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCG
T ss_pred -EEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCCch
Confidence 112211 112355689999999999999988776555443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=156.92 Aligned_cols=155 Identities=10% Similarity=0.126 Sum_probs=120.6
Q ss_pred hHHHhhcCCChHHHHHhhCCCCCccccccCC--CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022864 9 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSD--ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 9 ~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~ 86 (291)
..++.+|+...++|+..+...+..+..-|.. .....+. ..++...-...+.+.++.+|||||||+|.++..++.+.+
T Consensus 67 ~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~-~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ 145 (298)
T 3fpf_A 67 SLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPR-YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVY 145 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHH-HHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCccc-HHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHcc
Confidence 5677899999999999887765332211000 0012222 344444444567889999999999999987765555556
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+++|+|+|+|+++++.|+++++..|+++++++++|+.+++ .++||+|++... +++..++++++.+.|||||++++.
T Consensus 146 ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 146 GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999999999999999999888888999999999875 588999998654 578899999999999999999987
Q ss_pred ee
Q 022864 167 HF 168 (291)
Q Consensus 167 ~~ 168 (291)
..
T Consensus 222 ~~ 223 (298)
T 3fpf_A 222 TY 223 (298)
T ss_dssp EC
T ss_pred cC
Confidence 64
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=148.22 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=107.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
..+++.+...++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.+++++...+++++.++.+|+.+++.+ ++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 455566677889999999999999999999885 6689999999999999999999988887899999999987765 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
||+|++..+++++++...+++++.++|||||.+++.++....
T Consensus 107 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 107 VDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred eeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 999999999999999999999999999999999998876543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=152.27 Aligned_cols=147 Identities=11% Similarity=0.052 Sum_probs=112.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---- 127 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---- 127 (291)
...+++.+...++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.+++++... ++..++.+...
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~ 105 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPK 105 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCG
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc------cceeeeeeccccccc
Confidence 455667778889999999999999999999987 789999999999999999876543 12333333222
Q ss_pred --CCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCCc----------------------ccccccCC
Q 022864 128 --EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF----------------------AYHFEDTN 181 (291)
Q Consensus 128 --~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----------------------~~~~~~~~ 181 (291)
.++||+|+++.+++|+ ++...+++++.++| |||+++++....... +.......
T Consensus 106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 184 (261)
T 3iv6_A 106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFRE 184 (261)
T ss_dssp GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEGGG
T ss_pred ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceehhh
Confidence 3789999999999987 45678999999999 999999986543110 00111134
Q ss_pred ccchhhhhccCCCCCCcHHHHHHhhc
Q 022864 182 DDDWITKYFFTGGTMPSANLLLYFQD 207 (291)
Q Consensus 182 ~~~w~~~~~~~~~~~~~~~~~~~~~~ 207 (291)
...|+.+++||+|.+|+...+.....
T Consensus 185 ~~~~i~~~~~p~g~~~~~~~~~~~~~ 210 (261)
T 3iv6_A 185 AGDVLDRALVPHGLIDKPTLLEWYRR 210 (261)
T ss_dssp TTHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred hhhHHHhccCCCCcccHHHHHHHHHh
Confidence 67899999999999998777765543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=148.85 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=107.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
.....+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++++.++.+|+.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 8 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred CCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 34456667778889999999999999999999987 459999999999999999999888887899999999998766
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++||+|++..+++|+++...+++++.++|||||++++.++..+
T Consensus 86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 7899999999999999999999999999999999999877654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=146.17 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=105.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 128 (291)
.....+++.+...++ +|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+++++...++ +++.++++|+.+++.+
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 445666677776666 9999999999999999988 688999999999999999999998887 4799999999998766
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++||+|++..+++|+++...+++++.++|||||.+++...
T Consensus 109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence 8899999999999999999999999999999999999764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=154.67 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=103.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-c-C
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-M-E 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~-~-~ 128 (291)
+..++..+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++.++.+|+.+++ . +
T Consensus 58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 45566665544 679999999999999999987 78999999999999999999988887 58999999999987 3 3
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++||+|++..+++|+++...+++++.++|||||++++..++..
T Consensus 135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 8999999999999999999999999999999999999887653
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-20 Score=160.74 Aligned_cols=204 Identities=15% Similarity=0.142 Sum_probs=142.7
Q ss_pred hhCCCCCccccccCCCCCCHHHH-------HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCC
Q 022864 25 VLGKYFKYSCCYFSDASKTLEDA-------EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNS 96 (291)
Q Consensus 25 ~~~~~~~y~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s 96 (291)
|+++.+.|++.++..+...+... +..+...+++.+...++.+|||||||+|.++..+++..+ ..+|+|+|+|
T Consensus 30 fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 109 (317)
T 1dl5_A 30 FLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS 109 (317)
T ss_dssp GCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC
T ss_pred hCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECC
Confidence 56666666666665432122222 125667778888888999999999999999999998865 3679999999
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC--Cc
Q 022864 97 KTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK--TF 173 (291)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~ 173 (291)
+.+++.++++++..++++++++.+|+.+.... ++||+|++..+++++. +.+.+.|||||++++...... ..
T Consensus 110 ~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~~~~~~~ 183 (317)
T 1dl5_A 110 RKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINLKLSRRQ 183 (317)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCBGGGTBC
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECCCCcccc
Confidence 99999999999998887899999999885443 7899999999999886 467889999999999865442 11
Q ss_pred ccccccCCccchhhhhccCCCCCCcHHHHHH-hhcCcEEEEeeecCCCcHHHHHHHHHH-HHHhcHHh
Q 022864 174 AYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLK-RMDNNLAS 239 (291)
Q Consensus 174 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~tl~~w~~-~l~~~~~~ 239 (291)
...........|..++++|.+.+|....... ........ ....|.+|++.|.. ++.+....
T Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~-----~~~~y~~tl~~~~~~~f~~~~~~ 246 (317)
T 1dl5_A 184 PAFLFKKKDPYLVGNYKLETRFITAGGNLGNLLERNRKLL-----REFPFNREILLVRSHIFVELVDL 246 (317)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCBCCGGGSCHHHHHHTTC-----CCCCEEEEEECTTHHHHHHHHHH
T ss_pred eEEEEEEeCCcEEEEEeccEEEEEccCccccccccchhhh-----hcccchhhccCcchhhhhhhhhh
Confidence 1100011234688888899887776432221 11111110 11226778888887 77655443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-19 Score=144.62 Aligned_cols=116 Identities=19% Similarity=0.298 Sum_probs=97.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-----CeEEEEccccCCc
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADISTFE 126 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~ 126 (291)
...+++.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++...+++ ++.++.+|+...+
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence 34444444456778999999999999999998776689999999999999999998776663 7999999997766
Q ss_pred cC-CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEe
Q 022864 127 ME-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. ++||+|++..+++|+++. ..+++++.++|||||.+++..
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 55 789999999999999754 899999999999999665543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=146.02 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=102.1
Q ss_pred HHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022864 53 ELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 131 (291)
..+++.+. ..++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.+++++...+ ++.++.+|+.+.+.+++|
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~f 110 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFEEKY 110 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCCSCE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCCCCc
Confidence 44445444 457889999999999999999999888999999999999999988875544 799999999998766899
Q ss_pred cEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeeccCC
Q 022864 132 DRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
|+|++..+++++++.. .+++++.++|||||++++.++....
T Consensus 111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 9999999999997655 5999999999999999998876644
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-19 Score=144.93 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-----CeEEEEccccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADIST 124 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~ 124 (291)
..+..+++.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++...+++ +++++.+|+..
T Consensus 16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (219)
T 3jwg_A 16 QRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY 95 (219)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc
Confidence 3344444444446788999999999999999998876689999999999999999998776653 79999999977
Q ss_pred CccC-CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeec
Q 022864 125 FEME-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+.. ++||+|++..+++|+++. ..+++++.++|||||.+++ ++.
T Consensus 96 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~-~~~ 142 (219)
T 3jwg_A 96 RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS-TPN 142 (219)
T ss_dssp CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE-EEB
T ss_pred cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEE-ccc
Confidence 6654 889999999999999754 7899999999999995544 443
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=150.38 Aligned_cols=119 Identities=21% Similarity=0.352 Sum_probs=105.4
Q ss_pred HHHHHHHHHc-CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 50 AMLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
..+..+++.+ ...++.+|||+|||+|.++..+++.+| +.+|+|+|+|+.+++.+++++...+. ++.++.+|+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~ 86 (284)
T 3gu3_A 8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL 86 (284)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC
T ss_pred HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc
Confidence 3344555444 456789999999999999999999887 48999999999999999999887765 89999999999877
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++||+|++..+++++++...+++++.++|||||++++.++.
T Consensus 87 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 87 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 789999999999999999999999999999999999998876
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=139.77 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=100.0
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+++++.++.+|+.+.+..++||+|
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v 101 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFI 101 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEE
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEE
Confidence 444455667789999999999999999987 789999999999999999999888887899999999987666889999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++..++++++ +...+++++.++|||||.+++.++.
T Consensus 102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 9999999996 8899999999999999998876654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-19 Score=145.81 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=96.0
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. .++.++.+|+.+++.+++||+|
T Consensus 37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHhhccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCCCCeEEE
Confidence 333334457889999999999999999987 7899999999999999887654 3789999999998766899999
Q ss_pred EEcccccccccHHH--HHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEHMKNYQN--LLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++..+++++++... +++++.++|||||.+++.++...
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 99999999988776 99999999999999999886543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=141.98 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=96.0
Q ss_pred HHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 54 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 54 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
.+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++ .+.+++.++.+|+.++...++||
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D 109 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTPDRQWD 109 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCCSSCEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCCCCcee
Confidence 3444433 567789999999999999999988 7899999999999988876 55568999999999984448999
Q ss_pred EEEEcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|++..+++|+++. ..+++++.++|||||.+++.+++.
T Consensus 110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999999999774 889999999999999999998866
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.7e-19 Score=148.33 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=103.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+....+++.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.++++ .+++.++.+|+.+++.++
T Consensus 20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~ 94 (259)
T 2p35_A 20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKPAQ 94 (259)
T ss_dssp HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCccC
Confidence 344567777777888999999999999999999988888999999999999988876 347999999999987448
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+||+|+++.+++++++...+++++.++|||||++++.+++..
T Consensus 95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 136 (259)
T 2p35_A 95 KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNL 136 (259)
T ss_dssp CEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCT
T ss_pred CcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCC
Confidence 899999999999999999999999999999999999987653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=140.52 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=111.0
Q ss_pred hHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC
Q 022864 9 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 88 (291)
Q Consensus 9 ~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~ 88 (291)
+.+...||.....|...+........ . ....+..++... +.+|||+|||+|.++..+++. +.
T Consensus 3 ~~~~~~y~~~a~~y~~~~~~~~~~~~--------~----~~~~l~~~~~~~----~~~vLDiGcG~G~~~~~l~~~--~~ 64 (203)
T 3h2b_A 3 DDVSKAYSSPTFDAEALLGTVISAED--------P----DRVLIEPWATGV----DGVILDVGSGTGRWTGHLASL--GH 64 (203)
T ss_dssp CHHHHHHHCTTTCHHHHTCSSCCTTC--------T----THHHHHHHHHHC----CSCEEEETCTTCHHHHHHHHT--TC
T ss_pred HHHHHHHhhHHHHHHHHhhhhccccH--------H----HHHHHHHHhccC----CCeEEEecCCCCHHHHHHHhc--CC
Confidence 35667888887877666543222100 0 123344444332 779999999999999999987 77
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEE
Q 022864 89 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+|+|+|+|+.+++.++++ .+++.++.+|+.+++.+ ++||+|++..+++|++ +...+++++.++|||||.+++
T Consensus 65 ~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 139 (203)
T 3h2b_A 65 QIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139 (203)
T ss_dssp CEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999988876 23799999999998765 8999999999999996 899999999999999999999
Q ss_pred EeeccCC
Q 022864 166 HHFCHKT 172 (291)
Q Consensus 166 ~~~~~~~ 172 (291)
..+....
T Consensus 140 ~~~~~~~ 146 (203)
T 3h2b_A 140 SFFSGPS 146 (203)
T ss_dssp EEECCSS
T ss_pred EEccCCc
Confidence 8876543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-18 Score=137.53 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
....++..+...++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++++..++++++++.+|+.+.... .
T Consensus 28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 335566777888999999999999999999999987799999999999999999999998887899999999775444 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|++..+++ +...+++.+.+.|||||++++..+..
T Consensus 108 ~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 108 DPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp CCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred CCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 899999998775 77899999999999999999976643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=141.76 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=90.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-----------------hCCCCeEEEEcccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-----------------LELQNVEIIVADIS 123 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------------~~~~~v~~~~~d~~ 123 (291)
..++.+|||+|||+|..+..|++. +.+|+|||+|+.+++.|+++... ....+++++++|+.
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 356789999999999999999987 78999999999999998765431 01247999999999
Q ss_pred CCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 124 TFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 124 ~~~~~--~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++.. ++||+|++..++++++ +...+++++.++|||||++++.+..
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 98765 7899999999999884 4677999999999999999766554
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=144.91 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=116.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-ASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~i~~~ 137 (291)
..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ +.++.+|+.+. +.+ ++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 356789999999999999999987 77999999999999887753 78899998875 434 889999999
Q ss_pred ccccccc--cHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCC-CCCcHHHHHHh--hcCcEEE
Q 022864 138 EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGG-TMPSANLLLYF--QDDVSVV 212 (291)
Q Consensus 138 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~--~~~~~~~ 212 (291)
.+++|++ +...+++++.++|||||++++.+++.... ..+...+..+.. ...+...+..+ ..++.++
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 9999997 66999999999999999999998875432 112222223332 22333333332 2456554
Q ss_pred EeeecC---------CCcHHHHHHHHHHH-HHhcHHhHhhh
Q 022864 213 DHWLVN---------GKHYAQTSEEWLKR-MDNNLASIKPI 243 (291)
Q Consensus 213 ~~~~~~---------~~~y~~tl~~w~~~-l~~~~~~~~~~ 243 (291)
+..... +.+ .+++..|.++ +..+...+...
T Consensus 180 ~~~~~~~~~~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~ 219 (240)
T 3dli_A 180 KIEFFEECEELTKLAKID-SNTVSEEVIRVINENIEKLNRI 219 (240)
T ss_dssp EEEEECCCCTTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCcccccccccc-cccccHHHHHhhhhhHHHHHhh
Confidence 433221 123 5678889998 77666665544
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=156.28 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=98.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHh-----C-C--CCeEEEEccccCC------
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL-----E-L--QNVEIIVADISTF------ 125 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~--~~v~~~~~d~~~~------ 125 (291)
..++.+|||+|||+|..+..+++.. |+.+|+|+|+|+.+++.+++++... | . +++.++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999999999999875 6789999999999999999987654 3 2 4899999999986
Q ss_pred ccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 126 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 126 ~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+.+ ++||+|+++.+++++++...+++++.++|||||++++.++...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 207 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD 207 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence 555 7899999999999999999999999999999999999876543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=145.40 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHH------HHHHHHHHHHHhCC-C
Q 022864 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKT------QKEFIEEQCRVLEL-Q 113 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~------~~~~a~~~~~~~~~-~ 113 (291)
..+..++.+....+++.+...++.+|||||||+|.++..+++.+ |..+|+|+|+|+. +++.+++++...++ +
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~ 101 (275)
T 3bkx_A 22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence 45778888889999999988999999999999999999999885 5589999999997 99999999988777 5
Q ss_pred CeEEEEcc-c--cCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 114 NVEIIVAD-I--STFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 114 ~v~~~~~d-~--~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+++++.+| + ..++.+ ++||+|++..+++|+++...+++.+.++++|||.+++.++....
T Consensus 102 ~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 102 RLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp GEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred ceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 79999998 3 334434 78999999999999999888888888888889999998877643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=142.47 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=97.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... +++.++++|+.+.+..++||+|
T Consensus 43 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~fD~v 118 (216)
T 3ofk_A 43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFSTAELFDLI 118 (216)
T ss_dssp HHHHTTTSSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCCSCCEEEE
T ss_pred HHHHcccCCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCCCCCccEE
Confidence 333456677889999999999999999987 579999999999999999887653 3799999999998855899999
Q ss_pred EEcccccccccH---HHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFEHMKNY---QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++.+++|+++. ..+++++.++|||||.+++.++..
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999999876 567999999999999999987754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=142.63 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=91.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c--c-CCCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E--M-EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~--~-~~~~D~i~~~~ 138 (291)
++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.+++++...+++++.++.+|+.++ + . +++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999998899999999999999999999999988899999999884 2 2 38899999985
Q ss_pred cccccc--cH------HHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFEHMK--NY------QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~--~~------~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+..+.+ .. ..+++.+.++|||||++++.+..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 544332 11 25999999999999999997753
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=143.89 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc-cc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~-~l 140 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ++.++.+|+.+++.+++||+|++.. ++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDST 112 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCccCCceEEEEcCccc
Confidence 36789999999999999999987 67999999999999999999888776 7999999999877668899999998 99
Q ss_pred ccc---ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 141 EHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|+ .+...+++++.++|||||.+++..++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 999 678899999999999999999977654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=144.04 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=96.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHh-C-CCCeEEEEccccCCccC-------CC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL-E-LQNVEIIVADISTFEME-------AS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~-~~~v~~~~~d~~~~~~~-------~~ 130 (291)
..++.+|||||||+|..+..+++.+ ++.+|+|+|+|+.+++.+++++... + .+++.++++|+.+++.. ++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 3578999999999999999999875 7899999999999999999998876 2 35899999999987643 48
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++..+++|+ ++..+++++.++|||||.+++.....
T Consensus 114 fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 114 IDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred eeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 9999999999999 99999999999999999999855543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=135.14 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=96.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~ 138 (291)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++++..++++++++++|+.+... .++||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 56889999999999999988875 356899999999999999999999888789999999988642 37899999999
Q ss_pred ccccc-ccHHHHHHHHHh--ccccCeeEEEEeeccCC
Q 022864 139 MFEHM-KNYQNLLKKISK--WMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 139 ~l~~~-~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~ 172 (291)
++++. ++...+++.+.+ +|+|||++++.......
T Consensus 122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~ 158 (189)
T 3p9n_A 122 PYNVDSADVDAILAALGTNGWTREGTVAVVERATTCA 158 (189)
T ss_dssp CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence 98876 778899999999 99999999998876544
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=145.23 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... ++.++.+|+.+...+++||+|++..+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 114 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQLPRRYDNIVLTHVLE 114 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCcCCcccEEEEhhHHH
Confidence 46779999999999999999987 45899999999999998876532 7999999999885458899999999999
Q ss_pred ccccHHHHHHHHH-hccccCeeEEEEeeccCC
Q 022864 142 HMKNYQNLLKKIS-KWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~ 172 (291)
|++++..+++++. ++|||||++++.+++...
T Consensus 115 ~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 115 HIDDPVALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred hhcCHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 9999999999999 999999999999886543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=146.98 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
.++.+.+.. ..+.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|++ .+++.++++|+++++.+ +
T Consensus 29 l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 29 LFRWLGEVA--PARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccCC
Confidence 344454443 34569999999999999999987 6799999999999877653 24899999999998877 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+||+|+|..++|++ +..++++++.++|||||+|++...+..
T Consensus 99 sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 99 SVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99999999999887 578899999999999999998776554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=146.07 Aligned_cols=113 Identities=24% Similarity=0.327 Sum_probs=99.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
..+++.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. +++.++.+|+.+++.+++||
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD 119 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVDKPLD 119 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCSSCEE
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcCCCcC
Confidence 3455566677889999999999999999997 4889999999999999887754 47889999999987668999
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+|++..+++++++...+++++.++|||||++++..+....
T Consensus 120 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~ 159 (279)
T 3ccf_A 120 AVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGN 159 (279)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence 9999999999999999999999999999999998876543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=133.84 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCC-ccC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-EME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~ 128 (291)
....+++.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++...+++ ++ ++.+|..+. +..
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence 335566667778899999999999999999998888899999999999999999999988886 78 888888553 332
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|++..++++ ..+++.+.+.|||||++++..+..
T Consensus 92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp CSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred CCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 78999999999876 678999999999999999977644
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=143.98 Aligned_cols=106 Identities=22% Similarity=0.352 Sum_probs=95.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++.++.+|+.+.+..++||+|+++.+++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccccCCccEEEEccchh
Confidence 46889999999999999999987 77999999999999999999998888 8999999999977678999999999999
Q ss_pred cc--ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 142 HM--KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+ ++...+++++.++|||||.+++.....
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 98 456799999999999999987765533
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-18 Score=133.29 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDR 133 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 133 (291)
+++.+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++ .+++.+..+| .+.+ ++||+
T Consensus 9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~ 78 (170)
T 3i9f_A 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDF 78 (170)
T ss_dssp THHHHHSSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEE
T ss_pred HHHhcCcCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEE
Confidence 3444456788899999999999999999874 4999999999999988876 3489999999 3333 78999
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
|++..+++++++...+++++.+.|||||++++.++....
T Consensus 79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 999999999999999999999999999999998876554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=142.69 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=98.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
+..++.....++ .+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. .++.++.+|+.+++..++
T Consensus 56 l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 132 (235)
T 3lcc_A 56 IVHLVDTSSLPL-GRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTEL 132 (235)
T ss_dssp HHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSC
T ss_pred HHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCC
Confidence 344455444444 49999999999999999864 88999999999999999998876433 479999999999876689
Q ss_pred ccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++..++++++ +...+++++.++|||||.+++..+..
T Consensus 133 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 133 FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp EEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred eeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 99999999999997 88999999999999999999877654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-18 Score=145.31 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=96.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----CCeEEEEccccCCc---cC
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEIIVADISTFE---ME 128 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~~---~~ 128 (291)
.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+. .++.+..+|+.+++ .+
T Consensus 50 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 127 (293)
T 3thr_A 50 LGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA 127 (293)
T ss_dssp HHHHHHTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC
T ss_pred HHHhcccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc
Confidence 33333456789999999999999999987 67999999999999999988754332 36889999998876 34
Q ss_pred -CCccEEEEc-cccccccc-------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 -ASYDRIYSI-EMFEHMKN-------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 -~~~D~i~~~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|+|. .+++|+.+ ...+++++.++|||||++++..++.
T Consensus 128 ~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 128 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp TTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 899999998 89999988 9999999999999999999988764
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=141.83 Aligned_cols=104 Identities=13% Similarity=0.247 Sum_probs=93.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++ ..+.+++.++.+|+.+++.+ ++||+|++..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 4567889999999999999999976 789999999999999999887 33345899999999988765 7899999999
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEE
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+++++++...+++++.++|||||.+++.
T Consensus 113 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 9999999999999999999999999987
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-19 Score=147.42 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=110.3
Q ss_pred hHHHhhcCCChHHHHHhhCCCCCccc--c-ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022864 9 KAKEQHYELPTSFFKLVLGKYFKYSC--C-YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 9 ~~~~~~yd~~~~~~~~~~~~~~~y~~--~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 85 (291)
...+.+|+.++++...|......|.. . +.......+.......+..+...+ ..++.+|||||||+|.++..+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~ 82 (236)
T 1zx0_A 4 PSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP 82 (236)
T ss_dssp ----CCSCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSC
T ss_pred CCCCCccCCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcC
Confidence 34456889999999988887777742 1 111111111112223334443333 4578899999999999999997643
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CCccEEEE-cccc----cccccHHHHHHHHHhcc
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-ASYDRIYS-IEMF----EHMKNYQNLLKKISKWM 157 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~i~~-~~~l----~~~~~~~~~l~~~~~~L 157 (291)
..+|+|+|+|+.+++.|+++....+ .++.++.+|+.++ +.+ ++||+|++ ...+ .+..+...+++++.++|
T Consensus 83 -~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~L 160 (236)
T 1zx0_A 83 -IDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLL 160 (236)
T ss_dssp -EEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHE
T ss_pred -CCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhc
Confidence 4589999999999999999887666 3799999999987 555 78999999 4443 12244567899999999
Q ss_pred ccCeeEEEEee
Q 022864 158 KEDTLLFVHHF 168 (291)
Q Consensus 158 kpgG~l~~~~~ 168 (291)
||||++++...
T Consensus 161 kpgG~l~~~~~ 171 (236)
T 1zx0_A 161 KPGGVLTYCNL 171 (236)
T ss_dssp EEEEEEEECCH
T ss_pred CCCeEEEEEec
Confidence 99999988554
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-18 Score=142.06 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
..........+++.+...++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.+++++... +++.++.+|+.+
T Consensus 75 ~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~ 151 (254)
T 1xtp_A 75 HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMET 151 (254)
T ss_dssp HHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGG
T ss_pred CHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHH
Confidence 34444555677777777788999999999999999999875 568999999999999999876543 479999999998
Q ss_pred CccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 125 FEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++.+ ++||+|++..+++|+ .+...+++++.++|||||++++.++.
T Consensus 152 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 7765 789999999999999 56889999999999999999998763
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=137.21 Aligned_cols=120 Identities=19% Similarity=0.273 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
+......+.+.+.+ .++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++....+ .++.++.+|+.++
T Consensus 23 ~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~ 97 (227)
T 1ve3_A 23 SRIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL 97 (227)
T ss_dssp HHHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcC
Confidence 33344445554443 347899999999999999999874 499999999999999999988776 4899999999987
Q ss_pred ccC-CCccEEEEccc--ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 126 EME-ASYDRIYSIEM--FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~~~-~~~D~i~~~~~--l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+.+ ++||+|+++.+ +++..+...+++++.++|||||.+++..++.
T Consensus 98 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 98 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 655 78999999999 6666788899999999999999999988764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=144.52 Aligned_cols=107 Identities=12% Similarity=0.168 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.+++++...+..++.++.+|+.+++.+ ++||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 68899999999999999998775 569999999999999999988765444689999999887765 6899999999999
Q ss_pred cccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022864 142 HMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++++ ...+++++.++|||||++++.++..
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence 9977 4589999999999999999987754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=132.75 Aligned_cols=117 Identities=15% Similarity=0.314 Sum_probs=102.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCccCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~ 129 (291)
...+++.+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++...++++ +.++.+|+.+....+
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 445666667778899999999999999999987 7899999999999999999999888865 999999998854457
Q ss_pred CccEEEEcccccc-cccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|+++.++++ ..+...+++.+.++|+|||.+++..+..
T Consensus 119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 8999999998887 4677899999999999999999988754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-18 Score=138.23 Aligned_cols=109 Identities=16% Similarity=0.249 Sum_probs=94.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 131 (291)
+..++.. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ++.++.+|+.+++..++|
T Consensus 34 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~f 103 (211)
T 3e23_A 34 LTKFLGE--LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAIDAY 103 (211)
T ss_dssp HHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCCCSCE
T ss_pred HHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCCCCCcE
Confidence 4444443 346889999999999999999987 779999999999999998876 467888999988755899
Q ss_pred cEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|++..+++|++ +...+++++.++|||||++++..+..
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 9999999999997 78899999999999999999987644
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.9e-18 Score=143.61 Aligned_cols=114 Identities=16% Similarity=0.250 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
.....+++.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. ++.++.+|+.+++.+
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCC
Confidence 3456666777778899999999999999999997 4889999999999887665432 799999999998766
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
++||+|++..+++|+++...+++++.++|| ||++++.++....
T Consensus 93 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~ 135 (261)
T 3ege_A 93 KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRL 135 (261)
T ss_dssp TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence 899999999999999999999999999999 9999988876543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=137.88 Aligned_cols=118 Identities=15% Similarity=0.320 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...+..++......++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. ++.++++|+.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~ 103 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK 103 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC
Confidence 345566666666677889999999999999999986 78999999999999999999988776 799999999987766
Q ss_pred CCccEEEEcc-ccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 129 ASYDRIYSIE-MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~-~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++||+|++.. .+++. .+...+++++.++|||||.+++..++
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 8899999864 34444 46788999999999999999987765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=141.91 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=95.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~D~i~~~ 137 (291)
..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++....+. .++.++.+|+.+.+. +++||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 4678899999999999999988762 45999999999999999999887766 469999999998765 3789999999
Q ss_pred ccccc----cccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 138 EMFEH----MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 138 ~~l~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++++ ..+...+++++.++|||||.+++.+++.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 99977 4678899999999999999999988765
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=135.06 Aligned_cols=112 Identities=18% Similarity=0.120 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
.....+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++++++++.+|+.+....
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 44556677778889999999999999999999988 789999999999999999999988887899999999886544
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++||+|++..+++++.+ .+.+.|||||++++..+.
T Consensus 142 ~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 78999999999998875 588999999999998776
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=138.59 Aligned_cols=106 Identities=23% Similarity=0.328 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ...++.++.+|+.+++.+ ++||+|++..++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 46789999999999999999987 789999999999998887764 224799999999998765 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+|+++...+++++.++|+|||++++.+++...
T Consensus 127 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 127 EWTEEPLRALNEIKRVLKSDGYACIAILGPTA 158 (242)
T ss_dssp TSSSCHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred hhccCHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence 99999999999999999999999998876543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-17 Score=132.66 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=96.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~ 130 (291)
..++..+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++..+++ +++++.+|+.+.... ..
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 34566677888999999999999999999987 889999999999999999999999986 899999999984333 68
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++...+ +.. +++.+.+.|||||++++..+..
T Consensus 123 ~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 123 PEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred CCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 9999988754 456 9999999999999999987643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=135.61 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=92.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
..++..+.. ++.+|||+|||+|.++..+ +. +|+|+|+|+.+++.++++. +++.++.+|+.+++.+ ++
T Consensus 27 ~~~l~~~~~-~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~ 95 (211)
T 2gs9_A 27 ERALKGLLP-PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGES 95 (211)
T ss_dssp HHHHHTTCC-CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSC
T ss_pred HHHHHHhcC-CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCc
Confidence 344444433 7889999999999998877 44 9999999999999888765 4789999999988765 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
||+|++..+++|+++...+++++.++|||||.+++.+++..
T Consensus 96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 96 FDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999988654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=146.76 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=99.5
Q ss_pred CCCCCCEEEEEcCCcchHHHHHH-HHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIA-QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
...++.+|||||||+|..+..++ ...|+.+|+|+|+|+.+++.+++++...++. +++++++|+.+++.+++||+|+++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 35678999999999999999986 4567889999999999999999999887774 599999999998766899999999
Q ss_pred ccccccccHHH---HHHHHHhccccCeeEEEEeeccCC
Q 022864 138 EMFEHMKNYQN---LLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 138 ~~l~~~~~~~~---~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.+++|+++... +++++.++|||||++++.++....
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 232 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPP 232 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCT
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 99999977665 799999999999999998776543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=135.16 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=95.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
..++.+|||+|||+|..+..++.. ++.+|+|+|+|+.+++.+++++...+. ++.++.+|+.+++.+ ++||+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCCCCceeEEEEcCh
Confidence 356789999999999985544434 378999999999999999999887764 799999999998765 78999999999
Q ss_pred cccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 140 FEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 140 l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
++|+ .+...+++++.++|||||++++.+++...
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 9999 78899999999999999999999887654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=131.88 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=89.1
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEEc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~ 137 (291)
...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..+++++++++.+...+. .+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 3567899999999999999999987 8899999999999999999999988878999998887753 23789999987
Q ss_pred c-cccc--------cccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 E-MFEH--------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~-~l~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. .+.+ ..+...+++++.++|||||.+++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 3 2222 144567899999999999999987653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=138.66 Aligned_cols=112 Identities=13% Similarity=0.208 Sum_probs=97.0
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
.+...+...++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++++... .++.++.+|+.+.+.+ ++|
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCc
Confidence 3445566668899999999999999999987 55 999999999999988876432 3699999999987765 789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|++..+++++++...+++++.++|||||++++.++..
T Consensus 109 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 109 DLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred eEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 999999999999999999999999999999999988654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-17 Score=133.69 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~~~ 138 (291)
.++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.+++++...+++++.++.+|+.+++ .+ ++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 45789999999999999999999888999999999999999999999988888999999999865 33 7899999997
Q ss_pred cccccc--------cHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..+.. ....+++.+.++|+|||.+++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 654432 236799999999999999998653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=143.06 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=90.6
Q ss_pred HHHHHHcC-CCCCCEEEEEcCCcchHHHH----HHHHCCCCEE--EEEcCCHHHHHHHHHHHHHh-CCCCeE--EEEccc
Q 022864 53 ELYCERSR-LEDGHTVLDVGCGWGSLSLY----IAQKYSNCKI--TGICNSKTQKEFIEEQCRVL-ELQNVE--IIVADI 122 (291)
Q Consensus 53 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~----la~~~~~~~v--~~vD~s~~~~~~a~~~~~~~-~~~~v~--~~~~d~ 122 (291)
..++..++ ..++.+|||||||+|.++.. ++.++|+..| +|+|+|++|++.+++++... +++++. +..+++
T Consensus 41 ~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~ 120 (292)
T 2aot_A 41 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 120 (292)
T ss_dssp HHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCH
T ss_pred hhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecch
Confidence 33333333 35678999999999986653 3445566754 99999999999999987653 445554 456666
Q ss_pred cCCc------c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 123 STFE------M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 123 ~~~~------~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+++ . +++||+|++..+++|++|+.++++++.++|||||++++.....
T Consensus 121 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 121 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 5543 2 3789999999999999999999999999999999999986643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-18 Score=134.83 Aligned_cols=113 Identities=12% Similarity=0.250 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 127 (291)
+.....+...+ .+..+|||||||+|.++..++...|+++|+++|+|+.|++.+++++...|.. ++.+ +|.....+
T Consensus 37 d~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~ 112 (200)
T 3fzg_A 37 NDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY 112 (200)
T ss_dssp HHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT
T ss_pred HHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC
Confidence 33445555544 4577999999999999999998888999999999999999999999998885 5666 66665555
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+++||+|++..++|++++.+..+.++.+.|+|||+++-
T Consensus 113 ~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 113 KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 58899999999999997777788899999999998654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=144.19 Aligned_cols=106 Identities=19% Similarity=0.360 Sum_probs=90.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------------------------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------------------------ 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------------------------ 112 (291)
++.+|||||||+|.++..+++.+++.+|+|+|+|+.+++.|++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 67899999999999999999998889999999999999999987654331
Q ss_pred ----------------------------CCeEEEEccccCCc------cCCCccEEEEcccccccc------cHHHHHHH
Q 022864 113 ----------------------------QNVEIIVADISTFE------MEASYDRIYSIEMFEHMK------NYQNLLKK 152 (291)
Q Consensus 113 ----------------------------~~v~~~~~d~~~~~------~~~~~D~i~~~~~l~~~~------~~~~~l~~ 152 (291)
.++.|+++|+.... ..++||+|+|..+++|+. +...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998654 237899999999998775 77889999
Q ss_pred HHhccccCeeEEEEee
Q 022864 153 ISKWMKEDTLLFVHHF 168 (291)
Q Consensus 153 ~~~~LkpgG~l~~~~~ 168 (291)
+.++|||||+|++...
T Consensus 206 ~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHEEEEEEEEEECC
T ss_pred HHHHhCCCcEEEEecC
Confidence 9999999999998643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-18 Score=139.61 Aligned_cols=201 Identities=16% Similarity=0.159 Sum_probs=132.7
Q ss_pred cccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHH
Q 022864 4 AIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 83 (291)
Q Consensus 4 ~~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~ 83 (291)
+......+..+||...+.|......... ..........+++.+...++.+|||+|||+|.++..+++
T Consensus 6 m~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~ 72 (227)
T 3e8s_A 6 MRNPEDALLDSWHQNAQAWIDAVRHGAI-------------ESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALAD 72 (227)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHTCC-------------HHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHT
T ss_pred hhcHHHHHHHHHHhhHHHHHHHhccccc-------------ccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHH
Confidence 3455567778888766666554322111 111111223344444445678999999999999999998
Q ss_pred HCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---ccC--CCccEEEEcccccccccHHHHHHHHHhccc
Q 022864 84 KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMK 158 (291)
Q Consensus 84 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lk 158 (291)
. +.+|+|+|+|+.+++.++++ .++.+..+|+.++ +.. .+||+|++..+++ ..+...+++++.++||
T Consensus 73 ~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~ 143 (227)
T 3e8s_A 73 R--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLV 143 (227)
T ss_dssp T--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEE
T ss_pred C--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhC
Confidence 7 77999999999999888775 2677888888776 322 5699999999998 8889999999999999
Q ss_pred cCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHH
Q 022864 159 EDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238 (291)
Q Consensus 159 pgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~ 238 (291)
|||++++.+++........ -...|....+..- ..... ....+..+..+|.+.|.++||
T Consensus 144 pgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------~~~~~-------~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 144 PGGALVIQTLHPWSVADGD---YQDGWREESFAGF------------AGDWQ-------PMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp EEEEEEEEECCTTTTCTTC---CSCEEEEECCTTS------------SSCCC-------CEEEEECCHHHHHHHHHHTTE
T ss_pred CCeEEEEEecCccccCccc---cccccchhhhhcc------------ccCcc-------cceEEEecHHHHHHHHHHcCC
Confidence 9999999988765432210 0122221110000 00000 001123478899999999999
Q ss_pred hHhhhHHhcc
Q 022864 239 SIKPIMESTY 248 (291)
Q Consensus 239 ~~~~~~~~~~ 248 (291)
++.+..++..
T Consensus 202 ~~~~~~~~~~ 211 (227)
T 3e8s_A 202 RLVSLQEPQH 211 (227)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEecCCC
Confidence 9887644333
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=140.66 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=104.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 129 (291)
....+++.++..++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.+.
T Consensus 190 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~ 267 (369)
T 3gwz_A 190 EAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD 267 (369)
T ss_dssp HHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS
T ss_pred hHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCC
Confidence 345667777778889999999999999999999999999999999 9999999999988887 579999999984 3334
Q ss_pred CccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.||+|++..+++++++.. ++++++.+.|||||++++.++..+
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 899999999999997665 799999999999999999887554
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=136.39 Aligned_cols=108 Identities=23% Similarity=0.431 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccccCCccC-CCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~~D~i~ 135 (291)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ .++.++.+|+..++.+ ++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 47889999999999999999987 78999999999999999998876665 2589999999998765 8899999
Q ss_pred EcccccccccHH---HHHHHHHhccccCeeEEEEeeccC
Q 022864 136 SIEMFEHMKNYQ---NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 136 ~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+..+++++++.. .+++++.++|||||++++.++...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 999999998877 899999999999999999887653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=139.81 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=103.8
Q ss_pred HHHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022864 52 LELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 52 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 128 (291)
...+++.++. .++.+|||+|||+|..+..+++.+|+.+++++|++ .+++.+++++...+++ +++++.+|+.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence 3456666666 77899999999999999999999988999999999 9999999999888874 699999999986655
Q ss_pred CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 129 ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
..||+|++..+++++ ++...+++++.+.|+|||++++.++...
T Consensus 231 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 569999999999999 4557899999999999999999877543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=136.93 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=111.2
Q ss_pred hHHHHHhhCCCCCccc-----cccCC---CCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCc---chHHHHHHHHCC
Q 022864 19 TSFFKLVLGKYFKYSC-----CYFSD---ASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGW---GSLSLYIAQKYS 86 (291)
Q Consensus 19 ~~~~~~~~~~~~~y~~-----~~~~~---~~~~l~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~---G~~~~~la~~~~ 86 (291)
..+|..+++...+|.. ..+.. ........+...+..+++.+. ..+..+|||||||+ |.++..+++..|
T Consensus 24 ar~~d~~l~g~~~~~~d~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p 103 (274)
T 2qe6_A 24 ARVYDALLGGKDNFEADRALADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNP 103 (274)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCT
T ss_pred HHHHHHhcCCccCCHHHHHHHHHHHHhcchhHHHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCC
Confidence 5677777776555421 00000 001123334445555555554 34457999999999 998888877788
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----------cC-CCccEEEEccccccccc--HHHHHHH
Q 022864 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----------ME-ASYDRIYSIEMFEHMKN--YQNLLKK 152 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----------~~-~~~D~i~~~~~l~~~~~--~~~~l~~ 152 (291)
+.+|+++|+|+.|++.+++++.. .+++.++.+|+.+.. .+ .+||+|++..++||+++ ...++++
T Consensus 104 ~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~ 181 (274)
T 2qe6_A 104 DARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGA 181 (274)
T ss_dssp TCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHH
T ss_pred CCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHH
Confidence 89999999999999999988743 247999999997632 22 57999999999999976 8999999
Q ss_pred HHhccccCeeEEEEeecc
Q 022864 153 ISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 153 ~~~~LkpgG~l~~~~~~~ 170 (291)
+.++|+|||+|++.....
T Consensus 182 ~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 182 YRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHSCTTCEEEEEEEBC
T ss_pred HHHhCCCCcEEEEEEecC
Confidence 999999999999988754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-17 Score=133.78 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~~~ 138 (291)
.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|++++...+++++.++.+|+.+++ .+ +.||.|+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 35779999999999999999999889999999999999999999999888888999999998864 33 7899999876
Q ss_pred ccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..+... ...+++.+.++|||||.+++.+.
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 5443321 36789999999999999998764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=142.36 Aligned_cols=119 Identities=11% Similarity=0.229 Sum_probs=99.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~ 127 (291)
....+++.+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ .++.++++|+.+++.
T Consensus 71 ~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 71 EAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34455555554444 9999999999999999987 78999999999999999999887663 479999999999877
Q ss_pred CCCccEEEEc-ccccccc--cHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 128 EASYDRIYSI-EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 128 ~~~~D~i~~~-~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+++||+|++. .++++++ +...+++++.++|||||+|++.+++...
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 7899999865 5677664 4688999999999999999999887653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=133.23 Aligned_cols=134 Identities=19% Similarity=0.341 Sum_probs=105.1
Q ss_pred hcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEE
Q 022864 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI 93 (291)
Q Consensus 14 ~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~v 93 (291)
.||.-.+.|...... ..| ......+...+ .++.+|||+|||+|.++..+++. .+|+|+
T Consensus 3 ~y~~~a~~yd~~~~~-~~~----------------~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~---~~v~~v 60 (243)
T 3d2l_A 3 AYEQFAYVYDELMQD-VPY----------------PEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH---YEVTGV 60 (243)
T ss_dssp ---CTTHHHHHHTTT-CCH----------------HHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT---SEEEEE
T ss_pred hHHHHHHHHHHhhhc-ccH----------------HHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC---CeEEEE
Confidence 467777777765432 111 22334444443 45689999999999999998865 699999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc-ccccc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 94 CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MFEHM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 94 D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+|+.+++.++++....+. ++.++.+|+.+.+.+++||+|++.. +++|+ .+...+++++.++|||||.+++..++
T Consensus 61 D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 61 DLSEEMLEIAQEKAMETNR-HVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp ESCHHHHHHHHHHHHHTTC-CCEEEECCGGGCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCHHHHHHHHHhhhhcCC-ceEEEEcChhhcCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9999999999999887764 7999999999877668899999986 89988 56778999999999999999997765
Q ss_pred c
Q 022864 170 H 170 (291)
Q Consensus 170 ~ 170 (291)
.
T Consensus 140 ~ 140 (243)
T 3d2l_A 140 P 140 (243)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-17 Score=133.64 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ++.++.+|+.+.+.+ ++||+|++....
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 104 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVSIFCH 104 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEEECCC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEEEhhc
Confidence 456 9999999999999999976 77999999999999999999988877 899999999988755 789999996433
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.+..+...+++++.++|||||.+++.++....
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 33357889999999999999999999886544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=141.40 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=99.4
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDR 133 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~ 133 (291)
+++.++..+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.+.+||+
T Consensus 161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~ 238 (332)
T 3i53_A 161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGG 238 (332)
T ss_dssp GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSE
T ss_pred HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcE
Confidence 34444556678999999999999999999999999999999 9999999999988887 579999999974 33348999
Q ss_pred EEEcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|++..+++++++. .++++++++.|||||++++.++..
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 9999999999774 889999999999999999987644
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=140.82 Aligned_cols=117 Identities=10% Similarity=0.092 Sum_probs=103.2
Q ss_pred HHHHHcCCCC-CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cCC
Q 022864 54 LYCERSRLED-GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--MEA 129 (291)
Q Consensus 54 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~ 129 (291)
.+++.++..+ +.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+.+ .++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 5566666666 88999999999999999999999999999999 8899999999988877 46999999999876 557
Q ss_pred CccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.||+|++..++|++++. ..+++++.+.|||||++++.++..+
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 79999999999999654 8899999999999999999877554
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=137.86 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=87.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC------CeEEEEccc------cCCc---c
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ------NVEIIVADI------STFE---M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~------~~~~---~ 127 (291)
++.+|||||||+|..+..++... +.+|+|+|+|+.|++.|++++...+.. ++++.+.|+ .+++ .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 57899999999998766665542 579999999999999999988776542 267888887 2221 2
Q ss_pred CCCccEEEEccccccc---ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 128 EASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.++||+|+|..+++++ .+...+++++.++|||||++++.+++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK 174 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 2789999999999875 46689999999999999999999887543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=135.97 Aligned_cols=118 Identities=17% Similarity=0.311 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...+..+++.+. .++.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.+++++...+++++.++++|+.+....
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 174 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG 174 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhccc
Confidence 345566666665 5678999999999999999998888899999999999999999999998887899999999885434
Q ss_pred CCccEEEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++||+|+++.++... .....+++.+.+.|||||++++..
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 789999998655332 245789999999999999999864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=136.41 Aligned_cols=112 Identities=15% Similarity=0.259 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
......+...+ +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. +++.++.+|+.+++.+
T Consensus 38 ~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~ 108 (263)
T 3pfg_A 38 ADLAALVRRHS--PKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRN-----PDAVLHHGDMRDFSLG 108 (263)
T ss_dssp HHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTCCCS
T ss_pred HHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC-----CCCEEEECChHHCCcc
Confidence 33344443332 45689999999999999999987 679999999999999888764 2789999999998777
Q ss_pred CCccEEEEcc-cccccc---cHHHHHHHHHhccccCeeEEEEeec
Q 022864 129 ASYDRIYSIE-MFEHMK---NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~-~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++||+|++.. +++|+. +...+++++.++|||||++++....
T Consensus 109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8999999998 999994 6678999999999999999997543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=137.55 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=88.3
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH----HHhCCCCeEEEEccccCCccC-CCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC----RVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
+.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.+.+++ ...+++++.++++|+.+++.. +.
T Consensus 21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~- 99 (218)
T 3mq2_A 21 EQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV- 99 (218)
T ss_dssp HHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-
T ss_pred HHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-
Confidence 333466788999999999999999999988999999999999988644333 235566899999999998766 44
Q ss_pred cEEEEcc---cc--cccccHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIE---MF--EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~---~l--~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|.|++.. .. +++++...+++++.++|||||.+++...
T Consensus 100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 7666433 22 2556778999999999999999999554
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-17 Score=135.39 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccEEEEc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYSI 137 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~i~~~ 137 (291)
.++.+|||+|||+|..+..++...++.+|+|+|+|+.+++.++++++..++++++++++|+.+++. .++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 467899999999999999999877789999999999999999999999988789999999988653 3789999997
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
. +.+...+++.+.++|||||.+++.
T Consensus 149 ~----~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 149 A----VARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp C----CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred c----cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 6 367899999999999999999885
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-17 Score=133.54 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc---CCC-ccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM---EAS-YDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~---~~~-~D~i~~ 136 (291)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.++++++..++ ++++++.+|+.+... .++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 57899999999999999877663 46999999999999999999999887 689999999987532 367 999999
Q ss_pred cccccccccHHHHHHHH--HhccccCeeEEEEeeccC
Q 022864 137 IEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~ 171 (291)
+.+++ ..+...+++.+ .++|+|||.+++......
T Consensus 132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 132 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 98864 56778888888 678999999999876554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-16 Score=128.48 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=91.1
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-c-CCCccEEEE
Q 022864 60 RLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-M-EASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~~~D~i~~ 136 (291)
...++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.+++++...++ +++++++|+.... . +++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEE
Confidence 35678999999999 999999999886 78999999999999999999999988 8999999975432 2 278999999
Q ss_pred ccccccccc-------------------HHHHHHHHHhccccCeeEEEEeec
Q 022864 137 IEMFEHMKN-------------------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+.++.+..+ ...+++.+.++|||||++++..+.
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 988765432 478999999999999999997654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-18 Score=145.65 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=92.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++.++++|+.+++..++||+|+++.+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 6889999999999999999987 68999999999999999999999988 58999999999987558999999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEe
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+..+....+..+.++|+|||.+++..
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHH
Confidence 98777667888999999999976643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=139.22 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CCCCeEEEEccccCCc----c---
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------ELQNVEIIVADISTFE----M--- 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~v~~~~~d~~~~~----~--- 127 (291)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.... +..++.++++|+.+.+ .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36789999999999999999874 4789999999999999999988764 3347999999999875 3
Q ss_pred CCCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 128 EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++||+|+|..+++++ ++...+++++.++|||||.+++.+++.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 2589999999999887 446789999999999999999998865
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=140.38 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=86.2
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--------------------------
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL-------------------------- 112 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-------------------------- 112 (291)
+..++.+|||||||+|.++..++.. ++ +|+|+|+|+.|++.++++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4567889999999999888877655 44 799999999999999987654310
Q ss_pred ---CCeE-EEEccccCCcc-----CCCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEee
Q 022864 113 ---QNVE-IIVADISTFEM-----EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ---~~v~-~~~~d~~~~~~-----~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++. ++.+|+.+..+ .++||+|+++.+++++ +++..+++++.++|||||.|++...
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1243 88999988421 2689999999999986 5667899999999999999999865
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=138.11 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=104.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 129 (291)
....+++.++..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++++...+++ +++++.+|+.+.+.+.
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 256 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 256 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC
Confidence 345667777778889999999999999999999998899999999 99999999999888774 5999999999875543
Q ss_pred CccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+|+|++..+++++++ ..++++++.++|||||++++.++..+
T Consensus 257 -~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 257 -ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp -CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred -CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 499999999999976 78899999999999999988876543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=130.96 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
.....+++.+...++.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.+++++...+++++.++.+|+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP 143 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC
Confidence 344566667777889999999999999999999886 448999999999999999999988888789999999865433
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++||+|++..+++++. +.+.+.|||||++++.....
T Consensus 144 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 37899999999999886 37899999999999987654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=130.75 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=90.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++.+|||+|||+|.++..++...|+.+++++|+|+.+++.+++++...+++++.++.+|+.+....++||+|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~---- 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA---- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC----
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec----
Confidence 4789999999999999999998888999999999999999999999888877999999999876457899999864
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.+...+++.+.++|+|||.+++..
T Consensus 141 ~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 141 FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3567899999999999999998864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-17 Score=128.98 Aligned_cols=121 Identities=8% Similarity=0.160 Sum_probs=97.2
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-c-
Q 022864 51 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-E- 126 (291)
Q Consensus 51 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~- 126 (291)
....+++.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++++..++ +++.++.+|+.+. +
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 96 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence 3445555554 567889999999999999999976 457999999999999999999998887 3799999999884 2
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHH--hccccCeeEEEEeeccCCc
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~~ 173 (291)
..++||+|+++.+++ .......++.+. ++|+|||++++........
T Consensus 97 ~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 144 (177)
T 2esr_A 97 LTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTVLL 144 (177)
T ss_dssp BCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred hcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCcccc
Confidence 226799999998763 245567777777 9999999999988765543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=127.74 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=97.3
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-
Q 022864 51 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~- 127 (291)
....+++.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...++ ++++++.+|+.+...
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 109 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ 109 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH
Confidence 3444445443 357889999999999999998874 357999999999999999999998887 479999999987432
Q ss_pred ----CCCccEEEEcccccccccHHHHHHHH--HhccccCeeEEEEeeccCCc
Q 022864 128 ----EASYDRIYSIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 128 ----~~~~D~i~~~~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~~~ 173 (291)
.++||+|+++.+++ .......++.+ .++|+|||++++..+.....
T Consensus 110 ~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 160 (187)
T 2fhp_A 110 FYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTVKL 160 (187)
T ss_dssp HHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred HHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcccc
Confidence 47899999998854 44567777777 88999999999988766543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=140.99 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=96.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC---CeEEEEccccCCccCCC
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ---NVEIIVADISTFEMEAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~ 130 (291)
.+++.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++..++++ ++.++.+|+.+....++
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~ 292 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 292 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTC
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCC
Confidence 345666666778999999999999999999988899999999999999999999998863 58899999998544478
Q ss_pred ccEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|+++.++++.. ....+++.+.++|||||.+++....
T Consensus 293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 99999999997532 2347899999999999999996543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=129.71 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=93.3
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cCCCccEEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~D~i~ 135 (291)
...++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.+++++...++ +++.++++|+.+++ .+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 45678899999999999999999875 467999999999999999999999887 68999999998875 237899999
Q ss_pred Ecccccc---------cccHHHHHHHHHhccccCeeEEEEeec
Q 022864 136 SIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++.++.. ..+...+++.+.++|||||++++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 9876511 124567999999999999999987654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=140.98 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-------HHhCC--CCeEE
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL--QNVEI 117 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~--~~v~~ 117 (291)
.....+..+++.+.+.++.+|||||||+|.+++.++...+..+|+|||+|+.+++.|+++. +..|+ +++.+
T Consensus 157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef 236 (438)
T 3uwp_A 157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 236 (438)
T ss_dssp THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence 3355677788888899999999999999999999998774456999999999999998754 34454 47999
Q ss_pred EEccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 118 IVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 118 ~~~d~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++|+.+.+.. ..||+|+++.++ +.++....|.++.+.|||||+|++.....
T Consensus 237 i~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 237 ERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp EECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred EECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 99999997653 479999998776 45788889999999999999998865443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=133.04 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=91.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccEEEEc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYSI 137 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~i~~~ 137 (291)
.++.+|||||||+|..+..++..+|+.+|+++|+|+.+++.++++++..++++++++++|++++.. .++||+|+|.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 568899999999999999999988899999999999999999999999999789999999998754 2789999997
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+ .+...+++.+.++|||||++++..
T Consensus 159 a~----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 159 AV----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp SS----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Cc----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 53 567889999999999999988754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=138.54 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~ 128 (291)
....+.+.+ ..+|.+|||||||+|..+..+++.. +.+|++||+|+.+++.|++++...+. ++.++.+|+.+.. .+
T Consensus 49 ~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~ 125 (236)
T 3orh_A 49 YMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLP 125 (236)
T ss_dssp HHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSC
T ss_pred HHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhccccc
Confidence 334444433 3578899999999999999998765 46899999999999999998877765 7889999987653 22
Q ss_pred -CCccEEEE-----cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 129 -ASYDRIYS-----IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~i~~-----~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
++||.|+. ...++|..+...+++++.++|||||+|++.
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 78999975 445667788999999999999999999774
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=131.80 Aligned_cols=103 Identities=12% Similarity=0.277 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE-cccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS-IEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~-~~~l 140 (291)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++. +++.++.+|+.+.+.+++||+|+| ..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRLGRKFSAVVSMFSSV 111 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCCSSCEEEEEECTTGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcccCCCCcEEEEcCchH
Confidence 567899999999999999999884 49999999999999888753 368999999998776688999996 4489
Q ss_pred ccc---ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHM---KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+|+ .+...+++++.++|||||.+++..+...
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 988 4567899999999999999999766543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=134.41 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=93.1
Q ss_pred HHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---CCCc
Q 022864 57 ERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EASY 131 (291)
Q Consensus 57 ~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~~~~ 131 (291)
..+... ++.+|||+|||+|.++..++++.+ .+|+|+|+++.+++.+++++..++++ ++.++++|+.+... .++|
T Consensus 42 ~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 42 KFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERA 120 (259)
T ss_dssp HHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCE
T ss_pred HHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCc
Confidence 345566 789999999999999999998853 49999999999999999999998884 69999999998763 3789
Q ss_pred cEEEEccccccc--------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHM--------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|+++.++... .+...+++.+.++|||||++++..+
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 999998876543 2356799999999999999998653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=140.86 Aligned_cols=122 Identities=20% Similarity=0.302 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022864 45 EDAEKAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 122 (291)
+.....+++.+.+.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++..+++ +++++.+|+
T Consensus 213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~ 289 (381)
T 3dmg_A 213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDV 289 (381)
T ss_dssp CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTC-CCEEEECST
T ss_pred CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcch
Confidence 3444455555555442 346789999999999999999987 77999999999999999999998887 599999999
Q ss_pred cCCccC-CCccEEEEcccccc-----cccHHHHHHHHHhccccCeeEEEEeec
Q 022864 123 STFEME-ASYDRIYSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 123 ~~~~~~-~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+...+ ++||+|+++.++++ ..+...+++.+.++|||||.+++....
T Consensus 290 ~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 290 DEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred hhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 997665 79999999999988 466788999999999999999997643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-17 Score=127.14 Aligned_cols=106 Identities=12% Similarity=0.175 Sum_probs=89.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CCCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~i~~~ 137 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++++++|+.+... .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 6789999999999999999987 45699999999999999999998888 89999999987422 1379999999
Q ss_pred ccccccccHHHHHHHHH--hccccCeeEEEEeeccCCc
Q 022864 138 EMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~~ 173 (291)
.+++ .+...+++.+. ++|+|||.+++..+.....
T Consensus 118 ~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~ 153 (171)
T 1ws6_A 118 PPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLYL 153 (171)
T ss_dssp CCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred CCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence 8876 55566777777 9999999999988765443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-16 Score=128.14 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.++++... .+++.++.+|+.+++.+ ++||+|+++.++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 6788999999999999999998742 3899999999999999887653 34799999999987655 789999999988
Q ss_pred cccc---------------cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMK---------------NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+++. +...+++++.++|||||.+++.+++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 6653 668899999999999999999887653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=139.38 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=100.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 131 (291)
..+++.+...++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+ +.+..|
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 249 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTA 249 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCCC
Confidence 3455666667889999999999999999999998899999999 99999999999888874 79999999986 334459
Q ss_pred cEEEEcccccccccH--HHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|++..+++++++. ..+++++.++|||||++++.++
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999766 4899999999999999998776
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=139.37 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC--ccCCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF--EMEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~--~~~~~~D~i~~~~ 138 (291)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+. +.+++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 4568999999999999999999999999999999 9999999999887776 5799999999986 3447899999999
Q ss_pred cccccccH--HHHHHHHHhccccCeeEEEEeeccC
Q 022864 139 MFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 139 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+++++++. ..+++++.+.|||||++++.++..+
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 99988654 5789999999999999999876543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=135.46 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
..++..+++.+.. .++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.+++++...+. +++++++|+.+...
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~ 93 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLI 93 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhh
Confidence 4455666666655 678999999999999999999998888999999999999999999988777 88999999987433
Q ss_pred C-----CCccEEEEcccccccccH--------------------------HHHHHHHHhccccCeeEEEEe
Q 022864 128 E-----ASYDRIYSIEMFEHMKNY--------------------------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-----~~~D~i~~~~~l~~~~~~--------------------------~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. ++||+|+++.++....+. ..+++.+.++|||||++++..
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3 789999998776543221 678889999999999944433
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=148.72 Aligned_cols=120 Identities=23% Similarity=0.231 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHh------CCCCeEEEEcccc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL------ELQNVEIIVADIS 123 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~ 123 (291)
.+..+++.+...++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++... ++++++++++|+.
T Consensus 709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~ 788 (950)
T 3htx_A 709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL 788 (950)
T ss_dssp HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence 34444444444578899999999999999999875 3479999999999999999876542 4567999999999
Q ss_pred CCccC-CCccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeeccC
Q 022864 124 TFEME-ASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 124 ~~~~~-~~~D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+++.. ++||+|++..+++|+++.. .+++++.++|||| .+++.+++..
T Consensus 789 dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~e 838 (950)
T 3htx_A 789 EFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYE 838 (950)
T ss_dssp SCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred hCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence 98776 8999999999999997654 5899999999999 8888887653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=129.49 Aligned_cols=108 Identities=15% Similarity=0.263 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-ccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~-~~~D~i~~~~~l 140 (291)
++.+|||+|||+|.++..++++. ..+|+++|+|+.+++.+++++...++++++++++|+.+. +.. ++||+|+++.++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 57899999999999999887763 359999999999999999999998887899999999874 323 689999999885
Q ss_pred cccccHHHHHHHHHh--ccccCeeEEEEeeccCC
Q 022864 141 EHMKNYQNLLKKISK--WMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~ 172 (291)
+ ......+++.+.+ +|+|||++++.......
T Consensus 133 ~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~ 165 (202)
T 2fpo_A 133 R-RGLLEETINLLEDNGWLADEALIYVESEVENG 165 (202)
T ss_dssp S-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC
T ss_pred C-CCcHHHHHHHHHhcCccCCCcEEEEEECCCcc
Confidence 4 5667788888866 59999999988765443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-16 Score=127.74 Aligned_cols=106 Identities=19% Similarity=0.127 Sum_probs=85.0
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccCCCccEE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D~i 134 (291)
+...++.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.+.+.++.. .++.++.+|+... +..++||+|
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V 130 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLI 130 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEE
Confidence 4567889999999999999999998875579999999999988777766543 3788999998774 233789999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+++.. .-.+...+++++.++|||||.+++...
T Consensus 131 ~~~~~--~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 131 YQDIA--QKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EECCC--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecc--ChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99732 113344568999999999999999754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-17 Score=149.06 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEE
Q 022864 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIV 119 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~ 119 (291)
..+.+...+..+.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ +.+. ..+..
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~ 159 (416)
T 4e2x_A 86 SVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEK 159 (416)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeech
Confidence 3566667777888888888888999999999999999999986 77999999999999887764 3321 11223
Q ss_pred ccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 120 ADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+...++.+ ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus 160 ~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 211 (416)
T 4e2x_A 160 ATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYL 211 (416)
T ss_dssp HHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 444444444 899999999999999999999999999999999999988764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=137.94 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=100.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.++..+ .+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.+++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 233 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN 233 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence 455666666666 8999999999999999999998899999999 9999999998877665 479999999988 44477
Q ss_pred ccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++..+++++++.. .+++++.+.|||||++++.++..
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99999999999886554 89999999999999999987654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=131.41 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=98.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~ 129 (291)
...++..+...++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|+++++..++++ ++++.+|+.+....+
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 446667778889999999999999999999998 678999999999999999999999988854 999999999764447
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|+++ .++...+++++.++|+|||.+++..++.
T Consensus 162 ~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 162 NVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp SEEEEEEC-----SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CcCEEEEC-----CCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 89999984 4566788999999999999999877643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=129.17 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEcc
Q 022864 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVAD 121 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d 121 (291)
.......+..++...+..++.+|||||||+|..+..+++..+ +.+|+++|+|+.+++.++++++..+++ +++++.+|
T Consensus 38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd 117 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR 117 (221)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence 344556677777666655566999999999999999998764 789999999999999999999998885 79999999
Q ss_pred ccCCc--c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 122 ISTFE--M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 122 ~~~~~--~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+.+.. . .++||+|++.... .+...+++.+.+.|||||++++...
T Consensus 118 a~~~l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 118 PLDVMSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HHHHGGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHHHHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 87753 2 3789999987644 4667899999999999999998544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=129.80 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-C
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-E 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~ 128 (291)
..+..+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+ ++.++.+|+.+... .
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccC
Confidence 44566777777888999999999999999999988 5899999999999999999887665 79999999987332 3
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|++..+++++.+ .+.+.|||||++++..+..
T Consensus 133 ~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEECSS
T ss_pred CCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEEcCC
Confidence 78999999999998863 5889999999999987654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=134.81 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=94.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-CCCCeEEEEccccCCccCCC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-ELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~ 130 (291)
..++..+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.+++++... +.+++.++.+|+.+....++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 45666677888999999999999999999987 67889999999999999999999887 77789999999988433378
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++ ++++...+++.+.+.|||||++++.++..
T Consensus 180 fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 180 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred ccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 999998 45667789999999999999999987643
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.5e-16 Score=122.62 Aligned_cols=112 Identities=16% Similarity=0.276 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
.....+++.+...++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.+++++...+++++.++.+|+.+ +.+
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 98 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDK 98 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGG
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccC
Confidence 3445566666777889999999999999999997 588999999999999999999998888789999999988 333
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|+++.+ .+...+++.+.+. |||.+++..+..
T Consensus 99 ~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 99 LEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 78999999988 6778899999988 999999987643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=132.12 Aligned_cols=106 Identities=16% Similarity=0.260 Sum_probs=92.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC------CCccEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME------ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------~~~D~i 134 (291)
..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++. ...++.++++|+.+.+.. ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEE
Confidence 4678899999999999999999985 49999999999999998876 223799999999986533 248999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++..++++++ +...+++++.++|||||++++.++...
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999999997 889999999999999999999887654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=128.13 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=91.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...+++++.++.+|+.+.. +++||+|+++.++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-CCCceEEEECCcH
Confidence 356889999999999999998864 45699999999999999999999888866999999998854 4789999999887
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++ ...+++++.++|+|||++++..+..
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCc
Confidence 65 4788999999999999999976543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=130.85 Aligned_cols=104 Identities=15% Similarity=0.253 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---CCCccEEEEc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EASYDRIYSI 137 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~~~~D~i~~~ 137 (291)
.++.+|||||||+|..+..+++..|+.+|+++|+++.+++.++++++..+++ +++++.+|+.+... .++||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4678999999999999999998767899999999999999999999998884 89999999988644 4789999987
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. ..+...+++.+.+.|||||++++...
T Consensus 150 ~~---~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 AA---KAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp TT---SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred Cc---HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 54 35678899999999999999988544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-17 Score=139.98 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-----------------CC------------
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----------------EL------------ 112 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------------~~------------ 112 (291)
.++.+|||||||+|..+..++.. ++.+|+|+|+|+.|++.++++++.. +.
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 36789999999999965544433 3679999999999999988865321 10
Q ss_pred -CCeEEEEccccC-Ccc-----C-CCccEEEEcccccc----cccHHHHHHHHHhccccCeeEEEEe
Q 022864 113 -QNVEIIVADIST-FEM-----E-ASYDRIYSIEMFEH----MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 -~~v~~~~~d~~~-~~~-----~-~~~D~i~~~~~l~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+.++.+|+.+ .+. + ++||+|+++.++++ ++++..+++++.++|||||+|++..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 015677889987 432 1 56999999999999 6688999999999999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=140.97 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHH-------HHHHHHhC--CCCeEEEEc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI-------EEQCRVLE--LQNVEIIVA 120 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-------~~~~~~~~--~~~v~~~~~ 120 (291)
..+..+++.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.| ++++...| .++++++++
T Consensus 229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 445667777788899999999999999999999876556899999999999998 88888888 468999987
Q ss_pred cccCC--c---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 121 DISTF--E---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 121 d~~~~--~---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|.... + ..++||+|+++.++ +.++....++++.+.|||||.+++..+
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 64421 1 12689999998766 447788899999999999999988643
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=133.64 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=93.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH--CCCCEEEEEcCCHHHHHHHHHHHHHh---CCC-C---------
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVL---ELQ-N--------- 114 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~-~--------- 114 (291)
.++..+++.+...++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|++++... +++ +
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 45556666555456789999999999999999987 56789999999999999999887655 332 1
Q ss_pred ----------------eE-------------EEEccccCCcc-----C-CCccEEEEcccccccc---------cHHHHH
Q 022864 115 ----------------VE-------------IIVADISTFEM-----E-ASYDRIYSIEMFEHMK---------NYQNLL 150 (291)
Q Consensus 115 ----------------v~-------------~~~~d~~~~~~-----~-~~~D~i~~~~~l~~~~---------~~~~~l 150 (291)
++ +.++|+.+... . .+||+|+|+.++.+.. ....++
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l 197 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 197 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence 66 99999988542 3 5899999998776543 356899
Q ss_pred HHHHhccccCeeEEEE
Q 022864 151 KKISKWMKEDTLLFVH 166 (291)
Q Consensus 151 ~~~~~~LkpgG~l~~~ 166 (291)
+++.++|+|||++++.
T Consensus 198 ~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 198 RSLASALPAHAVIAVT 213 (250)
T ss_dssp HHHHHHSCTTCEEEEE
T ss_pred HHHHHhcCCCcEEEEe
Confidence 9999999999999983
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-16 Score=136.04 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
+...++......++.+|||+|||+|.+++.++... |..+++|+|+|+.+++.|+++++..+++++++.++|+.+++.+
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 44556666778889999999999999999999886 6789999999999999999999999987899999999998765
Q ss_pred CCccEEEEccccccc--------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
..||+|+++.++... ..+..+++.+.+.|||||.+++.++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 678999999876542 124779999999999999999987643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=132.89 Aligned_cols=113 Identities=13% Similarity=0.229 Sum_probs=94.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---hCCC-CeEEEEccccCCc------
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LELQ-NVEIIVADISTFE------ 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~-~v~~~~~d~~~~~------ 126 (291)
..+...++.+|||+|||+|.++..++++.|+.+|+|+|+++.+++.+++++.. ++++ ++.++++|+.+..
T Consensus 30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~ 109 (260)
T 2ozv_A 30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA 109 (260)
T ss_dssp HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT
T ss_pred HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh
Confidence 44556678899999999999999999998888999999999999999999987 7774 6999999999872
Q ss_pred -c-CCCccEEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 -M-EASYDRIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 -~-~~~~D~i~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. .++||+|+++.++... .....+++.+.++|||||++++..+.
T Consensus 110 ~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 110 GLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp TCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred ccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 2 3789999999766432 24678999999999999999886553
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=136.82 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=97.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.++++++.+++ ++++++.+|+.+++.+++
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 345556666678899999999999999999876 356999999996 88999999998888 589999999999876688
Q ss_pred ccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|++..+++++ ++....+..+.++|||||.+++...+
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD 157 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 9999999888776 45677888999999999999876544
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=130.52 Aligned_cols=108 Identities=15% Similarity=0.306 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH------hCCCCeEEEEccccC-Cc--cC-CC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV------LELQNVEIIVADIST-FE--ME-AS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~v~~~~~d~~~-~~--~~-~~ 130 (291)
..++.+|||||||+|.++..+++.+|+..|+|+|+|+.+++.|+++++. .+.+++.++++|+.+ ++ .+ ++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3456799999999999999999998889999999999999999988764 355789999999987 44 33 78
Q ss_pred ccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 131 YDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
||.|+++.+-.+... ...+++.+.++|||||.|++.+.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 999998755433321 14799999999999999998764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=130.27 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc--C-----CCcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--E-----ASYD 132 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~~D 132 (291)
.++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.++++++..++. +++++.+|+.+... . ++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3578999999999999999998653 789999999999999999999999884 69999999866321 1 5899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|++....++..+...++..+ ++|||||++++.....
T Consensus 137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 999998887776666778877 9999999999866543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=130.12 Aligned_cols=115 Identities=22% Similarity=0.251 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-CccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~ 128 (291)
.....+++.+...++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.++++....+++++.++.+|+.. ++..
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 3445566666778899999999999999999998864 8999999999999999999998888789999999733 2222
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.+||+|++..+++++.+ .+.+.|||||++++..+...
T Consensus 157 ~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSSS
T ss_pred CCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecCC
Confidence 56999999999988753 67899999999999877543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=134.20 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=92.0
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---------------------
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--------------------- 112 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 112 (291)
.++.. ...++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.++++....+.
T Consensus 48 ~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (265)
T 2i62_A 48 KIFCL-GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKG 125 (265)
T ss_dssp HHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCH
T ss_pred HHhcc-cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccch
Confidence 44433 446778999999999999999887732 4999999999999999887754320
Q ss_pred --------CCe-EEEEccccCCcc--C---CCccEEEEccccc----ccccHHHHHHHHHhccccCeeEEEEee
Q 022864 113 --------QNV-EIIVADISTFEM--E---ASYDRIYSIEMFE----HMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 --------~~v-~~~~~d~~~~~~--~---~~~D~i~~~~~l~----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++ .++.+|+.+..+ + ++||+|++..+++ ++++...+++++.++|||||++++..+
T Consensus 126 ~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 126 PEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 027 899999988643 3 6899999999999 666889999999999999999999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=135.61 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=100.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 131 (291)
..+++.+...++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++++...+++ +++++.+|+.+ +.+..|
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 250 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRKA 250 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSCE
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCCc
Confidence 3456666777889999999999999999999998899999999 99999999999888874 79999999986 233459
Q ss_pred cEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeec
Q 022864 132 DRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+|++..+++++++. ..+++++.++|||||++++.++.
T Consensus 251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999999999999765 58999999999999999998765
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=129.83 Aligned_cols=105 Identities=16% Similarity=0.317 Sum_probs=92.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-c-c--CCCccEEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-E-M--EASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~--~~~~D~i~ 135 (291)
..++.+|||+|||+|..+..+++..|+.+|+++|+++.+++.+++++...++ +++.++.+|+.+. + . .++||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 3467899999999999999999998888999999999999999999998887 4699999999874 2 1 36899999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..+. .+...+++.+.+.|+|||++++.+.
T Consensus 132 ~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 132 IDAAK---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EEGGG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred ECCCH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 98776 3778999999999999999999754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-16 Score=131.04 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=87.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. .+ ++.+|+.+++.+ ++||+|++..++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~ 125 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAVLALGDVL 125 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEEEEcchhh
Confidence 7789999999999999999976 7799999999999999887643 12 889999988765 7899999988766
Q ss_pred cc-ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 142 HM-KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+ ++...+++++.++|||||.+++..++.
T Consensus 126 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 126 SYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 65 789999999999999999999988764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=129.28 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=87.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----CccCCCc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FEMEASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~ 131 (291)
++.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++++.. +++.++.+|+.+ .+...+|
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCE
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccE
Confidence 4555667889999999999999999999875689999999999999999887554 589999999987 5444789
Q ss_pred cEEEEcccccccccH---HHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNY---QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+. ++.+. ..+++++.+.|||||.+++.
T Consensus 145 D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 99993 33343 77899999999999999987
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-16 Score=137.80 Aligned_cols=114 Identities=21% Similarity=0.331 Sum_probs=95.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 131 (291)
..+.......++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.++++++.++++ +++++.+|+.+++.+++|
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 130 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKV 130 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence 344444566788999999999999999999872 3499999999 9999999999998884 599999999998777899
Q ss_pred cEEEEccccccc---ccHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|++..+.+.+ .....+++.+.++|||||++++...
T Consensus 131 D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 131 DVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred eEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 999997655544 5688899999999999999977544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=128.73 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-CCCCeEEEEccccCCccC-C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-ELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~-~ 129 (291)
..++..+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.++++++.. +.+++.+..+|+.+.+.+ +
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 45667778889999999999999999999988 56789999999999999999999887 766899999999987544 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|+++ .++...+++++.++|+|||.+++..+..
T Consensus 166 ~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 166 AYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred CcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 89999984 4566789999999999999999987643
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=137.23 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=97.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
..+++.+...++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++++...++ ++.++.+|+.+.. +++||
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV-KGRFD 263 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC-CSCEE
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc-cCCee
Confidence 344555555567799999999999999999998778999999999999999999988877 5788899988754 47899
Q ss_pred EEEEcccccc-----cccHHHHHHHHHhccccCeeEEEEeec
Q 022864 133 RIYSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~i~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+++.++++ ..+...+++++.++|||||.+++....
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999985 345688999999999999999997654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=122.67 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=97.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~- 128 (291)
....+++.+...++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...++ +++.+..+|+.+....
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence 34455566677889999999999999999999874 8999999999999999999988887 6899999998873222
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+||+|++..+++ +...+++.+.++|+|||.+++..+.
T Consensus 99 ~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 99 PDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp CCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecC
Confidence 6899999998775 4588999999999999999997764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=134.38 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=93.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~ 130 (291)
..+.+.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.++++++.+++ +++.++.+|+.+++.+ ++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 34444455677889999999999999999976 245999999996 99999999998888 6899999999998766 78
Q ss_pred ccEEEEcc---cccccccHHHHHHHHHhccccCeeEE
Q 022864 131 YDRIYSIE---MFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 131 ~D~i~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
||+|++.. .+.+..+...++..+.++|||||.++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 99999977 35555678889999999999999987
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=131.77 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCC-HHHHHHH---HHHHHHhCCCCeEEEEccccCCccC--CCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS-KTQKEFI---EEQCRVLELQNVEIIVADISTFEME--ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s-~~~~~~a---~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~ 135 (291)
.++.+|||||||+|.++..+++..++.+|+|+|+| +.+++.| ++++...+++++.++++|+.+++.. ..+|.|+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 56789999999999999999987788999999999 6666665 7777777777899999999998532 3444454
Q ss_pred Eccccccc-----ccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++.+.... .+...+++++.++|||||.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 44332211 233568999999999999999844
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=122.17 Aligned_cols=102 Identities=18% Similarity=0.343 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc-c
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-E 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~-~ 138 (291)
..++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++. +++.++.+|+.+.+.+ ++||+|+++ .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEEEECCc
Confidence 457889999999999999999987 779999999999999888754 3689999999987655 789999998 6
Q ss_pred ccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++++ ++...+++.+.++|+|||.+++..+.
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 117 VMGFLAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 78887 45688999999999999999997654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=134.87 Aligned_cols=151 Identities=11% Similarity=0.039 Sum_probs=101.3
Q ss_pred cCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022864 15 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 15 yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~ 92 (291)
+.+.......+.+.......+.|.... .........+..++..+.. .++.+|||+|||+|.++..++++.++.+|+|
T Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~p~~-~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~g 94 (254)
T 2h00_A 16 RALTCTLLREDFGLSIDIPLERLIPTV-PLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLA 94 (254)
T ss_dssp HHHHHHHHHHHHCCCCCCCTTSCCCCH-HHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCeeeecCccccCCCc-cchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEE
Confidence 334455666677766655444443110 0112223445555544332 2577999999999999999998776789999
Q ss_pred EcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCC---ccC----CCccEEEEcccccccc-c--------------HHHH
Q 022864 93 ICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF---EME----ASYDRIYSIEMFEHMK-N--------------YQNL 149 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~---~~~----~~~D~i~~~~~l~~~~-~--------------~~~~ 149 (291)
+|+|+.+++.|++++...+++ +++++++|+.+. +.+ ++||+|+++.++++.. + ...+
T Consensus 95 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l 174 (254)
T 2h00_A 95 TEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVN 174 (254)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-----------------------
T ss_pred EECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHH
Confidence 999999999999999988885 599999997652 222 4799999998776543 1 1245
Q ss_pred HHHHHhccccCeeEEEE
Q 022864 150 LKKISKWMKEDTLLFVH 166 (291)
Q Consensus 150 l~~~~~~LkpgG~l~~~ 166 (291)
+..+.++|||||.+.+.
T Consensus 175 ~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 175 TGGITEIMAEGGELEFV 191 (254)
T ss_dssp --CTTTTHHHHTHHHHH
T ss_pred hhhHHHHEecCCEEEEE
Confidence 67788999999987653
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=128.10 Aligned_cols=153 Identities=10% Similarity=0.083 Sum_probs=111.5
Q ss_pred ChHHHHHhhCCCCCccc---------cccCCCCCCHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCc--chHHHHHH-HH
Q 022864 18 PTSFFKLVLGKYFKYSC---------CYFSDASKTLEDAEKAMLELYCERSRL-EDGHTVLDVGCGW--GSLSLYIA-QK 84 (291)
Q Consensus 18 ~~~~~~~~~~~~~~y~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~--G~~~~~la-~~ 84 (291)
+...|..|++..-+|.. ..++. -..+....+..+...++.+.. ....+|||||||+ +..+..++ +.
T Consensus 24 ~aR~yd~~LgGk~n~~~Dr~~~~~~~~~~P~-~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~ 102 (277)
T 3giw_A 24 SARIYDYIIGGKDYYPADKEAGDAMSREWPA-LPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSV 102 (277)
T ss_dssp HHHHHHHHTTCSCCCHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHH
T ss_pred cchhheeecCCccCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHH
Confidence 37889999998877733 11221 112233445556666665542 3457999999997 43445444 45
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------CCCcc-----EEEEccccccccc---HHHH
Q 022864 85 YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------EASYD-----RIYSIEMFEHMKN---YQNL 149 (291)
Q Consensus 85 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~D-----~i~~~~~l~~~~~---~~~~ 149 (291)
.|+++|+++|.|+.|++.+++++...+..++.++++|+.+... .+.|| .|+++.+|||+++ +..+
T Consensus 103 ~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~ 182 (277)
T 3giw_A 103 APESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGI 182 (277)
T ss_dssp CTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHH
T ss_pred CCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHH
Confidence 7899999999999999999988765433479999999988521 13455 6889999999976 5789
Q ss_pred HHHHHhccccCeeEEEEeeccC
Q 022864 150 LKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 150 l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++++.+.|+|||+|+++..+..
T Consensus 183 l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 183 VRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp HHHHHTTSCTTCEEEEEEECCT
T ss_pred HHHHHHhCCCCcEEEEEeccCC
Confidence 9999999999999999887654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=126.35 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=91.4
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CC
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-AS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~-~~ 130 (291)
.+++.+. .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. ..++.+|+.+. +.+ ++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTC
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCc
Confidence 4444444 67889999999999999999987 589999999999988776532 36889998873 333 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
||+|++..+++|+++...+++++.++|+|||.+++..++..
T Consensus 94 fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp EEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred cCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999887653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=127.01 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=89.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~ 131 (291)
+.+.++||.+|||+|||+|.++..++.. .|..+|+|+|+++.|++.+++++++. +|+..+.+|..... .. ..+
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCE
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceE
Confidence 4467899999999999999999999987 47789999999999999998877554 47899999887643 22 789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|++. +.+..+...++.++.+.|||||.+++...
T Consensus 149 DvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 149 DGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp EEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 999875 34446678899999999999999998653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=129.37 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++..++++ +++..+|+.+....++||+|+++...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCcH
Confidence 467889999999999999999876 459999999999999999999988875 99999998874224789999998665
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+ ....+++.+.++|||||+++++.+.
T Consensus 195 ~---~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 195 E---LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp H---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred H---HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 4 3578899999999999999997653
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=126.60 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~ 126 (291)
.+.+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+++.+++.+++++...+++ +++++.+|+.+..
T Consensus 47 ~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 123 (223)
T 3duw_A 47 GKFLQLLVQI---QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL 123 (223)
T ss_dssp HHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHh---hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3444444432 4578999999999999999999876 789999999999999999999988885 5999999997642
Q ss_pred cC------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 ME------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~------~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. ++||+|++.... .....+++.+.+.|+|||++++..+.
T Consensus 124 ~~~~~~~~~~fD~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 124 QQIENEKYEPFDFIFIDADK---QNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp HHHHHTTCCCCSEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred HHHHhcCCCCcCEEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 21 579999988663 46678999999999999998886553
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=128.21 Aligned_cols=106 Identities=11% Similarity=0.185 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc----CCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~----~~~~D~i~ 135 (291)
.++.+|||||||+|..+..+++..| +.+|+++|+|+.+++.+++++...+++ +++++.+|+.+... .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4578999999999999999998876 789999999999999999999998884 79999999977322 14899999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+... ..+...+++.+.++|||||++++.....
T Consensus 142 ~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 142 IDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp ECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred ECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 9764 3567789999999999999999876543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=129.07 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++++.++++++.++.+|+.+.+..++||+|+++.+
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence 35678899999999999999999987677999999999999999999999998889999999998832368999999877
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. +...++..+.+.|+|||+++++....
T Consensus 196 ~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 196 H----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 5 55678899999999999999877654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=134.58 Aligned_cols=105 Identities=28% Similarity=0.374 Sum_probs=90.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
..++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.++++ +++++.+|+.+++.+ ++||+|++..
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 357889999999999999999987 35699999999 5999999999998884 599999999998776 8999999977
Q ss_pred cccc---cccHHHHHHHHHhccccCeeEEEEe
Q 022864 139 MFEH---MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~---~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.+. ......++..+.++|||||+++...
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence 5443 3788999999999999999987533
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=135.66 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=93.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.++..++.+|||||||+|..+..+++.+|+.+++++|+ +.++. +++.+..+. ++++++.+|+.+ +.+ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~ 247 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-H 247 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-C
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC-C
Confidence 44567777788899999999999999999999999999999999 44443 222222333 479999999974 333 8
Q ss_pred ccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
||+|++..++|++++. .+++++++++|||||++++.+...+
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999999999876 6899999999999999999876543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=131.37 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
..++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.++++++.++++ +++++++|+.++...++||+|+++.+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 35688999999999999999998853 27999999999999999999999885 49999999999876688999999765
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. ....+++.+.++|||||++++.+..+
T Consensus 202 ~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 202 V----RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred h----hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 3 33678889999999999999988764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=129.82 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=96.0
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CCCc
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~ 131 (291)
.+...++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.++++++..+++++.++.+|+.++.. .++|
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccC
Confidence 346678999999999999999999987655 7999999999999999999999988889999999988654 4789
Q ss_pred cEEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|+++.+.... .....+++.+.+.|||||++++++.+.
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 999998544321 345789999999999999999987654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-16 Score=129.54 Aligned_cols=119 Identities=12% Similarity=0.138 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccC
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~ 124 (291)
.+...+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+++.+++.++++++..+++ +++++.+|+.+
T Consensus 47 ~~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 123 (242)
T 3r3h_A 47 EQAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123 (242)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 334455555443 3567999999999999999998775 789999999999999999999998884 89999999977
Q ss_pred Ccc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 125 FEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 125 ~~~-------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
... .++||+|++... ..+...+++.+.++|||||++++......
T Consensus 124 ~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 124 TLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp HHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred HHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 432 378999999765 35677899999999999999999766543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=128.11 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-C--CCCeEEEEccccCCc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-E--LQNVEIIVADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~ 126 (291)
....++..+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.+++++... + .+++.++.+|+.+.+
T Consensus 87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 3456677778889999999999999999999985 46789999999999999999999887 5 468999999999876
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+ ++||+|+++ +++...+++.+.++|+|||.+++.+++.
T Consensus 167 ~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp CCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CCCCceeEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 54 789999984 3456688999999999999999988754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=124.39 Aligned_cols=104 Identities=23% Similarity=0.285 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCc---
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFE--- 126 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~--- 126 (291)
...++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.+++++...+ .+++.++.+|+.+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 35678999999999999999999875 34699999999999999999998887 568999999998854
Q ss_pred -cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 -ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 -~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. ++||+|++..+++++ ++.+.+.|||||++++..+.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 33 789999999988765 47788999999999998764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=125.76 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=88.7
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---c-CCC
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---M-EAS 130 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~-~~~ 130 (291)
++.+...++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.+.++++.. +++.++.+|+.+.. . .++
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~ 147 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAM 147 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCC
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCc
Confidence 344566788999999999999999999885 5689999999999998888888765 48999999998842 2 278
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
||+|+++.+ .......++.++.+.|||||.+++...
T Consensus 148 ~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 148 VDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp EEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 999999765 223335568889999999999999654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=139.13 Aligned_cols=114 Identities=22% Similarity=0.249 Sum_probs=95.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
.+.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+++.+++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 344555555567889999999999999999874 467999999998 99999999999888 589999999999766678
Q ss_pred ccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
||+|+++.+++++ ++....+..+.++|||||.+++..
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999998887766 445667788899999999998644
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=125.21 Aligned_cols=106 Identities=19% Similarity=0.384 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--------CCCCeEEEEccccC-Cc--cC-C
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------ELQNVEIIVADIST-FE--ME-A 129 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~v~~~~~d~~~-~~--~~-~ 129 (291)
.++.+|||||||+|.++..+++.+|..+|+|+|+|+.+++.+++++... +++++.++.+|+.+ ++ .+ +
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4678999999999999999999988889999999999999999998876 77789999999987 33 23 7
Q ss_pred CccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|.|++..+-.+.+. ...+++.+.++|+|||.+++.+
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 8999986543322211 1579999999999999999854
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=126.31 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~ 126 (291)
...+..++.. .++.+|||+|||+|..+..+++..| +.+|+++|+++.+++.++++++..+++ +++++.+|+.+..
T Consensus 53 ~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (225)
T 3tr6_A 53 AQLLALLVKL---MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTL 129 (225)
T ss_dssp HHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHh---hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHH
Confidence 3344444432 3577999999999999999998876 789999999999999999999998884 5999999997642
Q ss_pred cC-------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 ME-------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~-------~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. ++||+|++... ..+...+++.+.++|||||++++....
T Consensus 130 ~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 130 AELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp HHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 11 68999997664 356788999999999999999986653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=127.27 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
..++..+...++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.+++++...++ +++.++.+|+.+....++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 45666778888999999999999999999988 5678999999999999999999988887 589999999988633378
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|+++ .++...+++.+.++|+|||.+++..+.
T Consensus 182 ~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 182 VDALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred cCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999984 345678899999999999999997763
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=123.47 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=84.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~ 142 (291)
+.+|||+|||+|.++..+++. +|+|+|+.+++.++++ ++.++.+|+.+++.+ ++||+|++..++++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999887642 9999999999888765 578999999887765 78999999999999
Q ss_pred cccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++...+++++.++|+|||.+++..+..
T Consensus 115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 115 VDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9999999999999999999999988754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=131.00 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~~D~i 134 (291)
.++.+|||+|||+|.++..+++. +++|+++|+|+.+++.++++++.++++ ++.++++|+.++.. .++||+|
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 45789999999999999999986 569999999999999999999999885 49999999988542 3689999
Q ss_pred EEcccc----------cccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMF----------EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++.+. .+..++..+++.+.++|+|||.+++.....
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 997653 223467889999999999999987766543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=129.05 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCcch----HHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHH-----------------------hC
Q 022864 63 DGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRV-----------------------LE 111 (291)
Q Consensus 63 ~~~~vLDiGcG~G~----~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~-----------------------~~ 111 (291)
++.+|||+|||+|. ++..+++..+ +.+|+|+|+|+.+++.|++++-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 46799999999998 6666776643 46999999999999999886410 01
Q ss_pred -------C-CCeEEEEccccCCccC--CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEE
Q 022864 112 -------L-QNVEIIVADISTFEME--ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 112 -------~-~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~ 165 (291)
+ ++|.|.++|+.+.+.+ ++||+|+|.+++.|+++. .++++++.+.|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0 2699999999985433 789999999999999544 7899999999999999988
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=127.76 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 129 (291)
+++.+++.+...++.+|||+|||+|.++..+++. |+.+|+|+|+|+.+++.+++++...+++ ++.++++|+.+.. ++
T Consensus 111 lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-~~ 188 (284)
T 1nv8_A 111 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-KE 188 (284)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-GG
T ss_pred HHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-cc
Confidence 3344444333335679999999999999999998 8999999999999999999999998885 4999999998843 25
Q ss_pred Cc---cEEEEcccccccc-------------------cHHHHHHHHH-hccccCeeEEEEee
Q 022864 130 SY---DRIYSIEMFEHMK-------------------NYQNLLKKIS-KWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~---D~i~~~~~l~~~~-------------------~~~~~l~~~~-~~LkpgG~l~~~~~ 168 (291)
+| |+|+++.++.... +...+++++. +.|+|||++++...
T Consensus 189 ~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 189 KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 78 9999986543211 1126899999 99999999998543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=120.54 Aligned_cols=110 Identities=24% Similarity=0.177 Sum_probs=91.0
Q ss_pred HHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCC
Q 022864 54 LYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTF 125 (291)
Q Consensus 54 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~ 125 (291)
.+++.+. ..++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+ .+++.++.+|+...
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 4444443 5688999999999999999999874 44799999999999999999988765 35799999999865
Q ss_pred ccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 126 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
... ++||+|++..+++++. +.+.+.|||||++++....
T Consensus 146 ~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 146 YAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred cccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 443 7899999998887653 5788999999999997654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=132.41 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=94.1
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.+. ..++.+|||||||+|.++..+++++|..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~- 267 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SVPQ- 267 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCC-
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CCCC-
Confidence 345666665 66788999999999999999999999899999999 888776653 2479999999987 4444
Q ss_pred ccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
||+|++..++|++++.. .++++++++|||||++++.++..+
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 310 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 310 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 99999999999998776 999999999999999999876543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=124.90 Aligned_cols=118 Identities=12% Similarity=0.178 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcC-CHHHHHHHHHHH-----HHhCCC-----CeEE
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN-SKTQKEFIEEQC-----RVLELQ-----NVEI 117 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~-s~~~~~~a~~~~-----~~~~~~-----~v~~ 117 (291)
..+.+.+.......++.+|||+|||+|.++..+++.. ..+|+++|+ |+.+++.+++++ +..++. ++.+
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 4445555554444578899999999999999988762 349999999 899999999998 555543 6888
Q ss_pred EEccccCCc-------cCCCccEEEEcccccccccHHHHHHHHHhccc---c--CeeEEEEe
Q 022864 118 IVADISTFE-------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMK---E--DTLLFVHH 167 (291)
Q Consensus 118 ~~~d~~~~~-------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~l~~~~ 167 (291)
...|+.+.. ..++||+|++..++++.++...+++.+.++|+ | ||.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 877765521 13789999999999999999999999999999 9 99877743
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-15 Score=122.37 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=86.6
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCC
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEAS 130 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 130 (291)
++.+...++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.+++.++++++.. +++.++.+|+.+.. .+++
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCC
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCC
Confidence 334446788999999999999999999874 4579999999999999998887654 58999999998732 2368
Q ss_pred ccEEEEcccccccccH-HHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNY-QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~ 166 (291)
||+|++..+ .++. ..++.++.++|||||.+++.
T Consensus 144 ~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 144 VDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 999998765 2333 34599999999999999987
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-15 Score=128.58 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=94.6
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccE
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDR 133 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~ 133 (291)
...+...++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..+++++.++++|+.+++. .++||+
T Consensus 111 ~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 111 PVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 3445678899999999999999999998863 47999999999999999999999998889999999998754 378999
Q ss_pred EEEcccc------ccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMF------EHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+++.+. ...++ ...+++++.++|||||++++++.+.
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 9996542 21111 2589999999999999999987643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=122.98 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 124 (291)
.+...+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+++.+++.++++++..++ ++++++.+|+.+
T Consensus 66 ~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 142 (247)
T 1sui_A 66 DEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142 (247)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence 334445555443 3567999999999999999999876 78999999999999999999999888 479999999976
Q ss_pred Cc--c------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 125 FE--M------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 125 ~~--~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. . .++||+|++... ..+...+++.+.++|||||++++...
T Consensus 143 ~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 143 VLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp HHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred HHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 42 1 478999999754 35678899999999999999988654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=128.76 Aligned_cols=105 Identities=23% Similarity=0.321 Sum_probs=89.1
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~ 136 (291)
+...++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.++++++.+++ ++++++.+|+.+++.+ ++||+|++
T Consensus 34 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 34 KDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred HhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEE
Confidence 33456789999999999999999876 34599999999 599999999998888 4699999999998766 88999999
Q ss_pred ccccc---ccccHHHHHHHHHhccccCeeEEE
Q 022864 137 IEMFE---HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~---~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
..+.+ +...+..++..+.++|||||.++.
T Consensus 112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 86543 345678899999999999999874
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=131.43 Aligned_cols=103 Identities=31% Similarity=0.395 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccc-
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM- 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~- 139 (291)
.++.+|||||||+|.++..+++.. ..+|++||.|+ +++.|+++++.+++ ++|.++.+|++++..++++|+|+|..+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccc
Confidence 368899999999999998888763 45899999986 88999999999998 579999999999988899999998443
Q ss_pred --ccccccHHHHHHHHHhccccCeeEEEE
Q 022864 140 --FEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 140 --l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+.+-..+..++....++|||||.++-.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 333356788999999999999998653
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=120.79 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=95.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-cCCC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-MEAS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~-~~~~ 130 (291)
..++..+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++....++ +++.+..+|+.+.. ..+.
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 45566677788999999999999999999988 78999999999999999999988887 68999999998865 3478
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|+++ .++...+++.+.++|+|||.+++..+..
T Consensus 159 ~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 159 FHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp BSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred ccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9999984 3456688999999999999999987643
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=128.71 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
..+++..+..+..+|||||||+|.++..+++++|+.+++..|+ |.+++.++++....+.++|+++.+|+.+.+. ..+|
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-~~~D 246 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-PEAD 246 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-CCCS
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-CCce
Confidence 4455666677788999999999999999999999999999998 8899999887765555789999999987544 4579
Q ss_pred EEEEcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|++..++|++++. .++|+++++.|+|||++++.+...
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 99999999999665 578999999999999999987644
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=120.05 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCC-
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF- 125 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~- 125 (291)
...+..++.. .++.+|||+|||+|..+..+++..| +.+|+++|+|+.+++.++++++..++. +++++.+|+.+.
T Consensus 45 ~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 121 (210)
T 3c3p_A 45 GRLLYLLARI---KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIA 121 (210)
T ss_dssp HHHHHHHHHH---HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHh---hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHh
Confidence 3344444432 3567999999999999999998876 789999999999999999999888873 699999999764
Q ss_pred cc-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 126 EM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+. ++ ||+|++... ..+...+++.+.++|||||++++...
T Consensus 122 ~~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 122 AGQRD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp TTCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ccCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 22 26 999998743 35778999999999999999988654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.5e-15 Score=130.31 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=91.6
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p~~ 262 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-GVPKG 262 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-CCCCC
Confidence 344555555 56788999999999999999999999999999999 887766543 2479999999987 44444
Q ss_pred ccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
|+|++..++|++++. .+++++++++|||||++++.+...+
T Consensus 263 -D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 263 -DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp -SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred -CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999999999988654 5799999999999999999877543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-15 Score=121.80 Aligned_cols=112 Identities=18% Similarity=0.118 Sum_probs=91.8
Q ss_pred HHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCC------CCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEE
Q 022864 52 LELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYS------NCKITGICNSKTQKEFIEEQCRVLE-----LQNVEII 118 (291)
Q Consensus 52 ~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~ 118 (291)
...+++.+ ...++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.+++++...+ .+++.++
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 34445555 357789999999999999999998652 2599999999999999999988765 4589999
Q ss_pred EccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 119 VADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 119 ~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+|+.+.... ++||+|++..+++++. +.+.+.|||||++++....
T Consensus 151 ~~d~~~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 151 EGDGRKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred ECCcccCCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 9999873333 7899999999998764 6789999999999997654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-15 Score=116.60 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=88.5
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 126 (291)
+..+++.+. ..++.+|||+|||+|.++..+++.+ ++.+++++|+++ +++. +++.++.+|+.+.+
T Consensus 10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~ 78 (180)
T 1ej0_A 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMK 78 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhh
Confidence 444555544 5678899999999999999999884 568999999999 6432 47999999998875
Q ss_pred -----cC-CCccEEEEcccccccccH-----------HHHHHHHHhccccCeeEEEEeecc
Q 022864 127 -----ME-ASYDRIYSIEMFEHMKNY-----------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 -----~~-~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+ ++||+|+++.++++..+. ..+++.+.++|+|||.+++..+..
T Consensus 79 ~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 79 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 44 789999999988877554 689999999999999999977654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.9e-15 Score=117.78 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. .+++.++++|+.+....++||+|+++.+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES---------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc---------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 45679999999999999999987 4 99999999998876 247899999998843338899999999988
Q ss_pred cccc---------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 142 HMKN---------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..+ ...+++++.+.| |||.+++..+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~ 126 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA 126 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence 6543 356888888888 999999977644
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=128.58 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=92.7
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.+. ..+..+|||||||+|..+..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~ 260 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EVPSG 260 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CCCCC
Confidence 455666665 67789999999999999999999999999999999 887766543 2489999999988 54544
Q ss_pred ccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
|+|++..++|++++ ..++++++++.|||||++++.+...+
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99999999998854 56899999999999999999877543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-15 Score=122.81 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc------------
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM------------ 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------------ 127 (291)
.++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.+++++...+++ ++.++.+|+.+...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4678999999999999999999876 689999999999999999999988884 59999999876321
Q ss_pred -----C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 128 -----E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 -----~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. ++||+|++.... .+...+++.+.+.|+|||++++....
T Consensus 139 ~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 2 679999998554 56678999999999999999986543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=140.24 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c-CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~i~~~~ 138 (291)
..+.+|||||||.|.++..|++. |++|+|||+|+.+++.|+..+.+.+.-++++.+++++++. . +++||+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999987 8999999999999999999998877547999999999873 2 27899999999
Q ss_pred cccccccHHHH--HHHHHhccccCeeEEEEeecc
Q 022864 139 MFEHMKNYQNL--LKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~~~~~~--l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++|+++...+ +..+.+.|+++|..++..+..
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 99999876533 445677788888776655543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-14 Score=117.96 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=82.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDR 133 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~ 133 (291)
+.+.++.+|||+|||+|..+..+++.. |..+|+|+|+|+.+++.+.+.++.. .++.++.+|+..... .++||+
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEE
Confidence 447899999999999999999999863 5679999999999986666555443 489999999986431 268999
Q ss_pred EEEcccccccccHHHHH-HHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHMKNYQNLL-KKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 168 (291)
|+++.+. ++...++ ..+.+.|||||.+++...
T Consensus 150 I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 150 LYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp EEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 9998655 4555544 556669999999998753
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=117.31 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=83.8
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-- 126 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 126 (291)
+..+.+... ..++.+|||+|||+|.++..++++.+ +.+|+|+|+|+.. ..+++.++++|+.+..
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~ 78 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMN 78 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSC
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhh
Confidence 344555544 46788999999999999999999886 6899999999841 2347899999998865
Q ss_pred -----------------------cC-CCccEEEEccccccc----ccH-------HHHHHHHHhccccCeeEEEEeec
Q 022864 127 -----------------------ME-ASYDRIYSIEMFEHM----KNY-------QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 -----------------------~~-~~~D~i~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+ .+||+|+++.++++. .+. ..+++.+.++|||||.+++..+.
T Consensus 79 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 79 NIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp CC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 34 689999998877653 222 24788999999999999987654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=122.88 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..++.+|+|+|+|+.+++.++++. +++.+..+|+.+++.. ++||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence 5678999999999999999998877889999999999998887653 3689999999987765 789999997653
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
..++++.++|||||.+++.+++..
T Consensus 159 -------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 159 -------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp -------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred -------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 247889999999999999988654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=118.61 Aligned_cols=105 Identities=12% Similarity=0.035 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
+++.+|||||||+|.+++.+++..|..+|+++|+++.+++.|+++++.++++ +++++.+|..+...+ .+||+|+..++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 5678999999999999999999877789999999999999999999999995 699999999753333 37999998665
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-. .-...++......|+|+|+++++..
T Consensus 94 Gg--~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 94 GG--RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp CH--HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred Ch--HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 32 2257889999999999999988654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=128.99 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..++.+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p-~~D~v~~~~~l 256 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SIP-NADAVLLKYIL 256 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CCC-CCSEEEEESCG
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CCC-CccEEEeehhh
Confidence 45678999999999999999999999999999999 998876654 2369999999976 333 49999999999
Q ss_pred cccccHH--HHHHHHHhcccc---CeeEEEEeeccC
Q 022864 141 EHMKNYQ--NLLKKISKWMKE---DTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~ 171 (291)
|++++.. .++++++++||| ||++++.++..+
T Consensus 257 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 257 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 9998776 999999999999 999999876543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=120.38 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCC
Q 022864 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF 125 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 125 (291)
+...+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+++.+++.++++++..+++ +++++.+|+.+.
T Consensus 58 ~~~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 134 (237)
T 3c3y_A 58 AGQLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA 134 (237)
T ss_dssp HHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34455555443 3567999999999999999999876 789999999999999999999998884 699999998764
Q ss_pred c--c------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 126 E--M------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~--~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. . .++||+|++.... .+...+++.+.+.|+|||++++...
T Consensus 135 l~~l~~~~~~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 135 LDNLLQGQESEGSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHHHSTTCTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHHhccCCCCCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 2 1 3689999987543 5678899999999999999988654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=121.52 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc-CCcc--CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TFEM--EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~--~~~~D~i~~~~ 138 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ .++++++++|+. .++. .++||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence 56789999999999999999987 78999999999999998876 347999999995 4443 3789999997
Q ss_pred cccccccHHHHHHHHHhccccCeeEE
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.+...+++++.++|||||.++
T Consensus 119 -----~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 -----RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -----SCCSGGGGGHHHHEEEEEEEE
T ss_pred -----CCHHHHHHHHHHHcCCCcEEE
Confidence 356778999999999999998
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=126.37 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=90.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhC-----------CCCeEEEE
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-----------LQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------~~~v~~~~ 119 (291)
...++..+...++.+|||+|||+|.++..+++. .|..+|+++|+++.+++.|++++...+ .++++++.
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 445566667889999999999999999999987 455899999999999999999988643 24799999
Q ss_pred ccccCCc--cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 120 ADISTFE--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~--~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+.+.. .+ ++||+|+++.. ++..+++.+.++|+|||.+++..+.
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9998863 23 67999998543 3344889999999999999987653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=118.06 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=90.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
+++.+|||||||+|.+++.+++..|..+|+++|+++.+++.|+++++.+++. +++++.+|..+...+ .+||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 5678999999999999999998876779999999999999999999999984 699999999986655 47999987665
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. .-...++....+.|+++|.|+++..
T Consensus 100 Gg--~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 100 GG--RLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ch--HHHHHHHHHHHHHhCcCCEEEEECC
Confidence 53 2356788889999999999988764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=120.16 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc----C---CCcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----E---ASYD 132 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----~---~~~D 132 (291)
.++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.++++++..++ ++++++.+|+.+... . ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4578999999999999999998765 68999999999999999999998887 589999999876421 1 5799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+|++... ..+...+++.+.+.|+|||++++...
T Consensus 148 ~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD---KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC---STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9999765 35677899999999999999998654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=120.83 Aligned_cols=115 Identities=12% Similarity=0.175 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 126 (291)
...+..++.. .++.+|||+|||+|..+..+++..| +.+|+++|+++.+++.+++++...++ ++++++.+|+.+..
T Consensus 61 ~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l 137 (232)
T 3cbg_A 61 AQFLGLLISL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL 137 (232)
T ss_dssp HHHHHHHHHH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3444444432 3567999999999999999998775 67999999999999999999998888 46999999986531
Q ss_pred ----c-C--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 ----M-E--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ----~-~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. . ++||+|++.... .++..+++.+.++|+|||++++....
T Consensus 138 ~~l~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 138 EQLTQGKPLPEFDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp HHHHTSSSCCCEEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred HHHHhcCCCCCcCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 1 1 679999987653 56788999999999999999986553
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=124.14 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=87.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCCccEEEEcccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~~l 140 (291)
..+|||||||+|.++..+++.+|+.+|++||+++.+++.+++++.....++++++.+|+.++.. .++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 3599999999999999999988899999999999999999998754333589999999987532 2789999996543
Q ss_pred ccc-c---cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 141 EHM-K---NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~-~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
... + ...++++.++++|+|||++++.....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 321 1 12689999999999999999877643
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=118.57 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
.+++.+|||||||+|.+++.+++..|..+|+++|+++.+++.|+++++.+++. ++++..+|..+...+ .+||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 35678999999999999999998876679999999999999999999999984 699999999886655 3699998765
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+-. .-...++....+.|+++|+|+++..
T Consensus 99 mGg--~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 99 MGG--TLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp ECH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred Cch--HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 543 2356788999999999999998764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=121.82 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=89.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Ccc--CCCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEM--EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~--~~~~D~i~~~ 137 (291)
..++.+|||+| |+|.++..++...+..+|+++|+|+.+++.++++++..|+++++++.+|+.+ ++. .++||+|+++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 34678999999 9999999999886668999999999999999999999888789999999998 553 2689999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeE-EEEe
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLL-FVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l-~~~~ 167 (291)
.++.... ...+++++.++|||||.+ ++..
T Consensus 249 ~p~~~~~-~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 249 PPETLEA-IRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CCSSHHH-HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCCchHH-HHHHHHHHHHHcccCCeEEEEEE
Confidence 8775443 588999999999999954 4444
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=123.70 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---h-CCCCeEEEEccccCCcc---CCCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---L-ELQNVEIIVADISTFEM---EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~-~~~~v~~~~~d~~~~~~---~~~~D~ 133 (291)
..++.+|||||||+|..+..+++..+..+|+++|+|+.+++.+++++.. . ..++++++.+|+.+... .++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 4567899999999999999999765667999999999999999988742 1 12479999999988642 478999
Q ss_pred EEEcccccccccH----HHHHHHHHhccccCeeEEEEeec
Q 022864 134 IYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 i~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+++.+....+.. ..+++.+.++|||||++++...+
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9997766443222 68899999999999999997543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=121.13 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
..+|.+|||+|||+|.+++.+++.. .++|+++|+|+.+++.+++|++.+++ +++.++++|..++.....||.|+++.+
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3678999999999999999999874 57999999999999999999999999 469999999999876688999998865
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.. ...++..+.++|||||++.+.....
T Consensus 202 ~~----~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 202 VR----THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp SS----GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred Cc----HHHHHHHHHHHcCCCCEEEEEeeec
Confidence 43 3456777888999999988766544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=126.62 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=95.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~ 131 (291)
...+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++++..|++++.++.+|+.+.+ .+ ++|
T Consensus 252 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 252 SIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred HHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 34456788999999999999999999998755 799999999999999999999999888999999998875 33 679
Q ss_pred cEEEEccc------ccccccH----------------HHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEM------FEHMKNY----------------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~------l~~~~~~----------------~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|+++.+ +...++. ..+++.+.+.|||||.+++++++.
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99997432 2222222 578999999999999999987754
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-14 Score=125.55 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~~D~i 134 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|+++++.++++ +++++++|+.+... ..+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 567899999999999999999752 348999999999999999999999985 89999999987422 2589999
Q ss_pred EEccccc-----cc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFE-----HM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~-----~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++.+.. .. .++..++..+.+.|+|||.+++++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9977652 22 345668888899999999999877544
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=121.12 Aligned_cols=113 Identities=14% Similarity=0.236 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. ++++++++|+.+.+.
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 456677888888888999999999999999999988 67999999999999999998876655 579999999998755
Q ss_pred CCCccEEEEcccccccccH-HHHHH--------------HH--HhccccCeeEE
Q 022864 128 EASYDRIYSIEMFEHMKNY-QNLLK--------------KI--SKWMKEDTLLF 164 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~-~~~l~--------------~~--~~~LkpgG~l~ 164 (291)
+ .||+|+++.+++..... ..+++ ++ +++|+|||.++
T Consensus 92 ~-~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 92 P-FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp C-CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred h-hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 4 79999998776554221 12221 11 35889999764
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=125.76 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCC------cchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCG------WGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG------~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 123 (291)
.++.++..+. .++.+||||||| +|..+..+++. +|+++|+|+|+|+.|. ...++++++++|+.
T Consensus 205 ~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~ 274 (419)
T 3sso_A 205 HYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQN 274 (419)
T ss_dssp HHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTT
T ss_pred HHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEeccc
Confidence 4445555444 346899999999 77777777765 5889999999999972 12258999999999
Q ss_pred CCccC-------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 124 TFEME-------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 124 ~~~~~-------~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++.. ++||+|++..+ ++..+....|+++.++|||||++++.+..
T Consensus 275 dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 86543 78999999754 66788899999999999999999998765
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=125.61 Aligned_cols=106 Identities=21% Similarity=0.199 Sum_probs=91.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CCCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~i~~~ 137 (291)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++++.++++++.++.+|+.+... ..+||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999987 67999999999999999999999998779999999988643 3689999997
Q ss_pred ccccc---------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 138 EMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 138 ~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+... ..++..++..+.+.|+|||.+++++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 75422 2456789999999999999999987644
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=126.23 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~~~~ 139 (291)
.++.+|||+|||+|.++..+++. ++.|+++|+|+.+++.++++++.++++ ..+.++|+.+... .+.||+|+++.+
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 46899999999999999999986 667999999999999999999999884 4677999987532 245999999876
Q ss_pred ccc---------cccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 140 FEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
... ..++..++..+.++|+|||.+++.+....
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 522 24567899999999999999997776543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=119.62 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
..+..++... ++.+|||||||+|..+..+++. .|+.+|+++|+|+.+++.++ ... ++++++++|+.+.
T Consensus 71 ~~l~~~l~~~---~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~ 142 (236)
T 2bm8_A 71 AVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDL 142 (236)
T ss_dssp HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCS
T ss_pred HHHHHHHHhc---CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhH
Confidence 3444444432 4579999999999999999987 57889999999999988776 112 4899999999884
Q ss_pred ---cc-C-CCccEEEEcccccccccHHHHHHHHHh-ccccCeeEEEEee
Q 022864 126 ---EM-E-ASYDRIYSIEMFEHMKNYQNLLKKISK-WMKEDTLLFVHHF 168 (291)
Q Consensus 126 ---~~-~-~~~D~i~~~~~l~~~~~~~~~l~~~~~-~LkpgG~l~~~~~ 168 (291)
+. . .+||+|++... | .+...++..+.+ .|||||++++.+.
T Consensus 143 ~~l~~~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 143 TTFEHLREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp GGGGGGSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred HHHHhhccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 32 2 37999998765 3 367889999997 9999999999654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=121.40 Aligned_cols=117 Identities=11% Similarity=0.070 Sum_probs=95.3
Q ss_pred HHHHHHc-CCCCCCEEEEEcCCcchHHHHHHHHCCC-----CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 53 ELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYSN-----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 53 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
..++..+ ...++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.++...++ ++.++++|.....
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~ 197 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL 197 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc
Confidence 4444433 3446789999999999999999887533 7899999999999999999988887 7899999988754
Q ss_pred cCCCccEEEEcccccccccH------------------HHHHHHHHhccccCeeEEEEeecc
Q 022864 127 MEASYDRIYSIEMFEHMKNY------------------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~------------------~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
...+||+|+++.++.+++.. ..+++.+.+.|+|||++++..+..
T Consensus 198 ~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 198 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 44789999999997665321 258999999999999999988754
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=117.43 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=90.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.+..+|||||||+|.++..++...|..+|+++|+++.+++.+++++..+|+ +..+...|....+++++||+|+++-+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDRLDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccCCCCCcchHHHHHHHH
Confidence 457799999999999999999877899999999999999999999999988 5899999999887779999999999999
Q ss_pred ccccHH--HHHHHHHhccccCeeEEE
Q 022864 142 HMKNYQ--NLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~--~~l~~~~~~LkpgG~l~~ 165 (291)
++++.. ..+ ++.+.|+|+|+++-
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 996543 355 89999999998754
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=126.73 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=93.7
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~ 133 (291)
..+...++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.++++++..|+. +.++++|+.++. .+++||+
T Consensus 95 ~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~ 173 (464)
T 3m6w_A 95 VLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHR 173 (464)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEE
T ss_pred HhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCE
Confidence 3456778999999999999999999988643 79999999999999999999999997 999999998865 2478999
Q ss_pred EEEccccc------ccc----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFE------HMK----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~------~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+++.+.. .-+ ....+++.+.++|||||+|+.++++.
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 99755431 111 12679999999999999999987754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-14 Score=124.55 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=89.9
Q ss_pred HHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022864 54 LYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 54 ~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 131 (291)
.+++.+ ...+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .|
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~ 252 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP-SA 252 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC-CC
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC-Cc
Confidence 344444 334678999999999999999999999999999999 787765543 2469999999987 444 59
Q ss_pred cEEEEcccccccccHH--HHHHHHHhcccc---CeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMKNYQ--NLLKKISKWMKE---DTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~ 170 (291)
|+|++..++|++++.. .+++++.++||| ||++++.++..
T Consensus 253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 9999999999998766 999999999999 99999977654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=123.92 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-CeEEEEccccCCcc-----CCCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-NVEIIVADISTFEM-----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~-~v~~~~~d~~~~~~-----~~~~D~i 134 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++++.+++ + +++++.+|+.+... ..+||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 467899999999999999999863 45999999999999999999999998 6 89999999988632 3689999
Q ss_pred EEccccc---------ccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++.+.. ...++..++..+.+.|+|||++++++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9987542 22567889999999999999999877543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=119.42 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
..++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+.++++++.+|+.+.+. .
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-P 105 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC-C
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc-c
Confidence 45666777777788899999999999999999976 67999999999999999999887777789999999998765 4
Q ss_pred CccEEEEccccccc
Q 022864 130 SYDRIYSIEMFEHM 143 (291)
Q Consensus 130 ~~D~i~~~~~l~~~ 143 (291)
+||+|+++.+++..
T Consensus 106 ~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 106 KFDVCTANIPYKIS 119 (299)
T ss_dssp CCSEEEEECCGGGH
T ss_pred cCCEEEEcCCcccc
Confidence 89999998877644
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=125.81 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=93.3
Q ss_pred HcCCC--CCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCcc
Q 022864 58 RSRLE--DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYD 132 (291)
Q Consensus 58 ~~~~~--~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D 132 (291)
.+... ++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..|++++.++++|+.+++. +++||
T Consensus 110 ~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD 189 (479)
T 2frx_A 110 ALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189 (479)
T ss_dssp HHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEE
T ss_pred HhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCC
Confidence 34455 889999999999999999998863 47999999999999999999999998889999999988753 37899
Q ss_pred EEEEcccc------ccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMF------EHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|+++.+. ...++ ...+++.+.++|||||+|++++++.
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 99985432 11111 3568999999999999999987754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=122.26 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=90.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~ 130 (291)
..++... ..++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++++...|+ +++++.++|+.+++.+ ++
T Consensus 208 ~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~ 286 (373)
T 3tm4_A 208 NAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDS 286 (373)
T ss_dssp HHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSC
T ss_pred HHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCC
Confidence 3344444 6788999999999999999999885445999999999999999999999998 5899999999998766 78
Q ss_pred ccEEEEccccccc-------cc-HHHHHHHHHhccccCeeEEEEee
Q 022864 131 YDRIYSIEMFEHM-------KN-YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~i~~~~~l~~~-------~~-~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
||+|+++.++... .+ +..+++.+.++| +|.+++.++
T Consensus 287 fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 287 VDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp EEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred cCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 9999999876432 12 367888888888 555555444
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=126.66 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=94.4
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~ 133 (291)
..+...++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..|+.++.++++|+.++. .+++||+
T Consensus 99 ~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~ 178 (456)
T 3m4x_A 99 TAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDR 178 (456)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEE
T ss_pred HHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCE
Confidence 345678899999999999999999998753 4799999999999999999999999988999999998865 2378999
Q ss_pred EEEccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+++.+.... .....+++.+.++|||||+|+.++++.
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 9997652111 112378999999999999999987754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=121.55 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCc--c-CCCcc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE--M-EASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~--~-~~~~D 132 (291)
...++.+|||||||+|..++.+++..+..+|+++|+|+.+++.|++++... ++ ++++++.+|+.+.. . .++||
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 345678999999999999999998766789999999999999999987652 33 47999999988752 1 26899
Q ss_pred EEEEcccc--ccccc--HHHHHHHHHhccccCeeEEEEe
Q 022864 133 RIYSIEMF--EHMKN--YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~i~~~~~l--~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+++... +...+ ...+++.+.++|+|||++++..
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99996542 11122 4789999999999999999864
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=124.84 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-----CCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----~~~~D~i~ 135 (291)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++.++++ +++++.+|+.+... ..+||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 47889999999999999999976 2459999999999999999999999986 89999999987532 36899999
Q ss_pred Ecccccc---------cccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 136 SIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 136 ~~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++.+... ..+...++..+.+.|+|||.+++.+....
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 9875432 25577899999999999999988876543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-14 Score=119.49 Aligned_cols=110 Identities=20% Similarity=0.125 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--CCCccE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDR 133 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~~D~ 133 (291)
...++.+|||||||+|..+..+++..+..+|+++|+++.+++.+++++...+ .++++++.+|+.+... .++||+
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 3456789999999999999999977667899999999999999999875432 2579999999987432 378999
Q ss_pred EEEccccccc--ccH--HHHHHHHHhccccCeeEEEEeec
Q 022864 134 IYSIEMFEHM--KNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 i~~~~~l~~~--~~~--~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|++....... ... ..+++.+.++|+|||++++...+
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 9996543322 222 68999999999999999987543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=119.40 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hCC--CCeEEEEccccCCc-c-CCCccE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LEL--QNVEIIVADISTFE-M-EASYDR 133 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~--~~v~~~~~d~~~~~-~-~~~~D~ 133 (291)
...++.+|||||||+|..++.+++..+..+|+++|+++.+++.+++++.. .++ ++++++.+|+.+.. . .++||+
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred hCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 34567899999999999999999876668999999999999999998765 232 48999999987742 2 378999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEeec
Q 022864 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|++.......+ ....+++.+.++|+|||++++...+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99976543221 2356899999999999999997644
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=107.02 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=84.2
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~ 138 (291)
....++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ +++++++|+.+++ .+||+|+++.
T Consensus 45 ~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~D~v~~~~ 120 (207)
T 1wy7_A 45 LGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN--SRVDIVIMNP 120 (207)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--CCCSEEEECC
T ss_pred cCCCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC--CCCCEEEEcC
Confidence 345578899999999999999999763 35899999999999999999988887 8999999999864 5899999999
Q ss_pred cccccc--cHHHHHHHHHhccccCeeEEE
Q 022864 139 MFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~~--~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+++... ....+++.+.+.+ |+.+++
T Consensus 121 p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 121 PFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp CCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred CCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 987763 3457888888888 555444
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=120.79 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hC---CCCeEEEEccccCCc-c-CCCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LE---LQNVEIIVADISTFE-M-EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~---~~~v~~~~~d~~~~~-~-~~~~D~i 134 (291)
.++.+|||||||+|..+..+++..+..+|+++|+++.+++.+++++.. .+ .++++++.+|+.+.. . .++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 456899999999999999999876678999999999999999998764 22 358999999998742 2 3789999
Q ss_pred EEcccccc---c--cc--HHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEH---M--KN--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~---~--~~--~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++....+. . .. ...+++.+.++|||||++++....
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99876644 1 11 378999999999999999987543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=123.25 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCc
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASY 131 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~ 131 (291)
+...+...++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++...++ ++.++.+|+.+.+ .+ ++|
T Consensus 238 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 238 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCE
T ss_pred HHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCC
Confidence 3344567889999999999999999999987668999999999999999999998888 6899999998875 33 689
Q ss_pred cEEEEcccc------ccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMF------EHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|+++.+. .+.++ ...+++.+.+.|||||++++++++.
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 999985432 22222 1578999999999999999988654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-14 Score=115.14 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
..++.+|||+|||+|.++..+ ..+|+|+|+|+. ++.++.+|+.+.+.+ ++||+|++..+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSI-----RNPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLS 124 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehh
Confidence 356789999999999998876 358999999987 456889999987665 78999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++ .+...+++++.++|+|||.+++.++.
T Consensus 125 l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 125 LMG-TNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CCS-SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred ccc-cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 974 88999999999999999999997654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-14 Score=120.46 Aligned_cols=108 Identities=15% Similarity=0.045 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hCC--CCeEEEEccccCCc-c-CCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LEL--QNVEIIVADISTFE-M-EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~--~~v~~~~~d~~~~~-~-~~~~D~i~ 135 (291)
..+.+|||||||+|..+..+++..+..+|+++|+|+.+++.+++++.. .++ ++++++.+|+.+.. . .++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 456899999999999999999875678999999999999999998754 222 58999999987742 2 37899999
Q ss_pred Ecccccccc-----cHHHHHHHHHhccccCeeEEEEeec
Q 022864 136 SIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++....+.. ....+++.+.++|||||++++...+
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 865432121 2368999999999999999997543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=109.54 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++. +++++++|+.+++ ++||+|+++.+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~--~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS--GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC--CCeeEEEECCC
Confidence 4557889999999999999999976 34589999999999999988754 6899999999865 78999999999
Q ss_pred cccccc--HHHHHHHHHhcc
Q 022864 140 FEHMKN--YQNLLKKISKWM 157 (291)
Q Consensus 140 l~~~~~--~~~~l~~~~~~L 157 (291)
+++..+ ...+++.+.+.+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp C-------CHHHHHHHHHHE
T ss_pred chhccCchhHHHHHHHHHhc
Confidence 988853 346888888887
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=110.02 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=82.2
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022864 51 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 51 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 127 (291)
++.++.++.. ..++.+|||+|||+|.++..++++ +.+|+|+|+++.. ..+++.++++|+.+...
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~ 78 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFD 78 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHH
Confidence 4555655554 467899999999999999999987 7899999999852 23579999999988541
Q ss_pred ------C----CCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 128 ------E----ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ------~----~~~D~i~~~~~l~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. ++||+|+|+...... .....+++.+.++|||||.+++..+..
T Consensus 79 ~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 79 DIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp HHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 1 389999997643221 123567888999999999999877644
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=118.54 Aligned_cols=107 Identities=22% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCc-c-CCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE-M-EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~-~-~~~~D~i~ 135 (291)
..+.+|||||||+|..++.+++..+..+|++||+++.+++.+++++... ++ ++++++.+|+.+.. . .++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4578999999999999999997655689999999999999999987542 23 58999999988742 2 37899999
Q ss_pred Ecccccccc----cHHHHHHHHHhccccCeeEEEEee
Q 022864 136 SIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+.......+ ....+++.+.++|+|||++++...
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 976543221 136799999999999999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=108.39 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCC---------CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE-EccccCCc----
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN---------CKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFE---- 126 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~---------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~---- 126 (291)
..++.+|||+|||+|.++..+++..+. .+|+|+|+|+.. ..+++.++ .+|+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 467899999999999999999998644 799999999842 23478899 89987643
Q ss_pred ----cC-CCccEEEEccccccc----ccH-------HHHHHHHHhccccCeeEEEEeecc
Q 022864 127 ----ME-ASYDRIYSIEMFEHM----KNY-------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ----~~-~~~D~i~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+ ++||+|+++.+++.. .+. ..+++.+.++|||||.+++.++..
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 12 589999997655432 222 478999999999999999976643
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=119.08 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
....+++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.++++++.++.+|+.+..
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence 44566777777777778889999999999999999987 7899999999999999999999999888999999998832
Q ss_pred ----cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 ----ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ----~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. ++||+|+++.+..... .+++.+.+ ++|+++++++.
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~~---~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGAA---GVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCCH---HHHHHHHH-HCCSEEEEEES
T ss_pred hhhhhhcCCCCEEEECCCCccHH---HHHHHHHh-cCCCeEEEEEC
Confidence 22 6899999988775443 45555554 78999888753
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=131.25 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc-c-CCCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE-M-EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~-~-~~~~D~i~~~~ 138 (291)
++.+|||+|||+|.++..++... ..+|++||+|+.+++.++++++.++++ +++++++|+.++. . .++||+|+++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 58899999999999999998752 347999999999999999999999985 7999999998843 2 27899999987
Q ss_pred cc-----------cccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MF-----------EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+. ....++..++..+.++|+|||+|++++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 53 33356788999999999999999987654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-14 Score=121.30 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hCC--CCeEEEEccccCCc--cCCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LEL--QNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~--~~v~~~~~d~~~~~--~~~~~D~i~ 135 (291)
.++.+|||||||+|..+..+++..+..+|+++|+|+.+++.+++++.. .++ ++++++.+|+.+.. .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 456899999999999999999766678999999999999999998765 222 47999999987742 237899999
Q ss_pred Ecccccc--cccH--HHHHHHHHhccccCeeEEEEeec
Q 022864 136 SIEMFEH--MKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~--~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++..-.. .... ..+++.+.+.|+|||++++...+
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9753211 1121 78999999999999999997643
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=124.00 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-------------CCCEEEEEcCCHHHHHHHHHHHHHhCCC--C
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-------------SNCKITGICNSKTQKEFIEEQCRVLELQ--N 114 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~ 114 (291)
...+.+++.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|+.++...|+. +
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 344555666666778899999999999999888652 2468999999999999999999888874 6
Q ss_pred eEEEEccccCCccCCCccEEEEccccccccc-----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 115 VEIIVADISTFEMEASYDRIYSIEMFEHMKN-----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 115 v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+.+.++|....+...+||+|+++.++..... ...+++.+.+.|||||++.+..+..
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~ 310 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 310 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence 8899999988765578999999998876421 1368999999999999999888753
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=117.79 Aligned_cols=109 Identities=17% Similarity=0.342 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
..++..+++ ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.++++ +.++.+|+.++..
T Consensus 279 e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~- 351 (425)
T 2jjq_A 279 VNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV- 351 (425)
T ss_dssp HHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-
T ss_pred HHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-
Confidence 344455544 456789999999999999999976 679999999999999999999999886 9999999998754
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+||+|+++.+..... ..+++.+. .|+|+|+++++.
T Consensus 352 ~~fD~Vv~dPPr~g~~--~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 352 KGFDTVIVDPPRAGLH--PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TTCSEEEECCCTTCSC--HHHHHHHH-HHCCSEEEEEES
T ss_pred cCCCEEEEcCCccchH--HHHHHHHH-hcCCCcEEEEEC
Confidence 3899999987754332 34555554 489999998864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=116.99 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-----------CCCCeEEEEccccCCcc-CC
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----------ELQNVEIIVADISTFEM-EA 129 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~v~~~~~d~~~~~~-~~ 129 (291)
.++.+|||||||+|..+..+++. +..+|++||+++.+++.+++++ .. ..++++++.+|+.+... .+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccC
Confidence 45689999999999999999987 6789999999999999999987 32 22579999999876422 47
Q ss_pred CccEEEEccccccc--cc--HHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEHM--KN--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~~--~~--~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+||+|++....+.. .. ...+++.+.++|+|||++++....
T Consensus 152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 89999997654221 11 267899999999999999997543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-13 Score=117.95 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------------CEEE
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKIT 91 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------------~~v~ 91 (291)
.+...++...+..++.+|||++||+|.+++.++....+ .+|+
T Consensus 182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 34556667777888999999999999999999876311 5799
Q ss_pred EEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc----ccHHHHHHHHHhcccc--CeeEE
Q 022864 92 GICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLLF 164 (291)
Q Consensus 92 ~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~Lkp--gG~l~ 164 (291)
|+|+++.+++.|++++..++++ ++++.++|+.+++.+.+||+|+++.++..- .+...+.+.+.+.||+ |+.++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9999999999999999999984 799999999998766889999999987532 3455667777777766 88888
Q ss_pred EEeecc
Q 022864 165 VHHFCH 170 (291)
Q Consensus 165 ~~~~~~ 170 (291)
+.+...
T Consensus 342 iit~~~ 347 (385)
T 3ldu_A 342 LITSYE 347 (385)
T ss_dssp EEESCT
T ss_pred EEECCH
Confidence 766543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=117.33 Aligned_cols=122 Identities=14% Similarity=0.148 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------------CEE
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKI 90 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------------~~v 90 (291)
+.+...++...+..++.+|||++||+|.+++.++....+ .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 345566777778888999999999999999998875322 469
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc----ccHHHHHHHHHhcccc--CeeE
Q 022864 91 TGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLL 163 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~Lkp--gG~l 163 (291)
+|+|+|+.+++.|++++...|++ +++++++|+.+++.+.+||+|+++.++..- .+...+.+.+.+.||+ ||.+
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 346 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSV 346 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEE
Confidence 99999999999999999999985 599999999998766889999999887432 2345566666666665 8888
Q ss_pred EEEeecc
Q 022864 164 FVHHFCH 170 (291)
Q Consensus 164 ~~~~~~~ 170 (291)
++.+...
T Consensus 347 ~iit~~~ 353 (393)
T 3k0b_A 347 YVLTSYE 353 (393)
T ss_dssp EEEECCT
T ss_pred EEEECCH
Confidence 8876543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-14 Score=120.88 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCc--cCCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~--~~~~~D~i~ 135 (291)
.++.+|||||||+|..++.+++..+..+|+++|+|+.+++.|++++... ++ ++++++.+|+.+.. ..++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999998766789999999999999999987543 22 47999999998742 237899999
Q ss_pred Ecccccccc--cH--HHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMK--NY--QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~--~~--~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++...+..+ .. ..+++.+.++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 976432111 11 688999999999999999875
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-13 Score=118.31 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++.. ++ .+.+|+++|+|+.+++.++++++.+++ +++.++++|+.+.. .+||+|+++.+.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcH
Confidence 4688999999999999999 76 378999999999999999999999998 57999999999876 789999997654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.. ..+++.+.+.|+|||.+++.++...
T Consensus 269 ~~----~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 269 FA----HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp TG----GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred hH----HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 32 3788889999999999999877554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-14 Score=120.19 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-HhCC-CCeEEE--EccccCCc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEII--VADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~-~~v~~~--~~d~~~~~ 126 (291)
++..+.+.....++.+|||+|||+|.++..++++ .+|+|||+++ ++..++++.. .... .++.++ ++|+.+++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred HHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence 4556666655578899999999999999999976 5899999998 5322211100 0001 168899 99999876
Q ss_pred cCCCccEEEEccccccccc----HH---HHHHHHHhccccCe--eEEEEeec
Q 022864 127 MEASYDRIYSIEMFEHMKN----YQ---NLLKKISKWMKEDT--LLFVHHFC 169 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~----~~---~~l~~~~~~LkpgG--~l~~~~~~ 169 (291)
+++||+|+|..+ ++..+ .. .+++.+.++||||| .+++.++.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999877 43322 11 37899999999999 99887765
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-13 Score=109.67 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.++.+|||||||+|.++..+. ++.+|+|+|+|+.+++.+++++...+. +..+..+|....++++++|+|++.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 567899999999999999877 589999999999999999999888875 7899999999988778999999999998
Q ss_pred ccccHH-HHHHHHHhccccCeeEEE
Q 022864 142 HMKNYQ-NLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~-~~l~~~~~~LkpgG~l~~ 165 (291)
++++.. ...-++.+.|+++|+++-
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEEEE
Confidence 885432 233388889999987544
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=117.65 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEEccccCCcc-
Q 022864 51 MLELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~~- 127 (291)
++..+++.+... ++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.++ . +++. +...|+..+..
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchh
Confidence 466667776654 6789999999999999999876 246999999999999875432 1 2333 22345544332
Q ss_pred --C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 --E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 --~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+ .+||+|++..+++++ ..++..+.++|||||.+++.
T Consensus 146 ~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEE
Confidence 2 349999998888755 77899999999999999885
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=115.49 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------------CEEE
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKIT 91 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------------~~v~ 91 (291)
.+...++...+..++..|||.+||+|.+++.++....+ .+|+
T Consensus 181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 34556677778888999999999999999998865322 4699
Q ss_pred EEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc----ccHHHHHHHHHhcccc--CeeEE
Q 022864 92 GICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLLF 164 (291)
Q Consensus 92 ~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~Lkp--gG~l~ 164 (291)
|+|+|+.+++.|++|+...|+. ++++.++|+.+++.+.+||+|+++.++..- .+...+.+.+.+.||+ ||.++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9999999999999999999985 599999999998766789999999987532 3456677777777766 89888
Q ss_pred EEeecc
Q 022864 165 VHHFCH 170 (291)
Q Consensus 165 ~~~~~~ 170 (291)
+.+...
T Consensus 341 iit~~~ 346 (384)
T 3ldg_A 341 ILTNDT 346 (384)
T ss_dssp EEESCT
T ss_pred EEECCH
Confidence 876643
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-14 Score=119.07 Aligned_cols=109 Identities=24% Similarity=0.316 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC------CeEEE--Eccc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ------NVEII--VADI 122 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~--~~d~ 122 (291)
++..+.++....++.+|||||||+|.++..+++. .+|+|||+++ ++..+++ .... ++.++ ++|+
T Consensus 62 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~----~~~~~~~~~~~v~~~~~~~D~ 133 (265)
T 2oxt_A 62 KLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHE----VPRITESYGWNIVKFKSRVDI 133 (265)
T ss_dssp HHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCC----CCCCCCBTTGGGEEEECSCCT
T ss_pred HHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhh----hhhhhhccCCCeEEEecccCH
Confidence 3555666655678899999999999999999875 5899999998 4322211 1111 68899 9999
Q ss_pred cCCccCCCccEEEEcccccccccH----H---HHHHHHHhccccCe--eEEEEeec
Q 022864 123 STFEMEASYDRIYSIEMFEHMKNY----Q---NLLKKISKWMKEDT--LLFVHHFC 169 (291)
Q Consensus 123 ~~~~~~~~~D~i~~~~~l~~~~~~----~---~~l~~~~~~LkpgG--~l~~~~~~ 169 (291)
.+++ +++||+|+|..+ ++..+. . .+++.+.++||||| .+++..+.
T Consensus 134 ~~l~-~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 134 HTLP-VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp TTSC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred hHCC-CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9876 578999999876 443221 1 37899999999999 99987765
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=113.28 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=82.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH----hCCCCeEEEEccccCCccCCCccEEEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV----LELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~~~~~~D~i~~ 136 (291)
...+.+|||||||+|..+..+++. + .+|+++|+++.+++.|++++.. ...++++++.+|..+.. ++||+|++
T Consensus 70 ~~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~ 145 (262)
T 2cmg_A 70 KKELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFC 145 (262)
T ss_dssp SSCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEE
Confidence 345689999999999999999977 6 8999999999999999876532 11247999999998875 78999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. .++..+++.+.+.|+|||++++...
T Consensus 146 d~-----~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 146 LQ-----EPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp SS-----CCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CC-----CChHHHHHHHHHhcCCCcEEEEEcC
Confidence 73 3445689999999999999998654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-14 Score=120.00 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
..++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++. ..++++++++|+.+++.+
T Consensus 16 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCccc
Confidence 34566777788888999999999999999999988 5899999999999988877654 234799999999997654
Q ss_pred -CCccEEEEcccccccc-----------cHHHHH----HHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFEHMK-----------NYQNLL----KKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~-----------~~~~~l----~~~~~~LkpgG~l~~~~~ 168 (291)
++| .|+++.++.... ....++ +.+.++|+|||.+.+...
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 568 778876543321 112233 668899999999877543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=109.40 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=78.5
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---C-CCccE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~~D~ 133 (291)
.++..++.+|||+|||. +++|+|+.|++.++++... ++.++++|+.+++. + ++||+
T Consensus 7 ~~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred ccCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeE
Confidence 34678899999999995 2399999999999876532 58999999998876 4 78999
Q ss_pred EEEccccccc-ccHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHM-KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|++..+++|+ ++...+++++.++|||||++++..+
T Consensus 67 V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 67 ILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 9999999999 8999999999999999999999544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=118.58 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
....+.+++.+...++.+|||+|||+|.++..++++. +..+++|+|+++.+++.| .++.++++|+.+...
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~ 95 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEP 95 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCC
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCc
Confidence 3445566666665567799999999999999999875 568999999999987665 378999999998765
Q ss_pred CCCccEEEEccccccccc-----------------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 128 EASYDRIYSIEMFEHMKN-----------------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++||+|+++.++..... ...+++.+.++|+|||.+++..+..
T Consensus 96 ~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 578999999877643311 1256889999999999999988764
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-13 Score=118.70 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=80.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcC----CHHHHHHHHHHHHHhCCCCeEEEEc-cccCCc
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN----SKTQKEFIEEQCRVLELQNVEIIVA-DISTFE 126 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~----s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~ 126 (291)
+..+.++....++.+|||+|||+|.++..++++ .+|+|+|+ ++.+++.+. ....+.+++.++++ |+..++
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~ 145 (305)
T 2p41_A 71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP 145 (305)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC
Confidence 444555534567899999999999999999976 47999999 554432111 11112246899999 888764
Q ss_pred cCCCccEEEEccccc---ccccHH---HHHHHHHhccccCeeEEEEeecc
Q 022864 127 MEASYDRIYSIEMFE---HMKNYQ---NLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~---~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++||+|+|..++. +..+.. .++..+.++|||||.+++..+..
T Consensus 146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 36899999987653 222222 47888999999999999876654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-12 Score=107.02 Aligned_cols=90 Identities=20% Similarity=0.318 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+++.+
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--YNNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--CSSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--CCCeEEEECchhhCCcc
Confidence 456677888888889999999999999999999988 78999999999999999998873 35899999999997766
Q ss_pred -CCccEEEEcccccc
Q 022864 129 -ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 -~~~D~i~~~~~l~~ 142 (291)
.+||+|+++.+++.
T Consensus 112 ~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 112 KLDFNKVVANLPYQI 126 (295)
T ss_dssp GSCCSEEEEECCGGG
T ss_pred cCCccEEEEeCcccc
Confidence 67999999977653
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=115.45 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
...++..+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++++++++.+|+.+...
T Consensus 199 ~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 199 NIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 355667777766544 578999999999999999875 67999999999999999999999998889999999987531
Q ss_pred --C---------------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 128 --E---------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 --~---------------~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
. .+||+|+++.+...+ ...+.+.|+++|.++..+.++.
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~~l~~~g~ivyvsc~p~ 330 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL------DSETEKMVQAYPRILYISCNPE 330 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC------CHHHHHHHTTSSEEEEEESCHH
T ss_pred HHhhccccccccccccccCCCCEEEECcCcccc------HHHHHHHHhCCCEEEEEECCHH
Confidence 1 279999998765422 3345556678888877776543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-12 Score=107.85 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=75.1
Q ss_pred cCCCCCCEEEEEcC------CcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE-EEccccCCccCCC
Q 022864 59 SRLEDGHTVLDVGC------GWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEI-IVADISTFEMEAS 130 (291)
Q Consensus 59 ~~~~~~~~vLDiGc------G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~-~~~d~~~~~~~~~ 130 (291)
+...++.+|||+|| |+|. ..+++..+ +.+|+|+|+|+. ++++++ +++|+.+.+..++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~~~ 123 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTANK 123 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCSSC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCccCc
Confidence 45678999999999 4476 55566665 589999999997 136788 9999998766678
Q ss_pred ccEEEEcccccc-----------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|+|+...+. ......+++.+.++|||||.+++..+..
T Consensus 124 fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 124 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999999754221 1224579999999999999999976543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-13 Score=112.35 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE-EccccCCc--
Q 022864 51 MLELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFE-- 126 (291)
Q Consensus 51 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~-- 126 (291)
++..+++.+... ++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++.. ++... ..++....
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~-----~~~~~~~~~~~~~~~~ 97 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDE-----RVVVMEQFNFRNAVLA 97 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCT-----TEEEECSCCGGGCCGG
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCc-----cccccccceEEEeCHh
Confidence 455666666554 56799999999999999999872 3599999999999988765422 22211 11222111
Q ss_pred -cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 -ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+ ..+|.+.+..++..+ ..+++++.++|||||.+++..
T Consensus 98 ~~~~~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 98 DFEQGRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp GCCSCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred HcCcCCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE
Confidence 11 135666666665544 678999999999999998843
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=105.49 Aligned_cols=113 Identities=12% Similarity=-0.037 Sum_probs=89.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~ 131 (291)
..+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..|++++.++.+|+.++... .+|
T Consensus 96 ~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~f 175 (309)
T 2b9e_A 96 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV 175 (309)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred HHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCC
Confidence 34567889999999999999999999864 4579999999999999999999999988899999999886532 479
Q ss_pred cEEEEccccccc-----------------cc-------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHM-----------------KN-------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~-----------------~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|.|++..+.... .+ ..++++.+.++|+ ||+|+.++.+.
T Consensus 176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 999985432110 01 1346777888887 99988877654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-12 Score=111.29 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---------------CCCCeEEEEccccCCcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---------------ELQNVEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~v~~~~~d~~~~~~ 127 (291)
++.+|||+|||+|..++.++++.++.+|+++|+++.+++.+++|++.+ +++++.++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 578999999999999999999876779999999999999999999998 77569999999987642
Q ss_pred --CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 --EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 --~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++||+|++.. .. ....+++.+.+.|||||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~~---~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG---SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC---CHHHHHHHHHHhcCCCCEEEEEe
Confidence 25799999764 22 23678899999999999887754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-12 Score=112.42 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCcc---CCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEM---EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~---~~~~D~i~ 135 (291)
.++.+|||++||+|.+++.++++.++ .+|+++|+++.+++.+++|++.+++++ +.++.+|+.++.. .++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999987545 689999999999999999999999854 9999999977543 36799999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++. . .....+++.+.+.|+|||+++++.
T Consensus 131 lDP-~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 987 2 223568889999999999887765
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=102.86 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++.. .++++++++|+.+++.+
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCcc
Confidence 456677788788888999999999999999999988 58999999999999999887653 24899999999997655
Q ss_pred --CCccEEEEccccc
Q 022864 129 --ASYDRIYSIEMFE 141 (291)
Q Consensus 129 --~~~D~i~~~~~l~ 141 (291)
..| .|+++.+++
T Consensus 92 ~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 92 KNQSY-KIFGNIPYN 105 (244)
T ss_dssp SSCCC-EEEEECCGG
T ss_pred cCCCe-EEEEeCCcc
Confidence 344 577776654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-11 Score=102.62 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++ +|||||||+|.++..+++. +.+|+++|+|+.+++.+++++.. .+++++++|+.+++.+
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChh
Confidence 4566778888888888 9999999999999999987 67999999999999999887652 4899999999998765
Q ss_pred --CCccEEEEccccccc
Q 022864 129 --ASYDRIYSIEMFEHM 143 (291)
Q Consensus 129 --~~~D~i~~~~~l~~~ 143 (291)
..+|.|+++.+++.-
T Consensus 107 ~~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 107 EVPQGSLLVANLPYHIA 123 (271)
T ss_dssp GSCTTEEEEEEECSSCC
T ss_pred hccCccEEEecCccccc
Confidence 478999999877543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=115.71 Aligned_cols=148 Identities=7% Similarity=0.022 Sum_probs=96.5
Q ss_pred cCCChHHHHHhhCCCCC---ccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-----
Q 022864 15 YELPTSFFKLVLGKYFK---YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS----- 86 (291)
Q Consensus 15 yd~~~~~~~~~~~~~~~---y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~----- 86 (291)
.|.-.+.|+.++..... -..|.|-.+ ......+++.+...++.+|||.+||+|.++..+++...
T Consensus 126 ~d~lG~~YE~ll~~~a~~~~~~~G~fyTP--------~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~ 197 (541)
T 2ar0_A 126 RDDFGDMYEGLLQKNANETKSGAGQYFTP--------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 197 (541)
T ss_dssp ------------------------CCCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTT
T ss_pred hhHHHHHHHHHHHHHHHhccccCCeeeCC--------HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcc
Confidence 35556777777764321 111333322 22334455556667788999999999999988876421
Q ss_pred -------------CCEEEEEcCCHHHHHHHHHHHHHhCCCC-----eEEEEccccCCcc--CCCccEEEEccccccccc-
Q 022864 87 -------------NCKITGICNSKTQKEFIEEQCRVLELQN-----VEIIVADISTFEM--EASYDRIYSIEMFEHMKN- 145 (291)
Q Consensus 87 -------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~-----v~~~~~d~~~~~~--~~~~D~i~~~~~l~~~~~- 145 (291)
..+++|+|+++.+++.|+.++...+++. +.+.++|....+. ..+||+|+++.++.....
T Consensus 198 ~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~ 277 (541)
T 2ar0_A 198 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT 277 (541)
T ss_dssp TTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSC
T ss_pred cccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccch
Confidence 2479999999999999999988877754 7889999876532 268999999998865422
Q ss_pred -------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 146 -------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 146 -------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
...++..+.+.|||||++.+..+..
T Consensus 278 ~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 278 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp CCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred hhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 2368999999999999998887654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=105.75 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 127 (291)
+++.+++.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|++++...+ +++.++++|+.+++.
T Consensus 14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLK 92 (301)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHH
Confidence 3556667777788999999999999999999999877899999999999999999988777 589999999988642
Q ss_pred --C-CCccEEEEcccc
Q 022864 128 --E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 --~-~~~D~i~~~~~l 140 (291)
. .+||.|+++...
T Consensus 93 ~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 93 TLGIEKVDGILMDLGV 108 (301)
T ss_dssp HTTCSCEEEEEEECSC
T ss_pred hcCCCCCCEEEEcCcc
Confidence 1 479999987644
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=100.93 Aligned_cols=88 Identities=14% Similarity=0.252 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+++.+
T Consensus 15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHH
Confidence 345667788888888999999999999999999987 67999999999999999988754 34899999999997653
Q ss_pred -----CCccEEEEccccc
Q 022864 129 -----ASYDRIYSIEMFE 141 (291)
Q Consensus 129 -----~~~D~i~~~~~l~ 141 (291)
++|| |+++.++.
T Consensus 91 ~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp GSCCSSCEE-EEEECCHH
T ss_pred HhccCCCeE-EEecCCcc
Confidence 3577 77776663
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=109.89 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC------------------------------------------CC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY------------------------------------------SN 87 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~------------------------------------------~~ 87 (291)
.+...++...+..++.+|||.+||+|.+++.++... +.
T Consensus 177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 445566777777888999999999999999887642 12
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC---CCccEEEEccccccc----ccHHHHHHHHH---hc
Q 022864 88 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKIS---KW 156 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~~----~~~~~~l~~~~---~~ 156 (291)
.+++|+|+++.+++.|++|+...|++ .+.+.++|+.++..+ ++||+|+++.++..- .+...+.+.+. +.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 58999999999999999999999995 499999999987544 289999999987532 23444444444 44
Q ss_pred cccCeeEEEEeecc
Q 022864 157 MKEDTLLFVHHFCH 170 (291)
Q Consensus 157 LkpgG~l~~~~~~~ 170 (291)
+.|||.+++.+...
T Consensus 337 ~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 337 QFGGWNLSLFSASP 350 (703)
T ss_dssp HCTTCEEEEEESCH
T ss_pred hCCCCeEEEEeCCH
Confidence 55899998877654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-11 Score=100.35 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH-------HHHHHHHHHHHHhCCC-CeEEEEccccCCc--cC-
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK-------TQKEFIEEQCRVLELQ-NVEIIVADISTFE--ME- 128 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~- 128 (291)
...++.+|||+|||+|..+..+++. +.+|+++|+|+ .+++.++++++.+++. +++++++|+.++. .+
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence 4456789999999999999999986 78999999999 9999999888777763 5999999998852 22
Q ss_pred --CCccEEEEcccccc
Q 022864 129 --ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 --~~~D~i~~~~~l~~ 142 (291)
.+||+|+++.++.+
T Consensus 158 ~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHCCCSEEEECCCC--
T ss_pred cCCCccEEEECCCCCC
Confidence 58999999887654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=106.00 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=90.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCC----CCCCEEEEEcCCcchH---HHHHHHHC-CCCEEEEEcCCHHHHHHHHHHH
Q 022864 36 YFSDASKTLEDAEKAMLELYCERSRL----EDGHTVLDVGCGWGSL---SLYIAQKY-SNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~---~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~ 107 (291)
.|+.+....+..+.+....+.++... .....|||+|||+|.+ +..++++. ...+|++||.|+ +...+++..
T Consensus 326 vFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v 404 (637)
T 4gqb_A 326 VFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENW 404 (637)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHH
T ss_pred hhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHH
Confidence 34444444555556666666555422 2346899999999998 44444442 123789999998 456778888
Q ss_pred HHhCC-CCeEEEEccccCCccCCCccEEEEcccccc--cccHHHHHHHHHhccccCeeEE
Q 022864 108 RVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEH--MKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 108 ~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~--~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
+.++. ++|+++++|++++..++++|+|||-.+=.. -+.....+....+.|||||+++
T Consensus 405 ~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 405 QFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 88888 579999999999988899999998432111 1344577888899999999864
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=107.55 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=102.8
Q ss_pred cCCChHHHHHhhCC---CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-----
Q 022864 15 YELPTSFFKLVLGK---YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS----- 86 (291)
Q Consensus 15 yd~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~----- 86 (291)
.|.-.+.|+.++.. ...-..|.|-.+ ......+++.+...++ +|||.+||+|.+...+++...
T Consensus 202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP--------~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~ 272 (544)
T 3khk_A 202 KDILGHVYEYFLGQFALAEGKQGGQYYTP--------KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANV 272 (544)
T ss_dssp CCSHHHHHHHHHHHHHHTTTCCSTTTCCC--------HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCccCCeEeCC--------HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccc
Confidence 45556788877742 111122444333 3344555555555555 999999999999888754321
Q ss_pred ----------CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc--CCCccEEEEccccccc----------
Q 022864 87 ----------NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--EASYDRIYSIEMFEHM---------- 143 (291)
Q Consensus 87 ----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~~~~~l~~~---------- 143 (291)
...++|+|+++.++..|+.++...|++ ++.+.++|....+. ..+||+|+++.++..-
T Consensus 273 ~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d 352 (544)
T 3khk_A 273 KHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADD 352 (544)
T ss_dssp HTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTC
T ss_pred cccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhh
Confidence 458999999999999999999888873 34447888766442 2789999999988631
Q ss_pred ---------------c----cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 144 ---------------K----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 144 ---------------~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+ ..-.++..+.+.|+|||++.+..|..
T Consensus 353 ~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 353 PRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp GGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred hhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 0 01258999999999999998887753
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-10 Score=103.87 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=89.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCC--cc--CCCc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTF--EM--EASY 131 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~--~~--~~~~ 131 (291)
..++.+|||.+||+|.+...+++.. +...++|+|+++.++..|+.++...|+ +++.+.++|.... +. ..+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 3467899999999999999888774 257899999999999999999988888 4688999998875 32 2789
Q ss_pred cEEEEccccccc--------cc---------------HHHHHHHHHhccc-cCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHM--------KN---------------YQNLLKKISKWMK-EDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~--------~~---------------~~~~l~~~~~~Lk-pgG~l~~~~~~~ 170 (291)
|+|++++++..- .+ --.++..+.+.|+ |||++.+..|..
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 999999877421 00 1247899999999 999998887764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-10 Score=96.70 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
...++.+++.+...++.+|||||||+|.++..+++..+. .+|+|+|+|+.+++.++++. .++++++++|+.+++
T Consensus 28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFD 103 (279)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCC
Confidence 345667778888888999999999999999999987421 33999999999999999883 247999999999987
Q ss_pred cCC-------CccEEEEccccc
Q 022864 127 MEA-------SYDRIYSIEMFE 141 (291)
Q Consensus 127 ~~~-------~~D~i~~~~~l~ 141 (291)
++. ..+.|+++.++.
T Consensus 104 ~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 104 FGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp GGGGSCSSSSCCEEEEEECCHH
T ss_pred hhHhcccccCCceEEEEccCcc
Confidence 552 234677776653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=92.29 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++.+|||||||+|.++..+++. +..+|+++|+|+.+++.++++ +..+++++++|+.+++.+
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFC 91 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChh
Confidence 456677888888888999999999999999999976 248999999999999998876 234799999999998765
Q ss_pred C--CccEEEEcccccccccHHHHHHHHHhcc--ccCeeEEEE
Q 022864 129 A--SYDRIYSIEMFEHMKNYQNLLKKISKWM--KEDTLLFVH 166 (291)
Q Consensus 129 ~--~~D~i~~~~~l~~~~~~~~~l~~~~~~L--kpgG~l~~~ 166 (291)
. ....|+++.+++ + ...++.++.+.. -+.+.++++
T Consensus 92 ~~~~~~~vv~NlPy~-i--~~~il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 92 SLGKELKVVGNLPYN-V--ASLIIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp GSCSSEEEEEECCTT-T--HHHHHHHHHHTGGGCSEEEEEEE
T ss_pred HccCCcEEEEECchh-c--cHHHHHHHHhcCCCCceEEEEEe
Confidence 2 123667776663 2 233444444332 234455553
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=97.54 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=70.1
Q ss_pred HHHHHHcCCCCC--CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C-C-CCeEEEEcc
Q 022864 53 ELYCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L-QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~-~~v~~~~~d 121 (291)
+.+++.+...++ .+|||+|||+|..+..++.. +++|+++|+++.+.+.++++.+.. + + ++++++++|
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 445566666677 89999999999999999988 678999999998877776665422 2 3 479999999
Q ss_pred ccCCcc--CCCccEEEEccccccc
Q 022864 122 ISTFEM--EASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~--~~~~D~i~~~~~l~~~ 143 (291)
..++.. +.+||+|+++.++.+-
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPHK 177 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHHHhCcccCCEEEEcCCCCCc
Confidence 987432 2579999999988664
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-10 Score=104.46 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCcchHHHHH---HHHC----------CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-
Q 022864 63 DGHTVLDVGCGWGSLSLYI---AQKY----------SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l---a~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~- 127 (291)
.+..|||+|||+|.++... ++.. ...+|++||.|+..+..++.... +++ ++|+++.+|++++..
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccc
Confidence 3568999999999996432 2211 13499999999987766555443 676 469999999999876
Q ss_pred -----CCCccEEEEccccccc---ccHHHHHHHHHhccccCeeEE
Q 022864 128 -----EASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 128 -----~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 164 (291)
++++|+|||-.+ ..+ +-..+.+..+.+.|||||+++
T Consensus 488 ~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 488 AKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 689999999554 222 345678888899999999864
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-10 Score=101.33 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CCCCeEEEEccccCC-cc--CCCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--ELQNVEIIVADISTF-EM--EASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~v~~~~~d~~~~-~~--~~~~D~i~~~ 137 (291)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++++.. |+++++++++|+.+. .. .++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4889999999999999999876 779999999999999999999988 777899999999985 22 1589999998
Q ss_pred cccc
Q 022864 138 EMFE 141 (291)
Q Consensus 138 ~~l~ 141 (291)
.+..
T Consensus 171 PPrr 174 (410)
T 3ll7_A 171 PARR 174 (410)
T ss_dssp CEEC
T ss_pred CCCc
Confidence 6553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-09 Score=90.39 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--C---CCCeEEEEccccCCccC--CCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--E---LQNVEIIVADISTFEME--ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~---~~~v~~~~~d~~~~~~~--~~~D~ 133 (291)
.+...+||-||.|.|..++.+.+..+..+|+.||+++..++.+++.+... + -++++++.+|...+... ++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 45678999999999999999997655679999999999999999876531 2 25899999999997544 78999
Q ss_pred EEEccccccc--c--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEHM--K--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~--~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+....-..- . -..++++.++++|+|||+++.+..+.
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 9986432111 1 23578999999999999999876544
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=81.45 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEc
Q 022864 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVA 120 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~ 120 (291)
+...+.+.+...+ .+..+|||+||| ..+..+++. ++.+|+.+|.+++..+.++++++..|+ ++++++.+
T Consensus 16 v~~~~~~~L~~~l-----~~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~g 87 (202)
T 3cvo_A 16 MPPAEAEALRMAY-----EEAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWT 87 (202)
T ss_dssp SCHHHHHHHHHHH-----HHCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHh-----hCCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 4444455555433 246799999985 677777763 478999999999999999999999885 47999999
Q ss_pred cccCC---------------c--------cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 121 DISTF---------------E--------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 121 d~~~~---------------~--------~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+.+. + .. ++||+|+...... ...+..+.+.|+|||++++..
T Consensus 88 da~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-----~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 88 DIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-----VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp CCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-----HHHHHHHHHHCSSCEEEEETT
T ss_pred CchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc-----hhHHHHHHHhcCCCeEEEEeC
Confidence 96542 1 12 6899999987432 355666779999999997743
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.9e-10 Score=93.86 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE--EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK--ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
..++.+++.+...++.+|||||||+|.++. +. + +.+ |+++|+++.+++.++++.... ++++++++|+.+++.
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~--~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G--ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H--TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h--CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCH
Confidence 456677777788889999999999999999 65 4 345 999999999999988766432 479999999998764
Q ss_pred CC------CccEEEEccccc
Q 022864 128 EA------SYDRIYSIEMFE 141 (291)
Q Consensus 128 ~~------~~D~i~~~~~l~ 141 (291)
+. ..|.|+++.++.
T Consensus 82 ~~~~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHHHTSCEEEEEECCTT
T ss_pred HHhhcccCCceEEEECCCCC
Confidence 32 346888887764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-10 Score=94.01 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
-++.++.++..+.++.+|||||||+|.++..++++.+...++|+|++..+....... ...+. ++.....++......
T Consensus 61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~~l~~ 138 (277)
T 3evf_A 61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIHRLEP 138 (277)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTTTSCC
T ss_pred HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceehhcCC
Confidence 356677777667888999999999999999988765445788888874421000000 00111 445556665444444
Q ss_pred CCccEEEEccccc----ccccHH--HHHHHHHhccccC-eeEEEEeec
Q 022864 129 ASYDRIYSIEMFE----HMKNYQ--NLLKKISKWMKED-TLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~~l~----~~~~~~--~~l~~~~~~Lkpg-G~l~~~~~~ 169 (291)
.+||+|+|..+.+ .++... .+++.+.++|+|| |.+++..+.
T Consensus 139 ~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 139 VKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 7899999987665 222212 3578889999999 999997775
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-09 Score=98.62 Aligned_cols=110 Identities=10% Similarity=0.028 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC---CCEEEEEcCCHHHHHHH--HHHHHH----hCCCCeEEEEccccCCcc--CCC
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS---NCKITGICNSKTQKEFI--EEQCRV----LELQNVEIIVADISTFEM--EAS 130 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~---~~~v~~vD~s~~~~~~a--~~~~~~----~~~~~v~~~~~d~~~~~~--~~~ 130 (291)
.++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +.++.. .+.+...+...|+..... ..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4678999999999999999998763 35899999999999998 444333 233334566667766322 278
Q ss_pred ccEEEEccccccc---c--------------------------cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHM---K--------------------------NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~---~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
||+|+++.++... . -...+++.+.+.|+|||++.+..|...
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 9999999998321 0 023468889999999999999887653
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=90.53 Aligned_cols=124 Identities=13% Similarity=0.123 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCCC-----CCEEEEEcCCcchHHHHHHH--------HC-------CCCEEEEEcCCHHHHHHHHHHHH
Q 022864 49 KAMLELYCERSRLED-----GHTVLDVGCGWGSLSLYIAQ--------KY-------SNCKITGICNSKTQKEFIEEQCR 108 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~-----~~~vLDiGcG~G~~~~~la~--------~~-------~~~~v~~vD~s~~~~~~a~~~~~ 108 (291)
..++...++.+...+ ..+|+|+|||+|..+..++. ++ |..+|...|+..+.....-+...
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 556666666665543 58999999999999888732 22 56789999987776544333222
Q ss_pred Hh-----------CC-CCeEEEEc---cccCCccC-CCccEEEEcccccccc----------------------------
Q 022864 109 VL-----------EL-QNVEIIVA---DISTFEME-ASYDRIYSIEMFEHMK---------------------------- 144 (291)
Q Consensus 109 ~~-----------~~-~~v~~~~~---d~~~~~~~-~~~D~i~~~~~l~~~~---------------------------- 144 (291)
.. +. .+-.|+.+ .+-.-.++ +++|+|+|+.++||+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v 192 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKT 192 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHH
T ss_pred hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHH
Confidence 10 00 01123333 22222334 8999999999999985
Q ss_pred ----------cHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 145 ----------NYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 145 ----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
|...+|+...+.|+|||++++...+..+
T Consensus 193 ~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 193 TTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 4455788899999999999999998765
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=89.94 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=91.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CCeEEEEccccCCcc--C
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEM--E 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~--~ 128 (291)
..++.++|.+|||+++|.|+-+..+++..++..|+++|+++.-++.++++++..+. .++.+...|...+.. .
T Consensus 142 ~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~ 221 (359)
T 4fzv_A 142 LALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEG 221 (359)
T ss_dssp HHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHST
T ss_pred HHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcc
Confidence 34578899999999999999999999876566899999999999999999987764 368888899887642 2
Q ss_pred CCccEEEEcccccc-----c---c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEH-----M---K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~-----~---~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+.||.|++..+... . + -..+++.+..+.|||||+|+-++.+.
T Consensus 222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 78999998654321 0 0 12468899999999999999888764
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.9e-08 Score=88.91 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=103.9
Q ss_pred CCChHHHHHhhCC---CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-------
Q 022864 16 ELPTSFFKLVLGK---YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY------- 85 (291)
Q Consensus 16 d~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~------- 85 (291)
|.-.+.|+.++.. ... ..|-|-.+ ....+.+++.+...++.+|+|.+||+|++...+.+..
T Consensus 176 d~lG~~yE~ll~~~~~~~g-~~GqfyTP--------~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~ 246 (530)
T 3ufb_A 176 HTLSRLYETMLREMRDAAG-DSGEFYTP--------RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTV 246 (530)
T ss_dssp HHHHHHHHHHHHHHTTSSS-SCCCCCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHHHHhcC-cCceECCc--------HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccch
Confidence 4456778888753 111 12444333 4455666777777888999999999999988776431
Q ss_pred ------CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----CCccEEEEcccccccc----------
Q 022864 86 ------SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----ASYDRIYSIEMFEHMK---------- 144 (291)
Q Consensus 86 ------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~D~i~~~~~l~~~~---------- 144 (291)
....++|+|+++.+...|+-++--.|.+...+..+|....+.. .+||+|++++++..-.
T Consensus 247 ~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~ 326 (530)
T 3ufb_A 247 EDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPE 326 (530)
T ss_dssp HHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCG
T ss_pred hHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCch
Confidence 1246999999999999999988888886667788887654321 5799999999984221
Q ss_pred -----c-HHHHHHHHHhccc-------cCeeEEEEeecc
Q 022864 145 -----N-YQNLLKKISKWMK-------EDTLLFVHHFCH 170 (291)
Q Consensus 145 -----~-~~~~l~~~~~~Lk-------pgG~l~~~~~~~ 170 (291)
+ ...++..+.+.|| |||++.+..|..
T Consensus 327 ~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 327 DMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp GGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred hcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence 1 1246777777776 799999888753
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-09 Score=90.06 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc--cccCCcc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~ 127 (291)
-++.++.++..+.++.+|||||||+|.++.+++++.+...|.|+|++..+...+.. ....+. ++..... |+..++
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~-~ii~~~~~~dv~~l~- 153 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGW-NLIRFKDKTDVFNME- 153 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCGGGSC-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCC-ceEEeeCCcchhhcC-
Confidence 35667777777788999999999999999999876545679999997653211110 000111 3333333 333332
Q ss_pred CCCccEEEEccccc----ccccHH--HHHHHHHhccccC--eeEEEEeec
Q 022864 128 EASYDRIYSIEMFE----HMKNYQ--NLLKKISKWMKED--TLLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~i~~~~~l~----~~~~~~--~~l~~~~~~Lkpg--G~l~~~~~~ 169 (291)
..++|+|+|..+.. .++... .+++-+.++|+|| |.+++-.+.
T Consensus 154 ~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 VIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 27899999987765 122111 3577778999999 999998775
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=71.63 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=75.5
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcc-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022864 31 KYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 31 ~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
+.+++..+... .+ .+.....+.+.. .++.+|||+|||.| ..+..|+++. +..|+++|+++..++
T Consensus 9 ~~~~~~~~~~~-~m---~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~-------- 73 (153)
T 2k4m_A 9 HHSSGLVPRGS-HM---WNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG-------- 73 (153)
T ss_dssp CCCCCCCCCCC-HH---HHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT--------
T ss_pred cccCCcccchh-hH---HHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc--------
Confidence 34556655332 23 233444444443 45679999999999 5999999744 899999999998543
Q ss_pred hCCCCeEEEEccccCCccC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 110 LELQNVEIIVADISTFEME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 110 ~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+++.|+.+.... +.||+|.+..+=. ++...+-++.+ +-|.-++|...+.+.
T Consensus 74 -------~v~dDiF~P~~~~Y~~~DLIYsirPP~---El~~~i~~lA~--~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 74 -------IVRDDITSPRMEIYRGAALIYSIRPPA---EIHSSLMRVAD--AVGARLIIKPLTGED 126 (153)
T ss_dssp -------EECCCSSSCCHHHHTTEEEEEEESCCT---TTHHHHHHHHH--HHTCEEEEECBTTBC
T ss_pred -------eEEccCCCCcccccCCcCEEEEcCCCH---HHHHHHHHHHH--HcCCCEEEEcCCCCc
Confidence 889999885544 6899998765543 33444444444 246677776555443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=80.48 Aligned_cols=121 Identities=7% Similarity=0.013 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCH----------------------
Q 022864 46 DAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSK---------------------- 97 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~---------------------- 97 (291)
..+...+..+++.+. .....+|||+|+..|..+..++... ++.+|+++|...
T Consensus 88 ~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~ 167 (282)
T 2wk1_A 88 IKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRN 167 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccccc
Confidence 333445555555432 2335599999999999998887653 367899999642
Q ss_pred ----HHHHHHHHHHHHhCC--CCeEEEEccccCCcc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 98 ----TQKEFIEEQCRVLEL--QNVEIIVADISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 98 ----~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..++.+++++++.|+ ++++++.+|+.+... .++||+|+...-. .......++.+.+.|+|||++++...
T Consensus 168 ~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 168 SVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp HHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred ccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 146778899999887 689999999987432 2689999998643 23456789999999999999988554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.2e-08 Score=85.06 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=75.3
Q ss_pred CCEEEEEcCCcchHHHHHHHH-----------------CCCCEEEEEcCC-----------HHHHHHHHHHHHHhCC-CC
Q 022864 64 GHTVLDVGCGWGSLSLYIAQK-----------------YSNCKITGICNS-----------KTQKEFIEEQCRVLEL-QN 114 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~-----------------~~~~~v~~vD~s-----------~~~~~~a~~~~~~~~~-~~ 114 (291)
..+|+|+||++|..+..+... .|..+|+..|+. +.+.+.++ +..|. .+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 589999999999999888765 255789999987 33332221 12221 13
Q ss_pred eEEEEccccCC---ccC-CCccEEEEcccccccccHH---------------------------------------HHHH
Q 022864 115 VEIIVADISTF---EME-ASYDRIYSIEMFEHMKNYQ---------------------------------------NLLK 151 (291)
Q Consensus 115 v~~~~~d~~~~---~~~-~~~D~i~~~~~l~~~~~~~---------------------------------------~~l~ 151 (291)
..|+.+....+ .++ +++|+|+|+.++||+.+.+ .+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666655543 334 8999999999999984332 1266
Q ss_pred HHHhccccCeeEEEEeeccCCc
Q 022864 152 KISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 152 ~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
...+.|+|||++++...+..+.
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHhccCCeEEEEEecCCCc
Confidence 6689999999999999988664
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.57 E-value=8.3e-08 Score=80.87 Aligned_cols=84 Identities=8% Similarity=0.093 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 127 (291)
+++.+++.+...++..+||.+||.|+.+..++++ +.+|+|+|.++.+++.+++ ... +++.++++++.++..
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHH
Confidence 4667778888888999999999999999999987 7799999999999998887 533 489999999998642
Q ss_pred --C-CCccEEEEcccc
Q 022864 128 --E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 --~-~~~D~i~~~~~l 140 (291)
. .++|.|++...+
T Consensus 84 ~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 84 ALGVERVDGILADLGV 99 (285)
T ss_dssp HTTCSCEEEEEEECSC
T ss_pred HcCCCCcCEEEeCCcc
Confidence 1 579999986544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=80.03 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=72.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHH-------CCC-----CEEEEEcCCH---HHHH-----------HHHHHHHHh-----
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQK-------YSN-----CKITGICNSK---TQKE-----------FIEEQCRVL----- 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~-------~~~-----~~v~~vD~s~---~~~~-----------~a~~~~~~~----- 110 (291)
.++.+|||+|+|+|..+..+++. .|. .+++++|..| +.+. .++++....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45679999999999988887654 453 5899999876 4333 455554431
Q ss_pred ---------CCCCeEEEEccccCCccC--C----CccEEEEcccc-ccccc--HHHHHHHHHhccccCeeEEE
Q 022864 111 ---------ELQNVEIIVADISTFEME--A----SYDRIYSIEMF-EHMKN--YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 111 ---------~~~~v~~~~~d~~~~~~~--~----~~D~i~~~~~l-~~~~~--~~~~l~~~~~~LkpgG~l~~ 165 (291)
+..+++++.+|+.+.... . .||+|+....- ...++ ...+++.+.++|+|||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 113578999998874221 2 79999996421 11122 36799999999999999875
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-07 Score=80.29 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---CC-----CCeEEEEccccCCcc-----C
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---EL-----QNVEIIVADISTFEM-----E 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~-----~~v~~~~~d~~~~~~-----~ 128 (291)
.++.+||=||.|.|..++++.+. +..+|+.||+++..++.+++.+... .. ++++++.+|...+.. .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999864 5689999999999999999865321 01 358999999887542 2
Q ss_pred CCccEEEEccccccc----------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEHM----------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~----------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++||+|+....-... --..++++.+++.|+|||+++.+.-
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 689999987422110 1135788999999999999988653
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-07 Score=75.82 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~ 127 (291)
.-++..+.++..+.++.+||||||++|+++.+++......+|+|+|+...-.+. -..+...|.+.++|..+ |+..++.
T Consensus 64 ~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~ 142 (267)
T 3p8z_A 64 SAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP 142 (267)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC
Confidence 345777777777789999999999999999998877644579999986652210 00111234456999999 9876654
Q ss_pred CCCccEEEEccccccc-c--cH---HHHHHHHHhccccCeeEEEEeecc
Q 022864 128 EASYDRIYSIEMFEHM-K--NY---QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~-~--~~---~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++|.|+|...=..- + +. -++|+-+.++|++ |-+++-.+.+
T Consensus 143 -~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 143 -EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred -ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 789999996422111 1 11 2367777899999 7888766644
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.5e-07 Score=78.43 Aligned_cols=86 Identities=13% Similarity=0.194 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
..+|++||||||.+|+++..++++ +.+|++||+.+-. .... ..++|+++++|.....+. .++|+|+|..+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-----~~l~--~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-----QSLM--DTGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-----HHHH--TTTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-----hhhc--cCCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 468999999999999999999987 7899999976421 1111 224899999999998766 78999999866
Q ss_pred ccccccHHHHHHHHHhcccc
Q 022864 140 FEHMKNYQNLLKKISKWMKE 159 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~Lkp 159 (291)
.. +...+..+.++|..
T Consensus 280 ~~----p~~~~~l~~~wl~~ 295 (375)
T 4auk_A 280 EK----PAKVAALMAQWLVN 295 (375)
T ss_dssp SC----HHHHHHHHHHHHHT
T ss_pred CC----hHHhHHHHHHHHhc
Confidence 53 33444444444443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.44 E-value=7.5e-08 Score=84.61 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHH----------------CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQK----------------YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 124 (291)
+...+|+|+||++|..+..+... .|..+|+..|+..+....+-+....... .+..|+.+....
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999887765443 3457899999988887665544322000 023455554443
Q ss_pred ---CccC-CCccEEEEccccccccc---------------------------------HHHHHHHHHhccccCeeEEEEe
Q 022864 125 ---FEME-ASYDRIYSIEMFEHMKN---------------------------------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 125 ---~~~~-~~~D~i~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
-.++ +++|+|+|+.++||+.+ ...+|+...+.|+|||++++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3344 89999999999999743 2345888899999999999999
Q ss_pred eccCCc
Q 022864 168 FCHKTF 173 (291)
Q Consensus 168 ~~~~~~ 173 (291)
.+..+.
T Consensus 210 ~gr~~~ 215 (359)
T 1m6e_X 210 LGRRSE 215 (359)
T ss_dssp EECSSS
T ss_pred ecCCCC
Confidence 988764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.9e-07 Score=75.46 Aligned_cols=119 Identities=20% Similarity=0.294 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~ 127 (291)
.-++..+.++..+.++.+||||||++|+++.+++.......|+|+|+...-.+. -..+...+.+-|.+..+ |+..+++
T Consensus 80 ~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~ 158 (321)
T 3lkz_A 80 TAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS 158 (321)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC
Confidence 345777777777788999999999999999988877634579999987651100 00000112223778877 8877665
Q ss_pred CCCccEEEEcccccccccH-------HHHHHHHHhccccC-eeEEEEeecc
Q 022864 128 EASYDRIYSIEMFEHMKNY-------QNLLKKISKWMKED-TLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~-------~~~l~~~~~~Lkpg-G~l~~~~~~~ 170 (291)
.++|+|+|.-. +.-+++ -.+|+-+.++|++| |-+++-.+.+
T Consensus 159 -~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 -ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp -CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred -CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 67999999765 333221 23677778899998 8888877654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-06 Score=72.25 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc--cccCCccC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~ 128 (291)
++.++.++--..++.+||||||++|+++..++++.+...|.|+|+...+...... ....+. ++..... |+..+. +
T Consensus 69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~-~ 145 (300)
T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP-T 145 (300)
T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC-C
T ss_pred HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC-C
Confidence 4555555533468999999999999999999976544579999997542100000 000011 2332333 333322 2
Q ss_pred CCccEEEEcccccccc----c---HHHHHHHHHhccccC-eeEEEEeec
Q 022864 129 ASYDRIYSIEMFEHMK----N---YQNLLKKISKWMKED-TLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~----~---~~~~l~~~~~~Lkpg-G~l~~~~~~ 169 (291)
.++|+|+|..+-. .. | ...+++-+.++|+|| |.+++-.+.
T Consensus 146 ~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 146 EPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 7899999977655 21 1 134577788999999 999998775
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-07 Score=76.19 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEc-cccCCcc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVA-DISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~-d~~~~~~ 127 (291)
-++.++-++.-++|+.+||||||+.|+++.+++++.+-..|.|.++.... . ....... .|..=+.+.++ |+.++.
T Consensus 60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~- 136 (269)
T 2px2_A 60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKP- 136 (269)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSC-
T ss_pred HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCC-
Confidence 45667766666689999999999999999999876211133444443220 0 0000000 11111355556 998754
Q ss_pred CCCccEEEEccccccc---ccHH---HHHHHHHhccccCe-eEEEEeec
Q 022864 128 EASYDRIYSIEMFEHM---KNYQ---NLLKKISKWMKEDT-LLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~---~~~~---~~l~~~~~~LkpgG-~l~~~~~~ 169 (291)
+.++|+|+|...=..- -|.. .+++-+.++|+||| .+++-.+.
T Consensus 137 ~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 137 SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 3689999997633211 1221 25667779999999 89887775
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.19 E-value=6.6e-06 Score=70.74 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 111 (291)
.++..++.... .++..|||++||+|..+..+++. +.+++|+|+++.+++.+++++....
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 45556666554 67889999999999999998876 7899999999999999999987653
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-05 Score=64.96 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=74.3
Q ss_pred HHHHHHHHHc-----CCCCCCEEEEEcC------CcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEE
Q 022864 50 AMLELYCERS-----RLEDGHTVLDVGC------GWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEI 117 (291)
Q Consensus 50 ~~~~~~~~~~-----~~~~~~~vLDiGc------G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~ 117 (291)
.+...+++-+ ..+.+++|||+|+ -+|. ..+.+..|. +.|+++|+.+-.. ... .+
T Consensus 91 ~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~ 156 (344)
T 3r24_A 91 AKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD-ST 156 (344)
T ss_dssp HHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS-EE
T ss_pred HHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC-eE
Confidence 3444555433 4578999999996 5676 344555664 6999999977521 113 45
Q ss_pred EEccccCCccCCCccEEEEccccccc-----c------cHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 118 IVADISTFEMEASYDRIYSIEMFEHM-----K------NYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 118 ~~~d~~~~~~~~~~D~i~~~~~l~~~-----~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+++|+.......+||+|+|...-... . -.+.+++-+.+.|+|||.|++-.+-...
T Consensus 157 IqGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 157 LIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp EESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EEccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 89998876656899999996532111 1 1455777788999999999998775443
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=8e-06 Score=70.42 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 127 (291)
+++++++.+...++..++|..||.|+.+..+++.. |..+|+|+|.++.+++.++ +. ..+++.++++++.++..
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L 120 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYV 120 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHH
Confidence 67888899999999999999999999999999874 6789999999999988774 22 22589999999888631
Q ss_pred ---C--CCccEEEEcccc
Q 022864 128 ---E--ASYDRIYSIEMF 140 (291)
Q Consensus 128 ---~--~~~D~i~~~~~l 140 (291)
. +++|.|+.+.-.
T Consensus 121 ~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 121 AERDLIGKIDGILLDLGV 138 (347)
T ss_dssp HHTTCTTCEEEEEEECSC
T ss_pred HhcCCCCcccEEEECCcc
Confidence 1 258988887644
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.83 E-value=5e-05 Score=66.53 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCC------CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022864 49 KAMLELYCERSRLE------DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 122 (291)
...++.+++.++.. ++..|||||.|.|.++..|++.....+|+++|+++..+...++.. . .++++++.+|+
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~ 114 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDP 114 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCT
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCc
Confidence 45566777776655 358999999999999999998643568999999999998887765 2 35899999999
Q ss_pred cCCc
Q 022864 123 STFE 126 (291)
Q Consensus 123 ~~~~ 126 (291)
.++.
T Consensus 115 l~~~ 118 (353)
T 1i4w_A 115 YDWS 118 (353)
T ss_dssp TCHH
T ss_pred cchh
Confidence 7653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.81 E-value=5.3e-06 Score=69.97 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=80.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----ccCCCccEEEEcc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~D~i~~~~ 138 (291)
+..+||+-+|+|.+++.+.+. +.+++.+|.++..++..+++++. .+++.++..|.... +...+||+|++..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 567999999999999999874 68999999999999888887754 24799999997552 2225799999999
Q ss_pred cccccccHHHHHHHHHh--ccccCeeEEEEeec
Q 022864 139 MFEHMKNYQNLLKKISK--WMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 169 (291)
+++.-.+..++++.+.+ .+.|+|++++=-|.
T Consensus 168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 168 SYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCCCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 99765567777777765 45689998885543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.73 E-value=7.4e-05 Score=62.84 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 111 (291)
.++..+++... .++..|||..||+|..+..+.+. +.+++|+|+++..++.++++++..+
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 34555655543 67889999999999999998876 7899999999999999999987654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=3e-05 Score=83.81 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c-cCCCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-----NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E-MEASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~i 134 (291)
.+..+||+||.|+|..+..+.+... ..+++..|+|+...+.++++++.. ++.....|..+. . .++.||+|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC-----CCEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccCCCCceeEE
Confidence 4678999999999987776655432 237899999998888888776553 233322243332 1 12679999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++.++++..++....+.+++++|||||.+++...
T Consensus 1316 ia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1316 VCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp EEECC--------------------CCEEEEEEC
T ss_pred EEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999998888899999999999999999988654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0026 Score=55.29 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---------------------CCCeEEEEc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------LQNVEIIVA 120 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------------------~~~v~~~~~ 120 (291)
.+...|+.||||.......+...+++.+++-||. |+.++.-++.+...+ .++..++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 4568999999999999999987766788899998 888877777666541 147899999
Q ss_pred cccCCcc---------C-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 121 DISTFEM---------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 121 d~~~~~~---------~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+.+... . ....++++-.++.++ +...++++.+.+.. |+|.+++.+..
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 9987321 2 456889999999999 45667888888876 77776554443
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0043 Score=51.71 Aligned_cols=114 Identities=10% Similarity=0.087 Sum_probs=76.5
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-------CCCCEEEEEc-----CCHH----------------------H
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGIC-----NSKT----------------------Q 99 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-------~~~~~v~~vD-----~s~~----------------------~ 99 (291)
.+.+.+...+| .|+|+||-.|..+..++.. .+..+|+++| +.+. .
T Consensus 61 ~l~~~i~~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~ 139 (257)
T 3tos_A 61 ALYRQVLDVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAY 139 (257)
T ss_dssp HHHHHTTTSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHH
T ss_pred HHHHHhhCCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHH
Confidence 45555444455 9999999999988887652 2457899999 3221 1
Q ss_pred HHHHHH---HHHHhCC--CCeEEEEccccCCcc------C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 100 KEFIEE---QCRVLEL--QNVEIIVADISTFEM------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 100 ~~~a~~---~~~~~~~--~~v~~~~~d~~~~~~------~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++...+ +.+..+. ++++++.+++.+..+ + .++|+|....-. -......++.+...|+|||++++..
T Consensus 140 l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 140 LKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcC
Confidence 111111 1112233 579999999987421 2 469999987642 2445678999999999999999977
Q ss_pred ecc
Q 022864 168 FCH 170 (291)
Q Consensus 168 ~~~ 170 (291)
.+.
T Consensus 218 ~~~ 220 (257)
T 3tos_A 218 LDN 220 (257)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0023 Score=57.34 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHH-HHCCC-CEEEEEcCCHHHHHHHHHHHHH---hCC-CCeEEEEccccCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIA-QKYSN-CKITGICNSKTQKEFIEEQCRV---LEL-QNVEIIVADISTF 125 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la-~~~~~-~~v~~vD~s~~~~~~a~~~~~~---~~~-~~v~~~~~d~~~~ 125 (291)
..++..|+|+|++.|..+..++ +..+. .+|+++|++|...+.++++++. ++. +++.++..-+.+-
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~~ 294 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGEN 294 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEECC
Confidence 4688999999999999999988 45543 7999999999999999999987 345 6888887766653
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.01 Score=51.01 Aligned_cols=117 Identities=7% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~ 127 (291)
.++..++.........|++||||.=.....+.. .++.+++-|| .|..++..++.+...+. ++..++.+|+.+ ..
T Consensus 90 ~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~ 166 (310)
T 2uyo_A 90 FFDTYFNNAVIDGIRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DW 166 (310)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CH
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hH
Confidence 444444433222335799999998777555441 1247999999 59999988888875432 468899999987 21
Q ss_pred ---------C-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 128 ---------E-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ---------~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. ...=++++-.++++++ +...+++.+...+.||+.+++.....
T Consensus 167 ~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 167 PPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp HHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred HHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 1 2345778888999984 46679999999889999998876543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.94 E-value=0.005 Score=53.37 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
.+.+++|+.||.|+++..+.+.. ...+.++|+++..++..+.+.... . .+|+.++... ..+|+|+...+.
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~~~~~D~l~~gpPC 81 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKTIPDHDILCAGFPC 81 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGGSCCCSEEEEECCC
T ss_pred CCCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhhCCCCCEEEECCCC
Confidence 35799999999999999998762 335788999999888877775321 1 6888876543 569999998766
Q ss_pred ccc
Q 022864 141 EHM 143 (291)
Q Consensus 141 ~~~ 143 (291)
..+
T Consensus 82 Q~f 84 (327)
T 2c7p_A 82 QAF 84 (327)
T ss_dssp TTT
T ss_pred CCc
Confidence 544
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0065 Score=53.73 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=56.3
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------CCCccEE
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------EASYDRI 134 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~D~i 134 (291)
.+++|+.||.|+++..+.+. |.+ |.++|+++..++..+.|. ++..++++|+.++.. ...+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 68999999999999999877 554 669999999877666553 356788899988642 2579999
Q ss_pred EEccccccc
Q 022864 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+...+...+
T Consensus 76 ~ggpPCQ~f 84 (376)
T 3g7u_A 76 IGGPPCQGF 84 (376)
T ss_dssp EECCCCCTT
T ss_pred EecCCCCCc
Confidence 998775444
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0038 Score=54.47 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=67.1
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+......++.+||-+|+|. |..+..+++.. +++|+++|.+++..+.++ +.|.+.+ + .+...+. +.+|+|
T Consensus 169 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~v--~-~~~~~~~--~~~D~v 238 (348)
T 3two_A 169 LKFSKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDAL----SMGVKHF--Y-TDPKQCK--EELDFI 238 (348)
T ss_dssp HHHTTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHH----HTTCSEE--E-SSGGGCC--SCEEEE
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH----hcCCCee--c-CCHHHHh--cCCCEE
Confidence 3455788999999999975 78888888776 889999999998776654 3554322 2 3332222 378998
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+-...-. ..++...++|+|+|++++.
T Consensus 239 id~~g~~------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 239 ISTIPTH------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EECCCSC------CCHHHHHTTEEEEEEEEEC
T ss_pred EECCCcH------HHHHHHHHHHhcCCEEEEE
Confidence 8643221 2466788899999998874
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0065 Score=54.10 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=67.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c------c
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~------~ 127 (291)
+.....++.+||-+|||. |.++..+++.. ++ +|+++|.+++.++.++ +.|. +.+..+-.+. . .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa---~~i~~~~~~~~~~~~~~~~ 250 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLS----DAGF---ETIDLRNSAPLRDQIDQIL 250 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHH----TTTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCC---cEEcCCCcchHHHHHHHHh
Confidence 556778999999999986 88888888766 67 9999999998766554 3443 2332211121 1 1
Q ss_pred C-CCccEEEEccccccc--------ccHHHHHHHHHhccccCeeEEEE
Q 022864 128 E-ASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
. ..+|+|+-...-... ......++.+.++|++||++++.
T Consensus 251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 1 369999865432210 01234688888999999998764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0074 Score=53.12 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022864 55 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------ 126 (291)
+.+....+++.+||-+|||. |..+..+++.. ++ +|+++|.+++..+.+++ .|.+ .++..+-.++.
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCC--EEecCCccCHHHHHHHh
Confidence 33556778999999999986 78888888766 66 79999999997766643 3542 12221111110
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+.+|+|+-...- ...++...+.|+|+|++++.
T Consensus 255 ~~gg~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 255 TDGGVNFALESTGS------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp TTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEe
Confidence 01368998864321 35678889999999998764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.003 Score=56.27 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=68.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc------c
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~------~ 127 (291)
......++.+||-+|||. |.++..+++.. ++ +|+++|.+++.++.++ +.|. +.+...-.+ +. .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~----~lGa---~~i~~~~~~~~~~~v~~~t 250 (398)
T 1kol_A 179 VTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAK----AQGF---EIADLSLDTPLHEQIAALL 250 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHH----HcCC---cEEccCCcchHHHHHHHHh
Confidence 456778999999999875 88888888876 66 7999999998766664 3454 222211111 10 1
Q ss_pred C-CCccEEEEccccc---------ccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 E-ASYDRIYSIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
. ..+|+|+-.-.-. +.++....++...++|++||++++.
T Consensus 251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 1 3699998654321 1233445788899999999998764
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0021 Score=56.15 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEcc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~~ 138 (291)
..+|+|+.||.|+++..+.+..- ...|.++|+++.+++..+.|+. +..++.+|+.++... ..+|+|+...
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 35899999999999999987721 1368999999998888777652 345778999887532 2699999988
Q ss_pred ccccc
Q 022864 139 MFEHM 143 (291)
Q Consensus 139 ~l~~~ 143 (291)
+...+
T Consensus 77 PCq~f 81 (343)
T 1g55_A 77 PCQPF 81 (343)
T ss_dssp C----
T ss_pred CCcch
Confidence 75443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.013 Score=51.22 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=65.9
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---ccCCc-----
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---ISTFE----- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~----- 126 (291)
+.....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++..+.++ +.|.+ .++..+ -.+..
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~--~vi~~~~~~~~~~~~~i~~ 237 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGAD--LVLQISKESPQEIARKVEG 237 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCS--EEEECSSCCHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCC--EEEcCcccccchHHHHHHH
Confidence 456778999999999985 78888888876 77 9999999998766554 34543 222211 01110
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+-...- ...++...++|+|+|++++.
T Consensus 238 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 238 QLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred HhCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEE
Confidence 01468998864321 34577788999999998764
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.014 Score=50.62 Aligned_cols=98 Identities=8% Similarity=0.093 Sum_probs=67.2
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CC
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EA 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~ 129 (291)
++.....++.+||-+|+|. |..+..+++.. +++|+++|.+++..+.+++ .|.+. .+...-.++.. .+
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEV--AVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp HHTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHS
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCE--EEeCCCcCHHHHHHHhCC
Confidence 3555778999999999975 88888888876 8899999999997766543 45421 22211111110 13
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-... ....++.+.+.|+|+|++++.
T Consensus 232 ~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 232 GAHGVLVTAV------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEeCC------CHHHHHHHHHHhccCCEEEEe
Confidence 6888876422 245678888999999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00045 Score=59.94 Aligned_cols=71 Identities=13% Similarity=0.020 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
++..+++.. ..++..|||..||+|..+....+. +.+.+|+|+++..++.+++++...+. ....+..|+.++
T Consensus 241 l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~i 311 (323)
T 1boo_A 241 LPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNI-SEEKITDIYNRI 311 (323)
T ss_dssp HHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHHHHH
Confidence 444555443 467889999999999999988766 78999999999999999888765543 233444444443
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=50.86 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=54.5
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~ 141 (291)
++|+|+-||.|+++.-+.+. |. .+.++|+++...+..+.|. .-.++.+|+.++... ...|+++...+..
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC------CSEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC------CCCcccCChhhCCHhhCCcccEEEecCCCC
Confidence 58999999999999988765 55 4669999999777666553 235778999987654 6799999877654
Q ss_pred cc
Q 022864 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 73 ~f 74 (331)
T 3ubt_Y 73 SW 74 (331)
T ss_dssp GT
T ss_pred Cc
Confidence 43
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.013 Score=51.40 Aligned_cols=100 Identities=15% Similarity=0.040 Sum_probs=68.2
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-----ccccC----C
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIV-----ADIST----F 125 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-----~d~~~----~ 125 (291)
+.....++.+||=+|+|. |..+..+++.. +++ |+++|.+++..+.+++. . ..-+.+.. .|+.+ .
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~---~~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-C---PEVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-C---TTCEEEECCSCCHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-c---hhcccccccccchHHHHHHHHHH
Confidence 556788999999999974 78888888876 776 99999999988877754 1 11223321 11111 0
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.....+|+|+-.-. -...++.+.++|++||++++..
T Consensus 248 t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 248 FGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp TSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECC
T ss_pred hCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEc
Confidence 11257999986432 1346778889999999988743
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.017 Score=50.33 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=65.7
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-ccCCc-------c
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-ISTFE-------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~~~-------~ 127 (291)
+.....++.+||-+|+|. |..+..+++.. +++|+++|.+++..+.++ ..|.+ ..+..+ -.+.. .
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~--~~~~~~~~~~~~~~i~~~~~ 234 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK----NCGAD--VTLVVDPAKEEESSIIERIR 234 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCS--EEEECCTTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH----HhCCC--EEEcCcccccHHHHHHHHhc
Confidence 455778999999999874 77788888776 788999999998766554 34543 122211 01110 1
Q ss_pred ---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 ---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...+|+|+-...- ...++...+.|+|+|++++.
T Consensus 235 ~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 235 SAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred cccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 2368998865322 34577788999999998764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.031 Score=49.10 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=66.6
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE---ccccCC------
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIV---ADISTF------ 125 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~------ 125 (291)
+.....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++..+.+++ .|.+. .+. .|+.+.
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~i~~~~~ 248 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEE----VGATA--TVDPSAGDVVEAIAGPVG 248 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCSE--EECTTSSCHHHHHHSTTS
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCCE--EECCCCcCHHHHHHhhhh
Confidence 566788999999999975 77888888876 76 99999999987666554 45421 121 111110
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...+.+|+|+-... ....++.+.++|++||++++.
T Consensus 249 ~~~gg~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 249 LVPGGVDVVIECAG------VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp SSTTCEEEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ccCCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEE
Confidence 01147899886422 135678888999999998774
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.031 Score=44.28 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 126 (291)
+.....++.+||..|+ |.|.....++... +++|+++|.+++..+.++ ..|.+ . . .|..+..
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~-~-~--~d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVE-Y-V--GDSRSVDFADEILEL 102 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCS-E-E--EETTCSTHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCC-E-E--eeCCcHHHHHHHHHH
Confidence 3456788999999994 4566666666554 789999999988665443 23432 1 1 1322211
Q ss_pred c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
. ...+|+++.+.. ...++.+.+.|+|+|++++.
T Consensus 103 ~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 103 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence 1 135899986532 24678888999999998764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.014 Score=49.89 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=72.8
Q ss_pred cccCCCCCCHHHHHHHHHHH--HHHHcCCCCCCEEEEEcCCcchHHHHHH----HHCCCCE--EEEEcCCH--------H
Q 022864 35 CYFSDASKTLEDAEKAMLEL--YCERSRLEDGHTVLDVGCGWGSLSLYIA----QKYSNCK--ITGICNSK--------T 98 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~vLDiGcG~G~~~~~la----~~~~~~~--v~~vD~s~--------~ 98 (291)
.|++.....+.+++...+.- +.++....+.-+|||+|-|+|....... +..|..+ ++.+|..+ .
T Consensus 66 ~YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~ 145 (308)
T 3vyw_A 66 PYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPE 145 (308)
T ss_dssp ESSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCT
T ss_pred ccCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchH
Confidence 34443334466765554432 2233323455789999999998654332 2345554 45666321 1
Q ss_pred HHHHHHH-HHHHhC---CCC--eEEEEccccCCcc--C-CCccEEEEcccccccccH----HHHHHHHHhccccCeeEEE
Q 022864 99 QKEFIEE-QCRVLE---LQN--VEIIVADISTFEM--E-ASYDRIYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 99 ~~~~a~~-~~~~~~---~~~--v~~~~~d~~~~~~--~-~~~D~i~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~ 165 (291)
......+ ...... ..+ +++..+|+.+... . .++|+|+..+ |..-.++ ..+++.+.++++|||++.-
T Consensus 146 ~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 146 PYREIHEFLLERVPEYEGERLSLKVLLGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp TSHHHHHHHHHHCSEEECSSEEEEEEESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred hHHHHHHHHHHhCccccCCcEEEEEEechHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 1111112 122111 123 5677889877432 2 4799999865 2222222 5799999999999998764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.011 Score=52.03 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=64.7
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---c-ccCCccCCCc
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA---D-ISTFEMEASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d-~~~~~~~~~~ 131 (291)
.....+++.+||-+|+|. |..+..+++.. +++|++++.+++.++.+++ .|.+. ++.. | ..... ..+
T Consensus 188 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~--~g~ 258 (369)
T 1uuf_A 188 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGADE--VVNSRNADEMAAHL--KSF 258 (369)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSE--EEETTCHHHHHTTT--TCE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcE--EeccccHHHHHHhh--cCC
Confidence 445778999999999984 77888888776 8899999999998776654 45421 2211 1 11111 568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+-...-. ..++...+.|+|+|.++..
T Consensus 259 Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 259 DFILNTVAAP------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEEECCSSC------CCHHHHHTTEEEEEEEEEC
T ss_pred CEEEECCCCH------HHHHHHHHHhccCCEEEEe
Confidence 9988653321 2356678899999998763
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.015 Score=50.83 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=66.8
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------- 126 (291)
++.....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++..+-.++.
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 159 AELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALE----YGAT--DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHH----HTCC--EEECGGGSCHHHHHHHHT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCc--eEEcCCCcCHHHHHHHHc
Confidence 3667788999999999875 77888888765 76 89999999987666554 4542 12221111111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+-...- ...++.+.+.|+|||++++..
T Consensus 232 ~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 232 DGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEec
Confidence 11369999864222 245777888999999987654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.026 Score=48.70 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=64.4
Q ss_pred HHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC---Cc---
Q 022864 55 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---FE--- 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~--- 126 (291)
+.+.....++.+||-.|| |.|..+..+++.. +++|+++|.+++..+.++ ..|.+ .. .|..+ ..
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~-~~---~d~~~~~~~~~~~ 207 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFD-AA---FNYKTVNSLEEAL 207 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS-EE---EETTSCSCHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----hcCCc-EE---EecCCHHHHHHHH
Confidence 334556788999999998 5677777777665 889999999988766552 23432 11 23322 10
Q ss_pred ---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+.+|+++.+..- ..++...++|++||++++.
T Consensus 208 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 208 KKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEE
Confidence 01468998876432 3477888999999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.011 Score=51.07 Aligned_cols=60 Identities=17% Similarity=-0.011 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH---HHHHHHHHHHHHhC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK---TQKEFIEEQCRVLE 111 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~ 111 (291)
..++..++... ..++..|||.-||+|..+....+. +.+.+|+|+++ ..++.+++++...+
T Consensus 229 ~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 229 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 34455555544 367889999999999999998887 78999999999 99999988876544
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=51.10 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=65.2
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----Cc----
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FE---- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~---- 126 (291)
+.....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.++ +.|.+. ++ |..+ +.
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~--vi--~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAK----VFGATD--FV--NPNDHSEPISQVLS 256 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCCE--EE--CGGGCSSCHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HhCCce--EE--eccccchhHHHHHH
Confidence 445678899999999874 77888888776 77 8999999999776654 345421 22 2221 11
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
..+.+|+|+-...- ...++.+.++|+++ |++++.
T Consensus 257 ~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 257 KMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEE
Confidence 01368998864322 35678888999999 998764
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.023 Score=48.35 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCE---EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----CCccE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCK---ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----ASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~D~ 133 (291)
....+++|+-||.|+++..+.+. |.+ |.++|+++...+..+.+. +...+..+|+.++... ..+|+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCE
Confidence 45679999999999999988876 544 589999999776655543 2456788999887532 36999
Q ss_pred EEEcccccc
Q 022864 134 IYSIEMFEH 142 (291)
Q Consensus 134 i~~~~~l~~ 142 (291)
++...+...
T Consensus 87 l~ggpPCQ~ 95 (295)
T 2qrv_A 87 VIGGSPCND 95 (295)
T ss_dssp EEECCCCGG
T ss_pred EEecCCCcc
Confidence 998765443
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.014 Score=50.83 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--ccCC----ccCCCcc
Q 022864 60 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTF----EMEASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~----~~~~~~D 132 (291)
...++.+||-+|+|. |..+..+++...+.+|+++|.+++..+.++ +.|.+. ++..+ ..+. .....+|
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~----~lGa~~--~i~~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR----EVGADA--AVKSGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH----HTTCSE--EEECSTTHHHHHHHHHGGGCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCE--EEcCCCcHHHHHHHHhCCCCCe
Confidence 567899999999975 778888887654789999999999766654 345432 22111 1110 0113789
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+-.-.- ...++.+.+.|+++|++++..
T Consensus 242 ~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 242 AVFDFVGA------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 88864322 346788899999999988753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.014 Score=51.28 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=65.5
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc--cCCc-----
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADI--STFE----- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~----- 126 (291)
.+.....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++..+.++ +.|.+. ++..+- .++.
T Consensus 184 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 184 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATE--CLNPKDYDKPIYEVICE 256 (373)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHH
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCcE--EEecccccchHHHHHHH
Confidence 3455678899999999874 77788888766 66 8999999998776654 345421 221110 1111
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
..+.+|+|+-.-.- ...++...++|+++ |++++.
T Consensus 257 ~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 257 KTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEE
Confidence 01368998864321 35678888999999 998764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.019 Score=50.58 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=65.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----Cc----
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FE---- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~---- 126 (291)
+.....++.+||-+|+| .|..+..+++.. ++ +|+++|.+++..+.++ +.|.+. ++ |..+ +.
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi--~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK----ALGATD--CL--NPRELDKPVQDVIT 259 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE--EE--CGGGCSSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCcE--EE--ccccccchHHHHHH
Confidence 45567889999999987 477888888776 77 8999999998776654 345421 22 2211 11
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
..+.+|+|+-...- ...++.+.+.|+++ |++++.
T Consensus 260 ~~~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 260 ELTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 01368998864221 35678888999999 998764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.023 Score=48.67 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=62.0
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
+....+++.+||=+|+| .|..+..+++.. +++|++++ +++..+.+++ .|.+ .+..|...+ ...+|+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~d~~~v--~~g~Dvv~ 204 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----RGVR---HLYREPSQV--TQKYFAIF 204 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----HTEE---EEESSGGGC--CSCEEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----cCCC---EEEcCHHHh--CCCccEEE
Confidence 55677899999999996 478888888776 78999999 8887766654 4432 222242222 46789887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
-.-.- ..+....++|+|+|+++..
T Consensus 205 d~~g~-------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 205 DAVNS-------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp CC--------------TTGGGEEEEEEEEEE
T ss_pred ECCCc-------hhHHHHHHHhcCCCEEEEE
Confidence 53221 1235577899999998775
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.051 Score=47.08 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=64.7
Q ss_pred HHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-------c
Q 022864 55 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-------E 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~ 126 (291)
........++.+||=.|+|. |.++..+++......++++|.+++.++.++ +.|.+ ..+...-.+. .
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~----~lGa~--~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK----SFGAM--QTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHG
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH----HcCCe--EEEeCCCCCHHHHHHhhc
Confidence 34556778999999999974 556777777763346789999998666554 45542 2222111111 0
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+.... ....++...++|++||.+++..
T Consensus 226 ~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 226 ELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp GGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECC
T ss_pred ccCCccccccccc------ccchhhhhhheecCCeEEEEEe
Confidence 1145787765422 2456778889999999987743
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.018 Score=50.58 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cc-cCCc------
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DI-STFE------ 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~-~~~~------ 126 (291)
+....+++.+||-+|+|. |.++..+++.. ++ +|+++|.+++..+.+++ .|.+. ++.. +. .++.
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCce--EeccccccccHHHHHHHH
Confidence 455678899999999874 77788888765 66 89999999997776653 45421 2211 10 1111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
..+.+|+|+-...- ...++.+.+.|+++ |++++.
T Consensus 257 ~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 257 TDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp TTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEE
Confidence 01368998864321 34678888999999 998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.028 Score=49.29 Aligned_cols=98 Identities=19% Similarity=0.109 Sum_probs=66.5
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cC
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~ 128 (291)
+....+++.+||-+|+|. |..+..+++.. +++|+++|.+++.++.+++ .|.+ .++..+-.++. ..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGAD--HGINRLEEDWVERVYALTGD 255 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCC--EEEcCCcccHHHHHHHHhCC
Confidence 456678999999999875 77888888776 8899999999987766543 4542 12222211211 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..+|+|+-...- ..++...++|+|+|.+++...
T Consensus 256 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 256 RGADHILEIAGG-------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp CCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEECC
T ss_pred CCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEec
Confidence 379999865431 246667789999999887543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.01 Score=51.39 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=67.5
Q ss_pred HHHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----
Q 022864 53 ELYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---- 126 (291)
..+.+....+++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.+. +..|.+ ..+...-.++.
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~---~~~g~~--~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLV---EELGFD--GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH---HTTCCS--EEEETTTSCHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH---HHcCCC--EEEECCCHHHHHHHH
Confidence 33445667889999999998 4678888888776 889999999998665552 233442 11211111111
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+.+|+|+.+..- ..++.+.+.|+++|++++..
T Consensus 213 ~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 213 RECPKGIDVFFDNVGG-------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp HHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred HhcCCCceEEEECCCc-------chHHHHHHHHhhCCEEEEEe
Confidence 11468988864321 36788889999999987743
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.084 Score=45.65 Aligned_cols=95 Identities=9% Similarity=0.090 Sum_probs=64.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C--
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-- 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-- 128 (291)
......++.+||-+|+| .|..+..+++.. +++|++++.+++.++.++ +.|.+ .. .|..+... .
T Consensus 158 ~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~--~~--~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 158 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAK----ELGAD--LV--VNPLKEDAAKFMKEKV 228 (339)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH----HTTCS--EE--ECTTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HCCCC--EE--ecCCCccHHHHHHHHh
Confidence 34467889999999986 477777777766 789999999998776654 34442 11 23322110 0
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+|+|+..... ...++...+.|+++|++++.
T Consensus 229 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 229 GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 368988865322 34677888999999998764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.77 E-value=0.059 Score=47.34 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----Cc----
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FE---- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~---- 126 (291)
+.....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++..+.++ +.|.+ .++ |..+ +.
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~--~vi--~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAK----EVGAT--ECV--NPQDYKKPIQEVLT 255 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCS--EEE--CGGGCSSCHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCc--eEe--cccccchhHHHHHH
Confidence 445678899999999874 77888888776 77 8999999998776654 34542 122 2211 11
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
..+.+|+|+-...- ...++...++|+++ |++++.
T Consensus 256 ~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 256 EMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHhCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEe
Confidence 01368998864321 34677888999999 998764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.024 Score=49.34 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=63.6
Q ss_pred HHcCCC------CCCEEEEE-cCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--
Q 022864 57 ERSRLE------DGHTVLDV-GCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-- 126 (291)
Q Consensus 57 ~~~~~~------~~~~vLDi-GcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 126 (291)
+..... ++.+||=+ |+| .|..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+ .++.
T Consensus 138 ~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~-~~~~~~ 209 (346)
T 3fbg_A 138 DVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGADI--VLNHK-ESLLNQ 209 (346)
T ss_dssp TTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCSE--EECTT-SCHHHH
T ss_pred HhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcE--EEECC-ccHHHH
Confidence 445566 78999999 454 577888888766 8899999999987766654 45421 11111 1110
Q ss_pred ----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 127 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 127 ----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
....+|+|+-.. .....++.+.++|+++|.++.
T Consensus 210 ~~~~~~~g~Dvv~d~~------g~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 210 FKTQGIELVDYVFCTF------NTDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp HHHHTCCCEEEEEESS------CHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHhCCCCccEEEECC------CchHHHHHHHHHhccCCEEEE
Confidence 114689888642 234567888899999999865
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=51.14 Aligned_cols=100 Identities=12% Similarity=0.119 Sum_probs=66.6
Q ss_pred HHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--ccCCc----
Q 022864 55 YCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTFE---- 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~---- 126 (291)
+.+....+++.+||-+|+| .|..+..+++.. ++ +|+++|.+++.++.++ +.|.+. ++... -.++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAK----KFGVNE--FVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHH----TTTCCE--EECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCcE--EEccccCchhHHHHHH
Confidence 3455677899999999997 477888888766 66 8999999998766554 345421 22111 01110
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
..+.+|+|+-... ....++...+.|++| |++++..
T Consensus 258 ~~~~gg~D~vid~~g------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEECCC------CHHHHHHHHHHhhccCCEEEEEc
Confidence 1146999886422 245678889999997 9987743
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.032 Score=48.38 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=64.6
Q ss_pred HHHHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022864 55 YCERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------ 126 (291)
+.+....+++.+||-+|+| .|..+..+++.. +++|+++|.+++.++.+++ .|.+ ..+...-.++.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~--~~~~~~~~~~~~~~~~~ 208 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAA--YVIDTSTAPLYETVMEL 208 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS--EEEETTTSCHHHHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCc--EEEeCCcccHHHHHHHH
Confidence 3455677899999999987 677888888765 8899999999987776654 3442 12211111111
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+.+..- ... ....++|+++|++++..
T Consensus 209 ~~~~g~Dvvid~~g~------~~~-~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 209 TNGIGADAAIDSIGG------PDG-NELAFSLRPNGHFLTIG 243 (340)
T ss_dssp TTTSCEEEEEESSCH------HHH-HHHHHTEEEEEEEEECC
T ss_pred hCCCCCcEEEECCCC------hhH-HHHHHHhcCCCEEEEEe
Confidence 11479999875332 122 33447999999987743
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.086 Score=46.54 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=50.5
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHH-------CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+.++.+...+|+|+|.|.|.++.-+.+. +...+++.||+|+...+.-++.... .+++.+. .++.+++.
T Consensus 74 ~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~--~~~v~W~-~~l~~lp~-- 148 (387)
T 1zkd_A 74 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--IRNIHWH-DSFEDVPE-- 148 (387)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--CSSEEEE-SSGGGSCC--
T ss_pred HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC--CCCeEEe-CChhhcCC--
Confidence 3455556678999999999998777643 1245899999999876543333222 2246654 33444432
Q ss_pred CccEEEEccccccc
Q 022864 130 SYDRIYSIEMFEHM 143 (291)
Q Consensus 130 ~~D~i~~~~~l~~~ 143 (291)
..-+|+++.+|..+
T Consensus 149 ~~~~viANE~fDAl 162 (387)
T 1zkd_A 149 GPAVILANEYFDVL 162 (387)
T ss_dssp SSEEEEEESSGGGS
T ss_pred CCeEEEeccccccC
Confidence 23466666665444
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.022 Score=49.98 Aligned_cols=97 Identities=14% Similarity=0.275 Sum_probs=65.0
Q ss_pred HHcCCC-----CCCEEEEEc-CC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc--cc----c
Q 022864 57 ERSRLE-----DGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DI----S 123 (291)
Q Consensus 57 ~~~~~~-----~~~~vLDiG-cG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~----~ 123 (291)
+..... ++.+||=+| +| .|..+..+++...+++|++++.+++..+.+++ .|.+. ++.. |+ .
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~--vi~~~~~~~~~v~ 233 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHH--VIDHSKPLAAEVA 233 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSE--EECTTSCHHHHHH
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCCHHHHHH
Confidence 444555 788999998 54 68888888876348899999999987666543 45421 1111 11 1
Q ss_pred CCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 124 TFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 124 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+. ..+.+|+|+-.. .-...++.+.++|+|+|++++.
T Consensus 234 ~~-~~~g~Dvvid~~------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 234 AL-GLGAPAFVFSTT------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp TT-CSCCEEEEEECS------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred Hh-cCCCceEEEECC------CchhhHHHHHHHhcCCCEEEEE
Confidence 11 115789887642 2345678888999999998864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.043 Score=47.58 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC---Cc-----
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---FE----- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~----- 126 (291)
+.....++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.+++ ..|.+ . .+ |..+ +.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~-~-~~--d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFD-D-AF--NYKEESDLTAALKR 220 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCS-E-EE--ETTSCSCSHHHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCc-e-EE--ecCCHHHHHHHHHH
Confidence 4557788999999997 5777888887765 7899999999886665542 23432 1 11 2221 11
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+.+..- ..++...++|+++|++++.
T Consensus 221 ~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 221 CFPNGIDIYFENVGG-------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCcEEEECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 01368988865321 3678888999999998764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.033 Score=48.39 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE----ccc-cCCccCCCcc
Q 022864 60 RLEDGHTVLDVGCGW-GSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV----ADI-STFEMEASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~----~d~-~~~~~~~~~D 132 (291)
.. ++.+||-+|+|. |..+..+++.. |+++|+++|.+++..+.+++ .|.+. ++. .|. ..+.....+|
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY--VSEMKDAESLINKLTDGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE--EECHHHHHHHHHHHHTTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE--EeccccchHHHHHhhcCCCcc
Confidence 66 899999999974 67777777653 47899999999987766654 45421 121 111 1111113699
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+-...- ...++.+.+.|+|+|++++.
T Consensus 241 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 241 IAIDLVGT------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCC------hHHHHHHHHHhhcCCEEEEe
Confidence 99865332 34678888999999998764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.042 Score=47.73 Aligned_cols=95 Identities=15% Similarity=0.291 Sum_probs=64.4
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc---CCcc----
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS---TFEM---- 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~~~---- 127 (291)
......++.+||-+|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+ .. .|.. ++..
T Consensus 163 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~--~~--~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 163 KSANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGE--VF--IDFTKEKDIVGAVLK 233 (347)
T ss_dssp HTTTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCC--EE--EETTTCSCHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCc--eE--EecCccHhHHHHHHH
Confidence 4456788999999998 4677777777665 7899999998886655443 3432 11 1332 1110
Q ss_pred --CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 --EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 --~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+.+|+|+.+... ...++.+.+.|+++|++++.
T Consensus 234 ~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 234 ATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEEC
T ss_pred HhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEE
Confidence 1268988876432 35678889999999998764
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.021 Score=49.37 Aligned_cols=75 Identities=7% Similarity=0.084 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-CCCEE-EEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY-SNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~ 136 (291)
...+++|+.||.|+++..+.+.. +...+ .++|+++...+..+.|... . ++.+|+.++... ..+|+++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEe
Confidence 35699999999999999988652 11356 6999999988777776521 1 567888887533 36899998
Q ss_pred ccccccc
Q 022864 137 IEMFEHM 143 (291)
Q Consensus 137 ~~~l~~~ 143 (291)
..+-..+
T Consensus 83 gpPCQ~f 89 (327)
T 3qv2_A 83 SPPCQPY 89 (327)
T ss_dssp CCCCTTC
T ss_pred cCCccCc
Confidence 8765544
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.028 Score=48.75 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=54.5
Q ss_pred CEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~~~ 139 (291)
.+++|+.||.|+++..+.+..-+ ..|.++|+++...+..+.|.. ...++.+|+.++... ..+|+++...+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence 58999999999999999876211 357899999997776665542 345678899887533 36899998776
Q ss_pred cccc
Q 022864 140 FEHM 143 (291)
Q Consensus 140 l~~~ 143 (291)
-..+
T Consensus 79 CQ~f 82 (333)
T 4h0n_A 79 CQPF 82 (333)
T ss_dssp CCCS
T ss_pred Ccch
Confidence 5443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.053 Score=47.02 Aligned_cols=102 Identities=8% Similarity=-0.006 Sum_probs=63.9
Q ss_pred HHHcCCCCCCEEEEEcCCcc-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCC----ccCC
Q 022864 56 CERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTF----EMEA 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~----~~~~ 129 (291)
++....+++.+||=+|+|.+ .++..+++...+.+|+++|.+++..+.++ ..|.+. +.....|..+. ....
T Consensus 156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KIGADVTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCCHHHHhhhhcCCC
Confidence 34557789999999999864 45666666555789999999998655444 445421 22222222111 1113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|.++.... -...+....+.|+++|.+++..
T Consensus 232 g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 232 GVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp CEEEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CceEEEEecc------CcchhheeheeecCCceEEEEe
Confidence 4666655322 2456788889999999987643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.019 Score=49.89 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=65.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 128 (291)
+....+++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+ .++..+ .++. ..
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~--~v~~~~-~~~~~~v~~~~~ 224 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGAD--IVLPLE-EGWAKAVREATG 224 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCS--EEEESS-TTHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCc--EEecCc-hhHHHHHHHHhC
Confidence 4556788999999997 4688888888776 8899999999987766654 3442 222222 2221 11
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|+|+.+..- ..+..+.++|+++|++++..
T Consensus 225 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 225 GAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 369999865432 24677888999999988743
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.057 Score=47.57 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=64.8
Q ss_pred HHcC-CCCCCEEEEEcCC-cchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc------ccC---
Q 022864 57 ERSR-LEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD------IST--- 124 (291)
Q Consensus 57 ~~~~-~~~~~~vLDiGcG-~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~--- 124 (291)
+... ..++.+||-+|+| .|..+..+++.. + .+|++++.+++..+.++ +.|.+ .++..+ +.+
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~--~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAE----EIGAD--LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHH----HcCCc--EEEeccccCcchHHHHHH
Confidence 4556 7889999999976 477888888776 7 59999999998766654 34542 122211 111
Q ss_pred -CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 125 -FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
......+|+|+-...- ...++...++|+++|+++..
T Consensus 261 ~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 261 DITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 1111369998865322 23567788899999998764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.12 Score=45.21 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=65.5
Q ss_pred HHcCCCCCCEEEEEc--CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022864 57 ERSRLEDGHTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 128 (291)
+....+++.+||-.| +|.|..+..+++.. +++|++++.+++..+.+++ .|.+ ..+..+-.++. ..
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCD--RPINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHCT
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCc--EEEecCChhHHHHHHHhcC
Confidence 445678899999999 45788888888776 8899999999887665543 4442 12221111110 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|+|+.+..- ..++.+.++|+++|.+++..
T Consensus 230 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 230 EGVDVVYESVGG-------AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp TCEEEEEECSCT-------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCCH-------HHHHHHHHHHhcCCEEEEEe
Confidence 468998865331 46778889999999887643
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.065 Score=46.52 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----c--cC
Q 022864 57 ERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----E--ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~--~~ 128 (291)
......++.+||-.|+| .|..+..+++...+++|+++|.+++..+.+++ .|.+ ..+...+ .+. . ..
T Consensus 164 ~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~-~~~~~~~~~~~~ 237 (347)
T 1jvb_A 164 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD-YVINASM-QDPLAEIRRITE 237 (347)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS-EEEETTT-SCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-EEecCCC-ccHHHHHHHHhc
Confidence 44677889999999997 55666666655336899999999987766643 3432 1111111 111 0 11
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+.+|+|+.+..- ...++.+.+.|+|+|++++.
T Consensus 238 ~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 238 SKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEEC
T ss_pred CCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 368988865332 34677788999999998763
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.094 Score=45.21 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cCC
Q 022864 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------MEA 129 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~ 129 (291)
....++.+||-+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+ ..+..+-.++. ...
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~--~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKE----YGAE--YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHTTTS
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc--EEEeCCCchHHHHHHHHhCCC
Confidence 46788999999994 4677888888776 8899999999987665543 4432 12221111111 124
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+.+..- ..++.+.++|+|+|++++..
T Consensus 217 g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 217 GVDASFDSVGK-------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence 69998865432 35677788999999987743
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.15 Score=43.71 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=62.9
Q ss_pred HcCCCCCCEEEEEc--CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---------
Q 022864 58 RSRLEDGHTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------- 126 (291)
Q Consensus 58 ~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------- 126 (291)
.....++.+||-.| +|.|..+..+++.. +++|++++.+++..+.+++ .|.+ . .+ |..+..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~g~~-~-~~--~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW-Q-VI--NYREEDLVERLKEIT 205 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS-E-EE--ETTTSCHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-E-EE--ECCCccHHHHHHHHh
Confidence 45677899999999 35677777777655 7899999999887666654 3432 1 11 222211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+++.+.. ...++.+.++|+++|++++..
T Consensus 206 ~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 206 GGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp TTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred CCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence 1136899987643 235677889999999987643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.28 Score=42.62 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=63.6
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 126 (291)
+.....++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.++ ..|.+ ..+ |..+..
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~~ga~--~~~--d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAH--EVF--NHREVNYIDKIKKY 234 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS--EEE--ETTSTTHHHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHH----HcCCC--EEE--eCCCchHHHHHHHH
Confidence 3456788999999997 5677777777765 889999999998766443 34442 111 222211
Q ss_pred c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. ...+|+|+.+..- ..+....++|+++|++++..
T Consensus 235 ~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 235 VGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence 1 1368998875431 24677789999999987643
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.055 Score=47.21 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHcCCCCC------CEEEEEcCC-cchHH-HHHH-HHCCCCE-EEEEcCCHH---HHHHHHHHHHHhCCCCeEEEEcccc
Q 022864 57 ERSRLEDG------HTVLDVGCG-WGSLS-LYIA-QKYSNCK-ITGICNSKT---QKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 57 ~~~~~~~~------~~vLDiGcG-~G~~~-~~la-~~~~~~~-v~~vD~s~~---~~~~a~~~~~~~~~~~v~~~~~d~~ 123 (291)
+....+++ .+||-+|+| .|.++ ..++ +.. +++ |++++.+++ ..+.++ +.|. +.+ |..
T Consensus 160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~----~lGa---~~v--~~~ 229 (357)
T 2b5w_A 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIE----ELDA---TYV--DSR 229 (357)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHH----HTTC---EEE--ETT
T ss_pred HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHH----HcCC---ccc--CCC
Confidence 34455678 999999986 46777 7777 655 776 999999887 666554 3444 222 322
Q ss_pred CCcc------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 124 TFEM------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 124 ~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+... .+.+|+|+-...- ...++.+.++|+++|+++..
T Consensus 230 ~~~~~~i~~~~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 230 QTPVEDVPDVYEQMDFIYEATGF------PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp TSCGGGHHHHSCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred ccCHHHHHHhCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEE
Confidence 2110 1268888754221 34577888999999998764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.08 Score=45.98 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=64.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------c
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~ 127 (291)
+.... ++.+||-+|+| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. ++..+-.++. .
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~Ga~~--~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----VGADY--VINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----HTCSE--EECTTTSCHHHHHHHHTT
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCE--EECCCCcCHHHHHHHHcC
Confidence 44566 89999999996 377777888766 77 99999999987666543 44421 2211111110 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...+|+|+..... ...++.+.+.|+++|+++...
T Consensus 234 g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 234 GNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 1368998865332 356778889999999987643
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.12 Score=45.00 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=64.7
Q ss_pred HHcCCCCCCEEEEEc--CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------C
Q 022864 57 ERSRLEDGHTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------~ 128 (291)
+....+++.+||-.| +|.|..+..+++.. +++|++++.+++..+.+++ .|.+ ..+..+-.++.. .
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~--~~~~~~~~~~~~~~~~~~~ 233 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACER----LGAK--RGINYRSEDFAAVIKAETG 233 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHHS
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCC--EEEeCCchHHHHHHHHHhC
Confidence 445678899999995 34678888888776 8899999999997766654 3442 122211111110 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|+|+.+..- ..+....+.|+++|.+++..
T Consensus 234 ~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 234 QGVDIILDMIGA-------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp SCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred CCceEEEECCCH-------HHHHHHHHHhccCCEEEEEE
Confidence 468998875432 24667788999999987643
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.088 Score=45.23 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=64.7
Q ss_pred HHcCCCCCCEEEEEc-C-CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------c
Q 022864 57 ERSRLEDGHTVLDVG-C-GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG-c-G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~ 127 (291)
+....+++.+||-.| + |.|..+..+++.. +++|++++.+++.++.+++ .|.+ ..+..+-.++. .
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~ 206 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGAW--ETIDYSHEDVAKRVLELTD 206 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC--EEEeCCCccHHHHHHHHhC
Confidence 334678899999998 3 4678888888765 8899999999987766653 3432 12221111111 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...+|+|+.+..- ..+....++|+++|++++..
T Consensus 207 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 207 GKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp TCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred CCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence 1469998865332 35667889999999987743
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=49.44 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=42.0
Q ss_pred CCeEEEEccccCCc--c-CCCccEEEEcccccccc--------------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 113 QNVEIIVADISTFE--M-EASYDRIYSIEMFEHMK--------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ~~v~~~~~d~~~~~--~-~~~~D~i~~~~~l~~~~--------------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++.++++|+.+.. . +++||+|+++.++.... .+..+++.+.++|||||.+++...
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 36789999998742 2 27899999999885321 134577889999999999988654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.055 Score=47.26 Aligned_cols=99 Identities=18% Similarity=0.128 Sum_probs=63.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc-CCc--cCCCcc
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TFE--MEASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~--~~~~~D 132 (291)
......++.+||-+|+| .|..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+-. ++. ..+.+|
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--v~~~~~~~~~~~~~~~~~D 245 (360)
T 1piw_A 173 VRNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKYFDTFD 245 (360)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHSCSCEE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCCCE--EEcCcCchHHHHHhhcCCC
Confidence 34677889999999986 477777887765 7899999999887766654 45421 2221111 111 014799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+....-.. ...++.+.++|+++|+++..
T Consensus 246 ~vid~~g~~~----~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 246 LIVVCASSLT----DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEECCSCST----TCCTTTGGGGEEEEEEEEEC
T ss_pred EEEECCCCCc----HHHHHHHHHHhcCCCEEEEe
Confidence 9986543200 12345567889999998764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.11 Score=44.52 Aligned_cols=97 Identities=11% Similarity=0.196 Sum_probs=63.0
Q ss_pred HHcCCCCCC-EEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCc
Q 022864 57 ERSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASY 131 (291)
Q Consensus 57 ~~~~~~~~~-~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 131 (291)
.+....++. +||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+. .+-..+..... ....+
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~~~~ 212 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGANR-ILSRDEFAESRPLEKQLW 212 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCSE-EEEGGGSSCCCSSCCCCE
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCE-EEecCCHHHHHhhcCCCc
Confidence 344455422 4999997 4788899999876 8899999999998777654 45421 11112211111 11568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+-.- . ...++.+.++|+|+|+++..
T Consensus 213 d~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 213 AGAIDTV-----G--DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp EEEEESS-----C--HHHHHHHHHTEEEEEEEEEC
T ss_pred cEEEECC-----C--cHHHHHHHHHHhcCCEEEEE
Confidence 8876532 2 12788899999999998774
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.13 Score=44.45 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------c
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~ 127 (291)
+.....++.+||-+|+ |.|..+..+++.. +++|+++ .+++.++.++ +.|.+ .+. +-.++. .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~----~lGa~---~i~-~~~~~~~~~~~~~~ 213 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVR----DLGAT---PID-ASREPEDYAAEHTA 213 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHH----HHTSE---EEE-TTSCHHHHHHHHHT
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHH----HcCCC---Eec-cCCCHHHHHHHHhc
Confidence 5567789999999994 4688888888776 8899999 8888665554 34542 222 222211 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...+|+|+-+.. ...+....++|+++|.+++.
T Consensus 214 ~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 214 GQGFDLVYDTLG-------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TSCEEEEEESSC-------THHHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-------cHHHHHHHHHHhcCCeEEEE
Confidence 146998886432 14677788899999998763
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.29 Score=43.37 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cCCC
Q 022864 60 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------MEAS 130 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~~ 130 (291)
...++.+||=+|+|. |..+..+++.. ++ +|+++|.+++..+.+++ .|.+ .++..+-.++. ....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAKE----LGAD--HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCS--EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCC--EEEcCCCCCHHHHHHHHhCCCC
Confidence 567899999999874 77888888776 77 99999999987766654 4542 12211111111 1146
Q ss_pred ccEEEEcccccccccHHHHHHHHH----hccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKIS----KWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~----~~LkpgG~l~~~~ 167 (291)
+|+|+-.-. .....+..+. +.++++|++++..
T Consensus 283 ~D~vid~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 283 AKLFLEATG-----VPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CSEEEECSS-----CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCEEEECCC-----CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 999885422 2222334444 4459999988743
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.14 Score=44.23 Aligned_cols=92 Identities=11% Similarity=0.158 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cC
Q 022864 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------ME 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~ 128 (291)
....++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+. .+ |..+.. ..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~--~~--d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADE--TV--NYTHPDWPKEVRRLTG 232 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSE--EE--ETTSTTHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCE--EE--cCCcccHHHHHHHHhC
Confidence 36678999999998 5788888888766 7899999999987776643 34421 12 222211 11
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+|+|+.+.. . ..++.+.+.|+++|++++.
T Consensus 233 ~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 233 GKGADKVVDHTG-A------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-H------HHHHHHHHhhccCCEEEEE
Confidence 36899987643 1 2466778889999988763
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.22 Score=42.78 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=63.6
Q ss_pred HcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---------
Q 022864 58 RSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------- 126 (291)
Q Consensus 58 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------- 126 (291)
.....++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+ . .+ |..+..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~g~~-~-~~--d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK----LGCH-H-TI--NYSTQDFAEVVREIT 210 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS-E-EE--ETTTSCHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC-E-EE--ECCCHHHHHHHHHHh
Confidence 456778999999995 5777777777765 7899999999987666543 3432 1 11 222211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+.+..- ..++.+.++|+++|+++...
T Consensus 211 ~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 211 GGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp TTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred CCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence 11368998865432 34677889999999887643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.15 Score=44.29 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=62.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-------cc
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-------EM 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~~ 127 (291)
+.....++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+ . .+..+-.+. ..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~-~-~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEK----LGAA-A-GFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCS-E-EEETTTSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCc-E-EEecCChHHHHHHHHHhc
Confidence 4456788999999984 5677777777765 8899999999987766633 3432 1 111111111 01
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...+|+|+.+..- ..+....++|+++|.+++.
T Consensus 229 ~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 229 GAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEEECCCc-------hHHHHHHHhccCCCEEEEE
Confidence 1368998876432 1356677889999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.28 Score=36.35 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCEEEEEcCCc-chH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEE
Q 022864 64 GHTVLDVGCGW-GSL-SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~-G~~-~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~i~~ 136 (291)
..+|+=+|||. |.. +..|.+. +.+|+++|.+++.++.+++ . .+.++.+|..+... . ..+|+|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 35889999874 332 3333332 7899999999997665543 2 46778899876421 1 57898887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...-. .....+-...+.+.|+..++..
T Consensus 78 ~~~~~---~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 78 TIPNG---YEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp CCSCH---HHHHHHHHHHHHHCSSSEEEEE
T ss_pred ECCCh---HHHHHHHHHHHHHCCCCeEEEE
Confidence 53221 1122233345667788776553
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.057 Score=47.16 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=61.7
Q ss_pred HHHcCCC-CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cCCCcc
Q 022864 56 CERSRLE-DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYD 132 (291)
Q Consensus 56 ~~~~~~~-~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D 132 (291)
+...... ++.+||-+|+| .|..+..+++.. +++|++++.+++..+.+++ +.|.+.+ +...+..... ..+.+|
T Consensus 172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~~v-i~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQ---DLGADDY-VIGSDQAKMSELADSLD 246 (357)
T ss_dssp HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHT---TSCCSCE-EETTCHHHHHHSTTTEE
T ss_pred HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH---HcCCcee-eccccHHHHHHhcCCCC
Confidence 3445667 89999999987 466777777765 7899999999876554431 3444321 1111111110 114689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+-.-.-. ..++...++|+|+|+++..
T Consensus 247 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 247 YVIDTVPVH------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEECCCSC------CCSHHHHTTEEEEEEEEEC
T ss_pred EEEECCCCh------HHHHHHHHHhccCCEEEEe
Confidence 888643221 1245567899999998763
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.4 Score=41.57 Aligned_cols=97 Identities=18% Similarity=0.316 Sum_probs=64.3
Q ss_pred HHHHcCCCCC--CEEEEEcC--CcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022864 55 YCERSRLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 55 ~~~~~~~~~~--~~vLDiGc--G~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 126 (291)
+.+.....++ .+||-.|+ |.|..+..+++.. ++ +|++++.+++..+.+++ ..|.+ .. .|..+..
T Consensus 150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~---~~g~~--~~--~d~~~~~~~~ 221 (357)
T 2zb4_A 150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTS---ELGFD--AA--INYKKDNVAE 221 (357)
T ss_dssp HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH---TSCCS--EE--EETTTSCHHH
T ss_pred HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHH---HcCCc--eE--EecCchHHHH
Confidence 3356677888 99999997 4667777777665 77 99999999876555443 13432 11 2222211
Q ss_pred -----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 -----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+.+|+++.+.. ...++.+.++|+++|++++.
T Consensus 222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEE
Confidence 0125898886543 25678888999999998764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.8 Score=37.69 Aligned_cols=104 Identities=11% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCCEEEEEcCC--cch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---------
Q 022864 63 DGHTVLDVGCG--WGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG--~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------- 128 (291)
.++++|=.|++ .|. ++..|++. +++|+.++.+....+.+.+.....+..++.++.+|+.+...-
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 46789988876 232 45555555 889999998877666665555544434689999999885310
Q ss_pred --CCccEEEEcccccc----------c--ccH-----------HHHHHHHHhccccCeeEEEEee
Q 022864 129 --ASYDRIYSIEMFEH----------M--KNY-----------QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 --~~~D~i~~~~~l~~----------~--~~~-----------~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..|+++.+..+.. . .+. ..+++.+...++++|.++....
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 47899988764432 1 111 1255667778888888776543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.05 E-value=0.1 Score=44.24 Aligned_cols=91 Identities=9% Similarity=0.046 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cCCccC-CCccEEEE
Q 022864 61 LEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFEME-ASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~-~~~D~i~~ 136 (291)
.+++.+||-+|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+. .+..+- .++... ..+|+|+.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~--~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAEE--AATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCSE--EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCE--EEECCcchhHHHHhcCceEEEE
Confidence 778999999997 4677888888776 7899999999887666543 44421 121110 111111 56898886
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..- ..++...++|+++|+++..
T Consensus 196 -~g~-------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 -VRG-------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -CSC-------TTHHHHHTTEEEEEEEEEC
T ss_pred -CCH-------HHHHHHHHhhccCCEEEEE
Confidence 321 2467788999999988763
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.32 Score=42.74 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCccCCCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.+.+||.++.+.|.++..++.. .++.+.=|--....++.|...++++ ++++... ... .+..||+|+...+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~~~~~~~v~~~lp- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--YPQQPGVVLIKVP- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--CCSSCSEEEEECC-
T ss_pred CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--cccCCCEEEEEcC-
Confidence 4568999999999999888754 3344433555556677888888884 3565422 222 2368999888544
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.........+..+...|+||+.+++..-.
T Consensus 110 k~~~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 110 KTLALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp SCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 23345677888999999999998775543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.17 Score=44.22 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCH---HHHHHHHHHHHHhCCCCeEEEEccccC-Ccc-----CCCccE
Q 022864 64 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSK---TQKEFIEEQCRVLELQNVEIIVADIST-FEM-----EASYDR 133 (291)
Q Consensus 64 ~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~-----~~~~D~ 133 (291)
+.+||-+|+| .|..+..+++.. +++|++++.++ +..+.++ ..|. +.+ | .+ +.. ...+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~----~~ga---~~v--~-~~~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIE----ETKT---NYY--N-SSNGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHH----HHTC---EEE--E-CTTCSHHHHHHHCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHH----HhCC---cee--c-hHHHHHHHHHhCCCCCE
Confidence 8999999985 355666666655 78999999987 6555443 3444 222 2 22 110 146899
Q ss_pred EEEcccccccccHHHHH-HHHHhccccCeeEEEE
Q 022864 134 IYSIEMFEHMKNYQNLL-KKISKWMKEDTLLFVH 166 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~~~ 166 (291)
|+...... ..+ +.+.+.|+++|.+++.
T Consensus 250 vid~~g~~------~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 250 IIDATGAD------VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEECCCCC------THHHHHHGGGEEEEEEEEEC
T ss_pred EEECCCCh------HHHHHHHHHHHhcCCEEEEE
Confidence 88754321 245 7788999999998764
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.014 Score=50.69 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=61.4
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cCC
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEA 129 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~ 129 (291)
.... ++.+||-+|+| .|..+..+++.. ++ +|++++.+++.++.+++. .+ .++..+-.++. ...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-----a~--~v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-----AD--RLVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-----CS--EEECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-----HH--hccCcCccCHHHHHHHhcCC
Confidence 5566 89999999986 377778888766 77 899999998866655432 11 11111101110 023
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+....- ...++...+.|+++|+++..
T Consensus 231 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 231 GVEVLLEFSGN------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp CEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 68988865321 34577888999999988764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.49 Score=40.40 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEEc-CC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-CccC-CCcc
Q 022864 57 ERSRLEDGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEME-ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~-~~~D 132 (291)
+.....++.+||=+| +| .|..+..+++.. +++|++++ +++..+.+ ++.|.+. .+..+-.+ +... ..+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~----~~lGa~~--~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFL----KALGAEQ--CINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHH----HHHTCSE--EEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHH----HHcCCCE--EEeCCCcchhhhhccCCC
Confidence 667788999999996 54 688888888876 88999997 45434443 4456532 22221111 1111 5689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+-.-. -. .+....++|+++|+++..
T Consensus 218 ~v~d~~g------~~-~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 218 AVIDLVG------GD-VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEESSC------HH-HHHHHGGGEEEEEEEEEC
T ss_pred EEEECCC------cH-HHHHHHHhccCCCEEEEe
Confidence 8876422 12 237788999999998763
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.15 Score=44.57 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=61.0
Q ss_pred HHcCCC-CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCc-cCCCcc
Q 022864 57 ERSRLE-DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE-MEASYD 132 (291)
Q Consensus 57 ~~~~~~-~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~-~~~~~D 132 (291)
...... ++.+||-+|+| .|..+..+++.. +++|++++.+++..+.+++ ..|.+ .++.. +..... ..+.+|
T Consensus 180 ~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~--~v~~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 180 KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALK---NFGAD--SFLVSRDQEQMQAAAGTLD 253 (366)
T ss_dssp HHTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHH---TSCCS--EEEETTCHHHHHHTTTCEE
T ss_pred HhcCcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---hcCCc--eEEeccCHHHHHHhhCCCC
Confidence 445666 89999999986 366777777766 7899999999886655442 33432 12211 110111 114689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+....... .++...+.|+++|+++..
T Consensus 254 ~vid~~g~~~------~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 254 GIIDTVSAVH------PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EEEECCSSCC------CSHHHHHHEEEEEEEEEC
T ss_pred EEEECCCcHH------HHHHHHHHHhcCCEEEEE
Confidence 9886543211 234566788999998764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.51 E-value=1 Score=37.06 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=55.0
Q ss_pred CCCEEEEEcCC----cch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022864 63 DGHTVLDVGCG----WGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG----~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 127 (291)
.++++|=-|++ -|. .+..|++. |++|+.++.+++..+.+.+..++.+-.++.++.+|+.+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 47889988853 332 45566655 89999999999888877777766554578899999987421
Q ss_pred C-CCccEEEEccc
Q 022864 128 E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ~-~~~D~i~~~~~ 139 (291)
. ++.|+++.+..
T Consensus 83 ~~G~iD~lvnnAg 95 (256)
T 4fs3_A 83 DVGNIDGVYHSIA 95 (256)
T ss_dssp HHCCCSEEEECCC
T ss_pred HhCCCCEEEeccc
Confidence 1 67999988754
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.053 Score=46.64 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred HcCCCCCC-EEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cC-C-c-cCCC
Q 022864 58 RSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-ST-F-E-MEAS 130 (291)
Q Consensus 58 ~~~~~~~~-~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~-~-~-~~~~ 130 (291)
+....++. +||-+|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+.+ +-..+. .+ . . ....
T Consensus 143 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 143 EHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEV-LAREDVMAERIRPLDKQR 216 (328)
T ss_dssp HTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEE-EECC---------CCSCC
T ss_pred hcCCCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----cCCcEE-EecCCcHHHHHHHhcCCc
Confidence 45667775 8999997 5788888888776 7899999999887666543 454221 111111 11 0 0 1146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+-...- ..++...++|+++|++++.
T Consensus 217 ~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 217 WAAAVDPVGG-------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEEEECSTT-------TTHHHHHHTEEEEEEEEEC
T ss_pred ccEEEECCcH-------HHHHHHHHhhccCCEEEEE
Confidence 8988764321 2467778899999998764
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.24 Score=37.49 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
+|+..++..++.....+| -|||+|-|.|..=..|.+.+|+.+|+++|-.-.. ....-.+.-.++.+|+.+..
T Consensus 25 aQR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~-------hp~~~P~~e~~ilGdi~~tL 96 (174)
T 3iht_A 25 SQRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS-------HPDSTPPEAQLILGDIRETL 96 (174)
T ss_dssp HHHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC-------CGGGCCCGGGEEESCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc-------CCCCCCchHheecccHHHHH
Confidence 445556667776665555 8999999999999999999999999999942211 00011122357778777642
Q ss_pred c------CCCccEEEEcccccccc-c---HHHHHHHHHhccccCeeEEEEee
Q 022864 127 M------EASYDRIYSIEMFEHMK-N---YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~------~~~~D~i~~~~~l~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. ..+.-++.+..-.+.-. | ...+-.-+..+|.|||.++-..+
T Consensus 97 ~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p 148 (174)
T 3iht_A 97 PATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDR 148 (174)
T ss_dssp HHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred HHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 1 12333333332222111 1 12233446788999999876444
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.2 Score=45.30 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----------
Q 022864 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----------- 125 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----------- 125 (291)
...+++.+||=+|+ |.|..+..+++.. ++++++++.+++.++.+++ .|.+. ++...-.++
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRA----MGAEA--IIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCCE--EEETTTTTCCSEEETTEECH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHh----hCCcE--EEecCcCcccccccccccch
Confidence 46788999999997 4688888888776 8899999998887666643 45421 121111110
Q ss_pred -------------ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 126 -------------EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 126 -------------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.....+|+|+-... . ..+....++|+++|.+++.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG-----R--ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC-----H--HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC-----c--hhHHHHHHHhhCCcEEEEE
Confidence 01147898876422 1 4677888899999998774
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.075 Score=48.38 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=54.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------------
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------------- 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------------- 127 (291)
..+++|+-||.|+++.-+.+. |. .|.++|+++...+..+.+... .+...++.+|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence 469999999999999998765 54 478999999977666655421 1234567788876541
Q ss_pred --C-CCccEEEEccccccc
Q 022864 128 --E-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 128 --~-~~~D~i~~~~~l~~~ 143 (291)
. ..+|+++...+...+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC
T ss_pred hhcCCCCCEEEecCCCcch
Confidence 1 468999987765544
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.094 Score=45.95 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=56.7
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
++.+|+=+|+| .|..+..++... |++|+++|.+++..+.+.+.... .+.....+..++... ..+|+|+.....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc----eeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 35899999996 344445555555 77999999999877666543321 232222222221111 468999876543
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.....+.-+.+...+.|+|||+++..
T Consensus 241 ~~~~~~~li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 241 PGRRAPILVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred CCCCCCeecCHHHHhhCCCCCEEEEE
Confidence 22111111134456788999987653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.21 E-value=1.1 Score=37.24 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC------------HHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
.++++|=-|++.|. ++..|++. +++|+.+|.+ ...++.+.......+. ++.++.+|+.+...
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHH
Confidence 46788888876552 44445544 8899999987 6666655555555543 78999999988531
Q ss_pred C-----------CCccEEEEccccccc------ccH-----------HHHHHHHHhccccCeeEEEEe
Q 022864 128 E-----------ASYDRIYSIEMFEHM------KNY-----------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-----------~~~D~i~~~~~l~~~------~~~-----------~~~l~~~~~~LkpgG~l~~~~ 167 (291)
- ++.|+++.+...... .++ -.+.+.+.+.++.+|.++...
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 0 478999987654221 111 235566777777888776543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.76 Score=38.81 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----------
Q 022864 62 EDGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------- 128 (291)
..+++||=.|++.|. ++..|+++ +.+|++++.++..++.+.+.....+. ++.++.+|+.+...-
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHh
Confidence 357789988877552 44444544 88999999999988877777666554 789999999885310
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 106 ~g~id~lvnnAg~ 118 (301)
T 3tjr_A 106 LGGVDVVFSNAGI 118 (301)
T ss_dssp HSSCSEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 378999987654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.79 Score=38.45 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-cc---------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM---------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~---------~- 128 (291)
.+++||=.|++.|. ++..|+++ +++|++++.++...+.+.+.....+..++.++.+|+.+. .. .
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSN--GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 46678877766442 34444443 889999999998777766666555545799999999886 21 0
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
+..|++|.+...
T Consensus 89 ~g~iD~lv~nAg~ 101 (311)
T 3o26_A 89 FGKLDILVNNAGV 101 (311)
T ss_dssp HSSCCEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 478999987754
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.97 Score=37.17 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCCEEEEEcC-Ccch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGC-GWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGc-G~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|+ |.|. ++..|+++ +++|+.++.++...+...+.....+..++.++.+|+.+... .
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4678888887 5442 45555655 88999999999887777766655544579999999988531 0
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 478999987654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.095 Score=46.22 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
++.+|+=+|+|. |......+... |++|+++|.+++..+.+.+. .+. .+.....+..++... ..+|+|+.....
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~---~g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAE---FCG-RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT-SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHh---cCC-eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 578999999963 44444444445 78999999999866555432 232 222221111111111 467999874322
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEe
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.......-+.+...+.+||||+++...
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 111111112455677899999876543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.43 Score=42.65 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=35.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHC----C-CCEEEEEcCCHHHHHHHHHHHHH
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY----S-NCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~----~-~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..+|+|+|.|.|.++.-+.+.. + ..+++.||+|+...+.-+++...
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4799999999999877775432 1 24899999999987776666654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.11 Score=49.72 Aligned_cols=104 Identities=9% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC-------CC-----CEEEEEcC---CHHHHHHHHH-----------HHHHh-----
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY-------SN-----CKITGICN---SKTQKEFIEE-----------QCRVL----- 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~-------~~-----~~v~~vD~---s~~~~~~a~~-----------~~~~~----- 110 (291)
.+..+|+|+|.|+|.....+.+.+ |. .+++.+|. +.+.+..+.. .....
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 345799999999999877765532 21 57899998 4444433221 11111
Q ss_pred CC------C---CeEEEEccccCCcc------CCCccEEEEccccccc-cc--HHHHHHHHHhccccCeeEEE
Q 022864 111 EL------Q---NVEIIVADISTFEM------EASYDRIYSIEMFEHM-KN--YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 111 ~~------~---~v~~~~~d~~~~~~------~~~~D~i~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~~ 165 (291)
|+ + .+++..+|+.+... ...+|.++....-... ++ ...++..+.++++|||.+..
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 10 1 36677888866322 2579999986532111 11 26789999999999998764
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=2.1 Score=35.88 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCcc-----hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------
Q 022864 62 EDGHTVLDVGCGWG-----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------- 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G-----~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------- 127 (291)
..++++|=.|++.| .++..|++. +++|+.++.++...+.+.+.....+ ++.++.+|+.+...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHH
Confidence 35779999997633 245555555 8899999998765555555444443 68889999988531
Q ss_pred --CCCccEEEEcccccc----------c--cc-----------HHHHHHHHHhccccCeeEEEEee
Q 022864 128 --EASYDRIYSIEMFEH----------M--KN-----------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 --~~~~D~i~~~~~l~~----------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-+..|++|.+..+.. . .+ .-.+.+.+.+.++.+|.++....
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 047899998765432 1 11 12355666677777888776543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.13 Score=45.19 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
++.+|+=+|+| .|......+... |++|+++|.+++..+.+.+. .+. .+.....+..++... ..+|+|+.....
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~---~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDV---FGG-RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT-SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHh---cCc-eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 46899999985 233344444444 78999999999866554332 232 222222222221111 468999876544
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.......-+.+...+.++|||.++..
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEEC
T ss_pred CccccchhHHHHHHHhhcCCCEEEEE
Confidence 21111111245677888999987653
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.2 Score=43.04 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=62.1
Q ss_pred HcCCCCCC-EEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cC-Cc--cCCC
Q 022864 58 RSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-ST-FE--MEAS 130 (291)
Q Consensus 58 ~~~~~~~~-~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~-~~--~~~~ 130 (291)
+....++. +||-+|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+.+ +-..+. .+ .. ....
T Consensus 144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~v-~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGASEV-ISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp HTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCSEE-EEHHHHCSSCCCSSCCCC
T ss_pred hcCcCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE-EECCCchHHHHHHhhcCC
Confidence 34567775 8999997 4677888888765 7899999998887666543 454221 111111 11 11 1146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+-... . ..+....++|+++|++++.
T Consensus 218 ~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 218 WQGAVDPVG-----G--KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEEESCC-----T--HHHHHHHTTEEEEEEEEEC
T ss_pred ccEEEECCc-----H--HHHHHHHHhhcCCCEEEEE
Confidence 888875432 2 3577888999999998764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.079 Score=46.64 Aligned_cols=95 Identities=14% Similarity=0.151 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--------------------
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-------------------- 121 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-------------------- 121 (291)
++.+|+=+|+|. |..+..++... |++|+++|.++...+.+.+ .|. +++..+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~----lGa---~~~~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRS----VGA---QWLDLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHH----TTC---EECCCC-------------CHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccchhhhhHHHHhh
Confidence 678999999984 55555555555 8899999999986655543 232 222211
Q ss_pred -ccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 122 -ISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 122 -~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...+... ...|+|+..-....-+.+.-+-+.+.+.+|||++++=
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence 0011111 6789999753221111111123567888999887654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.092 Score=45.24 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=43.1
Q ss_pred CeEEEEccccCC-c-c-CCCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 114 NVEIIVADISTF-E-M-EASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 114 ~v~~~~~d~~~~-~-~-~~~~D~i~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+..++++|..+. . . .+++|+|++..++... ......+..+.++|+|||.+++....
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 578889998763 2 2 3789999999987543 23677889999999999999886543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.94 Score=39.23 Aligned_cols=97 Identities=10% Similarity=0.200 Sum_probs=56.2
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEc------cccCCccC-
Q 022864 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVA------DISTFEME- 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~------d~~~~~~~- 128 (291)
....++.+||=+|+ |.|.++..+++.. +++++++ +.++.. +...+.+++.|.+. ++.. ++.+....
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~-~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~~~~~ 238 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDI-QKLSDRLKSLGAEH--VITEEELRRPEMKNFFKDM 238 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCH-HHHHHHHHHTTCSE--EEEHHHHHSGGGGGTTSSS
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccch-HHHHHHHHhcCCcE--EEecCcchHHHHHHHHhCC
Confidence 46788999999997 4788888888876 7766554 443321 11123344556532 2221 11111111
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+|+|+-.-. . .. .....++|+++|++++.
T Consensus 239 ~~~Dvvid~~g-----~-~~-~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 239 PQPRLALNCVG-----G-KS-STELLRQLARGGTMVTY 269 (357)
T ss_dssp CCCSEEEESSC-----H-HH-HHHHHTTSCTTCEEEEC
T ss_pred CCceEEEECCC-----c-HH-HHHHHHhhCCCCEEEEE
Confidence 24898875421 1 12 23567999999998764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=1.6 Score=36.51 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++.+.. ..+...+..+..+. ++.++.+|+.+... .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 34444544 889999998765 33333344444443 78999999988431 0
Q ss_pred -CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+..|+++.+..... + ++ .-.+++.+.+.++.+|.++...
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 47899998753321 1 11 1235666777888888776643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.19 Score=47.75 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-------C---C--CEEEEEcC---CHHHHHHHHH-----------HHHHhCC----
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY-------S---N--CKITGICN---SKTQKEFIEE-----------QCRVLEL---- 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~-------~---~--~~v~~vD~---s~~~~~~a~~-----------~~~~~~~---- 112 (291)
+.-+|||+|-|+|.......+.+ | . .+++++|. +++.+..+.. .......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45699999999998776665432 2 1 46899998 7776663332 1111110
Q ss_pred ----------CCeEEEEccccCCcc------CCCccEEEEccccccc-cc--HHHHHHHHHhccccCeeEEE
Q 022864 113 ----------QNVEIIVADISTFEM------EASYDRIYSIEMFEHM-KN--YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 113 ----------~~v~~~~~d~~~~~~------~~~~D~i~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~~ 165 (291)
-.+++..+|+.+... ...+|+|+....-... ++ ...++..+.++++|||.+..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 024566677765321 2579999986522211 22 26789999999999998765
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.77 Score=37.68 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------- 128 (291)
.+++||=.| |+|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+...-
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 356777666 4565555554432 278999999998776666655555443 688999999874310
Q ss_pred CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+..|+|+.+...... .+ ...+++.+.+.++++|.+++..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 378999876543211 11 1235556667777777766643
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.21 Score=43.77 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCCCCEEEEEc-C-CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEE
Q 022864 61 LEDGHTVLDVG-C-GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiG-c-G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~i 134 (291)
..++.+||=.| + |.|..+..+++.. +++|++++ +++..+.+ ++.|.+. .+..+-.++. .. ..+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~----~~lGa~~--v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELV----RKLGADD--VIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHH----HHTTCSE--EEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHH----HHcCCCE--EEECCchHHHHHHhhcCCCCEE
Confidence 67899999999 3 4688888888776 78999998 66655444 3445421 2211111111 11 468998
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+-...- ....+....++|+++|+++..
T Consensus 253 id~~g~-----~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 253 LDNVGG-----STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EESSCT-----THHHHGGGGBCSSSCCEEEES
T ss_pred EECCCC-----hhhhhHHHHHhhcCCcEEEEe
Confidence 864322 123456677899999998763
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.54 Score=42.17 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=63.3
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-----------
Q 022864 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----------- 124 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~----------- 124 (291)
....++.+||=.|+ |.|..+..+++.. ++++++++.+++.++.++ +.|.+.+ .....|+.+
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccch
Confidence 56788999999997 3677888888776 889999999988766654 3454221 111112100
Q ss_pred --------Cc--cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 125 --------FE--MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 --------~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+. ....+|+|+-+..- ..++...++|+++|.+++.
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEE
Confidence 00 02468998865322 3567788899999998774
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.41 Score=41.85 Aligned_cols=91 Identities=7% Similarity=-0.033 Sum_probs=59.1
Q ss_pred CCCCEEEEEcC-C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cCCCccE
Q 022864 62 EDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGc-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~D~ 133 (291)
.++.+||=+|+ | .|..+..+++.. +++|+++. +++..+.++ +.|.+ .++...-.++. ..+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~--~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAK----SRGAE--EVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCS--EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHH----HcCCc--EEEECCCchHHHHHHHHccCCccE
Confidence 78899999998 3 788999999876 88999885 777655443 45542 22222111111 1245898
Q ss_pred EEEcccccccccHHHHHHHHHhcc-ccCeeEEEE
Q 022864 134 IYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVH 166 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~ 166 (291)
|+-.-.- ...++.+.+.| +++|+++..
T Consensus 235 v~d~~g~------~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 235 ALDCITN------VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEESSCS------HHHHHHHHHHSCTTCEEEEES
T ss_pred EEECCCc------hHHHHHHHHHhhcCCCEEEEE
Confidence 8864221 34567777888 699998764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.93 Score=37.20 Aligned_cols=99 Identities=11% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++.+++.++...+.. + .++.++.+|+.+... .
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 46788888876553 34444544 889999999988765554433 2 268899999988531 1
Q ss_pred CCccEEEEccccccc--------ccH-----------HHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHM--------KNY-----------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~--------~~~-----------~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++.|+++.+...... .+. -.+.+.+.+.++++|.++...
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 478999887643221 111 224556667777788776644
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.94 E-value=1 Score=33.09 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=44.0
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~i~~ 136 (291)
..+|+=+|||. .+..+++.. .+.+|+++|.+++.++.+++ . .+.++.+|..+... . ..+|+|++
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 45899999864 444433321 27899999999987655443 2 35778888877421 1 56898887
Q ss_pred ccc
Q 022864 137 IEM 139 (291)
Q Consensus 137 ~~~ 139 (291)
...
T Consensus 77 ~~~ 79 (141)
T 3llv_A 77 TGS 79 (141)
T ss_dssp CCS
T ss_pred ecC
Confidence 543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=91.87 E-value=1.8 Score=35.65 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcC-CHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++. +....+...+..+..+. ++.++.+|+.+... .
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRL--GAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888776542 34444544 889998775 45555555555555554 78899999988531 0
Q ss_pred -CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++.|+++.+...... .+ .-.+.+.+.+.++++|.+++...
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 478999977644221 11 12355667777888888766543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.76 E-value=1.5 Score=36.28 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 128 (291)
.++++|=-|++.|. .+..|++. |++|..+|.+++.++.+.+.....+. ++.++.+|+.+.. ..
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 47777777776653 44555554 89999999999988888777777665 7888899998742 11
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+.-.
T Consensus 85 G~iDiLVNNAG~ 96 (255)
T 4g81_D 85 IHVDILINNAGI 96 (255)
T ss_dssp CCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 678999987643
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=2.1 Score=35.97 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCc-ch----HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022864 63 DGHTVLDVGCGW-GS----LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~----~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++. .. ++..|++. +++|+.++.++...+.+.+.....+ ++.++.+|+.+...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ--GAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899998753 22 45555554 8899999998876655555555444 46888999988531
Q ss_pred C-CCccEEEEcccccc----------c--cc-----------HHHHHHHHHhccccCeeEEEEee
Q 022864 128 E-ASYDRIYSIEMFEH----------M--KN-----------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~----------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. +..|+++.+..+.. . .+ .-.+.+.+.+.++.+|.++....
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 0 47899998764432 1 11 12355566777777888776543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.72 E-value=1.8 Score=36.31 Aligned_cols=103 Identities=7% Similarity=0.054 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC--HHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS--KTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++.|. ++..|++. +++|+.++.+ ....+...+.....+. ++.++.+|+.+...
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence 46788888876542 34444544 8899999886 3344444444444443 78899999987431
Q ss_pred C-CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEEee
Q 022864 128 E-ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. +..|+++.+..... + ++ .-.+.+.+.+.++++|.++....
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 0 47899998765422 1 11 12355667777888888766543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.12 Score=45.79 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc------------------
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS------------------ 123 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~------------------ 123 (291)
++.+|+=+|+|. |..+..++... |++|+++|.++...+.+.+ .|. +++..+..
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~----~G~---~~~~~~~~~~~d~~~~~~ya~e~s~~ 260 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVAS----LGA---KFIAVEDEEFKAAETAGGYAKEMSGE 260 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHH----TTC---EECCCCC-----------------CH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCC---ceeecccccccccccccchhhhcchh
Confidence 578999999994 55566666665 8899999999986555543 232 22221110
Q ss_pred -------CCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 124 -------TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 124 -------~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.+... ...|+|+.......-+.+.-+-+.+.+.+|||.+++=
T Consensus 261 ~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVD 310 (405)
T 4dio_A 261 YQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVD 310 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEE
T ss_pred hhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEE
Confidence 00001 4689998753222111111123578888999987654
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=4.6 Score=34.70 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-----------------------CCCCeEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-----------------------ELQNVEII 118 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-----------------------~~~~v~~~ 118 (291)
+...|+-||||.-.....+... .++.+++=||. |+.++.=++.+... .-++..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4679999999998888887754 24678999998 66665544444321 02467899
Q ss_pred EccccCCc----------cC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 119 VADISTFE----------ME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 119 ~~d~~~~~----------~~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+|+.+.. .+ ...-++++-.++.++ .....+++.+.+... +|.+++..+.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i 231 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQV 231 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEecc
Confidence 99997731 12 344688888899998 356778888887665 4554444443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.47 E-value=2.4 Score=34.94 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=54.8
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++||=.|| |.++..+++.. .+.+|++++-++....... . .+++++.+|+.++. -..+|+|+.......
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~---~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~ 75 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A---SGAEPLLWPGEEPS-LDGVTHLLISTAPDS 75 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H---TTEEEEESSSSCCC-CTTCCEEEECCCCBT
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h---CCCeEEEecccccc-cCCCCEEEECCCccc
Confidence 68999995 87777776543 3689999999887543322 1 26899999999866 567899998765543
Q ss_pred ccc--HHHHHHHHHh
Q 022864 143 MKN--YQNLLKKISK 155 (291)
Q Consensus 143 ~~~--~~~~l~~~~~ 155 (291)
..+ ...+++.+.+
T Consensus 76 ~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 76 GGDPVLAALGDQIAA 90 (286)
T ss_dssp TBCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHh
Confidence 322 2344444444
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.44 E-value=2.4 Score=35.01 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. |++|+.++.+ ....+...+.....+. ++.++.+|+.+... .
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALE--GAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789988876553 44455544 8899988644 4545545555555443 78899999988531 0
Q ss_pred -CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++.|+++.+...... .+ .-.+++.+.+.|+++|.+++..
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 478999987643221 11 1235566677788888776643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.53 Score=41.96 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCEEEEEcCCc-chH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEE
Q 022864 64 GHTVLDVGCGW-GSL-SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~-G~~-~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~~ 136 (291)
..+|+=+|+|. |.. +..|.+. +..|+++|.+++.++.+++ . .+.++.+|..+.. .. ..+|+|++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~----~---g~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHH----T---TCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHh----C---CCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 45788888863 332 2223322 7899999999998776653 3 3557889998853 12 67898887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
...- ......+....+.+.|+..+++-..
T Consensus 75 ~~~~---~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 75 AIDD---PQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp CCSS---HHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCCC---hHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 5322 1233445556667788877776544
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=3.6 Score=33.76 Aligned_cols=76 Identities=8% Similarity=-0.049 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++.+++..+.+.+.... .+..++.++.+|+.+... .
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 44445544 88999999999887777666655 333358899999988531 0
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 85 ~g~id~lvnnAg~ 97 (265)
T 3lf2_A 85 LGCASILVNNAGQ 97 (265)
T ss_dssp HCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 478999987654
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.42 Score=41.58 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=58.6
Q ss_pred cCCCCC-CEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE------ccccC-Cc--
Q 022864 59 SRLEDG-HTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV------ADIST-FE-- 126 (291)
Q Consensus 59 ~~~~~~-~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~------~d~~~-~~-- 126 (291)
...+++ .+||=+|+ |.|..+..+++.. +++++++..+++..+..++.+++.|.+. ++. .|+.+ +.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEW 238 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeE--EEecCccchHHHHHHHHHH
Confidence 367788 99999986 4678888888776 7888888755543211223334556532 221 11111 00
Q ss_pred ---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+-.-.- .... ...++|+++|+++..
T Consensus 239 t~~~~~g~Dvvid~~G~------~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVGG------KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHTCCEEEEEESSCH------HHHH-HHHHTSCTTCEEEEC
T ss_pred hhccCCCceEEEECCCc------hhHH-HHHHHhccCCEEEEe
Confidence 12468988864221 2233 567999999998764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.28 E-value=2.5 Score=35.95 Aligned_cols=76 Identities=13% Similarity=0.050 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----------- 127 (291)
.+++||=.|++.|. ++..|+++ |.+|++++.++...+.+.+.....+. .++.++.+|+.+...
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46788888876553 34444444 88999999999888777776665554 268899999988531
Q ss_pred CCCccEEEEcccc
Q 022864 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~i~~~~~l 140 (291)
.+..|+++.+...
T Consensus 85 ~g~id~lv~nAg~ 97 (319)
T 3ioy_A 85 FGPVSILCNNAGV 97 (319)
T ss_dssp TCCEEEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 0468999987654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=1.6 Score=37.18 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=56.9
Q ss_pred CCEEEEEcCCc--chHHHHHHHHCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-CccCCCccEEEEcc
Q 022864 64 GHTVLDVGCGW--GSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEMEASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~--G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~i~~~~ 138 (291)
.++|.=||+|. +.++..+.+. +. +|+++|.+++.++.+. +.|. +.-...|..+ .. ...|+|+..-
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~----~~G~--~~~~~~~~~~~~~--~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAV----DLGI--IDEGTTSIAKVED--FSPDFVMLSS 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHH----HTTS--CSEEESCTTGGGG--GCCSEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHH----HCCC--cchhcCCHHHHhh--ccCCEEEEeC
Confidence 46899999884 2345555554 55 9999999998765543 3443 1112234333 21 4679999875
Q ss_pred cccccccHHHHHHHHHhccccCeeEE
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
... ....+++.+...++||.+++
T Consensus 103 p~~---~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 PVR---TFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred CHH---HHHHHHHHHhhccCCCcEEE
Confidence 553 34677888888898887654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.89 Score=41.44 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
..++.+|+=+|+|. |......++.+ +++|+++|.++...+.++ ..|. ++ .++.+.. ...|+|+....
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~----~~Ga---~~--~~l~e~l--~~aDvVi~atg 338 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAM----MEGF---DV--VTVEEAI--GDADIVVTATG 338 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHH----HTTC---EE--CCHHHHG--GGCSEEEECSS
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCC---EE--ecHHHHH--hCCCEEEECCC
Confidence 46789999999973 44444445455 789999999998654443 3443 22 2332221 46899998643
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
-.++-+ ....+.|||||+++...
T Consensus 339 t~~~i~-----~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 339 NKDIIM-----LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp SSCSBC-----HHHHHHSCTTCEEEECS
T ss_pred CHHHHH-----HHHHHhcCCCcEEEEeC
Confidence 322211 24556789999886643
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.2 Score=44.15 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHH
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFI 103 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a 103 (291)
++.+|+=+|+|. |..+..+++.. +++|+++|.++...+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQV 211 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence 688999999984 55555666666 78999999998755444
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.85 E-value=1.1 Score=36.81 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|+++ |++|+.+ +.+....+...+.....+. ++.++.+|+.+... .
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876553 44445544 8899888 6666665555555554443 68899999988531 0
Q ss_pred -CCccEEEEccccc-c------c--cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFE-H------M--KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~-~------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++.|+++.+.... . . ++ .-.+.+.+.+.++++|.++...
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4789999876332 1 1 11 1234556666777777766543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.78 E-value=2.2 Score=35.49 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcC-CHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------- 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++. +++..+...+.....+. ++.++.+|+.+...-
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAAS--GFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--CCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888876552 44445544 889999995 67666665555555554 789999999885311
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 378999987654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.74 E-value=2.5 Score=34.90 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=-|++.|. ++..|++. |++|+.+ ..++...+...+.....+. ++.++.+|+.+... .
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASD--GFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHH--TCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876653 45556666 8888887 4455555555555555543 78899999988531 0
Q ss_pred -CCccEEEEccccccc--------ccH-----------HHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEHM--------KNY-----------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~--------~~~-----------~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++.|+++.+...... .+. -.+++.+.+.++++|.++...
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 478999987644221 111 224556667777788876644
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.57 E-value=3.2 Score=34.24 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~----------- 128 (291)
.++++|=.|++ |.++..+++.+ .+++|++++.++...+...+.....+. .++.++.+|+.+...-
T Consensus 31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45688888765 44444444321 278999999998877666655555553 3578889999875310
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+|+.+...
T Consensus 110 g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 110 SGVDICINNAGL 121 (279)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999987643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.52 E-value=3.7 Score=29.55 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-CCCccEEEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~D~i~~ 136 (291)
+++|+=+|+| ..+..+++.. .+.+|+++|.+++.++...+ .. .+.++.+|..+.. . ...+|+|+.
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EI---DALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HC---SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---hc---CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 4689999886 3333333221 27899999999886544332 11 3456677765431 1 156899888
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
..... .....+..+.+.++++ .+++
T Consensus 76 ~~~~~---~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 76 VTGKE---EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CCSCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred eeCCc---hHHHHHHHHHHHcCCC-EEEE
Confidence 64321 2233444555557775 4444
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.49 E-value=2.9 Score=34.61 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcC-------------CHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 62 EDGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-------------SKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~-------------s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
..++++|=.|++.|. ++..|++. +++|+++|. +++.++...+.....+. ++.++.+|+.+.
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAE--GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDD 89 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence 356788888876553 44455544 889999997 66766666665555553 788999999874
Q ss_pred cc----------C-CCccEEEEcccc
Q 022864 126 EM----------E-ASYDRIYSIEMF 140 (291)
Q Consensus 126 ~~----------~-~~~D~i~~~~~l 140 (291)
.. . ++.|+++.+...
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 31 0 478999987644
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.20 E-value=1.6 Score=35.84 Aligned_cols=76 Identities=20% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcC-CHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------- 128 (291)
.+++||=.|+ +|.++..+++.+ .+.+|++++. ++...+...+.....+. ++.++.+|+.+...-
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4668886665 455555554432 2789999988 77766555555544443 688899999874310
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 98 ~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 98 GGLDFVMSNSGM 109 (274)
T ss_dssp SCEEEEECCCCC
T ss_pred CCCCEEEECCCC
Confidence 378999876543
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.92 Score=44.98 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---------------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--------------- 125 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--------------- 125 (291)
...+++||-||.|+++.-+.+. |. .+.++|+++...+..+.|. ++..++..|+.++
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence 4579999999999999998876 64 5779999999766655543 2455666665321
Q ss_pred --ccCCCccEEEEccccccc
Q 022864 126 --EMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 126 --~~~~~~D~i~~~~~l~~~ 143 (291)
+..+.+|+|+...+-..+
T Consensus 612 ~lp~~~~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGF 631 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTC
T ss_pred hcccCCCeeEEEEcCCCcch
Confidence 112578999987755443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=0.8 Score=34.40 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-CCCccEEE
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~D~i~ 135 (291)
.++.+|+=+|||. |......+... +.+|+++|.+++.++.+++ .. .+.++.+|..+.. . ...+|+|+
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 4678999999864 33322222233 7899999999875433220 11 3456667754421 1 14689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
....- ......+..+.+.+.|...++.
T Consensus 90 ~~~~~---~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 90 AFTND---DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ECSSC---HHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEeCC---cHHHHHHHHHHHHHCCCCeEEE
Confidence 75432 1223333444444555555544
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=89.91 E-value=3.7 Score=34.76 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC------------HHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
.++++|=-|++.|. ++..|++. |++|+++|.+ ++.++...+.....+. ++.++.+|+.+...
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQD--GADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLAS 121 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHH
Confidence 46788877776552 44445544 8899999876 5555555555555554 78999999987431
Q ss_pred ----------C-CCccEEEEcccc
Q 022864 128 ----------E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ----------~-~~~D~i~~~~~l 140 (291)
. ++.|++|.+...
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 0 478999987644
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.86 E-value=3.8 Score=33.81 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcC-------------CHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-------------SKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~-------------s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
.++++|=.|++.|. .+..|++. +++|+++|. +++.++...+.....+. ++.++.+|+.+..
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAE--GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence 46788888876553 44455544 889999997 56666655555555443 7889999998853
Q ss_pred c----------C-CCccEEEEcccc
Q 022864 127 M----------E-ASYDRIYSIEMF 140 (291)
Q Consensus 127 ~----------~-~~~D~i~~~~~l 140 (291)
. . ++.|+++.+...
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 1 0 468999987644
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.2 Score=44.57 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHH
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFI 103 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a 103 (291)
++.+|+=+|+|. |..+..++... |++|+++|.++...+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHH
Confidence 578999999984 55556666666 78999999999865554
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.81 E-value=2.5 Score=34.81 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccCCccC----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~---------- 128 (291)
.++++|=-|++.|. ++..|++. +++|+.++.+++..+.+.+.... .+. ++.++.+|+.+...-
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46688877766542 34444444 88999999998887776665554 343 789999999886410
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 96 ~g~id~lv~nAg~ 108 (266)
T 4egf_A 96 FGGLDVLVNNAGI 108 (266)
T ss_dssp HTSCSEEEEECCC
T ss_pred cCCCCEEEECCCc
Confidence 478999987643
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=89.56 E-value=6.2 Score=33.19 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE-EccccCCccC----CCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFEME----ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~----~~~D~i 134 (291)
.++++||=.|+ +|.++..+++.+ .+.+|++++.++...+...+........++.++ .+|+.+...- ..+|+|
T Consensus 9 ~~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 87 (342)
T 1y1p_A 9 PEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp CTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence 45678998875 455555554432 278999999887765544433322211368888 7898874321 468999
Q ss_pred EEccccc
Q 022864 135 YSIEMFE 141 (291)
Q Consensus 135 ~~~~~l~ 141 (291)
+.+....
T Consensus 88 ih~A~~~ 94 (342)
T 1y1p_A 88 AHIASVV 94 (342)
T ss_dssp EECCCCC
T ss_pred EEeCCCC
Confidence 9876543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.34 E-value=3.2 Score=34.57 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++.+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+ +.+. ++..+.+|+.+... .
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~---~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIA---EIGG-GAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---HHCT-TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH---HcCC-CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57788888877663 45555555 8999999999987665543 3343 67788999987531 1
Q ss_pred CCccEEEEccccccc--------ccH-----------HHHHHHHHhccccCeeEEEE
Q 022864 129 ASYDRIYSIEMFEHM--------KNY-----------QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~--------~~~-----------~~~l~~~~~~LkpgG~l~~~ 166 (291)
++.|+++.+.-.... +++ -.+.+.+.+.|+.+|.++..
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 678999887643221 111 23455667778888876554
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=89.16 E-value=2.2 Score=41.24 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC----CC-CEEEEEcCCHHHHHHHHHHH
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY----SN-CKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~----~~-~~v~~vD~s~~~~~~a~~~~ 107 (291)
....+|+||-||.|+++.-+.+.. .. ..+.++|+++.+++.-+.|.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 345799999999999988886541 00 25679999999877766653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.01 E-value=2.3 Score=31.60 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=55.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIY 135 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~ 135 (291)
..+|+=+|+ |..+..+++.. .+.+|+++|.+ ++..+...+. .. ..+.++.+|..+.. .. ..+|+|+
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~---~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR---LG-DNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH---HC-TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHh---hc-CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 357887876 45555544332 27899999997 4433333221 11 24788899987642 11 6789888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+...- ......+....+.+.|...++...
T Consensus 77 ~~~~~---d~~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 77 ALSDN---DADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp ECSSC---HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred EecCC---hHHHHHHHHHHHHHCCCCEEEEEE
Confidence 76432 123445555666677777766633
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.01 E-value=2 Score=34.13 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=54.2
Q ss_pred EEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcc
Q 022864 66 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~i~~~~ 138 (291)
+|+=+|+ |..+..+++.. .+.+|+++|.+++.++...+ .. ++.++.+|..+... . ..+|+|++..
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~---~~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK---KL---KATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---HS---SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---Hc---CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 5677776 55555554432 27899999999987654332 12 46788999887421 1 5789988753
Q ss_pred cccccccHHHHHHHHHhccccCeeEEE
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.- ......+..+.+.+.|...++.
T Consensus 74 ~~---d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 74 PR---DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp SC---HHHHHHHHHHHHHTSCCCEEEE
T ss_pred CC---cHHHHHHHHHHHHHcCCCeEEE
Confidence 32 1223445555555666666554
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=88.97 E-value=2.1 Score=35.36 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++.+|=-|++.|. .+..|++. |++|..+|.+++.++...+..+..+. ++.++.+|+.+... .
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888877664 45555554 89999999999998888887777765 78899999988531 1
Q ss_pred CCccEEEEccc
Q 022864 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~i~~~~~ 139 (291)
++.|+++.+.-
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 68999998763
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.68 Score=38.68 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE---------E-EccccCCccCCCccEEEEcccc-
Q 022864 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI---------I-VADISTFEMEASYDRIYSIEMF- 140 (291)
Q Consensus 72 cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~---------~-~~d~~~~~~~~~~D~i~~~~~l- 140 (291)
++.|.....+. +.+|.+|..||-.-.. .-++|++ . .+|+.+....+++|+|+++..-
T Consensus 150 ~~~~~~~~~~~-k~~g~~vl~v~~~~~~-----------p~k~v~wi~Pi~GAt~~~~lDfg~p~~~~k~DvV~SDMApn 217 (320)
T 2hwk_A 150 HPQSDFSSFVS-KLKGRTVLVVGEKLSV-----------PGKMVDWLSDRPEATFRARLDLGIPGDVPKYDIIFVNVRTP 217 (320)
T ss_dssp CCCCCCHHHHH-TSSCSEEEEEESCCCC-----------TTSEEEEEESSTTCSEECCGGGCSCTTSCCEEEEEEECCCC
T ss_pred cCCCCHHHHHh-hCCCcEEEEEeccccc-----------CCceeEeeccCCCceeecccccCCccccCcCCEEEEcCCCC
Confidence 34455554444 5568888888521110 0013433 3 4565554333779999997643
Q ss_pred ---cc-c--ccHH----HHHHHHHhccccCeeEEEEeeccC
Q 022864 141 ---EH-M--KNYQ----NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ---~~-~--~~~~----~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++ - .|.. -++....++|+|||.+++..+...
T Consensus 218 ~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 218 YKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp CCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred CCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 22 1 2222 256677899999999999877654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.78 E-value=4.3 Score=33.20 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccC----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~---------- 128 (291)
.++++|=.|++.|. ++..|++. +++|++++.++...+...+...... ..++.++.+|+.+...-
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 35688888865442 33444444 8899999998876554443332211 12588899999874210
Q ss_pred -CCccEEEEccccc
Q 022864 129 -ASYDRIYSIEMFE 141 (291)
Q Consensus 129 -~~~D~i~~~~~l~ 141 (291)
++.|+++.+....
T Consensus 84 ~g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 84 FGRLDILVNNAGVN 97 (267)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 3679999877543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.77 E-value=2.6 Score=34.81 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC------------HHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
.++++|=.|++.|. ++..|++. +++|+++|.+ ++.++...+.....+. ++.++.+|+.+...
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAAD--GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRES 88 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHH
Confidence 46788888876542 44445544 8899999976 6666655555555554 79999999987531
Q ss_pred ----------C-CCccEEEEccccc
Q 022864 128 ----------E-ASYDRIYSIEMFE 141 (291)
Q Consensus 128 ----------~-~~~D~i~~~~~l~ 141 (291)
. ++.|+++.+..+.
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 0 4789999877543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=4.9 Score=32.79 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=-|++. .++..+++.+ .+++|+.+ +.++...+...+.....+. ++.++.+|+.+... .
T Consensus 3 ~~k~vlVTGas~-gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSR-GVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356777777654 4444443321 28898886 8888777666666555443 78999999988531 0
Q ss_pred CCccEEEEccc
Q 022864 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~i~~~~~ 139 (291)
++.|+++.+..
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 46799998764
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=88.53 E-value=2.4 Score=34.79 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH---HHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT---QKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~---~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++.| ++..+++.+ .+++|+.++.+.. ..+...+.....+. ++.++.+|+.+...
T Consensus 10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678888877654 444444432 3789999876543 33333344443343 68899999988531
Q ss_pred C-CCccEEEEccccccc--------ccH-----------HHHHHHHHhccccCeeEEEEe
Q 022864 128 E-ASYDRIYSIEMFEHM--------KNY-----------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~~--------~~~-----------~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. ++.|+++.+...... .+. -.+.+.+.+.|+++|.+++..
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 0 478999987643221 111 224555666777788776643
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=88.50 E-value=2.4 Score=32.62 Aligned_cols=91 Identities=9% Similarity=-0.023 Sum_probs=51.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--C-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-C-CCccEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--S-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-E-ASYDRI 134 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~-~~~D~i 134 (291)
+.+|+=+|||. .+..+++.. . +.+|+++|.+++.++.++ ..| +.++.+|..+.. . . ..+|+|
T Consensus 39 ~~~v~IiG~G~--~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~~g---~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGMGR--IGTGAYDELRARYGKISLGIEIREEAAQQHR----SEG---RNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECCSH--HHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----HTT---CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEECCCH--HHHHHHHHHHhccCCeEEEEECCHHHHHHHH----HCC---CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 56899998863 333333221 2 578999999998665443 233 456677765421 1 2 568988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+....- ......+-...+.+.|++.++..
T Consensus 110 i~~~~~---~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 110 LLAMPH---HQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp EECCSS---HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 874321 11122222344556677776654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.24 E-value=4.3 Score=33.31 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-----C--CCc
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-----E--ASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~-----~--~~~ 131 (291)
.++++|=.|++.|. ++..|++. +++|+.++.++...+...+.....+. ..+.++.+|+.+... . ++.
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAE--GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 46688877765442 34444444 88999999999887776666655432 357788899887421 1 578
Q ss_pred cEEEEcccc
Q 022864 132 DRIYSIEMF 140 (291)
Q Consensus 132 D~i~~~~~l 140 (291)
|+++.+...
T Consensus 87 d~lv~nAg~ 95 (267)
T 3t4x_A 87 DILINNLGI 95 (267)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999987644
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=88.18 E-value=4.9 Score=33.23 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHH-HHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++ |.++..+++.+ .+++|++++.++.. .+.+.+.....+. ++.++.+|+.+... .
T Consensus 28 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35677777765 44444444332 28899999877542 3333334444443 68889999887421 0
Q ss_pred CCccEEEEccccccc--------ccH-----------HHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHM--------KNY-----------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~--------~~~-----------~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+..|+++.+...... .+. ..+++.+.+.|+.+|.++...
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 468999987644321 111 224456666676777766644
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.12 E-value=4.5 Score=32.99 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022864 61 LEDGHTVLDVGCG-WGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 127 (291)
..++++||=.|++ +|.++..+++.+ .+++|+.++.+....+.+.+.....+ ++.++.+|+.+...
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999874 244444433321 28899999988665555555444433 57889999988531
Q ss_pred -CCCccEEEEcccccc-----------c--cc-----------HHHHHHHHHhccccCeeEEEEee
Q 022864 128 -EASYDRIYSIEMFEH-----------M--KN-----------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 -~~~~D~i~~~~~l~~-----------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-++.|+++.+..+.. . .+ ...+.+.+.+.++++|.+++...
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 047899998764422 1 11 12345566677777787666443
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.90 E-value=5.5 Score=32.98 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. +++|+++|.+++..+...+.. +. ++.++.+|+.+... .
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADE--GCHVLCADIDGDAADAAATKI---GC-GAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH---CS-SCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc---CC-cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788887776552 44445544 889999999987655544332 33 68899999988531 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 102 g~iD~lvnnAg~ 113 (277)
T 3gvc_A 102 GGVDKLVANAGV 113 (277)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.84 E-value=3.8 Score=34.36 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++ |.++..+++.+ .+++|++++.+++..+...+.....+. .++.++.+|+.+... .
T Consensus 25 ~~k~vlVTGas-~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 25 SGKSVIITGSS-NGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 46678877765 44444444332 288999999998877666555544432 168889999987531 0
Q ss_pred -CCccEEEEccc
Q 022864 129 -ASYDRIYSIEM 139 (291)
Q Consensus 129 -~~~D~i~~~~~ 139 (291)
+..|+++.+..
T Consensus 104 ~g~iD~lvnnAG 115 (297)
T 1xhl_A 104 FGKIDILVNNAG 115 (297)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 37899998764
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.80 E-value=2.6 Score=35.43 Aligned_cols=88 Identities=13% Similarity=0.001 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCccCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~D~i~~~~~ 139 (291)
..+.+|+=+|+|. |......+..+ +.+|+++|.++...+.+ ...|. .... .++.+. -...|+|+..-+
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~----~~~g~---~~~~~~~l~~~--l~~aDvVi~~~p 222 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARI----AEMGM---EPFHISKAAQE--LRDVDVCINTIP 222 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH----HHTTS---EEEEGGGHHHH--TTTCSEEEECCS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHH----HHCCC---eecChhhHHHH--hcCCCEEEECCC
Confidence 4688999999873 33333333344 78999999998754332 23332 3321 122221 157899998776
Q ss_pred ccccccHHHHHHHHHhccccCeeEEE
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.+-+.. ...+.+|||++++-
T Consensus 223 ~~~i~~------~~l~~mk~~~~lin 242 (293)
T 3d4o_A 223 ALVVTA------NVLAEMPSHTFVID 242 (293)
T ss_dssp SCCBCH------HHHHHSCTTCEEEE
T ss_pred hHHhCH------HHHHhcCCCCEEEE
Confidence 643321 23456889887654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.57 E-value=7.3 Score=35.05 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=58.9
Q ss_pred CCEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hC------C-C-CeEEEEccccCCc
Q 022864 64 GHTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LE------L-Q-NVEIIVADISTFE 126 (291)
Q Consensus 64 ~~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~------~-~-~v~~~~~d~~~~~ 126 (291)
-.+|.-||+|.=+ ++..+++. +.+|+++|.+++.++.+++.... .+ . . ...+ ..|...
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~-- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE-- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH--
Confidence 3589999999633 44455543 78999999999988877653321 11 0 0 1222 344322
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
-...|+|+..-. +...-...+++.+...++|+.+++.
T Consensus 112 -~~~aDlVIeaVp-e~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 -LSTVDLVVEAVF-EDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp -GTTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -HCCCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 156899887542 2222236788888888988876654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.50 E-value=2.8 Score=34.59 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------------ 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------ 127 (291)
.++++|=.|++.|. ++..|++. +++|++++.+++..+...+.....+. ++.++.+|+.+...
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888865442 33444443 88999999998877666555554443 68889999987421
Q ss_pred CCCccEEEEcccc
Q 022864 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~i~~~~~l 140 (291)
.+..|+++.+...
T Consensus 97 ~g~id~lv~nAg~ 109 (273)
T 1ae1_A 97 DGKLNILVNNAGV 109 (273)
T ss_dssp TSCCCEEEECCCC
T ss_pred CCCCcEEEECCCC
Confidence 1468999987644
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=87.36 E-value=3.5 Score=28.59 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~i~ 135 (291)
.+++|+=+|+ |..+..+++.. .+ .+|+++|.++...+... . .++.+...|+.+... -..+|+|+
T Consensus 4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---~~~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---MGVATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence 3568999998 44444443321 25 78999999988654433 1 256778888776321 15789999
Q ss_pred Ecccc
Q 022864 136 SIEMF 140 (291)
Q Consensus 136 ~~~~l 140 (291)
.....
T Consensus 75 ~~~~~ 79 (118)
T 3ic5_A 75 SAAPF 79 (118)
T ss_dssp ECSCG
T ss_pred ECCCc
Confidence 87643
|
| >3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=87.25 E-value=2.2 Score=30.12 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
+.++||=+ |+.|..+..++++ .++.+++.|+ .+........+.... ..||+|++.+=+.
T Consensus 5 ~~mkIlL~-C~aGmSTsllv~k------------------m~~~a~~~gi-~v~i~a~~~~~~~~~~~~~DvvLLgPQV~ 64 (108)
T 3nbm_A 5 KELKVLVL-CAGSGTSAQLANA------------------INEGANLTEV-RVIANSGAYGAHYDIMGVYDLIILAPQVR 64 (108)
T ss_dssp CCEEEEEE-ESSSSHHHHHHHH------------------HHHHHHHHTC-SEEEEEEETTSCTTTGGGCSEEEECGGGG
T ss_pred cCceEEEE-CCCCCCHHHHHHH------------------HHHHHHHCCC-ceEEEEcchHHHHhhccCCCEEEEChHHH
Confidence 45677755 6666666667665 4556666777 466655444444333 6799999975443
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+. ++++.+...+.|+=+.
T Consensus 65 y~------~~~ik~~~~~~~ipV~ 82 (108)
T 3nbm_A 65 SY------YREMKVDAERLGIQIV 82 (108)
T ss_dssp GG------HHHHHHHHTTTTCEEE
T ss_pred HH------HHHHHHHhhhcCCcEE
Confidence 33 4445555556565333
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=86.97 E-value=5 Score=33.26 Aligned_cols=75 Identities=7% Similarity=0.065 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCH-HHHHHHHHHHH-HhCCCCeEEEEccccC----Ccc------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSK-TQKEFIEEQCR-VLELQNVEIIVADIST----FEM------ 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~-~~~~~a~~~~~-~~~~~~v~~~~~d~~~----~~~------ 127 (291)
.++++|=.|++.|. ++..|++. +++|++++.++ +..+.+.+... ..+ .++.++.+|+.+ ...
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQT--GYRVVIHYHNSAEAAVSLADELNKERS-NTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHH--TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhhcC-CceEEEEeecCCccCCHHHHHHHHH
Confidence 46678877766542 44455555 78999999887 65554444443 333 378899999988 320
Q ss_pred ----C-CCccEEEEcccc
Q 022864 128 ----E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ----~-~~~D~i~~~~~l 140 (291)
. +..|+++.+..+
T Consensus 99 ~~~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 0 478999987643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.96 E-value=0.23 Score=41.17 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=37.7
Q ss_pred eEEEEccccCCc---cCCCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 115 VEIIVADISTFE---MEASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 115 v~~~~~d~~~~~---~~~~~D~i~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..++++|..+.. ..+++|+|++..++..- ......++.+.++|+|||.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 346677775531 12689999998887533 134567888899999999998874
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.89 E-value=9.2 Score=31.85 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=54.1
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE--------c---cccCCccC-CC
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV--------A---DISTFEME-AS 130 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~--------~---d~~~~~~~-~~ 130 (291)
++|.=||+|. |. ++..|++. +.+|+++|.+++.++..++ .++ .... . +..+.... ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRK----NGL---IADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----HCE---EEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHh----CCE---EEEeCCCeeEecceeecchhhcccCCC
Confidence 5899999984 32 34445443 6799999999886655433 232 1111 0 11111110 27
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+..-.-. ....+++.+...++|+..++..
T Consensus 75 ~d~vi~~v~~~---~~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 75 VDLIIALTKAQ---QLDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp CSEEEECSCHH---HHHHHHHHHGGGCCTTCEEEEC
T ss_pred CCEEEEEeccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence 89998865432 3567888888888887765543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=86.82 E-value=4.3 Score=33.71 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=52.8
Q ss_pred CEEEEEcC-Cc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 65 HTVLDVGC-GW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGc-G~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
++|.=||+ |. |. ++..|++. +.+|+++|.+++..+.+.+ .|+ .. .+..+. -...|+|+..-.-.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~----~g~---~~--~~~~~~--~~~aDvVi~av~~~ 78 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQG----MGI---PL--TDGDGW--IDEADVVVLALPDN 78 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHH----TTC---CC--CCSSGG--GGTCSEEEECSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHh----cCC---Cc--CCHHHH--hcCCCEEEEcCCch
Confidence 58999999 84 32 44445443 6799999999886655433 343 11 122221 15689998865443
Q ss_pred ccccHHHHHHHHHhccccCeeEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
....+++.+...++||..++
T Consensus 79 ---~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 79 ---IIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ---HHHHHHHHHGGGSCTTCEEE
T ss_pred ---HHHHHHHHHHHhCCCCCEEE
Confidence 24677788888888876544
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=2.9 Score=34.10 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------C-
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~- 128 (291)
.++++|=.|++. .++..+++.+ .+++|++++.+++..+...+.....+. ++.++.+|+.+... -
T Consensus 8 ~~k~vlVTGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467888777654 4444443321 288999999998876665555544443 68889999987421 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 86 g~id~lv~~Ag~ 97 (260)
T 2ae2_A 86 GKLNILVNNAGI 97 (260)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987643
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.69 E-value=0.42 Score=41.34 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=55.8
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 128 (291)
+....+++.+||=.|+ |.|..+..+++...+.+|++++ ++...+.+ + .|.+ .++. +-.++. ..
T Consensus 136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~----~-~ga~--~~~~-~~~~~~~~~~~~~~ 206 (349)
T 4a27_A 136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAI----K-DSVT--HLFD-RNADYVQEVKRISA 206 (349)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHH----G-GGSS--EEEE-TTSCHHHHHHHHCT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHH----H-cCCc--EEEc-CCccHHHHHHHhcC
Confidence 4457789999999998 3577777887665457899988 45433332 2 3442 1222 111111 12
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.+|+|+-.-.- ..++...++|+++|++++..
T Consensus 207 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 207 EGVDIVLDCLCG-------DNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp TCEEEEEEECC--------------CTTEEEEEEEEEEC
T ss_pred CCceEEEECCCc-------hhHHHHHHHhhcCCEEEEEC
Confidence 569988864221 12366789999999988754
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.64 E-value=3.4 Score=34.76 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCccCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~D~i~~~~~ 139 (291)
..+++|+=+|+|. |......+..+ +.+|+++|.++...+.+. ..+. .... .++.+. -...|+|+..-.
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~----~~g~---~~~~~~~l~~~--l~~aDvVi~~~p 224 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARIT----EMGL---VPFHTDELKEH--VKDIDICINTIP 224 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTC---EEEEGGGHHHH--STTCSEEEECCS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH----HCCC---eEEchhhHHHH--hhCCCEEEECCC
Confidence 4688999999874 33333333344 789999999987543322 2332 2221 222221 157899998877
Q ss_pred ccccccHHHHHHHHHhccccCeeEEE
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.+-+. . ...+.+|||++++-
T Consensus 225 ~~~i~-~-----~~~~~mk~g~~lin 244 (300)
T 2rir_A 225 SMILN-Q-----TVLSSMTPKTLILD 244 (300)
T ss_dssp SCCBC-H-----HHHTTSCTTCEEEE
T ss_pred hhhhC-H-----HHHHhCCCCCEEEE
Confidence 64332 1 24567899887643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=86.60 E-value=4.8 Score=32.10 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC--CCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME--ASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~--~~~D~i~~~ 137 (291)
.+++||=.|+ +|.++..+++.+ .+.+|++++.++...+... .. ++ .++.+|+.+.... +..|+|+.+
T Consensus 20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~----~~---~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELR----ER---GASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----HT---TCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHH----hC---CCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 4789998875 455444444332 3789999999887644322 11 57 8999999722111 678999987
Q ss_pred cccc
Q 022864 138 EMFE 141 (291)
Q Consensus 138 ~~l~ 141 (291)
....
T Consensus 92 ag~~ 95 (236)
T 3e8x_A 92 AGSG 95 (236)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=8.8 Score=36.41 Aligned_cols=103 Identities=13% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC--------CCEEEEEcCCHHHHHHHHHHHHHhC---------------------C-
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLE---------------------L- 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~---------------------~- 112 (291)
+...|+-||||.=.....|....+ +..++=||. |+.++.-++.++..+ .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 467899999999988888876533 567777787 555554444443211 0
Q ss_pred --CCeEEEEccccCCcc-----------C-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022864 113 --QNVEIIVADISTFEM-----------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 --~~v~~~~~d~~~~~~-----------~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++..++.+|+.+... + ...-++++-.++.++ +...++++.+.+. |+|.+++...
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~ 255 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQ 255 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEE
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEe
Confidence 267889999987410 2 233467777888888 4567788888754 6776666444
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.52 E-value=3.7 Score=33.61 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++.+++..+...+.....+. ++.++.+|+.+... -
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46788988876653 45555554 88999999999888777776666554 78999999988531 0
Q ss_pred CCccEEEEcc
Q 022864 129 ASYDRIYSIE 138 (291)
Q Consensus 129 ~~~D~i~~~~ 138 (291)
++.|+++.+.
T Consensus 87 g~id~lv~nA 96 (264)
T 3ucx_A 87 GRVDVVINNA 96 (264)
T ss_dssp SCCSEEEECC
T ss_pred CCCcEEEECC
Confidence 4789999876
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.50 E-value=4.8 Score=33.19 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++|.=||||. |. ++..+.+. +.+|+++|.+++.++.+. ..+.. .. ...|..+. ...|+|+..-.-.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~----~~g~~-~~-~~~~~~~~---~~~D~vi~av~~~- 68 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAV----ERQLV-DE-AGQDLSLL---QTAKIIFLCTPIQ- 68 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTSC-SE-EESCGGGG---TTCSEEEECSCHH-
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----hCCCC-cc-ccCCHHHh---CCCCEEEEECCHH-
Confidence 3678899884 22 34444443 679999999998665443 33431 11 22344333 4679998865432
Q ss_pred cccHHHHHHHHHhccccCeeEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
....+++.+...++|+..++
T Consensus 69 --~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 69 --LILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp --HHHHHHHHHGGGSCTTCEEE
T ss_pred --HHHHHHHHHHhhCCCCCEEE
Confidence 34667788888888877553
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=86.16 E-value=2 Score=37.32 Aligned_cols=89 Identities=8% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 64 GHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~-G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++|.=||+|. | .++..|++. +.+|+++|.+++.++.+. ..+. .. ..+..+.... ...|+|+..-.-
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~----~~g~---~~-~~s~~e~~~~a~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALE----REGI---AG-ARSIEEFCAKLVKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----TTTC---BC-CSSHHHHHHHSCSSCEEEECSCG
T ss_pred CCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHH----HCCC---EE-eCCHHHHHhcCCCCCEEEEeCCH
Confidence 57999999884 2 244555544 789999999998655443 2333 11 1222222111 345999876544
Q ss_pred cccccHHHHHHHHHhccccCeeEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
. ....+++.+...|++|.+++-
T Consensus 92 ~---~v~~vl~~l~~~l~~g~iiId 113 (358)
T 4e21_A 92 A---VVDSMLQRMTPLLAANDIVID 113 (358)
T ss_dssp G---GHHHHHHHHGGGCCTTCEEEE
T ss_pred H---HHHHHHHHHHhhCCCCCEEEe
Confidence 3 456778888888888766543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.13 E-value=13 Score=33.50 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHH-HH---HHHHHHhCC----------CCeEEEEccccCCcc
Q 022864 64 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKE-FI---EEQCRVLEL----------QNVEIIVADISTFEM 127 (291)
Q Consensus 64 ~~~vLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~-~a---~~~~~~~~~----------~~v~~~~~d~~~~~~ 127 (291)
-.+|-=||+|. +.++..+++. +.+|+++|.+++... .. .+...+.|. .++.+ ..|+..+
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~al-- 128 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHKL-- 128 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGGC--
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHHH--
Confidence 36899999996 3455556654 889999999998211 11 111112221 23444 2344321
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...|+|+..-+ +...-...+++++...++|+.++...
T Consensus 129 -~~aDlVIeAVp-e~~~vk~~v~~~l~~~~~~~aIlasn 165 (460)
T 3k6j_A 129 -SNCDLIVESVI-EDMKLKKELFANLENICKSTCIFGTN 165 (460)
T ss_dssp -TTCSEEEECCC-SCHHHHHHHHHHHHTTSCTTCEEEEC
T ss_pred -ccCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCCEEEec
Confidence 56899887532 22223467889999999998877543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.12 E-value=2.3 Score=34.67 Aligned_cols=75 Identities=9% Similarity=-0.083 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------~ 129 (291)
.++++|=.|++.|. ++..|++. |++|++++.++...+.+.+.....+. ++.++.+|+.+...- +
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 46788888877553 44445544 88999999999887777777666554 789999999885311 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
..|+++.+...
T Consensus 83 ~id~lv~nAg~ 93 (252)
T 3h7a_A 83 PLEVTIFNVGA 93 (252)
T ss_dssp CEEEEEECCCC
T ss_pred CceEEEECCCc
Confidence 68999987654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=4.7 Score=32.68 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcC-CHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 128 (291)
.+++||=.|++ |.++..+++.+ .+.+|++++. ++...+...+.....+. ++.++.+|+.+... .
T Consensus 6 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35678777654 55555544432 2789999998 77665555554444443 68889999987431 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 84 g~id~li~~Ag~ 95 (261)
T 1gee_A 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999987643
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=85.92 E-value=5.1 Score=33.87 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc-
Q 022864 63 DGHTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM- 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~- 139 (291)
+..+|.=+|+|..+ .+..++......+++.+|++++....+..... ...+++... .|..++ ...|+|+...-
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~-~~~~~i~~t-~d~~~l---~~aD~Vi~aag~ 87 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI-FNLPNVEIS-KDLSAS---AHSKVVIFTVNS 87 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH-HTCTTEEEE-SCGGGG---TTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh-hcCCCeEEe-CCHHHH---CCCCEEEEcCCC
Confidence 34689999999533 55566655323489999999864334444433 222355553 554332 56799998641
Q ss_pred -----------ccccccHHHHHHHHHhccccCeeEEEE
Q 022864 140 -----------FEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 140 -----------l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...++-...+++.+.+.. |++++++.
T Consensus 88 ~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 124 (303)
T 2i6t_A 88 LGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA 124 (303)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 222223456677777764 99998773
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.64 E-value=3.5 Score=33.35 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++.+++..+...+.....+. ++.++.+|+.+... .
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888876542 44444444 88999999999888777766665543 68899999988531 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 378999987644
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.63 E-value=1.7 Score=37.36 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=55.6
Q ss_pred CCC-CEEEEE-cCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------CCCc
Q 022864 62 EDG-HTVLDV-GCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------EASY 131 (291)
Q Consensus 62 ~~~-~~vLDi-GcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~ 131 (291)
.++ .+||=. |+| .|..+..+++.. +++|++++.+++..+.+++ .|.+ ..+..+-.++.. ...+
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~v~~~~~~~g~ 234 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKD----IGAA--HVLNEKAPDFEATLREVMKAEQP 234 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHH----HTCS--EEEETTSTTHHHHHHHHHHHHCC
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC--EEEECCcHHHHHHHHHHhcCCCC
Confidence 344 566644 443 566777777665 7899999999987776653 4542 122221112110 1368
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+-+..- ..+..+.++|+++|.+++.
T Consensus 235 D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 235 RIFLDAVTG-------PLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp CEEEESSCH-------HHHHHHHHHSCTTCEEEEC
T ss_pred cEEEECCCC-------hhHHHHHhhhcCCCEEEEE
Confidence 998865332 2246678899999998774
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=85.56 E-value=5 Score=32.69 Aligned_cols=72 Identities=8% Similarity=0.105 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------- 128 (291)
.++++|=.|++.|. ++..|+++ +++|+.+|.+++..+...+. .+ .++.++.+|+.+...-
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVRE--GATVAIADIDIERARQAAAE---IG-PAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---HC-TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH---hC-CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46788888866442 34444544 88999999988765544332 23 2688999999874310
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 81 g~id~lv~~Ag~ 92 (259)
T 4e6p_A 81 GGLDILVNNAAL 92 (259)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 378999987654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.53 E-value=1.9 Score=35.65 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~---------- 128 (291)
.++++|=.|++ |.++..+++.+ .+++|++++.+++..+...+....... .++.++.+|+.+...-
T Consensus 5 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (278)
T 1spx_A 5 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 83 (278)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence 35677777765 44444443321 288999999998776655444421111 2688899999874310
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 84 ~g~id~lv~~Ag~ 96 (278)
T 1spx_A 84 FGKLDILVNNAGA 96 (278)
T ss_dssp HSCCCEEEECCC-
T ss_pred cCCCCEEEECCCC
Confidence 378999987643
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.42 E-value=4 Score=33.29 Aligned_cols=75 Identities=7% Similarity=-0.019 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 128 (291)
.++++|=.|++.|. ++..|++. +++|+.+|.+++..+...+.....+. ++.++.+|+.+... .
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888776553 45555555 88999999999887777766666554 78999999988531 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 88 g~id~lv~nAg~ 99 (256)
T 3gaf_A 88 GKITVLVNNAGG 99 (256)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987644
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=13 Score=33.16 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 51 MLELYCERSR-LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~-~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.++.+.+..+ ...+.+|+=+|+|. |......++.+ |++|+++|.++.....+ ...|. . ..++.+..
T Consensus 206 ~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~-Ga~Viv~D~dp~ra~~A----~~~G~---~--v~~Leeal-- 273 (435)
T 3gvp_A 206 ILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAM-GSIVYVTEIDPICALQA----CMDGF---R--LVKLNEVI-- 273 (435)
T ss_dssp HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHH----HHTTC---E--ECCHHHHT--
T ss_pred HHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHC-CCEEEEEeCChhhhHHH----HHcCC---E--eccHHHHH--
Confidence 3344444333 34789999999985 44444444445 88999999998643222 22332 2 23333321
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...|+|+...--.++-+ ....+.+|||++++-.
T Consensus 274 ~~ADIVi~atgt~~lI~-----~e~l~~MK~gailINv 306 (435)
T 3gvp_A 274 RQVDIVITCTGNKNVVT-----REHLDRMKNSCIVCNM 306 (435)
T ss_dssp TTCSEEEECSSCSCSBC-----HHHHHHSCTTEEEEEC
T ss_pred hcCCEEEECCCCcccCC-----HHHHHhcCCCcEEEEe
Confidence 56799988522222211 2455678999876553
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.27 E-value=7.1 Score=31.95 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. +++|++++.+++..+...+ ..+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVA---ALE-AEAIAVVADVSDPKAVEAVFAEALEEF 78 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---TCC-SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---Hhc-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35688878765442 34444444 8899999998875543322 222 368889999987431 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 79 g~iD~lvnnAg~ 90 (263)
T 2a4k_A 79 GRLHGVAHFAGV 90 (263)
T ss_dssp SCCCEEEEGGGG
T ss_pred CCCcEEEECCCC
Confidence 467999987654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.13 E-value=1.4 Score=38.31 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---C-CCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~~D~i~~~ 137 (291)
..++||=|||| ..+..+++.. ...+|+.+|.+.+.++.+++ .+..+..|+.+... . ...|+|++.
T Consensus 15 ~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~d~~d~~~l~~~~~~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVKE--------FATPLKVDASNFDKLVEVMKEFELVIGA 84 (365)
T ss_dssp -CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHTT--------TSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc--------cCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence 46799999995 3333333321 25689999999876554422 45566778766431 1 678999985
Q ss_pred c
Q 022864 138 E 138 (291)
Q Consensus 138 ~ 138 (291)
.
T Consensus 85 ~ 85 (365)
T 3abi_A 85 L 85 (365)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=85.00 E-value=5 Score=33.29 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHH-------HHHHHHHHHHHhCCCCeEEEEccccCCcc-----
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKT-------QKEFIEEQCRVLELQNVEIIVADISTFEM----- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~-------~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----- 127 (291)
.++++|=.|++.|. ++..|+++ +++|++++.+.. .++...+.....+. ++.++.+|+.+...
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAAD--GANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTT--TCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHH
Confidence 46788888876552 34444444 789999998765 34444444444444 78899999988531
Q ss_pred ----C--CCccEEEEcccc
Q 022864 128 ----E--ASYDRIYSIEMF 140 (291)
Q Consensus 128 ----~--~~~D~i~~~~~l 140 (291)
. ++.|+++.+...
T Consensus 85 ~~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 0 478999987644
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=84.86 E-value=3.2 Score=35.50 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC-----------CCeEEEEccc
Q 022864 63 DGHTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL-----------QNVEIIVADI 122 (291)
Q Consensus 63 ~~~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~-----------~~v~~~~~d~ 122 (291)
...+|-=||+|+=+ .+..++.. |.+|+.+|++++.++.+.+++++. +. .++.+ ..|+
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l 81 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNL 81 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccch
Confidence 34689999999644 34444444 899999999999988877665432 11 01222 1222
Q ss_pred cCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 123 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+. -...|+|+= .+.+.+.-..++++++-++++|+.+|.-.+.+
T Consensus 82 ~~a--~~~ad~ViE-av~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs 125 (319)
T 3ado_A 82 AEA--VEGVVHIQE-CVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC 125 (319)
T ss_dssp HHH--TTTEEEEEE-CCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS
T ss_pred HhH--hccCcEEee-ccccHHHHHHHHHHHHHHHhhhcceeehhhhh
Confidence 221 145676653 35555555688999999999999887665544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=84.85 E-value=0.46 Score=40.74 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=40.4
Q ss_pred eEEE-EccccCCc---cCCCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 115 VEII-VADISTFE---MEASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 115 v~~~-~~d~~~~~---~~~~~D~i~~~~~l~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
..++ ++|..+.. ..+++|+|++..++... ......+..+.++|+|||.+++....
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~ 108 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 108 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence 5667 88887632 22689999999987532 23456788889999999999887543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.80 E-value=10 Score=31.01 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------- 128 (291)
.+++||=.|++ |.++..+++.+ .+++|+.+ +.+++..+...+.....+. ++.++.+|+.+...-
T Consensus 25 ~~k~vlITGas-~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 25 DTPVVLVTGGS-RGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGG-EAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CSCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45677777765 44444444332 27888776 6777776666666555543 788999999875310
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 103 g~id~li~nAg~ 114 (272)
T 4e3z_A 103 GRLDGLVNNAGI 114 (272)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999987643
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.53 E-value=5.9 Score=33.58 Aligned_cols=93 Identities=17% Similarity=0.133 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----CCeEEE-----EccccCCccCCCc
Q 022864 63 DGHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEII-----VADISTFEMEASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~-G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~-----~~d~~~~~~~~~~ 131 (291)
..++|.=||+|. | .++..|++. +.+|+.+ .+++.++..++ .|+ +...+. ..|... ...+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~----~g~~~~~~~~~~~~~~~~~~~~~~---~~~~ 87 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEA----TGLRLETQSFDEQVKVSASSDPSA---VQGA 87 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHH----HCEEEECSSCEEEECCEEESCGGG---GTTC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHh----CCeEEEcCCCcEEEeeeeeCCHHH---cCCC
Confidence 357999999984 3 345555544 7799999 88876655543 332 011110 112111 1578
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|+..-.-. +...+++.+...++|+..++...-
T Consensus 88 D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~~n 121 (318)
T 3hwr_A 88 DLVLFCVKST---DTQSAALAMKPALAKSALVLSLQN 121 (318)
T ss_dssp SEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEECS
T ss_pred CEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEeCC
Confidence 9988865443 457888999999999877655433
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=84.46 E-value=5.6 Score=35.67 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=57.4
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH------------HHh-CCCCeEEEEccccCCccCC
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQC------------RVL-ELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~-~~~~v~~~~~d~~~~~~~~ 129 (291)
++|.=||+|. |. ++..|++. +.+|+++|.+++.++..++.. ... ...++.+. .|..+.. .
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea~--~ 77 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQAV--P 77 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHHG--G
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHHH--h
Confidence 5788899984 32 34445544 789999999999877655410 000 00123332 3333211 4
Q ss_pred CccEEEEcccccc-------cccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEH-------MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..|+|+..-.-.. +.....+++.+.+.|++|..++..+
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 5788887543321 1245677888889998887665543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.41 E-value=6.8 Score=33.49 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=54.2
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC----CeE------EEEccccCCccCCCcc
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----NVE------IIVADISTFEMEASYD 132 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~------~~~~d~~~~~~~~~~D 132 (291)
++|.=||+|. |. ++..|++. +.+|+++|.+++.++..++. .++. ... ....|..+. ...+|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDR---GAIIAEGPGLAGTAHPDLLTSDIGLA--VKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH---TSEEEESSSCCEEECCSEEESCHHHH--HTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhc---CCeEEeccccccccccceecCCHHHH--HhcCC
Confidence 6899999985 32 34444443 77999999998876554432 1210 000 011121111 14689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+..-.-. ....+++.+...+++|..++..
T Consensus 78 ~vi~~v~~~---~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 78 VILIVVPAI---HHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp EEEECSCGG---GHHHHHHHHGGGCCTTCEEEES
T ss_pred EEEEeCCch---HHHHHHHHHHHhCCCCCEEEEc
Confidence 988765443 2367788888889987765543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.11 E-value=4.2 Score=32.73 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|+++ +++|++++.++...+...+..+..+. ++.++.+|+.+... .
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35678877765442 34444444 88999999999888777776666654 78999999987531 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 81 ~~id~li~~Ag~ 92 (247)
T 3lyl_A 81 LAIDILVNNAGI 92 (247)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987644
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=83.99 E-value=4.1 Score=33.70 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. |++|++++.+++..+...+.....+. ++.++.+|+.+... .
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888876552 34445544 88999999999887777666655554 78999999987531 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 100 g~id~lv~nAg~ 111 (279)
T 3sju_A 100 GPIGILVNSAGR 111 (279)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 478999987644
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=83.93 E-value=11 Score=31.16 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=54.0
Q ss_pred CEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 65 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++|.=||+|.= .++..+++..++.+|+++|.+++..+.+. ..|.. .....|..+.. ...|+|+..-.-.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~--~~~~~~~~~~~--~~aDvVilavp~~- 77 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL----ERGIV--DEATADFKVFA--ALADVIILAVPIK- 77 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH----HTTSC--SEEESCTTTTG--GGCSEEEECSCHH-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH----HcCCc--ccccCCHHHhh--cCCCEEEEcCCHH-
Confidence 58999999852 34555555533579999999988665443 23431 11223333321 4679988865443
Q ss_pred cccHHHHHHHHHhc-cccCeeEE
Q 022864 143 MKNYQNLLKKISKW-MKEDTLLF 164 (291)
Q Consensus 143 ~~~~~~~l~~~~~~-LkpgG~l~ 164 (291)
....+++.+... ++++..++
T Consensus 78 --~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 78 --KTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp --HHHHHHHHHHTSCCCTTCEEE
T ss_pred --HHHHHHHHHHhcCCCCCCEEE
Confidence 235677777777 88776544
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=83.88 E-value=2 Score=38.04 Aligned_cols=45 Identities=9% Similarity=-0.221 Sum_probs=34.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCC-CCE----EEEEcCCHHHHHHHHHHHH
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYS-NCK----ITGICNSKTQKEFIEEQCR 108 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~-~~~----v~~vD~s~~~~~~a~~~~~ 108 (291)
..+|+|+.||.|+.+..+.+..- ..- |.++|+++..++..+.+..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 46999999999999998876520 012 7889999998877776664
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.85 E-value=2.7 Score=36.34 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=58.2
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc------CCccCCCc
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS------TFEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~------~~~~~~~~ 131 (291)
...+++.+||=+|+| .|..+..+++..++++|+++|.+++..+.++ +.|.+. ++...-. +......+
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~v~~~~~g~g~ 255 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RLGADH--VVDARRDPVKQVMELTRGRGV 255 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HTTCSE--EEETTSCHHHHHHHHTTTCCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCCE--EEeccchHHHHHHHHhCCCCC
Confidence 677899999999986 4566777776543679999999998766654 345421 2211100 11111368
Q ss_pred cEEEEcccccccccHHH--HHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQN--LLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~--~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+-.-.- .. .++...+. ++|+++..
T Consensus 256 Dvvid~~G~------~~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 256 NVAMDFVGS------QATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp EEEEESSCC------HHHHHHGGGGEE--EEEEEEEC
T ss_pred cEEEECCCC------chHHHHHHHhhc--CCCEEEEE
Confidence 998864321 22 45555565 99988764
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=83.84 E-value=2.7 Score=42.91 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---------------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--------------- 125 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--------------- 125 (291)
+..+++||-||.|+++.-+.+. |. .+.++|+++.+++..+.|. +...++.+|+.++
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~ 922 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQ 922 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCC
T ss_pred CCceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhh
Confidence 4679999999999999998765 64 5789999999776655543 2345555554321
Q ss_pred --ccCCCccEEEEccccccc
Q 022864 126 --EMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 126 --~~~~~~D~i~~~~~l~~~ 143 (291)
+..+.+|+|+...+-..+
T Consensus 923 ~lp~~~~vDvl~GGpPCQ~F 942 (1330)
T 3av4_A 923 RLPQKGDVEMLCGGPPCQGF 942 (1330)
T ss_dssp BCCCTTTCSEEEECCCCTTT
T ss_pred hccccCccceEEecCCCccc
Confidence 112468999987755444
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.79 E-value=3.8 Score=33.55 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------- 128 (291)
.++++|=.|++.|. ++..|++. +++|+.++.+++..+.+.+.....+..++.++.+|+.+...-
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARA--GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46678877765442 34444444 889999999998877776666655534789999999885310
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 87 g~id~lvnnAg~ 98 (262)
T 3pk0_A 87 GGIDVVCANAGV 98 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987643
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=83.79 E-value=3.8 Score=33.49 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
..+++||=.|++. .++..+++.+ .+++|++++.+++..+...+.....+. ++.++.+|+.+... .
T Consensus 27 l~~k~vlITGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 27 LSGQVAVVTGASR-GIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 3567888777654 4444444331 288999999999887777766666554 68899999987531 0
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 468999987654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.76 E-value=5.8 Score=31.93 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------C-CCc
Q 022864 62 EDGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~ 131 (291)
.++++||=.|++.|. ++..|+++ +.+|+.++.++..++...+.. . .++.+..+|+.+... . +..
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKL--GSKVIISGSNEEKLKSLGNAL---K-DNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---C-SSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHh---c-cCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 467788877775442 33444444 889999999988765544332 2 368888999887431 1 478
Q ss_pred cEEEEcccc
Q 022864 132 DRIYSIEMF 140 (291)
Q Consensus 132 D~i~~~~~l 140 (291)
|+++.+...
T Consensus 86 d~li~~Ag~ 94 (249)
T 3f9i_A 86 DILVCNAGI 94 (249)
T ss_dssp SEEEECCC-
T ss_pred CEEEECCCC
Confidence 999987654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=8.6 Score=31.32 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++. |.++..+++.+ .+++|++++.++...+.+.+.....+ +..++.+|+.+... .
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356888888752 44444444332 27899999987632222222222222 34678899887421 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 86 g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 86 PKFDGFVHSIGF 97 (265)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999987654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=83.65 E-value=3 Score=33.68 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 129 (291)
.+++||=.|+ +|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+...- +
T Consensus 10 ~~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3567876664 566555555432 378999999998876655555544443 688899999874310 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
..|+|+.+...
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.60 E-value=6.3 Score=32.20 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCEEEEEcCCc-ch-HHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 64 GHTVLDVGCGW-GS-LSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~-G~-~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
+++|.=||||. |. ++..+++. +.+ |+++|.+++..+.+.+ ..+. .. ..|..+.. ...|+|+..-.-
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~---~~g~---~~-~~~~~~~~--~~~Dvvi~av~~ 78 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQ---KVEA---EY-TTDLAEVN--PYAKLYIVSLKD 78 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHH---HTTC---EE-ESCGGGSC--SCCSEEEECCCH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHH---HcCC---ce-eCCHHHHh--cCCCEEEEecCH
Confidence 46899999984 32 44455544 566 8999999886554433 2232 22 23443322 467999886544
Q ss_pred cccccHHHHHHHHHhccccCeeEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
. ....+++.+...+++|..++-
T Consensus 79 ~---~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 79 S---AFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp H---HHHHHHHHHHTTCCTTCEEEE
T ss_pred H---HHHHHHHHHHhhcCCCcEEEE
Confidence 3 236677788888878765544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 291 | ||||
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 1e-44 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 9e-43 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 4e-40 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-19 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-16 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-14 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 3e-14 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 9e-13 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 2e-10 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 2e-09 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-09 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 5e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 6e-09 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-08 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 3e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-08 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 7e-08 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-06 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 8e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 8e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 9e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-05 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 2e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 3e-05 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 3e-05 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 6e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-04 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 3e-04 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 4e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 5e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 6e-04 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.001 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.002 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.002 |
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 151 bits (381), Expect = 1e-44
Identities = 64/295 (21%), Positives = 107/295 (36%), Gaps = 31/295 (10%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
HY+ FFKL L YSC YF TLE+A+ A +L ++ LE G T+LD+G
Sbjct: 10 RSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIG 69
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWGS + +Y + + G+ S+ Q + ++ + + E +
Sbjct: 70 CGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG-WEEFDEPV 127
Query: 132 DRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH------ 176
DRI S+ FEH + Y KK +D + +H
Sbjct: 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLT 187
Query: 177 --FEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQTSEEWLKRM 233
+I F GG +P + + Y+ + V+ + G +Y T W +
Sbjct: 188 SPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADAL 247
Query: 234 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ + G++ + + ++LF V F K
Sbjct: 248 QAHKDEAIAL----KGQE----TCDIYMHYLRGCSDLFRDKYT---DVCQFTLVK 291
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 146 bits (368), Expect = 9e-43
Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 24/288 (8%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY+L FF+L L YSC YF TL++A+ A ++L + L+ G T+LDVG
Sbjct: 11 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVG 70
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG+ + +KY + + + L++ +++A F+
Sbjct: 71 CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP--V 128
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC--------HKTFAYHFEDTN 181
DRI SI FEH + Y + + D ++ +H + F
Sbjct: 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR 188
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
+I F GG +PS ++ V HYA+T + W + N
Sbjct: 189 FLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQA 248
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ Q+ + + + AE+F V F +K
Sbjct: 249 IAL--------QSEEVYERYMKYLTGCAEMFRIGYI---DVNQFTCQK 285
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 138 bits (349), Expect = 4e-40
Identities = 62/288 (21%), Positives = 105/288 (36%), Gaps = 24/288 (8%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY++ FF L YSC YF TLE+A+ A ++L ++ L+ G T+LD+G
Sbjct: 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIG 60
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG+ + + + G+ SK Q E+ ++ ++ +
Sbjct: 61 CGWGTTMRRA-VERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG-WEDFAEPV 118
Query: 132 DRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHH--------FCHKTFAYHFEDTN 181
DRI SIE FEH NY + K+ M D + V + FE
Sbjct: 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETAR 178
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDDVSVVD-HWLVNGKHYAQTSEEWLKRMDNNLASI 240
+I F GG +PS +++ + L HY +T W + +N
Sbjct: 179 FIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKA 238
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ + + + + F + + K
Sbjct: 239 IEVT--------SEEVYNRYMKYLRGCEHYFTDEM---LDCSLVTYLK 275
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 81.9 bits (201), Expect = 5e-19
Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 11/222 (4%)
Query: 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 108
+ R++ G +LD+G G G + A+ + TGI S + +
Sbjct: 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAE 77
Query: 109 VLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167
L + V I D + + D + + + +++ +K ++ +
Sbjct: 78 ELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 137
Query: 168 FCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQD-DVSVVDHWLVN----GKHY 222
+ T + T + L+ F D VV+ L + ++
Sbjct: 138 PYWR----QLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYE 193
Query: 223 AQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFF 264
A + ++ N ++ Y R F
Sbjct: 194 AAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECF 235
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.0 bits (189), Expect = 1e-16
Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 42/274 (15%)
Query: 7 TDKAKEQHYELPTSFFKLVL--------GKYFKYSCCYFSDASKTLEDAEKAMLELYCER 58
E ++P SF L Y + ++ + L ++
Sbjct: 152 IIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQ 211
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----- 113
+L+ G T +D+G G G+ + A + G + Q L+ +
Sbjct: 212 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271
Query: 114 ------NVEIIVADISTFEMEASYDR--IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
+ + + + + + + F ++ ++KI + K +
Sbjct: 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI-- 329
Query: 166 HHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQT 225
K+ N + + F +D VS W +G Y
Sbjct: 330 --ISLKSLRSLTYQIN--FYNVENIF---NRLKVQRYDLKEDSVS----WTHSGGEY--- 375
Query: 226 SEEWLKRMDNNL--ASIKPIMESTYGKDQAVKWT 257
++ + ++ + P + VK+T
Sbjct: 376 ---YISTVMEDVDESLFSPAARGRRNRGTPVKYT 406
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 2e-14
Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 37/242 (15%)
Query: 14 HYELPTSFFKLVLGK-------YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHT 66
+ T + +L + + Y + + + ++ + ++ D
Sbjct: 95 NTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDL 154
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ---------NVEI 117
+D+G G G + L +A + G+ + ++ E R +
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 118 IVADISTFEMEASYDR--IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 175
D + E + + F + LK+ MKE + +
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL-NF 273
Query: 176 HFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDN 235
N D T L + VS W Y +L +D
Sbjct: 274 RINSRNLSDIGTIMRVV--------ELSPLKGSVS----WTGKPVSY------YLHTIDR 315
Query: 236 NL 237
+
Sbjct: 316 TI 317
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.4 bits (169), Expect = 3e-14
Identities = 44/231 (19%), Positives = 64/231 (27%), Gaps = 5/231 (2%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
L VLDVG G G L ++ A K K+ GI S ++ V
Sbjct: 27 HNRHLFKDKVVLDVGSGTGILCMFAA-KAGARKVIGIECSSISDYAVKIVKANKLDHVVT 85
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172
II + E+ I E + +L KW+ D L+F
Sbjct: 86 IIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYV 145
Query: 173 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
A D G M + + V VVD + +
Sbjct: 146 TAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTV 205
Query: 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 283
+L P D Y+ F + G++ E TH
Sbjct: 206 KVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTH 256
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (158), Expect = 9e-13
Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ + VLDVGCG G LS++ A+ K+ G+ S+ + ++ +
Sbjct: 29 QNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTIT 87
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFCHKT 172
+I I + + E + + ++L +K++ + ++
Sbjct: 88 LIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISL 147
Query: 173 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
A + + D G M + + V V+D + + +
Sbjct: 148 VAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTT 207
Query: 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIA-VAELFGYNNGEEWMVTH 283
++L Y+ +F ++ G + TH
Sbjct: 208 SISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTH 259
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (139), Expect = 2e-10
Identities = 36/226 (15%), Positives = 65/226 (28%), Gaps = 7/226 (3%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
VLDVGCG G LS++ A K+ + G+ S + E + ++ +
Sbjct: 39 DKIVLDVGCGTGILSMFAA-KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE 97
Query: 124 TFEMEASYDRIYSIEM----FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED 179
+ I E + +L ++ E L+F
Sbjct: 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ 157
Query: 180 TNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS 239
D+ G L+ + V V+ VN + ++LA
Sbjct: 158 YKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAF 217
Query: 240 IKPIMESTYGKDQAVKWTVYWRTFFIA--VAELFGYNNGEEWMVTH 283
+ +D ++ F A ++ G TH
Sbjct: 218 KSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTH 263
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 54.4 bits (130), Expect = 2e-09
Identities = 13/119 (10%), Positives = 34/119 (28%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109
A + + ++ +L +G G+ ++A + I + + + C
Sbjct: 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE 120
Query: 110 LELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168
E + A+ E + L+K ++K+ +
Sbjct: 121 RENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 54.2 bits (129), Expect = 3e-09
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 9/141 (6%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110
L L + + H VLD+G G G +L + + G+ +K E +
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK 61
Query: 111 ELQNVEIIVADISTFEMEASY-DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
++NV + D I H + + ++++++ +K+D +
Sbjct: 62 GVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH- 120
Query: 170 HKTFAYHFEDTNDDDWITKYF 190
Y ED D+++
Sbjct: 121 -----YAPEDPVLDEFVNHLN 136
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 53.6 bits (127), Expect = 5e-09
Identities = 26/257 (10%), Positives = 74/257 (28%), Gaps = 14/257 (5%)
Query: 12 EQHYELPTS---FFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER----SRLEDG 64
E +Y+ S +F + G+ + +A E L+
Sbjct: 9 EIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQ 68
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADI 122
LD+G G+G + ++ +K+ I + + ++ L + +
Sbjct: 69 AKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 127
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
+ SYD I+S + F H + + ++ ++ +K ++ + + ++
Sbjct: 128 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK---EDGIDKSSI 184
Query: 183 DDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKP 242
+ + L + + + + + + I
Sbjct: 185 QPILDRIKLHDMGSLGLYRSLAKECGLVTL-RTFSRPDSLVHHYSKVKAELIKRSSEIAS 243
Query: 243 IMESTYGKDQAVKWTVY 259
+ + +
Sbjct: 244 FCSPEFQANMKRGLEHW 260
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 53.2 bits (127), Expect = 6e-09
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 112
E + V+D+ G G LSL IA Y K+ I +F+ E + ++
Sbjct: 97 ERVRMAKVAKPDELVVDMFAGIGHLSLPIA-VYGKAKVIAIEKDPYTFKFLVENIHLNKV 155
Query: 113 QN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171
++ + D F E DRI + ++ + K K+ ++ H+ +
Sbjct: 156 EDRMSAYNMDNRDFPGENIADRI----LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPE 211
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 53.0 bits (126), Expect = 1e-08
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL 112
L ++ ++D GCG+G L L + K TGI + +T E R+
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LP 76
Query: 113 QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172
+ E + D + E+ YD HM + +L+K+ +K+ + +
Sbjct: 77 YDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWIS 136
Query: 173 FAYHF 177
+
Sbjct: 137 NMASY 141
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125
LD+GCG G SLY+A + + +E L N++ + D++T
Sbjct: 33 RTLDLGCGNGRNSLYLAANGYDVTA--WDKNPASMANLERIKAAEGLDNLQTDLVDLNTL 90
Query: 126 EMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171
+ YD I S + + + L+ + + K +
Sbjct: 91 TFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDT 138
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 50.6 bits (120), Expect = 3e-08
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 11/129 (8%)
Query: 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102
T + ++ L + +DVGCG G ++ + ++ I +
Sbjct: 17 TAMEVRCLIMCL----AEPGKNDVAVDVGCGTGGVT--LELAGRVRRVYAIDRNPEAIST 70
Query: 103 IEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160
E + L NV ++ D + D ++ + I +K
Sbjct: 71 TEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL---RIIKDKLKPG 127
Query: 161 TLLFVHHFC 169
+ V
Sbjct: 128 GRIIVTAIL 136
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 50.8 bits (120), Expect = 3e-08
Identities = 26/205 (12%), Positives = 57/205 (27%), Gaps = 6/205 (2%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVL 110
L + + L+ VLDV G G ++ A K+ ++ K
Sbjct: 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG 61
Query: 111 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170
Q + + + + H N + + + + +K+ L +
Sbjct: 62 HQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121
Query: 171 KTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWL 230
N + Y S L + + + + ++ H E+W
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE---LHCFHKTFIFEDWC 178
Query: 231 KRMDNNLASIKPIMESTYGKDQAVK 255
RM+ + + + K
Sbjct: 179 DRMNVTTEKKQELSDFIKSKPTEYY 203
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 49.9 bits (119), Expect = 7e-08
Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 36/207 (17%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE--------------- 101
ER+ + V+D+GCG G S Y + ++ G+ E
Sbjct: 60 ERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRL 119
Query: 102 FIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
+ + + ++ DI + + ++ +L + W+ +T
Sbjct: 120 QSGVDVFFIPPERCDTLLCDIGESSPNPTVEAGRTLR----------VLNLVENWLSNNT 169
Query: 162 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM--PSANLLLYFQDDVSVVDHWLVNG 219
FC K + + + G + P + + VS +V+
Sbjct: 170 -----QFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTHEMYWVSNASGNIVSS 224
Query: 220 KHYAQTSEEWLKRMDNNLASIKPIMES 246
S + R K E
Sbjct: 225 V--NMISRMLINRFTM--RHKKATYEP 247
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 45.8 bits (108), Expect = 2e-06
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN 114
R L G +L+VG G G++S YI +T + + + +
Sbjct: 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 137
Query: 115 -VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
V +DI+ F + YD + + + N ++KI+ MK ++ +
Sbjct: 138 NVRTSRSDIADFISDQMYDA-----VIADIPDPWNHVQKIASMMKPGSVATFYLPN 188
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 44.7 bits (104), Expect = 3e-06
Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 15/160 (9%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111
L+ Y + G VL CG +++ + + + + ++ F E +
Sbjct: 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHI 68
Query: 112 LQNVEIIVADISTFEM------------EASYDRIYSIEMFEHMK--NYQNLLKKISKWM 157
+ V E+ Y + + ++ + M
Sbjct: 69 TSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM 128
Query: 158 KED-TLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM 196
+ + L + + + W+ + +
Sbjct: 129 PQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEV 168
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.6 bits (104), Expect = 6e-06
Identities = 39/270 (14%), Positives = 77/270 (28%), Gaps = 31/270 (11%)
Query: 27 GKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86
G+ + Y D + + +L L R H VLDV CG G S+ + ++
Sbjct: 24 GEAARVWQLYIGDTRSRTAEYKAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEEGF 79
Query: 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-------ADISTFEMEASYDRIYSIEM 139
+ + + E R E + ++ D + I
Sbjct: 80 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 139
Query: 140 FEHMKN-------YQNLLKKISKWMKEDTLLFVHHFC------HKTFAYHFEDTNDDDWI 186
F H+ + ++ LK I+ ++ LL + H D
Sbjct: 140 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLT 199
Query: 187 TKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNL------ASI 240
+ T+ + ++ V V +++ + + A
Sbjct: 200 KDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFG 259
Query: 241 KPIMESTYGKDQAVKWT-VYWRTFFIAVAE 269
S G + + Y +FI V +
Sbjct: 260 GRCQHSVLGDFKPYRPGQAYVPCYFIHVLK 289
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 8e-06
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 19/170 (11%)
Query: 27 GKYFKYSCCYFSDASK---TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 83
GKY + + + +++ E +K + + + +L +G G G + L I
Sbjct: 1 GKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILS 60
Query: 84 KYSNC------KITGICNSKTQKE----------FIEEQCRVLELQNVEIIVADISTFEM 127
K + S Q +E + + + +
Sbjct: 61 KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120
Query: 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHF 177
+D I+ I+M ++K+ LK + + + + +
Sbjct: 121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 170
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (102), Expect = 8e-06
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
+ VLD+GCG G + A G+ SK + ++ + +
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ---VTFCVASSH 139
Query: 122 ISTFEMEASYDRIYSIEMFEHMKNYQNLLKK 152
F + S D I I + ++K
Sbjct: 140 RLPFS-DTSMDAIIRIYAPCKAEELARVVKP 169
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.8 bits (103), Expect = 9e-06
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEE---QCRVLE 111
+ G VL+ G G G+L+L + + ++ E C
Sbjct: 89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148
Query: 112 LQNVEIIVADISTFEM-EASYDRIY--SIEMFEHMKNYQNLLKKISKWM 157
N ++V+D++ E+ + S DR + +E + LL M
Sbjct: 149 PDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLM 197
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 15/105 (14%), Positives = 28/105 (26%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L VL +G G+ ++A I + S E + E R + A
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA 113
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
+ + L ++KE + +
Sbjct: 114 SKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVI 158
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 26/214 (12%), Positives = 70/214 (32%), Gaps = 8/214 (3%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
LD+ CG G+L+ + K+ N + + + + + L+ +
Sbjct: 32 VENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91
Query: 118 IVADISTFEMEASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 176
+++++ + S + + K +S +KE + + +
Sbjct: 92 DISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV 151
Query: 177 FEDT----NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
+ +DD+ + + + +F D + + A E+ K
Sbjct: 152 LGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKY 211
Query: 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIA 266
+ + +I ++ Y + K+T R ++
Sbjct: 212 LKHGQLNILDKVDC-YSNKKVEKFT--ERITYLV 242
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 15/119 (12%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 112
++ E ++ +LD+GCG+G + + +A + + + I + + L+
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDN 101
Query: 113 QNVEIIVADISTFEMEASYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHFCH 170
++ ++ +D+ + Y++I + + ++++ + +K++ ++V
Sbjct: 102 YDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 21/146 (14%), Positives = 54/146 (36%)
Query: 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106
AE +E + + VLD+ CG G +L +A++ + + + +
Sbjct: 25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAK 84
Query: 107 CRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166
R L+++ ++ V +I+ + +S M+ ++ + L K+++ +K +
Sbjct: 85 ERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 167 HFCHKTFAYHFEDTNDDDWITKYFFT 192
C ++ +
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 1/121 (0%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
D ++VG G G+ +A++ + GI K+ + ++ + + N++++ D
Sbjct: 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG 90
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
S I + + + +K + + L + HF+ N
Sbjct: 91 SDLTDYFEDGEIDRLYLNFSDPWPKKRHEKR-RLTYKTFLDTFKRILPENGEIHFKTDNR 149
Query: 183 D 183
Sbjct: 150 G 150
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.6 bits (97), Expect = 3e-05
Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 1/120 (0%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCR 108
A + + ++ G +VL +G G+ + +++ KI GI S +
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 109 VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168
+ A E + L+ ++K +
Sbjct: 120 ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.3 bits (95), Expect = 6e-05
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 8/171 (4%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++ VLD+ CG G S + ++ G+ S+ E + E I+
Sbjct: 35 MKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 92
Query: 121 DISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFE 178
+ ++D + I+ H + K++ + +K ++ + +
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 179 DT---NDDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQT 225
++ WI+K QD V + W G
Sbjct: 153 ESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAK 203
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
+L++G G + + + + IT + S+ + + + + I +
Sbjct: 21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFE 74
Query: 124 TFEMEASYDRIYSIEMFEHMKNYQNLLKKI-SKWMKEDTLLFVH 166
++ YD I + EH+ + LLK+I W+ E LF+
Sbjct: 75 DAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 3/130 (2%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
D ++VG G G +A++ + GI K+ ++ + E QNV+++ D
Sbjct: 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA 88
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
T + + + + +K + L K + HF+ N
Sbjct: 89 DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKR-RLTYSHFLKKYEEVMGKGGSIHFKTDNR 147
Query: 183 D--DWITKYF 190
++ K F
Sbjct: 148 GLFEYSLKSF 157
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 37.9 bits (87), Expect = 4e-04
Identities = 11/108 (10%), Positives = 32/108 (29%), Gaps = 3/108 (2%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
+G VLD+ G G L++ + + + N K Q + ++ +
Sbjct: 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA 73
Query: 123 STFEMEA-SYDRIYSIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHH 167
+ ++ + ++ + + E ++
Sbjct: 74 ERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCET 121
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 38.4 bits (88), Expect = 5e-04
Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 10/181 (5%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
R + G +VLD+GCG G L + + + + V
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 118 IVADIS--TFEMEASYDRIYSIEMFEHMKNYQNLLKK----ISKWMKEDTLLFVHHF-CH 170
D ++ +D I S F + + L I++ ++ +
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138
Query: 171 KTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY---FQDDVSVVDHWLVNGKHYAQTSE 227
+ + +D+ +P ++ Y D V+ + V+ +
Sbjct: 139 VILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFK 198
Query: 228 E 228
Sbjct: 199 R 199
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-Q 113
+++G ++D G G G++ +A+ S+ K+ + + E L +
Sbjct: 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 155
Query: 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
V I V DIS E +F + + N + K + +K
Sbjct: 156 RVTIKVRDISEGFDEK-----DVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT 206
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 36.9 bits (84), Expect = 0.001
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 7/135 (5%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ VLDVG G G + IA + + + T + + + V
Sbjct: 75 DAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 134
Query: 117 IIVADISTFEMEAS-YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 175
+ D + + + + ++ +L+ + ++ L V
Sbjct: 135 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV---- 190
Query: 176 HFEDTNDDDWITKYF 190
E D + +
Sbjct: 191 --EGDGADRFFSTLL 203
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.002
Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 44/186 (23%)
Query: 31 KYSCCYFSDASKTLEDAE--KAMLELYCER--SRLEDGHTVLDVGCGWGSLSLYIAQKYS 86
Y Y+S +AE K LE + G T++D+G G + A S
Sbjct: 15 DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVL-AACDS 73
Query: 87 NCKITGICNSKTQKEFIEEQCR-----------------------------------VLE 111
IT + +E +E+ + V
Sbjct: 74 FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKR 133
Query: 112 LQNVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHH 167
+ ++ + + + D + ++ E Y+ L ++ +K L
Sbjct: 134 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193
Query: 168 FCHKTF 173
Sbjct: 194 TLRLPS 199
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 28/184 (15%)
Query: 5 IQTDKAKEQHYEL----PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAM----LELYC 56
+ ++ ++ P + GK + D ++ + +
Sbjct: 32 LNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMIL 91
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-- 113
+ G TVL+ G G G +SL++++ S ++ K + ++ +
Sbjct: 92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151
Query: 114 ---------NVEIIVADISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
NV+ I DIS ++D + M N L +K
Sbjct: 152 LSHVEEWPDNVDFIHKDISGATEDIKSLTFDA-----VALDMLNPHVTLPVFYPHLKHGG 206
Query: 162 LLFV 165
+ V
Sbjct: 207 VCAV 210
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.97 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.91 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.9 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.86 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.85 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.85 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.84 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.81 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.8 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.8 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.8 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.78 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.78 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.78 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.77 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.75 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.74 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.73 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.72 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.72 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.72 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.71 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.71 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.69 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.69 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.68 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.68 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.67 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.67 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.66 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.65 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.63 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.63 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.62 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.59 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.58 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.57 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.56 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.55 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.55 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.54 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.52 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.52 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.52 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.5 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.46 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.44 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.44 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.42 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.39 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.39 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.36 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.35 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.34 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.33 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.29 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.28 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.28 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.26 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.18 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.17 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.15 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.15 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.15 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.14 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.13 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 99.04 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.03 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.02 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.97 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.96 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.94 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.92 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.91 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.89 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.87 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.84 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.83 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.83 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.82 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.79 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.75 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.67 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.6 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.59 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.53 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.34 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.3 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.07 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.73 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.59 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.5 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.5 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.49 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.39 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.32 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.3 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.26 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.2 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.19 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.16 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.16 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.98 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.76 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.74 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.68 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.67 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.61 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.43 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.36 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.36 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.35 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.32 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.32 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.3 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.29 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.18 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.15 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.11 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.07 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.98 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.93 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.86 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.84 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.76 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.63 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.57 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.33 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.99 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.89 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.73 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.33 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.14 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.66 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.62 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.61 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.58 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 93.58 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.2 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.67 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.61 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.6 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.36 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.15 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.44 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.7 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.68 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.48 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.24 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.23 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.8 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.52 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 88.4 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.32 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.05 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.02 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.79 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.69 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.67 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.66 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.63 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 87.62 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.61 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 87.52 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.14 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 87.09 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 86.89 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 86.8 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.73 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 86.55 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 86.44 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.32 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 86.29 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.16 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 84.51 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 84.04 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 83.94 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 83.84 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 83.24 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 82.71 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 81.7 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.66 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 81.63 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 81.09 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.15 |
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.9e-51 Score=351.36 Aligned_cols=268 Identities=25% Similarity=0.428 Sum_probs=234.2
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022864 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 85 (291)
++.++|++|||++++||+.|+|++|+|||++|+.+..+++++|.++++.+++++++++|.+|||||||+|.+++++++++
T Consensus 4 ~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~ 83 (291)
T d1kpia_ 4 PPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY 83 (291)
T ss_dssp CCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred CcHhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccccc---------HHHHHHHHHh
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMKN---------YQNLLKKISK 155 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~---------~~~~l~~~~~ 155 (291)
+++|+|+++|+++++.++++++..++ .++.+...|.... +++||.|+|..+++|+.+ ++.+++++.+
T Consensus 84 -g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~ 160 (291)
T d1kpia_ 84 -DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYN 160 (291)
T ss_dssp -CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHH
T ss_pred -CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHH
Confidence 78999999999999999999999888 4688888887543 378999999999999854 6899999999
Q ss_pred ccccCeeEEEEeeccCCcccccc--------cCCccchhhhhccCCCCCCcHHHHHHhhc--CcEEEEeeecCCCcHHHH
Q 022864 156 WMKEDTLLFVHHFCHKTFAYHFE--------DTNDDDWITKYFFTGGTMPSANLLLYFQD--DVSVVDHWLVNGKHYAQT 225 (291)
Q Consensus 156 ~LkpgG~l~~~~~~~~~~~~~~~--------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~y~~t 225 (291)
+|||||++++++++.+..+.... ......|+.+|+||++.+|+...+....+ ++. +..|.+.+.||.+|
T Consensus 161 ~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~-v~~~~~~~~hYa~T 239 (291)
T d1kpia_ 161 LTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWK-VERYHRIGANYVPT 239 (291)
T ss_dssp TSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCE-EEEEEECGGGHHHH
T ss_pred hCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccc-cceeeeccccHHHH
Confidence 99999999999998765432111 01234699999999999999887776654 344 45577789999999
Q ss_pred HHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022864 226 SEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 226 l~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
+..|+++|.++..++.++ ++ .++++.|+.|+.+|+++|+.|+ +++.||+++|
T Consensus 240 L~~W~~~f~~~~~ei~~l----~g----~~~~r~W~~yl~~ce~~F~~~~---~~v~q~~l~K 291 (291)
T d1kpia_ 240 LNAWADALQAHKDEAIAL----KG----QETCDIYMHYLRGCSDLFRDKY---TDVCQFTLVK 291 (291)
T ss_dssp HHHHHHHHHHTHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHTTS---SEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHh----cC----hHHHHHHHHHHHHHHHHHHCCC---CeEEEEEEEC
Confidence 999999999999998876 33 4689999999999999999988 5799999987
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.9e-51 Score=351.53 Aligned_cols=269 Identities=25% Similarity=0.440 Sum_probs=235.5
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022864 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 84 (291)
..+.+.|++|||++++||+.+||++|+||||+|+.+..+++++|.++++.+++++++++|.+|||||||+|.++.+++++
T Consensus 4 ~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~ 83 (285)
T d1kpga_ 4 KPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK 83 (285)
T ss_dssp CCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred CccHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022864 85 YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG 161 (291)
+ +++|+|+++|+++++.+++++.+.++ +++++..+|+.+++ ++||.|++..+++|+ ++...+++++.++|||||
T Consensus 84 ~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG 160 (285)
T d1kpga_ 84 Y-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADG 160 (285)
T ss_dssp H-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC
T ss_pred C-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCC
Confidence 7 89999999999999999999988887 58999999998765 789999999999999 567899999999999999
Q ss_pred eEEEEeeccCCcccc--------cccCCccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHHHHHHHH
Q 022864 162 LLFVHHFCHKTFAYH--------FEDTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLK 231 (291)
Q Consensus 162 ~l~~~~~~~~~~~~~--------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~tl~~w~~ 231 (291)
++++++++....+.. ........|+.+|+||++.+|+...+.... .++.+ ..+...+.||.+|+..|.+
T Consensus 161 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v-~~~~~~~~hYarTl~~W~~ 239 (285)
T d1kpga_ 161 VMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTV-TRVQSLQPHYAKTLDLWSA 239 (285)
T ss_dssp EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEE-EEEEECHHHHHHHHHHHHH
T ss_pred cEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhh-cccccchhhHHHHHHHHHH
Confidence 999998875332211 111223479999999999999988776543 34555 4456678999999999999
Q ss_pred HHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022864 232 RMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
+|.++..++.++ ++ +.++++|+.|+.+|+++|+.|+ +++.||+++|
T Consensus 240 ~f~~~~~ei~~~----~~----~~~~rrw~~Yl~~c~~~F~~g~---~~v~q~~~~k 285 (285)
T d1kpga_ 240 ALQANKGQAIAL----QS----EEVYERYMKYLTGCAEMFRIGY---IDVNQFTCQK 285 (285)
T ss_dssp HHHHTHHHHHHH----SC----HHHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEC
T ss_pred HHHHHHHHHHHh----cC----HHHHHHHHHHHHHHHHHHHCCC---CeEEEEEEEC
Confidence 999999998776 44 4688999999999999999988 7899999997
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=9e-51 Score=347.44 Aligned_cols=263 Identities=24% Similarity=0.417 Sum_probs=226.7
Q ss_pred HhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEE
Q 022864 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 91 (291)
Q Consensus 12 ~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~ 91 (291)
+.|||++++||+.|||++|+|||++|+++..+++++|.++++.++++++++++.+|||||||+|.++.++++++ +++|+
T Consensus 1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~ 79 (280)
T d2fk8a1 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVI 79 (280)
T ss_dssp GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEE
T ss_pred CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999876 78999
Q ss_pred EEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022864 92 GICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 92 ~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|+|+++++.+++++++.++ .++.+...|..+++ ++||.|++..+++|+ ++...+++++.++|||||+++++++
T Consensus 80 gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 80 GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp EEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 999999999999999999988 46788888877654 789999999999999 5668999999999999999999876
Q ss_pred ccCCcccc--------cccCCccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHHHHHHHHHHHhcHH
Q 022864 169 CHKTFAYH--------FEDTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238 (291)
Q Consensus 169 ~~~~~~~~--------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~ 238 (291)
........ ........|+.+|+||++.+|+...+.... .++.+. .+.+.+.||++||+.|+++|.++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~-~~~~~~~hYa~TL~~W~~~f~~~~~ 236 (280)
T d2fk8a1 158 VSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVP-EPLSLRPHYIKTLRIWGDTLQSNKD 236 (280)
T ss_dssp ECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCC-CCEECHHHHHHHHHHHHHHHHHTHH
T ss_pred eccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhccccc-eeeecccCHHHHHHHHHHHHHHHHH
Confidence 54332110 011123479999999999999988776653 344443 3455678999999999999999999
Q ss_pred hHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
++.++ ++ +.++++|+.|+.+|+.+|+.|. +++.|++++||
T Consensus 237 ~i~~~----~~----~~~~r~w~~yl~~c~~~F~~~~---~~~~q~~~~kp 276 (280)
T d2fk8a1 237 KAIEV----TS----EEVYNRYMKYLRGCEHYFTDEM---LDCSLVTYLKP 276 (280)
T ss_dssp HHHHH----SC----HHHHHHHHHHHHHHHHHHHTTS---CEEEEEEEECT
T ss_pred HHHHh----cC----HHHHHHHHHHHHHHHHHHhCCC---ccEEEEEEEcC
Confidence 88765 33 3688999999999999999987 78999999999
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.97 E-value=7.9e-29 Score=211.89 Aligned_cols=263 Identities=14% Similarity=0.164 Sum_probs=182.1
Q ss_pred chhHHHhhcCC--ChHHHHHhh-CCCCCccccccCCC--CCCHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCcchH
Q 022864 7 TDKAKEQHYEL--PTSFFKLVL-GKYFKYSCCYFSDA--SKTLEDAEKAMLELYCER----SRLEDGHTVLDVGCGWGSL 77 (291)
Q Consensus 7 ~~~~~~~~yd~--~~~~~~~~~-~~~~~y~~~~~~~~--~~~l~~~~~~~~~~~~~~----~~~~~~~~vLDiGcG~G~~ 77 (291)
.+...+.|||. .+.||+..| ++.+|+ |+|..+ ...+.+++.+..+.+++. .+++++.+|||||||+|.+
T Consensus 4 ~~~~~~~~y~~~~~~~fy~~~w~g~~~h~--G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~ 81 (282)
T d2o57a1 4 VKDNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGA 81 (282)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHH
T ss_pred HHHHHHHhcCCchhHHHHHHHcCCCCcee--eecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHH
Confidence 34567889998 689998877 566776 888754 356777776665555444 4678999999999999999
Q ss_pred HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHh
Q 022864 78 SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 78 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~ 155 (291)
+..+++++ +++|+|+|+|+.+++.++++....|+ ++++++++|+.+++.+ ++||+|+|..+++|++++..+++++.+
T Consensus 82 ~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~ 160 (282)
T d2o57a1 82 ARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECAR 160 (282)
T ss_dssp HHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred HhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHHHHHHH
Confidence 99999876 78999999999999999999999988 4899999999999876 899999999999999999999999999
Q ss_pred ccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-h-hcCcEEEEeeecCCCcHHHHHHHHHHHH
Q 022864 156 WMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKHYAQTSEEWLKRM 233 (291)
Q Consensus 156 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~y~~tl~~w~~~l 233 (291)
+|||||++++.++......... ....+......+. +++...... + ..++..+... ....++..++..|...+
T Consensus 161 ~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~s~~~~~~~l~~~Gf~~i~~~-d~~~~~~~~~~~~~~~~ 234 (282)
T d2o57a1 161 VLKPRGVMAITDPMKEDGIDKS---SIQPILDRIKLHD--MGSLGLYRSLAKECGLVTLRTF-SRPDSLVHHYSKVKAEL 234 (282)
T ss_dssp HEEEEEEEEEEEEEECTTCCGG---GGHHHHHHHTCSS--CCCHHHHHHHHHHTTEEEEEEE-ECHHHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEEeecCCCCchh---HHHHHHHHhccCC--CCCHHHHHHHHHHcCCceEEEE-ECcHhHHHHHHHHHHHH
Confidence 9999999999887655432211 1122333322222 233333222 2 2344444322 22234556666777766
Q ss_pred HhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 234 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
..+..++... ...+. +..+...+..+.+....|. +.-..|++|||
T Consensus 235 ~~~~~~~~~~----~~~e~----~~~~~~~~~~~~~~~~~g~---~~~g~~varK~ 279 (282)
T d2o57a1 235 IKRSSEIASF----CSPEF----QANMKRGLEHWIEGGRAGK---LTWGGMLFRKS 279 (282)
T ss_dssp HHTHHHHTTT----SCHHH----HHHHHHHHHHHHHHHHTTS---EEEEEEEEEES
T ss_pred HHHHHHHHhh----cCHHH----HHHHHHHHHHHHHHHhCCe---eEEEEEEEEcC
Confidence 6655444332 23222 2222222333334444444 66678889998
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=6.1e-24 Score=176.34 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=111.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
..++.+++.++++|+.+|||||||+|.++..++++ +.+|+|||+|+.|++.|++++...+++++.++++|+++++++
T Consensus 3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence 34567888889999999999999999999999987 579999999999999999999999888899999999998876
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
++||+|+|..+++|++++..+++++.++|||||++++.+.....
T Consensus 81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 89999999999999999999999999999999999998765543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.90 E-value=8.9e-24 Score=174.72 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=108.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
+..+++.++++++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++...+.+++.++++|+++++++ ++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 456777888999999999999999999999987 679999999999999999999998888999999999998866 89
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
||+|+|..+++|++++..+++++.++|||||++++.++..+.
T Consensus 82 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 123 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPE 123 (231)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCS
T ss_pred cccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCC
Confidence 999999999999999999999999999999999998776543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.2e-23 Score=174.15 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=113.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
..+++.+.+.+.+.|+.+|||||||+|..+..+++.. +++|+|||+|+.|++.+++++...|+ ++++++.+|+.++..
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~ 97 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 97 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc
Confidence 5677888899999999999999999999999999876 68999999999999999999999988 469999999999865
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
+++||+|+|..+++|++++..++++++++|||||++++..+.....+
T Consensus 98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~ 144 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP 144 (245)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCC
Confidence 68999999999999999999999999999999999999887665443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=3.4e-21 Score=158.13 Aligned_cols=120 Identities=21% Similarity=0.336 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
.....+..++.+. ++++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|++++...+. ++.++.+|+.+++
T Consensus 22 ~~~~~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~ 97 (226)
T d1ve3a1 22 SRIETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLS 97 (226)
T ss_dssp HHHHHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCC
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-ccccccccccccc
Confidence 3344455566552 356789999999999999999976 78999999999999999999888775 6889999999988
Q ss_pred cC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 ME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+ ++||+|+|..+++|++ +..++++++.++|||||++++..++.
T Consensus 98 ~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 98 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred ccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 76 8999999999999985 67789999999999999999987754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=2.2e-21 Score=162.16 Aligned_cols=119 Identities=15% Similarity=0.326 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...+..++......++.+|||||||+|..+..++++ +.+|+|||+|+.|++.|++++...++ ++.++++|+++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~ 103 (251)
T d1wzna1 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK 103 (251)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-cchheehhhhhcccc
Confidence 335666777777788889999999999999999987 77999999999999999999988877 799999999999887
Q ss_pred CCccEEEEc-cccccc--ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSI-EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~-~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|+|. .+++|+ ++...+++++.++|||||++++..++.
T Consensus 104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 899999996 577776 567789999999999999999977653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=9.2e-23 Score=167.82 Aligned_cols=110 Identities=12% Similarity=0.152 Sum_probs=96.5
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
...++.+|||||||+|.++..+++.. ..+|+|||+|++|++.|++++...+.++++++++|+++++.+ ++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 45677899999999999999987665 568999999999999999998877777789999999998765 8999999999
Q ss_pred cccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022864 139 MFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++|+++. .+++++++++|||||.+++.+...
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~ 169 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 169 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence 99999654 579999999999999999987644
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.85 E-value=3.4e-21 Score=160.74 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.+..++.... .++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.|+++++..+. ++.++++|+.+++.+++
T Consensus 26 ~~~~~~~~~~-~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~ 101 (246)
T d1y8ca_ 26 FIIEKCVENN-LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRK 101 (246)
T ss_dssp HHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCC
T ss_pred HHHHHHHHhC-CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc-cceeeccchhhhccccc
Confidence 3444444433 44679999999999999999987 67999999999999999999988887 79999999999887789
Q ss_pred ccEEEEc-cccccc---ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSI-EMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~-~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|+|. .+++++ .+..++++++.++|||||.+++...+.
T Consensus 102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 9999986 577776 466779999999999999999876543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=2.3e-20 Score=150.61 Aligned_cols=108 Identities=20% Similarity=0.319 Sum_probs=97.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.+++++...+++++.+...|+.+..++++||+|+|..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 334459999999999999999987 789999999999999999999999988899999999998877999999999999
Q ss_pred cccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 141 EHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|++ +..++++++.++|+|||++++..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9994 45689999999999999999877643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.83 E-value=3.2e-20 Score=157.78 Aligned_cols=119 Identities=21% Similarity=0.350 Sum_probs=104.2
Q ss_pred HHHHHHHHc-CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 51 MLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.+..+++.+ ...++.+|||+|||+|.++..+++..| +.+|+|+|+|+.+++.|++++...+. +++|.++|+.+++.+
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~ 92 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN 92 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS
T ss_pred HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccccc
Confidence 344555543 456778999999999999999998765 57999999999999999999988776 799999999998777
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|+|..+++|++++..+++++.++|||||.+++.++..
T Consensus 93 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 134 (281)
T d2gh1a1 93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 134 (281)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence 889999999999999999999999999999999999988653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.81 E-value=2.7e-19 Score=143.64 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=99.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------CCeEEEE
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------QNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~ 119 (291)
+...+..+..+++.+|||+|||+|..+.+|+++ |.+|+|+|+|+.|++.|+++++..+. .++.+..
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 344566678889999999999999999999998 89999999999999999998754321 2468899
Q ss_pred ccccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 120 ADISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+|+.+++.. ..||+|++..+++++. +....++++.++|||||.+++......
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 999887644 7899999999999984 467899999999999999988766543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.80 E-value=1.6e-19 Score=151.09 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
..........+++.+...++.+|||+|||+|.++..++..+ ..+|++||+|+.+++.|+++... .++++++++|+.+
T Consensus 75 ~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 75 HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMET 151 (254)
T ss_dssp HHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGG
T ss_pred chhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccc--cccceeEEccccc
Confidence 34445556677888887888999999999999999888765 56899999999999999877643 3468999999999
Q ss_pred CccC-CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeec
Q 022864 125 FEME-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++++ ++||+|++..+++|+++. .++++++.+.|||||.+++..+.
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence 8776 889999999999999654 58899999999999999997654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.80 E-value=1.1e-19 Score=149.49 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.++++.. +++.++.+|+.+.+++++||+|+|..+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~~~fD~I~~~~vle 92 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLE 92 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc----cccccccccccccccccccccccccceeE
Confidence 34669999999999999999877 6789999999999999876532 37999999999988779999999999999
Q ss_pred ccccHHHHHHHHH-hccccCeeEEEEeeccC
Q 022864 142 HMKNYQNLLKKIS-KWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 142 ~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~ 171 (291)
|++++..++.++. ++|||||.+++..|+..
T Consensus 93 h~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 93 HIDDPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred ecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 9999999999998 78999999999988654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.8e-19 Score=149.64 Aligned_cols=112 Identities=18% Similarity=0.339 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
..+..++... ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++ +. ..++.+|+++++.+
T Consensus 30 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~----~~--~~~~~~~~~~l~~~~ 100 (246)
T d2avna1 30 RLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREK----GV--KNVVEAKAEDLPFPS 100 (246)
T ss_dssp HHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHH----TC--SCEEECCTTSCCSCT
T ss_pred HHHHHHHHHh-cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccc----cc--ccccccccccccccc
Confidence 3444444443 346779999999999999999976 78999999999999988864 22 23678999998876
Q ss_pred CCccEEEEc-ccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSI-EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~-~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||+|+|. .+++|++++.++++++.++|||||.+++..++.
T Consensus 101 ~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 899999985 689999999999999999999999999988753
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.80 E-value=3.1e-19 Score=146.70 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=96.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
.+++.+|||+|||+|..+..+++.. |+++|+|+|+|+.|++.|+++++..+. .++.+..+|+.+.+. ..+|+|+|.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEe
Confidence 4678899999999999999999753 688999999999999999999887665 468888888887654 678999999
Q ss_pred cccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 138 EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 138 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.+++++ ++..+++++++++|||||.+++.++....
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence 999998 57889999999999999999998776543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.78 E-value=6.7e-19 Score=147.18 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=93.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~D~i~~~ 137 (291)
.+++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|++++...+. .++.+.++|+...+. .++||+|+|.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 4678899999999999999998773 46899999999999999999887665 379999999976554 3789999999
Q ss_pred cccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 138 EMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 138 ~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+++|+ .+...+++++.++|||||++++..++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 999998 345689999999999999999987753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.78 E-value=7.4e-19 Score=140.16 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=99.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-C
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~ 129 (291)
...++.++...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++++..++ ++++++++|+.+...+ .
T Consensus 22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHHHhcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 345667788899999999999999999999876 66999999999999999999999998 5899999999887655 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.||+|++....+ +...+++.+.+.|||||++++....
T Consensus 100 ~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 100 DIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp CEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeec
Confidence 999999987664 4567899999999999999886653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=3.5e-19 Score=148.22 Aligned_cols=131 Identities=14% Similarity=0.134 Sum_probs=98.8
Q ss_pred HHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHH
Q 022864 22 FKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE 101 (291)
Q Consensus 22 ~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~ 101 (291)
....+++.|.+++|..+. ..-.+..+.+. .+++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++
T Consensus 89 ~~i~i~pg~aFGTG~H~T--------T~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~ 156 (254)
T d2nxca1 89 IPLVIEPGMAFGTGHHET--------TRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLP 156 (254)
T ss_dssp EEEECCCC-----CCSHH--------HHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHH
T ss_pred eEEEEccccccCccccch--------hhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHH
Confidence 445667777776665542 12233333322 357899999999999999988865 789999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 102 FIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 102 ~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.|++|++.+++ ++.++++|+.+....++||+|+++...+ ....+++.+.++|||||+++++.+
T Consensus 157 ~A~~na~~n~~-~~~~~~~d~~~~~~~~~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 157 QAEANAKRNGV-RPRFLEGSLEAALPFGPFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp HHHHHHHHTTC-CCEEEESCHHHHGGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHcCC-ceeEEeccccccccccccchhhhccccc---cHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999998 6789999988754448999999975553 456788999999999999998765
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=1.8e-18 Score=138.80 Aligned_cols=113 Identities=15% Similarity=0.329 Sum_probs=97.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCccCCCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEMEASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~ 131 (291)
.+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++.++++ ++++..+|+.+...+++|
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f 120 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence 3566778888999999999999999999976 569999999999999999999988874 589999999875444899
Q ss_pred cEEEEccccccccc-HHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKN-YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|+++.++++..+ ...+++.+.+.|||||.+++...
T Consensus 121 D~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 99999999987755 47899999999999999887543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.77 E-value=2.6e-18 Score=143.66 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=101.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
.+.+++.++..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+.. +.+
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-~~~ 146 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-PRK 146 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SSC
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-ccc
Confidence 35666777888889999999999999999999999999999998 6789999999998887 58999999987743 367
Q ss_pred ccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|++..++|++++. .++|++++++|||||++++.+..
T Consensus 147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999999999654 57899999999999999987653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=2.2e-18 Score=139.73 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++.+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.++++|+++++.+ ++||+|+|..++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTI 101 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------cccccccccccccccccccccccccccc
Confidence 345689999999999887763 468999999999988763 689999999998776 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+|++++..+++++.++|+|||.+++.+++..
T Consensus 102 ~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 102 CFVDDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp GGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred ccccccccchhhhhhcCCCCceEEEEecCCc
Confidence 9999999999999999999999999988654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.2e-17 Score=137.37 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----------------CCCe
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----------------LQNV 115 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------------~~~v 115 (291)
+.+.+.+...++.+|||+|||+|..+..|+++ |.+|+|||+|+.+++.++++....+ ..++
T Consensus 35 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 112 (229)
T d2bzga1 35 KHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI 112 (229)
T ss_dssp HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence 33444456778899999999999999999987 8899999999999998887654321 1368
Q ss_pred EEEEccccCCccC--CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 116 EIIVADISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 116 ~~~~~d~~~~~~~--~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++.++|+.++... +.||+|+...+++++ .+...+++.+.++|||||.+++..+...
T Consensus 113 ~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 113 SLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp EEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred EEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 9999999987644 789999999999999 5678899999999999999888777653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=7e-18 Score=137.13 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.++..+++.++++++.+|||||||+|..+..+++.. +..+|+++|+++++++.++++++..+++++.++++|..+..+.
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~ 141 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence 445667888899999999999999999999999864 5679999999999999999999999998999999999876554
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++||+|++..+++++++ .+.+.|||||+|++..
T Consensus 142 ~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 FSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred ccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 78999999999988863 4667899999998854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.6e-17 Score=139.94 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
..+...+...+ ..++.+|||+|||+|.++..+++.+|+.+++|+|+|+.+++.|+++ .+++.+.++|+.+++.+
T Consensus 71 ~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~ 144 (268)
T d1p91a_ 71 DAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS 144 (268)
T ss_dssp HHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC
T ss_pred HHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCC
Confidence 33334444444 3457799999999999999999998899999999999999887754 24799999999999877
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
++||+|++..++++ ++++.++|||||.+++.+++....
T Consensus 145 ~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 145 DTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp TTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred CCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcch
Confidence 89999999888766 456889999999999999876543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=1.1e-17 Score=138.49 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=94.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 129 (291)
...++.++++.||.+|||+|||+|.++..+++. .|..+|+++|.++++++.|+++++..+. .++++..+|+.+...+.
T Consensus 74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 456778889999999999999999999999976 4678999999999999999999987644 68999999999876568
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.||.|++ +++++..+++.+.++|||||++++..|+
T Consensus 154 ~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp CEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred eeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence 8999987 4567788999999999999999987664
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=1.7e-17 Score=138.20 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTF 125 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~ 125 (291)
.....++..+++.||.+|||+|||+|.++..|++. .|..+|+++|+++++++.|+++++... .+++.++++|+.+.
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 34667888899999999999999999999999987 578899999999999999999987642 36899999999987
Q ss_pred ccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 126 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
..+ +.||.|++ +++++..+++.+.++|||||++++..|+.
T Consensus 163 ~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred cccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 665 88999986 57888999999999999999999877764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.72 E-value=3.7e-17 Score=136.62 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=99.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 131 (291)
..+++.++..+..+|||||||+|.++..+++++|+.+++++|+ +++++.+++++...++ +++.++.+|+.+. .+..+
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~p~~~ 148 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTA 148 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCE
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-ccccc
Confidence 4566666777888999999999999999999999999999998 8899999999988887 5799999998873 34679
Q ss_pred cEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeec
Q 022864 132 DRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+|++..++|++++ ..++|+++++.|||||+++|.+..
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 99999999999954 457899999999999999987753
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=3.1e-17 Score=131.99 Aligned_cols=105 Identities=22% Similarity=0.227 Sum_probs=93.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~~~~ 139 (291)
++..|||||||+|.++..+|+.+|+..++|+|+++.++..+.+++++.+++|+.++.+|+..+. .+ +++|.|++..+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 3458999999999999999999999999999999999999999999999999999999998754 23 88999999988
Q ss_pred ccccccH--------HHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHMKNY--------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+.+.. ..+++.+.++|||||.|++.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8776432 579999999999999999875
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.5e-18 Score=148.87 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC-
Q 022864 41 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL- 112 (291)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~- 112 (291)
...+.+.+...+..+++.+.+.++.+|||||||+|.++..+++..+..+++|||+|+.+++.|+++.+.. |.
T Consensus 129 ~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 129 PEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp TTCCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCchhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4455566677888999999999999999999999999999998886678999999999999998765542 33
Q ss_pred -CCeEEEEccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 113 -QNVEIIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 -~~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++.++++|+.+.+.. ..+|+|+++. +.+.++....+.++.+.|||||++++..
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCceEEEECcccccccccccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 4799999999987654 2357777654 5567888999999999999999988743
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.71 E-value=2.4e-17 Score=135.17 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=95.3
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i 134 (291)
+.+.++|+.+|||+|||+|..+..++...|+..|+|+|+|+.|++.+++++... +++..+.+|....... ..+|++
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeE
Confidence 455788999999999999999999999888889999999999999998876554 4788888888876433 567888
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++...+++..+...++.++.+.|||||.+++....
T Consensus 146 ~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 146 VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence 88888888888999999999999999999887643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=5.7e-17 Score=131.14 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=90.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C---CccE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A---SYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~---~~D~ 133 (291)
.++++|+.+|||+|||+|..+..+++..|..+|+|+|+|+.+++.++++++..+ ++.++.+|+...... . .+|+
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence 467889999999999999999999998877899999999999999999987764 899999999886543 3 3444
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+ ..+.+..+...+++++.+.|||||.+++....
T Consensus 129 v~--~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 129 IY--QDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EE--ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EE--ecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 43 34666677889999999999999999987653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=5.1e-17 Score=138.47 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=88.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC----CeEEEEccccCC----ccC
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----NVEIIVADISTF----EME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~----~~~ 128 (291)
+.+...++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++.|+++....+.. +..+..+++... +..
T Consensus 50 ~~l~~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (292)
T d1xvaa_ 50 GLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAG 127 (292)
T ss_dssp HHHHHTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCT
T ss_pred HHhhhcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCC
Confidence 3334456789999999999999999987 789999999999999999988776542 345556666442 233
Q ss_pred CCccEEEEcc-cccccc-------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIE-MFEHMK-------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~-~l~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+||+|+|.. +++|++ +...+++++.++|||||+|++...+.
T Consensus 128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 7899999864 788874 36779999999999999999977643
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1.1e-16 Score=133.93 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 128 (291)
....++.++++.|+.+|||+|||+|.++..+++.. |+.+|+++|+++++++.|+++++..++ +++.+...|+......
T Consensus 91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 45677888999999999999999999999999874 678999999999999999999999987 5788988887664334
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
..+|.|+. +++++..+++++.++|||||++++..|+
T Consensus 171 ~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 171 KDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp CSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred cceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence 77888764 6788899999999999999999987764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-17 Score=139.74 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=102.1
Q ss_pred ChHHHHHhhCCCCCccccccCCCCCCHHHH--HHHHHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEE
Q 022864 18 PTSFFKLVLGKYFKYSCCYFSDASKTLEDA--EKAMLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI 93 (291)
Q Consensus 18 ~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~--~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~v 93 (291)
+.++|+.++++. .|...+|.......... ..-.+..+.+.+ ...++.+|||||||+|.++..++... ..+|+|+
T Consensus 3 ~~~~y~~~f~~~-~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~gi 80 (257)
T d2a14a1 3 GGDEYQKHFLPR-DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS-FQDITLS 80 (257)
T ss_dssp CHHHHHHHCCHH-HHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEE
T ss_pred CcchHHhhcChH-HHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccc-cCcEEEe
Confidence 567777777763 55555665544333322 222233343333 23567899999999999988877663 4579999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-----------------------------e-EEEEccccC----CccC-CCccEEEEcc
Q 022864 94 CNSKTQKEFIEEQCRVLELQN-----------------------------V-EIIVADIST----FEME-ASYDRIYSIE 138 (291)
Q Consensus 94 D~s~~~~~~a~~~~~~~~~~~-----------------------------v-~~~~~d~~~----~~~~-~~~D~i~~~~ 138 (291)
|+|+.+++.|+++++...... + .....+... .+.+ ++||+|++..
T Consensus 81 D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 160 (257)
T d2a14a1 81 DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL 160 (257)
T ss_dssp ESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES
T ss_pred cCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehh
Confidence 999999999999887554310 0 111111111 1222 7899999999
Q ss_pred cccccc----cHHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++|+. ++..+++++.++|||||.+++.++.
T Consensus 161 ~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 161 AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 999983 6778999999999999999998764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.68 E-value=3.6e-16 Score=125.69 Aligned_cols=105 Identities=19% Similarity=0.292 Sum_probs=93.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~~~~ 139 (291)
....|||||||+|.++..+|+.+|...++|+|+++.++..+.+++...+++|+.++.+|+.++. .+ .++|.|++..+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 3458999999999999999999999999999999999999999999999999999999998864 23 78999999887
Q ss_pred cccccc--------HHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHMKN--------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
-.+.+. ...+++.+.++|||||.|++.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 766543 2679999999999999998865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3e-17 Score=135.00 Aligned_cols=114 Identities=12% Similarity=0.066 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~ 127 (291)
..+..+.+.+. .++.+|||||||+|..+..+++.. +.+|+|||+|+.+++.|+++++..+. ++.++..|+.... .
T Consensus 41 ~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 117 (229)
T d1zx0a1 41 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTL 117 (229)
T ss_dssp HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGS
T ss_pred HHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhccc-cccccccccccccccc
Confidence 34444444443 568899999999999999999764 57899999999999999998876654 6788888776542 2
Q ss_pred C-CCccEEEE-----cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 128 E-ASYDRIYS-----IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~i~~-----~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+ ++||.|+. ...++|+.+...+++++.++|||||+|++.
T Consensus 118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 2 78888874 567777888999999999999999998763
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.9e-16 Score=132.04 Aligned_cols=128 Identities=19% Similarity=0.193 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHH----CCC--CEEEEEcCCHHHHHHHHHHHHHhC-CCCe
Q 022864 44 LEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQK----YSN--CKITGICNSKTQKEFIEEQCRVLE-LQNV 115 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~----~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~v 115 (291)
+.+.....+..++.++. .++..+|||||||+|.++..+++. +++ .+++|||+|+.|++.+++++.... ++++
T Consensus 20 ~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~ 99 (280)
T d1jqea_ 20 MQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENV 99 (280)
T ss_dssp HHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTE
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccc
Confidence 33333444555555443 345568999999999998877654 333 468999999999999999876532 2344
Q ss_pred --EEEEccccCC------c-cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 116 --EIIVADISTF------E-MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 116 --~~~~~d~~~~------~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.+...+++++ . .+.+||+|+|..+++|++++..+++++.++|+|||.+++..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 100 KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp EEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred cccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 4445544332 1 227899999999999999999999999999999999999877543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=8e-16 Score=125.61 Aligned_cols=112 Identities=24% Similarity=0.193 Sum_probs=93.4
Q ss_pred HHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccc
Q 022864 51 MLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADI 122 (291)
Q Consensus 51 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~ 122 (291)
+...+++.+ ..+++.+|||||||+|..+..+++. .+..+|+++|+++++++.|++++++.++ .++.++.+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 345566666 6689999999999999999999876 3567999999999999999999987654 4789999999
Q ss_pred cCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 123 STFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
....++ ++||+|++..+++++++ .+.+.|||||++++...
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred ccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence 876555 89999999999988753 46789999999988543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.2e-15 Score=127.57 Aligned_cols=116 Identities=17% Similarity=0.311 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.++..+.... ..+.+|||+|||+|..++.++...|..+|+++|+|+.+++.|++|+...+++++.++++|+.+.....+
T Consensus 97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~ 175 (274)
T d2b3ta1 97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ 175 (274)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCc
Confidence 3444445443 456799999999999999999999999999999999999999999999999889999999988544479
Q ss_pred ccEEEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
||+|+|+.++-.. ..+.+++..+.+.|+|||.+++..
T Consensus 176 fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 176 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred eeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999876321 124668899999999999999854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.3e-16 Score=131.74 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhC-----------CCCeEEE
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-----------LQNVEII 118 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------~~~v~~~ 118 (291)
....++..+++.||.+|||+|||+|.++..|++. .|..+|+++|+++++++.|+++++..+ .+++++.
T Consensus 86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 3567788889999999999999999999999986 467899999999999999999987642 2579999
Q ss_pred EccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 119 VADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 119 ~~d~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+|+.+.... ..||.|++ .++++..++.++.++|||||++++..|+.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 9999876432 67999986 45677789999999999999999877654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.63 E-value=1.5e-15 Score=123.40 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
+...+++.+.++++.+|||||||+|.++..|++. ..+|+++|+++..++.|+++... ..++.++.+|.....+. +
T Consensus 58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~~~ 133 (224)
T d1vbfa_ 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEEEK 133 (224)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGGGC
T ss_pred hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc--ccccccccCchhhcchhhh
Confidence 3445778889999999999999999999999987 67999999999999999887654 35899999998774444 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+||+|++..+.+++++ .+.+.|||||+|++..
T Consensus 134 pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 134 PYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp CEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred hHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence 8999999999887753 3668899999998743
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.62 E-value=1.8e-15 Score=122.29 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
+...+++.+.++++.+|||||||+|..+..+++.. +.+|+++|.++..++.+++++.+.+++|+.++++|...-.+. +
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence 45667788899999999999999999999999775 678999999999999999999999999999999999885444 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+||.|++..+...+++. +.+.|||||++++..
T Consensus 145 pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp CEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred cceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence 99999999999877633 567899999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=5e-15 Score=127.99 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
..++++|||||||+|.++..+++.. ..+|+++|.|+ +++.++++.+.++. +++.++.+|+.+++.+ .+||+|++..
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW 113 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEe
Confidence 3468999999999999999888763 45899999986 66788888888887 5799999999998876 8999999977
Q ss_pred ccccc---ccHHHHHHHHHhccccCeeEEE
Q 022864 139 MFEHM---KNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+.+.+ .....++..+.++|||||.++-
T Consensus 114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 66554 5678899999999999999853
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=3.9e-15 Score=121.42 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=89.3
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---C-CCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~~ 131 (291)
+.+.++||.+|||+|||+|..+..+++.. |..+|+|+|+|+.+++.++++++..+ ++..+..|...... . ..+
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccce
Confidence 45678899999999999999999999874 67899999999999999998876543 67888888866432 2 677
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+|++. +.+..+...+++++.+.|||||.+++....
T Consensus 145 D~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 145 DVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 887764 555567788999999999999999987653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.3e-14 Score=127.45 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------C--CCeEE-E
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------L--QNVEI-I 118 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~--~~v~~-~ 118 (291)
-..+..+++.++++++.+|||||||+|..+..++..++..+|+|||+|+.+++.|+++++..+ . ..+.+ .
T Consensus 202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 446778889999999999999999999999999998866699999999999999999886532 1 12333 2
Q ss_pred EccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 119 VADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 119 ~~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++....+.. ..+|+|+++. +.+.+++...+.++.+.|||||++++..
T Consensus 282 ~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 282 KKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 3444432211 4678888764 4567889999999999999999987743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=8.3e-15 Score=125.88 Aligned_cols=102 Identities=27% Similarity=0.370 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
.++.+|||||||+|.++..+++.. ..+|+++|.|+. ...++++++.+++ +++.++++|+.+++.+ ++||+|++..+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 109 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred CCcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee
Confidence 468899999999999999988763 358999999975 4667777788777 5799999999998877 89999999776
Q ss_pred cccc---ccHHHHHHHHHhccccCeeEEE
Q 022864 140 FEHM---KNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 l~~~---~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.+.+ .....++..+.++|||||.++-
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6555 4578899999999999999864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.2e-14 Score=121.72 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--------------------------
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-------------------------- 113 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------------------- 113 (291)
+...+.+|||+|||+|.++...+... ..+|+|+|+|+.|++.++++.++.+..
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 44568899999999998876666554 568999999999999998876443210
Q ss_pred ----CeEEEEccccCCc------cC-CCccEEEEcccccccc----cHHHHHHHHHhccccCeeEEEEeec
Q 022864 114 ----NVEIIVADISTFE------ME-ASYDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 114 ----~v~~~~~d~~~~~------~~-~~~D~i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
......+|+.... .. ++||+|++..+++++. ++..+++++.++|||||.|++..+.
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 0133455665421 11 5799999999999983 5788999999999999999997764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.4e-14 Score=122.76 Aligned_cols=105 Identities=23% Similarity=0.326 Sum_probs=85.0
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~ 136 (291)
....++.+|||||||+|.++..+++.. ..+|+++|.|+.+.. +++....++. +++.++.+|+.++..+ .+||+|++
T Consensus 31 ~~~~~~~~VLDiGcG~G~lsl~aa~~G-a~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivs 108 (311)
T d2fyta1 31 PHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS 108 (311)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred cccCCcCEEEEECCCCCHHHHHHHHcC-CCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEE
Confidence 345578999999999999999999763 368999999998765 4555555555 6899999999998766 89999999
Q ss_pred ccccccc---ccHHHHHHHHHhccccCeeEEE
Q 022864 137 IEMFEHM---KNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
..+.+.+ .....++....+.|||||+++-
T Consensus 109 e~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 109 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7766655 2356778888899999999874
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=4.1e-15 Score=127.62 Aligned_cols=108 Identities=21% Similarity=0.199 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~~ 136 (291)
.++.+|||++||+|.++..++.. +.+|+++|+|+.+++.++++++.+|+++++++.+|+.++. .. ++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 36889999999999999998865 7799999999999999999999999988999999998742 22 68999999
Q ss_pred cccccc---------cccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 137 IEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 137 ~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+.+... ..++..++..+.++|||||.|++++.++.
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 875422 23456789999999999999998876543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=2e-14 Score=119.69 Aligned_cols=105 Identities=21% Similarity=0.219 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
..++.+|||+|||+|.++..++++. .++|+++|+|+.+++.+++|++.++++ +++++++|+.++.....||.|+++.+
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 3679999999999999999999874 579999999999999999999999994 69999999999876688999998754
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
- ....++..+.+.|+|||++.+....+
T Consensus 184 ~----~~~~~l~~a~~~l~~gG~lh~~~~~~ 210 (260)
T d2frna1 184 V----RTHEFIPKALSIAKDGAIIHYHNTVP 210 (260)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred C----chHHHHHHHHhhcCCCCEEEEEeccc
Confidence 3 23456777888999999997765543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=6.4e-14 Score=113.85 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=89.7
Q ss_pred HHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHHHh-----CCCCeEE
Q 022864 51 MLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKY------SNCKITGICNSKTQKEFIEEQCRVL-----ELQNVEI 117 (291)
Q Consensus 51 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~------~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~ 117 (291)
+...+++.+ .++++.+|||||||+|..+..+++.. ++.+|+++|.+++.++.++++.... +..++.+
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 345566665 67899999999999999999888752 2358999999999999998876543 3458999
Q ss_pred EEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 118 IVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 118 ~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.+|.....++ ++||+|++..++.++++ .+.+.|||||++++..
T Consensus 146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp EESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred EecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 99999885544 89999999999987763 3678999999998754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.52 E-value=3.6e-14 Score=108.73 Aligned_cols=107 Identities=9% Similarity=0.165 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-c-CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-M-EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~-~-~~~~D~i~~~~ 138 (291)
-.+.+|||+|||+|.++..++.+. ..+|+++|.++.+++.+++++...++ ++++++++|+.... . ..+||+|++.+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rg-a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCCeEEEcCCccCHHHHHHHHhC-cceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 368899999999999999988774 35999999999999999999999888 46999999998753 2 27899999988
Q ss_pred cccccccHHHHHHHHH--hccccCeeEEEEeecc
Q 022864 139 MFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 170 (291)
++. -......+..+. +.|+|||.+++.....
T Consensus 92 Py~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~ 124 (152)
T d2esra1 92 PYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 124 (152)
T ss_dssp SSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred hhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence 753 233455666654 5699999999876543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=2.6e-14 Score=122.99 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=92.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc----cC-CCccEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE----ME-ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~----~~-~~~D~i 134 (291)
..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++|++.+|+ ++++++++|+.+.. .. .+||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 3678999999999999999998763 45899999999999999999999999 57999999988742 12 689999
Q ss_pred EEccccccc---------ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++..+.... .++..++..+.++|+|||.|++++.++.
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 998764322 3466789999999999999999886653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=1e-13 Score=109.92 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 126 (291)
.+++++++.+...++..+||++||+|+.+..+++.+|+.+|+|+|.++.+++.++++.+..+. ++.++++++.++.
T Consensus 10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLL 88 (192)
T ss_dssp TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHH
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHH
Confidence 356778888888999999999999999999999999999999999999999999998876653 8999999987753
Q ss_pred --cC-CCccEEEEcccc---------cccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 --ME-ASYDRIYSIEMF---------EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 --~~-~~~D~i~~~~~l---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.. +++|.|+...-+ ..+......+..+.++|+|||.+++.++..
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 12 689999876433 123456778999999999999998876543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.44 E-value=5.4e-13 Score=112.73 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~~D~ 133 (291)
..++.+|||++||+|.++..++.. +++|++||.|+.+++.|++|++.++++ +++++++|+.++.. ..+||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 346789999999999999999875 789999999999999999999999883 59999999987531 268999
Q ss_pred EEEcccccc---------c-ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEH---------M-KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~---------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|++..+-.. + .+...+++.+.++|+|||.+++.+.+.
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 999875321 1 234667788899999999877766544
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=4.9e-13 Score=104.26 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccC-CCccEEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EME-ASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~-~~~D~i~ 135 (291)
...+.+|||+|||+|.+++.++.+ +++++++|.|+.+++.++++++..+++ ..+...+...+ ... .+||+|+
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhcccccccccCCccceeE
Confidence 356789999999999999998877 789999999999999999999999883 34444444332 112 6899999
Q ss_pred EcccccccccHHHHHHHH--HhccccCeeEEEEeec
Q 022864 136 SIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~ 169 (291)
++.++.. +....+..+ ..+|+|||++++....
T Consensus 116 ~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 116 MAPPYAM--DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp ECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred Ecccccc--CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 9988653 333334443 3579999999887653
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.42 E-value=1.9e-13 Score=116.81 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=90.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCc----cC-CCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE----ME-ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~----~~-~~~D~ 133 (291)
..++.+|||++||+|.++..++... ..+|++||+|+.+++.+++|++.+++ ++++++.+|+.+.. .. .+||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3568999999999999999887652 34899999999999999999999988 47999999998752 12 68999
Q ss_pred EEEccccc---------ccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|++..+-. ...++..+++.+.++|+|||.|++++.++
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 99987632 12457789999999999999999987654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.1e-12 Score=103.35 Aligned_cols=106 Identities=15% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
.+.+|||++||+|.++..++.+. ..+|+.||.++.+++.+++++...+..++.++.+|+.++... .+||+|++.+++
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 57899999999999999999874 458999999999999999999988887899999998875433 789999999987
Q ss_pred cccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022864 141 EHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 170 (291)
.. .....++..+.+ +|+++|.+++.....
T Consensus 122 ~~-~~~~~~l~~l~~~~~L~~~~iIiiE~~~~ 152 (183)
T d2fpoa1 122 RR-GLLEETINLLEDNGWLADEALIYVESEVE 152 (183)
T ss_dssp ST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred cc-chHHHHHHHHHHCCCCCCCeEEEEEecCc
Confidence 53 356677777765 699999999976543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.39 E-value=3.4e-12 Score=104.98 Aligned_cols=113 Identities=18% Similarity=0.122 Sum_probs=90.0
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.....+++... .....+|||||||+|.++..+++++|+.+++.+|+ |..++. ....++++++.+|+.+.. +
T Consensus 67 ~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~------~~~~~ri~~~~gd~~~~~-p 138 (244)
T d1fp1d2 67 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN------APPLSGIEHVGGDMFASV-P 138 (244)
T ss_dssp HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT------CCCCTTEEEEECCTTTCC-C
T ss_pred HHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc------cCCCCCeEEecCCccccc-c
Confidence 34456666666 46678999999999999999999999999999998 443321 112268999999998743 2
Q ss_pred CCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 129 ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
..|++++..++|+.++ ...+|+++++.|+|||++++.+...+
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence 4599999999999955 56799999999999999999876543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.36 E-value=3.6e-12 Score=100.17 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=91.7
Q ss_pred HHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc----c
Q 022864 54 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE----M 127 (291)
Q Consensus 54 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~----~ 127 (291)
.++..+. ...+.+|||++||+|.++..++.+. ..+|++||.++.+++.+++++...+. +++.++++|+.... .
T Consensus 31 alFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~ 109 (182)
T d2fhpa1 31 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 109 (182)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc
Confidence 3334433 3478999999999999999999884 45899999999999999999998887 47999999987742 1
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022864 128 -EASYDRIYSIEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 170 (291)
..+||+|++.+++. ..+....+..+.+ +|+|+|.+++.....
T Consensus 110 ~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~~~~ 154 (182)
T d2fhpa1 110 EKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 154 (182)
T ss_dssp TTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence 26899999999874 3456777887754 699999998876544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=3.1e-12 Score=106.35 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC--CCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME--ASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~--~~~D~i~~~~ 138 (291)
.+..+|+|+|||+|..+..+++ .|.++|+++|+|+.+++.|++|++..++. ++.+..+|+.+.... ++||+|+|+.
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 187 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence 3456999999999999999885 57899999999999999999999999884 578888998875433 7899999998
Q ss_pred cccccc---------c-----------HHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHMK---------N-----------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~---------~-----------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+.-.-. + ..-+-+-+.+.|+|||++++...
T Consensus 188 PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 188 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 642110 0 11111224678999999888653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=3.4e-12 Score=102.00 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=71.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccE
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 133 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 133 (291)
.++...+...|.+|||+|||+|.++..++... ..+|+|+|+|+.+++.++++++..+. +..++.+|...+. .+||+
T Consensus 37 ~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~--~~fD~ 112 (201)
T d1wy7a1 37 WLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN--SRVDI 112 (201)
T ss_dssp HHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--CCCSE
T ss_pred HHHHhcCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC--CcCcE
Confidence 33444555678999999999999999888663 46999999999999999999988877 7899999987763 78999
Q ss_pred EEEccccccc
Q 022864 134 IYSIEMFEHM 143 (291)
Q Consensus 134 i~~~~~l~~~ 143 (291)
|+++.++...
T Consensus 113 Vi~nPP~~~~ 122 (201)
T d1wy7a1 113 VIMNPPFGSQ 122 (201)
T ss_dssp EEECCCCSSS
T ss_pred EEEcCccccc
Confidence 9999988654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=7.6e-12 Score=103.27 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-------CCCccE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-------EASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~~D~ 133 (291)
.+..++||+|||+|..+..++.+.|+.+++|+|+|+++++.|+++++.+++ +++.++..+...... .++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 345699999999999999999998899999999999999999999999998 468888766544211 157999
Q ss_pred EEEcccccc
Q 022864 134 IYSIEMFEH 142 (291)
Q Consensus 134 i~~~~~l~~ 142 (291)
|+|+.++..
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999999874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.29 E-value=5e-12 Score=100.13 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=62.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~ 138 (291)
.+.-.|.+|||+|||+|.++..++... ..+|+|+|+++.+++.+++|+ +++.++++|+.+++ ++||+|+++.
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~--~~fD~Vi~NP 115 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEIS--GKYDTWIMNP 115 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCC--CCEEEEEECC
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcc-----ccccEEEEehhhcC--CcceEEEeCc
Confidence 344568999999999999998888663 458999999999999888764 37899999998864 7899999999
Q ss_pred cccc
Q 022864 139 MFEH 142 (291)
Q Consensus 139 ~l~~ 142 (291)
++..
T Consensus 116 Pfg~ 119 (197)
T d1ne2a_ 116 PFGS 119 (197)
T ss_dssp CC--
T ss_pred ccch
Confidence 8753
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=1.1e-11 Score=99.80 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEcc
Q 022864 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVAD 121 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d 121 (291)
+...+-+.+..+++.. .+.+|||+|||+|..+..+++.. ++.+|+++|+++++.+.++++++..|+ ++++++.+|
T Consensus 40 i~~~~G~lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd 116 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA 116 (214)
T ss_dssp CHHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecc
Confidence 4455556677776654 35699999999999999999865 468999999999999999999999998 579999999
Q ss_pred ccCCcc------C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 122 ISTFEM------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 122 ~~~~~~------~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..+... . .+||+|+....-... .....+....+.|+|||++++...
T Consensus 117 ~~e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 117 SQDLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp HHHHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCC
T ss_pred ccccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCc
Confidence 987421 1 579999987433211 122346667789999999877544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.8e-11 Score=96.52 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.++.+. .+..-++.+|+|+|||.|..++.++-.+|..+++.+|.+..-+...++.....+++++.+++..+++.....+
T Consensus 54 i~DSl~-~~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~ 132 (207)
T d1jsxa_ 54 ILDSIV-VAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPP 132 (207)
T ss_dssp HHHHHH-HGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSC
T ss_pred hcchHh-hhhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccc
Confidence 344432 3333456799999999999999999989999999999999999999999999999899999999999765578
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
||+|+|..+ .....+++-+...++++|.+++.-
T Consensus 133 fD~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 133 FDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp EEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cceehhhhh----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 999999754 467889999999999999987743
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.7e-11 Score=97.74 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 124 (291)
.+-+.+..+++.. ..++|||||||+|..+.++++..| +.+|+.+|.+++..+.|+++++..|+ ++++++.+|+.+
T Consensus 46 ~~g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e 122 (219)
T d2avda1 46 EQAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 122 (219)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence 3455666666543 467999999999999999998764 68999999999999999999999998 569999999866
Q ss_pred Cc-------cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 125 FE-------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 125 ~~-------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. ...+||+|+....- .++...++.+.+.|+|||.+++...
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 32 12689999997533 4567788899999999999998654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.18 E-value=1.4e-10 Score=93.94 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 124 (291)
.+-+.+..+++.. ...+|||||+++|..+.++++..| +.+++.+|.+++..+.|++++++.|+ ++++++.+|+.+
T Consensus 46 ~~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~ 122 (227)
T d1susa1 46 DEGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 122 (227)
T ss_dssp HHHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence 3445666666553 467999999999999999998765 68999999999999999999999998 579999999977
Q ss_pred Ccc--------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 125 FEM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 125 ~~~--------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
... .++||+|+....- ..+...++.+.+.|+|||.+++...
T Consensus 123 ~L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 123 VLDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccC
Confidence 421 2579999997533 5677889999999999999998543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.17 E-value=1.8e-10 Score=98.78 Aligned_cols=112 Identities=11% Similarity=0.065 Sum_probs=89.0
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
.+...++.+|||.|||+|.++..+..+. +..+++|+|+++.++..|+.++...+. +..+..+|........+||
T Consensus 112 ~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD 190 (328)
T d2f8la1 112 VIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVD 190 (328)
T ss_dssp HHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEE
T ss_pred HhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccccccccccc
Confidence 3456678899999999999998887542 345899999999999999988887776 6777788877655558999
Q ss_pred EEEEccccccccc------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMFEHMKN------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|++++++..... ...++..+.+.|+|||++.+..|..
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 9999998743311 2347999999999999998887754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.15 E-value=1.4e-10 Score=91.93 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCcchH----HHHHHHHC----CCCEEEEEcCCHHHHHHHHHHH--------------HH----hCC---
Q 022864 62 EDGHTVLDVGCGWGSL----SLYIAQKY----SNCKITGICNSKTQKEFIEEQC--------------RV----LEL--- 112 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~----~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~--------------~~----~~~--- 112 (291)
.+..+|+++|||+|.- +..+.+.. ...+|+|+|+|+..++.|++.. .. .+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4567999999999983 34344331 1358999999999999887411 00 000
Q ss_pred ----------CCeEEEEccccCCcc--CCCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEE
Q 022864 113 ----------QNVEIIVADISTFEM--EASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 113 ----------~~v~~~~~d~~~~~~--~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+.+...+...... .++||+|+|.+++.+++. ..++++++.+.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 124555555555332 278999999999999954 468999999999999998873
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=3.5e-10 Score=98.16 Aligned_cols=116 Identities=18% Similarity=0.284 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
......+++.+++.+...++.+|||+.||+|.++..|++. ..+|+|+|.++.+++.|+++++.++++|+.++.+|.++
T Consensus 194 ~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 194 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhh
Confidence 3445667788888888888999999999999999999986 67999999999999999999999999999999999887
Q ss_pred CccC-----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 125 FEME-----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 ~~~~-----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.... .++|+|+...+=... .+.++.+.+ ++|.-+++++
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~-~~~~~ivYVS 314 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVS 314 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhhhhhccCceEEeCCCCccH---HHHHHHHHH-cCCCEEEEEe
Confidence 4321 669999999877654 345666665 3677666664
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.15 E-value=1.6e-10 Score=94.87 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
....+|||||||+|..+..+++++|+.++++.|+ |..++. .+. ++++++.+|+.+.. ..+|++++..++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~rv~~~~gD~f~~~--p~aD~~~l~~vL 148 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN-------LSGSNNLTYVGGDMFTSI--PNADAVLLKYIL 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCBTTEEEEECCTTTCC--CCCSEEEEESCG
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh-------CcccCceEEEecCcccCC--CCCcEEEEEeec
Confidence 3457899999999999999999999999999998 443332 222 58999999998743 357999999999
Q ss_pred cccccH--HHHHHHHHhccccC---eeEEEEeec
Q 022864 141 EHMKNY--QNLLKKISKWMKED---TLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~--~~~l~~~~~~Lkpg---G~l~~~~~~ 169 (291)
|+.++. .++|+++++.|+|| |++++....
T Consensus 149 Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 149 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 999654 57999999999998 777776653
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.14 E-value=2.4e-10 Score=93.85 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=85.6
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
....++..... .+..+|||||||+|..+..+++++|+.+++++|+.+. ++.+ ...+++.++.+|+.+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------~~~~r~~~~~~d~~~~~-P- 138 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------PSYPGVEHVGGDMFVSI-P- 138 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------CCCTTEEEEECCTTTCC-C-
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------ccCCceEEecccccccC-C-
Confidence 34555565554 4467999999999999999999999999999998543 2211 11258999999997743 2
Q ss_pred CccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
..|+++...+++..+ +...+++++++.|+|||.+++.+...
T Consensus 139 ~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~ 181 (243)
T d1kyza2 139 KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL 181 (243)
T ss_dssp CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence 357788888998884 46779999999999999999876643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.13 E-value=4e-10 Score=88.38 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc---cC-CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE---ME-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~---~~-~~~D~i~~ 136 (291)
.+.+|||+.||+|.++.+++.+. ..+|+.||.+...++.++++++..+.. ...+...|..+.. .. .+||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 57899999999999999999884 459999999999999999999988763 4666777665432 22 57999999
Q ss_pred cccccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022864 137 IEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 170 (291)
.+++.. .....++..+.. +|+++|.+++.....
T Consensus 122 DPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 122 DPPFHF-NLAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp CCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred chhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 999864 446677777754 799999999977543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=99.04 E-value=1.5e-09 Score=87.98 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=97.2
Q ss_pred CCHHHHHHH-HHHHHH--HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE
Q 022864 42 KTLEDAEKA-MLELYC--ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 118 (291)
Q Consensus 42 ~~l~~~~~~-~~~~~~--~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~ 118 (291)
.+.++...+ .++.+. ..+......+|+|+|+|.|..++.++-.+|+.+++.+|.+..-+...+......+++++.++
T Consensus 46 ~~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~ 125 (239)
T d1xdza_ 46 TEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFC 125 (239)
T ss_dssp CSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEE
T ss_pred CCHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEE
Confidence 355555444 444442 22222356799999999999999999889999999999999999999999999999999999
Q ss_pred EccccCCcc----CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 119 VADISTFEM----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 119 ~~d~~~~~~----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..++++.. .++||+|+|..+ .....+++-+...+++||.+++.
T Consensus 126 ~~R~E~~~~~~~~~~~~D~v~sRAv----a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 126 HDRAETFGQRKDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp ESCHHHHTTCTTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred eehhhhccccccccccceEEEEhhh----hCHHHHHHHHhhhcccCCEEEEE
Confidence 998887542 268999999844 47788999999999999998773
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=1.9e-10 Score=97.56 Aligned_cols=109 Identities=10% Similarity=0.040 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--C---CCCeEEEEccccCCccC--CCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--E---LQNVEIIVADISTFEME--ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~---~~~v~~~~~d~~~~~~~--~~~D~ 133 (291)
.+...+||.||+|.|..+..+.+..+..+|++||+++..++.+++.+... + -++++++.+|+..+... ++||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 45678999999999999999987666789999999999999999887532 2 15899999999986422 78999
Q ss_pred EEEccc--cc-c-c-c--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 134 IYSIEM--FE-H-M-K--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 i~~~~~--l~-~-~-~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|++... .. . . . -..++++.+++.|+|||++++...+
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 997542 11 1 1 1 1367999999999999999886543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.02 E-value=8.1e-10 Score=89.86 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++.+|||||||+|.++..|++. +.+|++||+++.+++.++++... .+++.++++|+.+++.+
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFP 82 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhcccc
Confidence 456778888888899999999999999999999987 77999999999999988876543 35899999999998765
Q ss_pred -CCccEEEEccccc
Q 022864 129 -ASYDRIYSIEMFE 141 (291)
Q Consensus 129 -~~~D~i~~~~~l~ 141 (291)
.....|+++-+++
T Consensus 83 ~~~~~~vv~NLPYn 96 (235)
T d1qama_ 83 KNQSYKIFGNIPYN 96 (235)
T ss_dssp SSCCCEEEEECCGG
T ss_pred ccccceeeeeehhh
Confidence 3345677777663
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.97 E-value=1.2e-09 Score=88.09 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
..+.+++.+...++.+|||.|||+|.++..+.+..+ ...++|+|+++..+..+ .+...+++|........
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~~~~ 77 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGE 77 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSS
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhcccccc
Confidence 455677778888899999999999999988876643 46899999998753221 24677888888776668
Q ss_pred CccEEEEcccccccc-----------------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMK-----------------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~-----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.||+|+++.++.... -...++..+.+.|+|||++.+..+..
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 999999998864321 02356788899999999998887754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=6.6e-10 Score=93.11 Aligned_cols=110 Identities=15% Similarity=0.027 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~D~i 134 (291)
.+...+||-||.|.|..+..+.+..+..+|++||+++.+++.+++.+.... -++++++.+|+..+... ++||+|
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 355689999999999999999976566799999999999999998765431 25899999999886533 789999
Q ss_pred EEccccccc-c----cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFEHM-K----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~-~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++...-... + -..++++.+++.|+|||++++...++
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 986433211 1 13689999999999999999876543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.94 E-value=9.7e-10 Score=91.62 Aligned_cols=109 Identities=9% Similarity=0.023 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----------CCCCeEEEEccccCCccC-C
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----------ELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~v~~~~~d~~~~~~~-~ 129 (291)
.+++.+||-||+|.|..+..+.+ ++..+|++||+++..++.+++.+... ..++++++.+|+..+... +
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 45678999999999999999885 45679999999999999998765321 125899999999875433 7
Q ss_pred CccEEEEcccccccc----cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|++...-..-. ...++++.+++.|+|||++++...+.
T Consensus 149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence 899999865332111 12578999999999999998876543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.92 E-value=2.3e-10 Score=93.65 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
..++.+++.+...++.+|||||||+|.++..|++. +.+|++||+++.+++.+++++.. .+++.++++|+.+++.+
T Consensus 16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh--ccchhhhhhhhhcccccc
Confidence 34567888888899999999999999999999988 77999999999998877665432 24899999999998776
Q ss_pred CCccEEEEcccccc
Q 022864 129 ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~~~D~i~~~~~l~~ 142 (291)
..++.|+++.+++-
T Consensus 92 ~~~~~vv~NLPY~I 105 (245)
T d1yuba_ 92 KQRYKIVGNIPYHL 105 (245)
T ss_dssp SSEEEEEEECCSSS
T ss_pred ceeeeEeeeeehhh
Confidence 66677888877643
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.91 E-value=4e-09 Score=93.47 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=105.8
Q ss_pred hHHHHHhhC---CCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC---------
Q 022864 19 TSFFKLVLG---KYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS--------- 86 (291)
Q Consensus 19 ~~~~~~~~~---~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--------- 86 (291)
.+.|+.++. ....-..|.|-.+ ....+.+++.+...++.+|+|.+||+|.+...+.+...
T Consensus 123 g~~yE~ll~~~~~~~~k~~G~f~TP--------~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~ 194 (425)
T d2okca1 123 GAIYESILEKNGQDKKSGAGQYFTP--------RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKR 194 (425)
T ss_dssp HHHHHHHHHHHHTCTTTCCGGGCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHH
T ss_pred HHHHHHHHHHHHHhhhccchhhccc--------hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhh
Confidence 567777773 2222122444434 44566677777777889999999999999988876421
Q ss_pred ----CCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccCCCccEEEEcccccccc----------------
Q 022864 87 ----NCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEMEASYDRIYSIEMFEHMK---------------- 144 (291)
Q Consensus 87 ----~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~---------------- 144 (291)
...++|+|+++.....|+-++...+. .+......|........+||+|++++++..-.
T Consensus 195 ~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~ 274 (425)
T d2okca1 195 DFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETK 274 (425)
T ss_dssp HHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS
T ss_pred hhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccc
Confidence 13599999999999999988887776 24567788887765558899999999984321
Q ss_pred -cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 145 -NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 145 -~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
....++..+.+.|++||++.+..|..
T Consensus 275 ~~~~~Fi~~~~~~Lk~~G~~~iI~p~~ 301 (425)
T d2okca1 275 NNQLNFLQHMMLMLKTGGRAAVVLPDN 301 (425)
T ss_dssp CHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEechH
Confidence 12458999999999999998887753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.5e-09 Score=90.61 Aligned_cols=112 Identities=14% Similarity=0.091 Sum_probs=86.1
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----CCCCeEEEEccccCCccC--CCcc
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVADISTFEME--ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~--~~~D 132 (291)
+..+...+||-||.|.|..+..+.+..+..+|++||++++.++.+++.+... .-++++++.+|+..+... ++||
T Consensus 74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 74 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3456678999999999999999987655779999999999999999876532 125899999998886433 7899
Q ss_pred EEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|++...-..- -...++++.+++.|+|||++++...+.
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 99986422111 113468999999999999999886544
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.87 E-value=2.3e-09 Score=89.11 Aligned_cols=109 Identities=20% Similarity=0.080 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-C---CCCeEEEEccccCCccC--CCccEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-E---LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~---~~~v~~~~~d~~~~~~~--~~~D~i 134 (291)
..+..+||-||.|.|..+..+.+..+..+|++||++++.++.+++.+... + -++++++.+|...+... ++||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 45568999999999999999997655679999999999999999876532 2 15899999998885433 789999
Q ss_pred EEccccccc--c--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHM--K--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~--~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++...-..- . -..++++.+++.|+|||+++....+
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 987532111 1 2468999999999999999987644
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.84 E-value=1.8e-09 Score=90.92 Aligned_cols=110 Identities=16% Similarity=0.059 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~D~i 134 (291)
.+...+||-||.|.|..+..+.+..+..+|++||+++..++.+++.+.... -++++++.+|...+... ++||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 456779999999999999999976555799999999999999998764321 15899999999886432 789999
Q ss_pred EEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++...-..- -...++++.+++.|+|||+++.+..+.
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 986532211 123678999999999999999876443
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.83 E-value=8.1e-09 Score=86.35 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--C-CCcc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--E-ASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~-~~~D 132 (291)
..+...+||-||.|.|..++.+.+..+..++++||++++.++.+++.+.... -++++++.+|...... . ++||
T Consensus 77 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 77 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 3456789999999999999999876555799999999999999998764321 2589999999887542 2 5899
Q ss_pred EEEEccccccc--c--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMFEHM--K--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l~~~--~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|++...-..- . -..++++.+++.|+|||++++...+.
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 99985432111 1 13679999999999999999987544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.5e-08 Score=84.73 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=89.7
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRI 134 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i 134 (291)
..+...++.+|||+++|.|+=+..+++...+..|+++|+++.-+..++++++..|.+++.....|..... .+..||.|
T Consensus 96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~I 175 (284)
T d1sqga2 96 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRI 175 (284)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred cccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEE
Confidence 3457789999999999999999999988666899999999999999999999999866665555544322 22689999
Q ss_pred EEccccccc------cc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++..+-... ++ ..+++.++.+.|||||+|+-++.+.
T Consensus 176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 986543211 11 3568999999999999999888764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=1.1e-08 Score=79.48 Aligned_cols=113 Identities=11% Similarity=0.137 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 127 (291)
+++++++.+...++..++|..||.|+.+..+.+. +.+|+|+|.++.+++.+++. ..+++.+++.++.++..
T Consensus 6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHH
Confidence 5677788888899999999999999999999986 67999999999988777653 23589999998887531
Q ss_pred --C-CCccEEEEccccccc---------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 128 --E-ASYDRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 --~-~~~D~i~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. +.+|.|++..-+... ......|......|+|||.+++.++.
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 1 679999986533211 23455788889999999999987764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.79 E-value=3.2e-08 Score=83.68 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=91.9
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRI 134 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i 134 (291)
..+...++.+|||++||.|+=+..++... ....++++|.++.-+..++++.+..+..++.....|....... ..||.|
T Consensus 110 ~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~I 189 (313)
T d1ixka_ 110 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI 189 (313)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred hcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEE
Confidence 34567899999999999999998888764 3568999999999999999999999998888888887776543 789999
Q ss_pred EEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++..+-... + -..+++.+..+.|||||.++-++.+.
T Consensus 190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 985542111 1 13568899999999999998888764
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=3.5e-08 Score=81.68 Aligned_cols=90 Identities=13% Similarity=0.254 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
...++.+++.+...++.+|||||+|+|.++..|++. +.+|+++|+++.+++..++.+..... ++++++.+|+.....
T Consensus 7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 345677888888888999999999999999999988 67999999999999999988766544 579999999998765
Q ss_pred CCCccEEEEccccc
Q 022864 128 EASYDRIYSIEMFE 141 (291)
Q Consensus 128 ~~~~D~i~~~~~l~ 141 (291)
+ .++.||++-+++
T Consensus 85 ~-~~~~vV~NLPY~ 97 (278)
T d1zq9a1 85 P-FFDTCVANLPYQ 97 (278)
T ss_dssp C-CCSEEEEECCGG
T ss_pred h-hhhhhhcchHHH
Confidence 4 457888887764
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.3e-07 Score=79.21 Aligned_cols=112 Identities=12% Similarity=-0.049 Sum_probs=86.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCcc
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYD 132 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D 132 (291)
.+...++.+|||++||+|+-+..++... +...|+++|+++.-++.++++++..|++++.+...|...+... ++||
T Consensus 89 ~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 89 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred ccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceee
Confidence 3567889999999999999999888653 4679999999999999999999999998899999998875432 6799
Q ss_pred EEEEccccccc-----------------------c-cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 133 RIYSIEMFEHM-----------------------K-NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~i~~~~~l~~~-----------------------~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.|++..+-... . ....++..+. .|+|||.|+-++.+.
T Consensus 169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 99986542111 0 0123555555 479999988877754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.2e-07 Score=73.57 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=80.5
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--
Q 022864 51 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-- 126 (291)
Q Consensus 51 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 126 (291)
++.++.++.. .+++.+||||||++|+++..+.+.. +...++++|+.+- ..++++.++.+|+.+..
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~ 77 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVM 77 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhh
Confidence 3455555544 3789999999999999999998764 4478999998663 23467999999998743
Q ss_pred -------cCCCccEEEEccccccccc-----------HHHHHHHHHhccccCeeEEEEeec
Q 022864 127 -------MEASYDRIYSIEMFEHMKN-----------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 -------~~~~~D~i~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
...++|+|+|..+...-.+ ....+.-+.+.|++||.+++-.+.
T Consensus 78 ~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 78 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 1267999999876543211 234667778999999999998774
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=7.1e-08 Score=83.31 Aligned_cols=103 Identities=16% Similarity=0.018 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC---------------eEEEEccccCCcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN---------------VEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---------------v~~~~~d~~~~~~ 127 (291)
.+.+|||..||+|..++..+...+..+|+++|+|+..++.+++|++.++..+ +.+.+.|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4679999999999999988877656799999999999999999999887532 4566666655432
Q ss_pred C--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 128 E--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. ..||+|.... + .....+++.+.+.++.||.|.+....
T Consensus 125 ~~~~~fDvIDiDP-f---Gs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC-C---CCcHHHHHHHHHHhccCCEEEEEecC
Confidence 2 6799988875 3 45577999999999999999986543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=5.3e-08 Score=88.29 Aligned_cols=148 Identities=8% Similarity=0.030 Sum_probs=89.4
Q ss_pred cCCChHHHHHhhCCC---CCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----C-
Q 022864 15 YELPTSFFKLVLGKY---FKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----S- 86 (291)
Q Consensus 15 yd~~~~~~~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----~- 86 (291)
.|.-.+.|+.++... ..-..|-|-.+ ....+.+++.+...++.+|+|.+||+|.+...+.+.. .
T Consensus 121 ~D~lG~~YE~ll~~~~~~~~~~~GqfyTP--------~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~ 192 (524)
T d2ar0a1 121 RDDFGDMYEGLLQKNANETKSGAGQYFTP--------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 192 (524)
T ss_dssp ------------------------CCCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTT
T ss_pred hhHHHHHHHHHHHHHHhhhccccchhccc--------cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCc
Confidence 355677888887532 22222444433 4455666777777888999999999999988766531 0
Q ss_pred -------------CCEEEEEcCCHHHHHHHHHHHHHhCCC-----CeEEEEccccCCcc--CCCccEEEEcccccccc--
Q 022864 87 -------------NCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADISTFEM--EASYDRIYSIEMFEHMK-- 144 (291)
Q Consensus 87 -------------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~--~~~~D~i~~~~~l~~~~-- 144 (291)
...++|+|+++.+...++-++.-.+.+ .-.+...+...... ..+||+|++++++..-.
T Consensus 193 ~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~ 272 (524)
T d2ar0a1 193 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT 272 (524)
T ss_dssp TTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSC
T ss_pred ccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccc
Confidence 125899999999999998887666542 11234444433221 26799999999884321
Q ss_pred ------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 145 ------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 145 ------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
..-.++..+.+.|+|||++.+..|..
T Consensus 273 ~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 273 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp CCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 12358999999999999999888753
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=5e-08 Score=79.71 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++..|||||||.|.++..|++. +.+|+++|+++.+++..++..... +++.++.+|+.++...
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~~ 82 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhccc
Confidence 345677888888888999999999999999999987 679999999999988877643222 4799999999987543
Q ss_pred ------CCccEEEEccccc
Q 022864 129 ------ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ------~~~D~i~~~~~l~ 141 (291)
..--.|+++-+++
T Consensus 83 ~~~~~~~~~~~vvgNlPY~ 101 (252)
T d1qyra_ 83 ELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHHTSCEEEEEECCTT
T ss_pred ccccccCCCeEEEecchHH
Confidence 2223677776664
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.34 E-value=9.3e-07 Score=71.05 Aligned_cols=109 Identities=12% Similarity=0.154 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
..+..++..+. +.+|||||++.|..+..++.. .+..+++++|+++...... ....++++++.+|..+.
T Consensus 70 ~~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~ 141 (232)
T d2bm8a1 70 AVYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDL 141 (232)
T ss_dssp HHHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCS
T ss_pred HHHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccH
Confidence 44566666543 569999999999887766643 3568999999987643221 11235899999998764
Q ss_pred ccC-----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 126 EME-----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~~~-----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..- ..+|+|+.... |+.......+ .+...|+|||++++.+.
T Consensus 142 ~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 142 TTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred HHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 321 46898887654 4332222223 35689999999999654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.30 E-value=3.2e-07 Score=73.48 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
.++..+.++..+.++.+|+|||||.|+.+..++.+.+...|.|+++--...+. .......+.+-+++...+--....+.
T Consensus 53 ~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~dv~~l~~~ 131 (257)
T d2p41a1 53 AKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVDVFFIPPE 131 (257)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-CccccccccccccchhhhhHHhcCCC
Confidence 45677777777788899999999999999999977545678888873221000 00000001111344333222222237
Q ss_pred CccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+|+|+|...-..- ...-++++-+.++|+|||-+++-.+.
T Consensus 132 ~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 132 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred cCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 89999998542211 11235777888999999999887765
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.07 E-value=5.7e-06 Score=66.78 Aligned_cols=88 Identities=15% Similarity=0.217 Sum_probs=67.8
Q ss_pred HHHHHcCCCCC--CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---------CCCeEEEEccc
Q 022864 54 LYCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------LQNVEIIVADI 122 (291)
Q Consensus 54 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~ 122 (291)
.+.+.++.+++ .+|||+-||.|..+..++.. +++|+++|-++......+....... ..+++++++|.
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 45555665544 48999999999999999988 8899999999988776665543321 13789999998
Q ss_pred cCCccC--CCccEEEEccccccc
Q 022864 123 STFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 123 ~~~~~~--~~~D~i~~~~~l~~~ 143 (291)
.++... .+||+|+...++.+-
T Consensus 155 ~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHhccCCCCCEEEECCCCccc
Confidence 775433 679999999999655
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.73 E-value=0.00033 Score=52.77 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=68.3
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022864 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 126 (291)
+++.+.+++.+||-+||| .|.++..+++.. +++|+++|.+++-++.+++ .+. ...+...+.....
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~----~ga-~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGA-DVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTC-SEEEECCTTTSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH----cCC-cEEEeccccccccchhhhhhh
Confidence 456678899999999998 577777777766 8899999999997766654 343 2222221111110
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+-... ....++.+.++++|+|++++..
T Consensus 93 ~~~g~g~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred cccccCCceeeecCC------ChHHHHHHHHHHhcCCceEEEe
Confidence 1246898875422 2466888889999999988754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=5.6e-05 Score=57.27 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCc--cCCCc
Q 022864 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFE--MEASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~--~~~~~ 131 (291)
+.+.+.+++.+||-+|+| .|.++..+++.. +++|+++|.+++.++.+++ .|.+ .++. .+-.+.. ..+.+
T Consensus 20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~----lGa~--~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGAD--HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp HHHTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS--EEEEGGGTSCHHHHSCSCE
T ss_pred HHHhCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc----cCCc--EEeeccchHHHHHhhhccc
Confidence 345678899999999998 677788887765 8999999999997776654 4543 2222 1111211 12679
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+....-.+- ..+....+.|+|+|++++..
T Consensus 93 d~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 93 DLIVVCASSLTD----IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEEEECCSCSTT----CCTTTGGGGEEEEEEEEECC
T ss_pred ceEEEEecCCcc----chHHHHHHHhhccceEEEec
Confidence 988764322111 12445778999999988754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.50 E-value=0.00016 Score=58.00 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----CC------------------------------------CEE
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----SN------------------------------------CKI 90 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----~~------------------------------------~~v 90 (291)
++...+.......+..++|-.||+|.+.++.+-.. || ..+
T Consensus 38 il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i 117 (249)
T d1o9ga_ 38 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER 117 (249)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCc
Confidence 34444444566677889999999999998876531 11 246
Q ss_pred EEEcCCHHHHHHH---HHHHHHhCCC-CeEEEEccccCCcc------CCCccEEEEccccccc---------ccHHHHHH
Q 022864 91 TGICNSKTQKEFI---EEQCRVLELQ-NVEIIVADISTFEM------EASYDRIYSIEMFEHM---------KNYQNLLK 151 (291)
Q Consensus 91 ~~vD~s~~~~~~a---~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~D~i~~~~~l~~~---------~~~~~~l~ 151 (291)
+|.|+++.+++.+ ++|+...|+. .+.+...|+.+... +...++||+|.+...- ..+..+..
T Consensus 118 ~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~ 197 (249)
T d1o9ga_ 118 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR 197 (249)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHH
Confidence 7899999999888 4578888884 68999999877432 2567999999987543 12566777
Q ss_pred HHHhccccCeeEEEE
Q 022864 152 KISKWMKEDTLLFVH 166 (291)
Q Consensus 152 ~~~~~LkpgG~l~~~ 166 (291)
.+.+.+.....++++
T Consensus 198 ~l~~~~p~~s~~~it 212 (249)
T d1o9ga_ 198 SLASALPAHAVIAVT 212 (249)
T ss_dssp HHHHHSCTTCEEEEE
T ss_pred HHHccCCCCcEEEEe
Confidence 788888655555554
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=0.00011 Score=61.62 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCC------CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022864 49 KAMLELYCERSRL------EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~------~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 122 (291)
...++.+++.+++ ..+.+|||||+|.|.++..|.+.....+|+++|+++...+..++... + +++.++.+|+
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~-~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--G-SPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--T-SSCEEECSCT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--C-CCcEEEeCch
Confidence 3445556655543 25778999999999999999876423589999999999988877653 2 4789999998
Q ss_pred cCC
Q 022864 123 STF 125 (291)
Q Consensus 123 ~~~ 125 (291)
..+
T Consensus 100 l~~ 102 (322)
T d1i4wa_ 100 YDW 102 (322)
T ss_dssp TCH
T ss_pred hhc
Confidence 764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.49 E-value=0.00037 Score=53.96 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=70.9
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cCC-------c
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STF-------E 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~-------~ 126 (291)
++..+.+++.+||-+|||. |..+..+++.....+|+++|.+++.++.+++ .|. +.+.-.. .++ .
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga---~~~~~~~~~~~~~~i~~~t 90 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALL 90 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----ccc---cEEEeCCCcCHHHHHHHHh
Confidence 4567889999999999997 6677777776645699999999997766654 343 2222111 111 1
Q ss_pred cCCCccEEEEccccc------c---cccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 MEASYDRIYSIEMFE------H---MKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~------~---~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
....+|+++-.--.. + .......++.+.+.++|||++.+.-.
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 124689888542211 1 12345789999999999999987644
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=0.00036 Score=53.26 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccC-------
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIST------- 124 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~------- 124 (291)
+....+++.+||-+||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++.. +..+
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEE----IGAD--LTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheeccccc-cccccccccccccccccccc----ccce--EEEeccccchHHHHHHHHH
Confidence 33456789999999998 477888888876 66 89999999998776654 3432 12211 1111
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
......+|+|+-.-.- ...++...++|+|||++++..
T Consensus 95 ~~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 95 ITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred hhCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEe
Confidence 1112458988854211 345777889999999987654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00031 Score=53.24 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=67.4
Q ss_pred HHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022864 54 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 126 (291)
.+.+....+++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.++ +.|.+. ++ |..+..
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~----~~Ga~~--vi--~~~~~~~~~~i 89 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAHE--VF--NHREVNYIDKI 89 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE--EE--ETTSTTHHHHH
T ss_pred HHHHHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccc----ccCccc--cc--ccccccHHHHh
Confidence 3445567789999999996 4778888888776 899999998887655544 456532 22 222211
Q ss_pred ----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+... . ...++...++|+|+|+++..
T Consensus 90 ~~~t~~~g~d~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEML-----A--NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHCTTCEEEEEESC-----H--HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhccCCceEEeecc-----c--HHHHHHHHhccCCCCEEEEE
Confidence 125699988742 1 34678888999999998874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0014 Score=49.33 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=66.9
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------- 126 (291)
+++.+.+++.+||=+|||. |.++..+++.. ++ +|+++|.+++.++.+++ .|.+ .++..+-.+..
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~----~Ga~--~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKE----IGAD--LVLQISKESPQEIARKVE 91 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH----TTCS--EEEECSSCCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHH----hCCc--cccccccccccccccccc
Confidence 4556788999999999985 45666666665 55 89999999997766654 4542 12222212110
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+-.-. ....++...+.+++||++++..
T Consensus 92 ~~~g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 92 GQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp HHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEe
Confidence 1246898886432 2457888999999999988754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.26 E-value=0.0014 Score=48.97 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-C
Q 022864 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-A 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~ 129 (291)
+++...+++.+||=+||| .|..+..+++.. +++|+++|.+++.++.++ +.|.+ .++..+-.+... . .
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~----~~Ga~--~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELAR----KLGAS--LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHHS
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhh----ccCcc--ccccccchhHHHHHHHhhc
Confidence 355678899999999998 466777777776 799999999999766554 34542 233222222110 1 2
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|.++.... ....++...+.|+|+|++++.
T Consensus 93 g~~~~i~~~~------~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 93 GAHGVLVTAV------SNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SEEEEEECCS------CHHHHHHHHTTEEEEEEEEEC
T ss_pred CCcccccccc------cchHHHHHHHHhcCCcEEEEE
Confidence 3343333211 135678888999999998774
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.20 E-value=0.00063 Score=51.57 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=67.4
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------- 126 (291)
++....+++.+||=+|||. |..+..+++.. ++ +|+++|.+++-++.+++ .|.+ .++.-.-.++.
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~----lGa~--~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKF----YGAT--DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHH----HTCS--EEECGGGSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHh----hCcc--ccccccchhHHHHHHHHh
Confidence 4567888999999999996 78888888766 54 79999999987666653 4542 22222111111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+-.-.- ...++...++++|+|.+++..
T Consensus 93 ~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 11458988764322 345677889999999998854
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.19 E-value=0.0013 Score=49.61 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=68.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022864 53 ELYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 126 (291)
..+++....+++.+||=+|||. |..+..+++......|+++|.++.-++.+++ .|.+ .++..+-.+..
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~i~~ 91 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKE 91 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe--EEEeCCCcCHHHHHHH
Confidence 4456667789999999999984 4466666666545578899999987666654 4542 33333222221
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++.+|+|+-.-. ....++...+.++|+|++++..
T Consensus 92 ~t~gg~D~vid~~G------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 92 ITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred HcCCCCcEEEEcCC------cHHHHHHHHhcccCceEEEEEe
Confidence 1256898875422 2467788899999999987743
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.16 E-value=0.00023 Score=53.30 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
++.+|+=||+|. |..+...+... +++|+.+|.+++.++..+.... .++.....+-..+... ...|+|+..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 568999999994 66777777776 9999999999998776665442 2456655554443322 678999987655
Q ss_pred cccccHHHHHHHHHhccccCeeEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.--+-+.-+-+++.+.+|||.+++
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred CCcccCeeecHHHHhhcCCCcEEE
Confidence 433334445667889999999764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.16 E-value=0.0037 Score=47.12 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=69.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc----
Q 022864 53 ELYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE---- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~---- 126 (291)
..+++....+++.+||=+|||. |..+..+++......|+++|.+++-.+.+++ .|.+ .++...-.+ ..
T Consensus 18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~~~~ 91 (174)
T d1e3ia2 18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT--DCLNPRELDKPVQDVI 91 (174)
T ss_dssp HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHH
T ss_pred HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC--cccCCccchhhhhhhH
Confidence 3455667788999999999996 8888888887733489999999996655544 4542 222211111 10
Q ss_pred ---cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 127 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 127 ---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
....+|+|+-.- .....++...+.++|| |.+++.-
T Consensus 92 ~~~~~~G~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 92 TELTAGGVDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHHTSCBSEEEESS------CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred hhhhcCCCcEEEEec------ccchHHHHHHHHhhcCCeEEEecC
Confidence 125689887542 2356788899999996 9987744
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00097 Score=50.05 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=66.2
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cC-CCcc
Q 022864 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-ME-ASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~-~~~D 132 (291)
+++.+.+++.+||=+||| .|.++..+++.. +++++++|.+++..+.++ +.|.+ .++...-.+.. .. +.+|
T Consensus 23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~----~lGad--~~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAK----ALGAD--EVVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHH----HHTCS--EEEETTCHHHHHTTTTCEE
T ss_pred HHHhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHh----ccCCc--EEEECchhhHHHHhcCCCc
Confidence 356788999999999998 477888888876 889999999998766554 34542 22221111111 11 5799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+++-.-.- ...++...+.|+|+|++++.
T Consensus 96 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 96 FILNTVAA------PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEEECCSS------CCCHHHHHTTEEEEEEEEEC
T ss_pred eeeeeeec------chhHHHHHHHHhcCCEEEEe
Confidence 88764322 12356677899999998874
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.76 E-value=0.0063 Score=50.07 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=54.3
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~ 141 (291)
++|||+-||.|+++.-+.+. |.+ +.++|+++...+..+.|. .-.++.+|+.++... ...|+++...+-.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC------CSEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC------CCCCccCChhhCCHhHcccccEEeeccccc
Confidence 58999999999999888766 555 459999999776665543 235678999998654 6799999877655
Q ss_pred cc
Q 022864 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 73 ~f 74 (324)
T d1dcta_ 73 SW 74 (324)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.74 E-value=0.0032 Score=47.09 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=67.1
Q ss_pred HHHcCCCCCCEEEEEcC-C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022864 56 CERSRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------- 126 (291)
+++.+.+++.+||=+|| | .|..+..+++.....+|+++|.+++.++.+++ .|.+ .++..+-.+..
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~~ 93 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRIT 93 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc--eeeccCCcCHHHHHHHHh
Confidence 45677889999999997 3 55666666665534799999999987666654 4542 23332222211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+..+|+|+.... ....++...+.++|||++++..
T Consensus 94 ~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 94 ESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp TTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECC
T ss_pred hcccchhhhcccc------cchHHHhhhhhcccCCEEEEec
Confidence 1256998887532 2456777889999999987753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.68 E-value=0.0061 Score=45.21 Aligned_cols=98 Identities=10% Similarity=0.108 Sum_probs=62.3
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc---c--C
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE---M--E 128 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~---~--~ 128 (291)
+.....+++.+||=.|||. |..+..+++.. +++|+++|.+++.++.+++ .|.+ .+.....+ .. . .
T Consensus 20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhccccc
Confidence 3455788999999999985 45566666654 7899999999997766544 4542 22111111 11 0 1
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|.++.... -...++...+.|+|+|.+++..
T Consensus 92 ~~~~~~v~~~~------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTAV------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeecC------CHHHHHHHHHHhccCCceEecc
Confidence 23444443321 1466888999999999988754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.67 E-value=0.00091 Score=50.44 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=64.2
Q ss_pred HHHcCCCCCCEEEEEcC-C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCC
Q 022864 56 CERSRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEA 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~ 129 (291)
+.+.+.+++.+||=.|. | .|..+..+++.. +++|++++.+++..+.++ +.|.+.+ + |..+.. ...
T Consensus 20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~----~lGa~~~-i---~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPL----ALGAEEA-A---TYAEVPERAKAWG 90 (171)
T ss_dssp HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHH----HTTCSEE-E---EGGGHHHHHHHTT
T ss_pred HHHhCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccc----cccccee-e---ehhhhhhhhhccc
Confidence 45567889999999884 3 577888888876 899999999988666554 3555321 1 222221 126
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-. .. + .++...++|+|+|++++.
T Consensus 91 g~D~v~d~--~G--~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVLEV--RG--K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp SEEEEEEC--SC--T----THHHHHTTEEEEEEEEEC
T ss_pred cccccccc--cc--h----hHHHHHHHHhcCCcEEEE
Confidence 79988753 11 1 256678899999998763
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.61 E-value=0.0026 Score=50.63 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 108 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~ 108 (291)
.++..+++... .+|..|||.-||+|+.+....+. +-+.+|+|++++.++.|++++.
T Consensus 200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 44556665553 67889999999999999887766 7899999999999999998864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.43 E-value=0.0021 Score=48.63 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=66.3
Q ss_pred HHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c--cC
Q 022864 54 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E--ME 128 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~--~~ 128 (291)
.+.+....+++.+||=-|+ |.|.++..+++.. +++|+++..+++..+.++ +.|.+.+.-...+..+. . .+
T Consensus 22 ~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~----~lGa~~vi~~~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 22 RLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLR----VLGAKEVLAREDVMAERIRPLDK 96 (176)
T ss_dssp HHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHH----HTTCSEEEECC---------CCS
T ss_pred HHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHH----hcccceeeecchhHHHHHHHhhc
Confidence 3444455667889999885 5678999999887 999999998888665554 34543221111111111 1 12
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+.+|+|+-.-. ...+....++|+|||+++....
T Consensus 97 ~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 97 QRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp CCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSC
T ss_pred cCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeec
Confidence 67998776421 2347788899999999987544
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.36 E-value=0.0084 Score=50.31 Aligned_cols=110 Identities=9% Similarity=0.012 Sum_probs=70.6
Q ss_pred CCEEEEEcCCcchHHHHHH-------H-H--------CCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-C--eEEEEcccc
Q 022864 64 GHTVLDVGCGWGSLSLYIA-------Q-K--------YSNCKITGICNSKTQKEFIEEQCRVLEL-Q-N--VEIIVADIS 123 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la-------~-~--------~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~-~--v~~~~~d~~ 123 (291)
..+|.|+||.+|..+..+. + + -|..+|..-|+-.+-....-+......- . + +.-+.+.+-
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 3679999999999874322 1 1 1345788888766544333322211111 1 1 333445665
Q ss_pred CCccC-CCccEEEEccccccccc---------------------------------HHHHHHHHHhccccCeeEEEEeec
Q 022864 124 TFEME-ASYDRIYSIEMFEHMKN---------------------------------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 124 ~~~~~-~~~D~i~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.-.+| ++.++++|..++||+.. ...+|+.=.+-|+|||++++...+
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 54445 89999999999998731 234666666788999999999988
Q ss_pred cCCc
Q 022864 170 HKTF 173 (291)
Q Consensus 170 ~~~~ 173 (291)
.+..
T Consensus 212 r~~~ 215 (359)
T d1m6ex_ 212 RRSE 215 (359)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.36 E-value=0.0035 Score=47.01 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cCCCcc
Q 022864 60 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~D 132 (291)
..+++.+||-+|||. |..+..+++......|+++|.+++.++.+++ .+.+ .++..+-.... ....+|
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~--~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD--HVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCHHHHHHHHTTTCCEE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc--eeecCcccHHHHHHHhhCCCCce
Confidence 357899999999985 4455666665535689999999986665553 4432 23322211110 114588
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+-...- ...++...+.|++||++++.-
T Consensus 103 ~vid~~g~------~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 103 VAMDFVGS------QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEESSCC------HHHHHHGGGGEEEEEEEEECC
T ss_pred EEEEecCc------chHHHHHHHHHhCCCEEEEEe
Confidence 88764322 456888899999999988743
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.35 E-value=0.023 Score=46.39 Aligned_cols=117 Identities=7% Similarity=0.037 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~ 127 (291)
.++..+..........|+.+|||.-.-...+. ..++.+++=||. |++++.-++...+.+. .+...+..|+.+.-.
T Consensus 77 ~~D~~~~~~~~~g~~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~ 154 (297)
T d2uyoa1 77 FFDTYFNNAVIDGIRQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWP 154 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHH
T ss_pred HHHHHHHHHHhhCCCeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHH
Confidence 44555443222334577789999877665552 234678889996 8888877777777654 246778888875211
Q ss_pred --------C-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 128 --------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 --------~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. ...-++++-+++.++ +...++++.+.....||+.+++....
T Consensus 155 ~~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 155 PALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp HHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred HHHHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 1 233567777788888 46778999999999999999886543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.32 E-value=0.01 Score=44.04 Aligned_cols=89 Identities=22% Similarity=0.267 Sum_probs=58.5
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022864 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
+|+=||||. |.++..|.+.....+|+++|.+++.++.+++ .+. +.....+..... ....|+|+..-..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~--~~~~~~~~~~~~-~~~~dlIila~p~--- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI--IDEGTTSIAKVE-DFSPDFVMLSSPV--- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS--CSEEESCGGGGG-GTCCSEEEECSCH---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhc--chhhhhhhhhhh-ccccccccccCCc---
Confidence 588899995 3456666666556799999999997766654 332 222222322221 1467999987665
Q ss_pred ccHHHHHHHHHhccccCeeEE
Q 022864 144 KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.....+++.+.+.++++..+.
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 345678888999998876543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.32 E-value=0.029 Score=41.84 Aligned_cols=105 Identities=11% Similarity=0.002 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcc-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 126 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---- 126 (291)
+..+++....+++.+||=+|||.. ..+..+++.....+|+++|.+++-++.+++ .|.+ .++...-.+..
T Consensus 16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~--~~i~~~~~d~~~~~~ 89 (174)
T d1p0fa2 16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT--ECLNPKDYDKPIYEV 89 (174)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc--EEEcCCCchhHHHHH
Confidence 334556667899999999999854 455566665534689999999997766654 4542 22221111110
Q ss_pred ----cCCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEee
Q 022864 127 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHF 168 (291)
Q Consensus 127 ----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~ 168 (291)
....+|+|+-.-. ....+......+ +++|.+++.-.
T Consensus 90 ~~~~~~~G~d~vid~~g------~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 90 ICEKTNGGVDYAVECAG------RIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp HHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHhcCCCCcEEEEcCC------CchHHHHHHHHHHHhcCceEEEEE
Confidence 1146888875422 234455555555 55688877543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.30 E-value=0.024 Score=42.46 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=62.3
Q ss_pred HHHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCC------
Q 022864 54 LYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTF------ 125 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~------ 125 (291)
.+++....+++.+|+=+|||. |..+..+++.....+|+++|.+++-++.|++ .|.+ .++. .+-...
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~----~GA~--~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA----VGAT--ECISPKDSTKPISEVLS 93 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----HTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh----cCCc--EEECccccchHHHHHHH
Confidence 445556788999999999985 4556666666634699999999998777665 3442 1221 111111
Q ss_pred -ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 126 -EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.....+|+++-... ........+..+++++|++++..
T Consensus 94 ~~~g~G~d~vi~~~g-----~~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 94 EMTGNNVGYTFEVIG-----HLETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp HHHTSCCCEEEECSC-----CHHHHHHHHTTSCTTTCEEEECS
T ss_pred HhccccceEEEEeCC-----chHHHHHHHHHhhcCCeEEEEEE
Confidence 01256887775422 22233333444556668887744
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.29 E-value=0.0057 Score=49.26 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
..++..++... ..+|..|||.-||+|..+.+..+. +-+.+|+|+++..++.+++++...
T Consensus 194 ~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 194 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 34556666654 367899999999999999988877 789999999999999999988753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.18 E-value=0.0037 Score=51.39 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
.+++.++... ..++..|||.-||+|+.+....+. +-+.+|+|++++.++.+++++..
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence 4556666554 467899999999999999988776 88999999999999999876543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0019 Score=48.72 Aligned_cols=97 Identities=8% Similarity=0.049 Sum_probs=65.2
Q ss_pred HHHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022864 56 CERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------- 126 (291)
.+...++++.+||=.|+| .|..+..+++.. +++|++++.|++..+.+++ .|.+ .++...-.++.
T Consensus 21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa~--~vi~~~~~d~~~~v~~~t 93 (179)
T d1qora2 21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW--QVINYREEDLVERLKEIT 93 (179)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCCe--EEEECCCCCHHHHHHHHh
Confidence 344567899999998665 577888888876 8999999999997766654 4543 22221112211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+....- ..+......|+|+|.+++.
T Consensus 94 ~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 94 GGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp TTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeec
Confidence 12568987765322 2456788899999987663
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.11 E-value=0.0048 Score=46.53 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=65.7
Q ss_pred HHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022864 54 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 126 (291)
.+.+....+++.+||=.|. |.|..+..+++.. ++++++++-+++..+.++ +.|.+. .+...-.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~----~~Ga~~--vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVEY--VGDSRSVDFADEILE 88 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCSE--EEETTCSTHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccc----cccccc--cccCCccCHHHHHHH
Confidence 3445556788999998773 4678888888776 889999988887655544 445532 2221111211
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+.... ...++.+.++|+++|+++..
T Consensus 89 ~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 1256999997532 24567788999999998774
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.07 E-value=0.018 Score=42.45 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=57.5
Q ss_pred CEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 65 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++|.=||+|. +.++..|.+. +.+|+++|.+++.++.+++ .+. +.....+.+.. ...|+|+..-..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~----~~~--~~~~~~~~~~~---~~~DiIilavp~-- 67 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE----RQL--VDEAGQDLSLL---QTAKIIFLCTPI-- 67 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTS--CSEEESCGGGG---TTCSEEEECSCH--
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH----hhc--cceeeeecccc---cccccccccCcH--
Confidence 4788899983 3456666655 8899999999987665543 332 22222232222 578999876544
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
....++++++...|+++..+.-
T Consensus 68 -~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 68 -QLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp -HHHHHHHHHHGGGSCTTCEEEE
T ss_pred -hhhhhhhhhhhhhcccccceee
Confidence 3456788999998888886643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.98 E-value=0.0039 Score=47.02 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE----------ccccCC------
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV----------ADISTF------ 125 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~----------~d~~~~------ 125 (291)
++.+||=||+|. |..+...+... +++|+++|.++..++..++. +...+.... +....+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l----~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESL----GGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHT----TCEECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHh----hcceEEEeccccccccccccchhhcCHHHHH
Confidence 567999999995 56677777666 99999999999966655543 221111100 001000
Q ss_pred ------ccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022864 126 ------EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 126 ------~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
... ...|+|+..-.+..-+-+.-+-+++.+.+|||.+++
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 001 468999987655444334445677889999999764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.93 E-value=0.041 Score=40.75 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=65.5
Q ss_pred HHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCC------
Q 022864 54 LYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTF------ 125 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~------ 125 (291)
.+.+....+++.+||=.||| .|.++..+++......|+++|.+++-.+.+++ .|.+ .++.. +-.+.
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~--~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT--ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc--EEEeCCchhhHHHHHHH
Confidence 34455678999999999987 44566667766534689999999997666554 4542 22221 11111
Q ss_pred -ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 126 -EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 126 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+..+|+|+-.-. ....++.....+++||.+++.
T Consensus 93 ~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 93 EMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEE
Confidence 01256898887522 245678888999998876654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.86 E-value=0.024 Score=42.60 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=67.1
Q ss_pred HHHHHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022864 54 LYCERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 126 (291)
.+.+..+.+++.+||=.|++ .|..+..+++.. +++|++++-+++..+.++ ..|.+. .+.-+-.+..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~----~~Ga~~--vi~~~~~~~~~~~~~ 92 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFDA--AFNYKTVNSLEEALK 92 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE--EEETTSCSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHH----hhhhhh--hcccccccHHHHHHH
Confidence 44455677899999988875 467888888876 899999999988655544 445432 2222212211
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+-. +. .+.++...++|+|+|.+++.
T Consensus 93 ~~~~~Gvd~v~D~-----vG--~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 93 KASPDGYDCYFDN-----VG--GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHCTTCEEEEEES-----SC--HHHHHHHGGGEEEEEEEEEC
T ss_pred HhhcCCCceeEEe-----cC--chhhhhhhhhccCCCeEEee
Confidence 12568887763 22 35788899999999998874
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.84 E-value=0.022 Score=46.91 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~ 139 (291)
.+++|||+-||.|+++..|.+. |.+ +.++|+++.+++..+.|... ..++|+.++... ..+|+++...+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~-------~~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGE-------KPEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSC-------CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCC-------CCcCchhcCchhhcceeeeeecccc
Confidence 5799999999999999988765 555 56799999988887776531 125788887544 67999998775
Q ss_pred cccc
Q 022864 140 FEHM 143 (291)
Q Consensus 140 l~~~ 143 (291)
...+
T Consensus 81 Cq~f 84 (327)
T d2c7pa1 81 CQAF 84 (327)
T ss_dssp CTTT
T ss_pred cchh
Confidence 5433
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.76 E-value=0.038 Score=46.45 Aligned_cols=88 Identities=8% Similarity=0.088 Sum_probs=56.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-------CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-------SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
+..+.+.++.++..+|+|+|+|.|.++.-+.... ...+++.+|.|+...+.-++... ...++.++ .++.+
T Consensus 68 ~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~~~i~w~-~~~~~ 144 (365)
T d1zkda1 68 SASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GIRNIHWH-DSFED 144 (365)
T ss_dssp HHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TCSSEEEE-SSGGG
T ss_pred HHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--ccccceec-cChhh
Confidence 3334445566667899999999999988775532 23579999999996655444432 22356553 44544
Q ss_pred CccCCCccEEEEcccccccc
Q 022864 125 FEMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~ 144 (291)
.+ ...-+|+|+..+..++
T Consensus 145 ~~--~~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 145 VP--EGPAVILANEYFDVLP 162 (365)
T ss_dssp SC--CSSEEEEEESSGGGSC
T ss_pred cc--cCCeEEEecccCcccc
Confidence 43 2236777877776553
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.63 E-value=0.076 Score=39.33 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=63.1
Q ss_pred HHHHHcCCCCCCEEEEEcCCcc-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCc-----
Q 022864 54 LYCERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~----- 126 (291)
.+.+....+++.+||=+|+|.+ ..+..+++.....+|+++|.+++-.+.+++ .|.+ ..+. .+-.+..
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~ 92 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT--ECVNPQDYKKPIQEVLT 92 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe--eEEecCCchhHHHHHHH
Confidence 4455667899999999999754 456666666645799999999997666654 3432 2221 2222211
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
..+.+|+|+-.... ...++.....++++ |.+++.
T Consensus 93 ~~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 93 EMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEe
Confidence 11568988875433 34566666777776 555543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.092 Score=41.61 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc----------cC
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~----------~~ 128 (291)
+++.+|=-|++.|. .+..|++. |++|+.++.+++.++.+.+..+..+. .++.++.+|+.+.. ..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 47789999988764 45555554 89999999999998888888777765 36888899998842 11
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
+..|++|.+...
T Consensus 87 ~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 87 HSGVDICINNAGL 99 (257)
T ss_dssp HCCCSEEEECCCC
T ss_pred cCCCCEEEecccc
Confidence 679999987644
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.33 E-value=0.011 Score=44.08 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=63.4
Q ss_pred HHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--Cc--cC
Q 022864 55 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FE--ME 128 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~--~~ 128 (291)
+.+.-..+++.+||=-|+ |.|..+..+++.. +++|+++.-+++..+.++ +.|.+.+ +...|... .. .+
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~----~lGad~v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLK----QLGASEV-ISREDVYDGTLKALSK 88 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHH----HHTCSEE-EEHHHHCSSCCCSSCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHH----hhcccce-EeccchhchhhhcccC
Confidence 333333445667887663 5778899999887 899999999888655554 4455322 11122111 11 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.+|+|+-. +. ...+....++|+|+|++++.-
T Consensus 89 ~gvd~vid~-----vg--g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 89 QQWQGAVDP-----VG--GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp CCEEEEEES-----CC--THHHHHHHTTEEEEEEEEECC
T ss_pred CCceEEEec-----Cc--HHHHHHHHHHhccCceEEEee
Confidence 568887653 21 346788999999999987743
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.017 Score=47.70 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEcc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~~ 138 (291)
+++|+|+.||.|+++..|.+..=..+ +.++|+++..++..+.+. +...+..+|+.++... ...|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 57899999999999888766521123 679999999777666543 2456777888876533 3689999987
Q ss_pred ccccc
Q 022864 139 MFEHM 143 (291)
Q Consensus 139 ~l~~~ 143 (291)
+...+
T Consensus 77 PCq~f 81 (343)
T d1g55a_ 77 PCQPF 81 (343)
T ss_dssp C----
T ss_pred ccccc
Confidence 66544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.89 E-value=0.076 Score=39.93 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=64.3
Q ss_pred HHHHcCCCCCCEEEEEcC---CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEEccccCCc----
Q 022864 55 YCERSRLEDGHTVLDVGC---GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFE---- 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc---G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~---- 126 (291)
+.+....+++.+||=+.+ |.|..+..+++.. +++|+++--++...+...+.+++.|.+.+- ....|..++.
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~ 98 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIK 98 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHH
Confidence 334456788888888733 2567788888776 889988865655555566666777764221 1112222211
Q ss_pred -----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 -----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
....+|+|+-. +. ...+....++|+|+|+++..
T Consensus 99 ~~~~~~g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 99 EWIKQSGGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHTCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHhhccCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEE
Confidence 12457887743 22 33457778999999998763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.73 E-value=0.14 Score=35.80 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=55.0
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~i~~~ 137 (291)
++|+=+|+ |.++..+++.. .+..|+.+|.+++.++.+.+. . .+.++.+|..+... . ..+|.+++.
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h---hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 46777776 55555555432 278999999999987655432 1 46788999988531 1 678988884
Q ss_pred ccccccccHHHHHHHHHhccccCeeE
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l 163 (291)
..- .....+...+.+.+.+.-.+
T Consensus 73 t~~---d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 73 TGK---EEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CSC---HHHHHHHHHHHHHTTCCCEE
T ss_pred CCc---HHHHHHHHHHHHHcCCceEE
Confidence 322 12233444455667777443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.19 Score=40.02 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=70.5
Q ss_pred CCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
|++|-=|-.|+++++..+++.+ .+.+|+.++.+++..+.+.+.++..+. ++.++.+|+.+... . +
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 5677555445555544444321 278999999999998888888877765 78999999988531 1 6
Q ss_pred CccEEEEccccccc---c-----c-----------HHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHM---K-----N-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~---~-----~-----------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.|++|.+.-+... . + .-.+.+.+...|+++|.++...
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 89999988754322 0 1 1235666778889999876543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.068 Score=39.92 Aligned_cols=91 Identities=12% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cCCCccEEEE
Q 022864 62 EDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~i~~ 136 (291)
+++.+||=.|. |.|..++.+++.. |++|+++.-+++..+.+++ .|.+ .++.-+-.+.. ....+|.|+-
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~----lGad--~vi~~~~~~~~~~l~~~~~~~vvD 102 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKS----LGAS--RVLPRDEFAESRPLEKQVWAGAID 102 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTEE--EEEEGGGSSSCCSSCCCCEEEEEE
T ss_pred CCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHh----hccc--cccccccHHHHHHHHhhcCCeeEE
Confidence 34457776553 4677888888887 9999999999987655543 4442 22222212211 1145787642
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+. ...+....+.|+++|+++..
T Consensus 103 -----~Vg--g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 103 -----TVG--DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp -----SSC--HHHHHHHHHTEEEEEEEEEC
T ss_pred -----Ecc--hHHHHHHHHHhccccceEee
Confidence 222 34688999999999998874
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.66 E-value=0.095 Score=44.35 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=44.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLEL 112 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~ 112 (291)
..++..++|+|+-.|..+..+++..+ ..+|+++|+++...+..+++++.+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 45778999999999999888776543 36999999999999999999887654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.41 Score=37.33 Aligned_cols=76 Identities=24% Similarity=0.198 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.|+.+|=-|++.|. .+..+++. |++|+.+|.+++.++...+.+...+. ++..+.+|+.+... .
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57788888888774 56666665 89999999999999888888877664 78999999988531 1
Q ss_pred CCccEEEEccccc
Q 022864 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~i~~~~~l~ 141 (291)
+..|+++.+....
T Consensus 83 g~idilinnag~~ 95 (244)
T d1yb1a_ 83 GDVSILVNNAGVV 95 (244)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCceeEeecccc
Confidence 6789999877554
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.61 E-value=0.098 Score=39.21 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=61.6
Q ss_pred HHHHcCCCCC--CEEEEEc--CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----
Q 022864 55 YCERSRLEDG--HTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 126 (291)
Q Consensus 55 ~~~~~~~~~~--~~vLDiG--cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---- 126 (291)
+.+....+++ .+||=.| .|.|..+..+++......|++++.+++.... ..+..|.+ .++...-.++.
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~---l~~~~gad--~vi~~~~~~~~~~~~ 94 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLF---LTSELGFD--AAVNYKTGNVAEQLR 94 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHH---HHHHSCCS--EEEETTSSCHHHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhh---hhhcccce--EEeeccchhHHHHHH
Confidence 4444556655 7899877 4689999999988733467777777664322 23334442 22222211111
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+..+|+|+-.- . ...++...++|+|+|+++..
T Consensus 95 ~~~~~GvDvv~D~v-----G--g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 95 EACPGGVDVYFDNV-----G--GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHCTTCEEEEEESS-----C--HHHHHHHHTTEEEEEEEEEC
T ss_pred HHhccCceEEEecC-----C--chhHHHHhhhccccccEEEe
Confidence 125689887432 2 35688899999999998763
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.58 E-value=0.074 Score=37.25 Aligned_cols=87 Identities=7% Similarity=0.064 Sum_probs=59.0
Q ss_pred CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEcccccccccH
Q 022864 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSIEMFEHMKNY 146 (291)
Q Consensus 72 cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~~~~~l~~~~~~ 146 (291)
||.|..+..+++...+..++.+|.+++..+.+. .. .+.++.+|..+.. .. ..++.+++...- ...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~----~~---~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~---d~~ 75 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL----RS---GANFVHGDPTRVSDLEKANVRGARAVIVNLES---DSE 75 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH----HT---TCEEEESCTTSHHHHHHTTCTTCSEEEECCSS---HHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH----hc---CccccccccCCHHHHHHhhhhcCcEEEEeccc---hhh
Confidence 677889999998876778999999999765443 22 5788999988743 11 677888874321 122
Q ss_pred HHHHHHHHhccccCeeEEEEee
Q 022864 147 QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 147 ~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
...+....+.+.|...++....
T Consensus 76 n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEECS
T ss_pred hHHHHHHHHHHCCCceEEEEEc
Confidence 3344445667888887776543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.58 E-value=0.58 Score=38.25 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---------------------CCCeEEEEc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------LQNVEIIVA 120 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------------------~~~v~~~~~ 120 (291)
.+...|+-||||.-.....+....++.+++=||. |+.++.=++.+++.. -++...+.+
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 4567899999999988888877777777777787 555444333332210 135678888
Q ss_pred cccCCcc---------C-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 121 DISTFEM---------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 121 d~~~~~~---------~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+.+... . ...-++++-.++.++ +...++++.+.+..+ +|.+++-.+-
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i 233 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPI 233 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence 9887421 1 234578888899888 456778888877665 4555555554
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.20 E-value=0.12 Score=38.00 Aligned_cols=101 Identities=9% Similarity=0.029 Sum_probs=60.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 126 (291)
..+.+....+++.+||=+|||.+. .+..+++...+..|+++|.+++-++.++ +.|.+ .++...-.+..
T Consensus 18 ~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd--~~in~~~~~~~~~~~~ 91 (175)
T d1cdoa2 18 GAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGAT--DFVNPNDHSEPISQVL 91 (175)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCC--EEECGGGCSSCHHHHH
T ss_pred HHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCc--EEEcCCCcchhHHHHH
Confidence 344555678899999999999854 4444555554668999999999766655 44542 23322111111
Q ss_pred ---cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEE
Q 022864 127 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFV 165 (291)
Q Consensus 127 ---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~ 165 (291)
....+|+|+-.-. ....+......+++| |.+++
T Consensus 92 ~~~~~~G~d~vid~~G------~~~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 92 SKMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp HHHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HhhccCCcceeeeecC------CHHHHHHHHHHhhCCCcceeE
Confidence 1146888865422 234556666666665 44443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.29 Score=38.42 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----------~ 128 (291)
.|+.+|=-|++.|. .+..|++. |++|..+|.+++.++.+.+...+... .++.++.+|+.+... .
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 46788888877653 34445544 89999999999987777665544322 368899999988531 1
Q ss_pred -CCccEEEEccccccccc
Q 022864 129 -ASYDRIYSIEMFEHMKN 145 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~ 145 (291)
++.|+++.+.......+
T Consensus 80 ~G~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKN 97 (254)
T ss_dssp HSCCCEEEECCCCCCSSS
T ss_pred cCCcCeeccccccccccc
Confidence 67999998876655433
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.61 E-value=0.67 Score=36.53 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 128 (291)
.|+++|=-|++.|. .+..|++. |++|+.+|.+ ++.++.+.+.+++.+. ++.++.+|+.+.. ..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 47788888887663 45555555 8999999876 5566666666666665 7889999998842 11
Q ss_pred -CCccEEEEcccccccc--------c-----------HHHHHHHHHhccccCeeEEEE
Q 022864 129 -ASYDRIYSIEMFEHMK--------N-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~--------~-----------~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..|+++.+....... + .-.+.+.+.+.|+.+|..++.
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 6789998876443221 1 223466667777777766554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.60 E-value=0.65 Score=36.23 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCCeEEEEccccCCc----------cC
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQC-RVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~----------~~ 128 (291)
.++++|=-|++.|. .+..|++. |++|..+|.+++.++.+.+.. +..+. ++.++.+|+.+.. ..
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47788888887663 45555655 899999999998877666554 34444 6888899998742 11
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
++.|++|.+...
T Consensus 81 ~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 81 FGKLDTVVNAAGI 93 (251)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 579999987643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.36 E-value=0.36 Score=35.38 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=56.5
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEE--EccccCCccC--CCccEEEEc
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEII--VADISTFEME--ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~--~~d~~~~~~~--~~~D~i~~~ 137 (291)
++|.=||+|..+ ++..|++. |.+|+++|.+++.++..++.-.... .+..... .........+ ..+|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 578889998644 44455554 8899999999987665543210000 0011111 1111111111 568999875
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEE
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
-.- .....+++.+...|+++..+++
T Consensus 80 v~~---~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 VPA---IHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp SCG---GGHHHHHHHHGGGCCTTCEEEE
T ss_pred Ech---hHHHHHHHHhhhccCCCCEEEE
Confidence 432 3567899999999999886553
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.15 E-value=0.49 Score=37.10 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCcc---hHHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC
Q 022864 63 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G---~~~~~la~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 128 (291)
.|+++|=.|++.| ..+..|++. |++|+.. ..+.+..+.+.+.....+. ++.++.+|+.+.. ..
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHH
Confidence 5788897776554 345555554 8888864 6777777777777777775 7889999998742 11
Q ss_pred -CCccEEEEccccccccc-------------------HHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEHMKN-------------------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+..|+++.+....+... .-.+.+.+...|+.+|.+++..
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 67899998775543311 1235556666777777655543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.44 E-value=0.2 Score=37.53 Aligned_cols=83 Identities=6% Similarity=0.009 Sum_probs=55.5
Q ss_pred HHHHHcC-CCCCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022864 54 LYCERSR-LEDGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 54 ~~~~~~~-~~~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 126 (291)
.+.+..+ .-.+++||=.|++.|. .+..+++. +++|+.++.+++..+.+.+...... ++.+...|..+..
T Consensus 12 ~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~ 87 (191)
T d1luaa1 12 LVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRA 87 (191)
T ss_dssp HHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHH
T ss_pred HHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHH
Confidence 3434433 3478899999976553 45555655 8899999999998887777665542 3455666665532
Q ss_pred c-CCCccEEEEcccc
Q 022864 127 M-EASYDRIYSIEMF 140 (291)
Q Consensus 127 ~-~~~~D~i~~~~~l 140 (291)
. -+..|+++.+...
T Consensus 88 ~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 88 EAVKGAHFVFTAGAI 102 (191)
T ss_dssp HHTTTCSEEEECCCT
T ss_pred HHhcCcCeeeecCcc
Confidence 1 1678999987543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.70 E-value=0.21 Score=34.86 Aligned_cols=87 Identities=7% Similarity=0.035 Sum_probs=49.0
Q ss_pred EEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----CCccEEEEccc
Q 022864 67 VLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----ASYDRIYSIEM 139 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~D~i~~~~~ 139 (291)
++=+|+ |.++..+++.. .+.+|+.+|.+++.++.++ .. ....+.+|..+...- ..+|.+++...
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~---~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY---ATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TT---CSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----Hh---CCcceeeecccchhhhccCCccccEEEEEcC
Confidence 444555 55555555432 2789999999999765543 22 245677888775321 46787766432
Q ss_pred ccccccHHHHHHHHHhccccCeeEEE
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
- .+....+-.+.+.+.|...++.
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 74 A---NIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp S---CHHHHHHHHHHHHHTTCSEEEE
T ss_pred c---hHHhHHHHHHHHHHcCCCcEEe
Confidence 1 1122333334444556666554
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.68 E-value=0.58 Score=36.72 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~ 127 (291)
.++++|=.|+..|. .+..+++. |++|+.++.+++.++.+.+..+..+. ++.++.+|+.+.. .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57899999987663 45555555 88999999999998888888877765 7888899998753 1
Q ss_pred CCCccEEEEcccc
Q 022864 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~i~~~~~l 140 (291)
.+..|+++.+...
T Consensus 82 ~g~idilinnag~ 94 (258)
T d1ae1a_ 82 DGKLNILVNNAGV 94 (258)
T ss_dssp TSCCCEEEECCCC
T ss_pred CCCcEEEeccccc
Confidence 1467888876544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.48 E-value=0.52 Score=37.00 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 128 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.++..+. ++..+.+|+.+.. ..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47788888877653 45555655 89999999999999888888777665 7888999998742 11
Q ss_pred CCccEEEEcc
Q 022864 129 ASYDRIYSIE 138 (291)
Q Consensus 129 ~~~D~i~~~~ 138 (291)
+..|+++.+.
T Consensus 81 g~iDilVnna 90 (260)
T d1zema1 81 GKIDFLFNNA 90 (260)
T ss_dssp SCCCEEEECC
T ss_pred CCCCeehhhh
Confidence 6799998765
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.24 E-value=0.45 Score=33.98 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=55.3
Q ss_pred EEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcc
Q 022864 66 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~i~~~~ 138 (291)
+|+=+|+ |..+..+++.. .+..++.+|.+++......+.... .++.++.+|..+... . ...|.|++..
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 4565665 55555555431 278899999998754333332222 257899999988531 1 6788888753
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.- ...........+.+.|...++...
T Consensus 80 ~~---d~~n~~~~~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 80 DN---DADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp SC---HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred cc---HHHHHHHHHHHHHhCCCCceEEEE
Confidence 21 112223334455677887776654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.00 E-value=0.93 Score=35.40 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC-HHHHHHHHHHHHH-hCCCCeEEEEccccCCcc----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRV-LELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s-~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~---------- 127 (291)
.++++|=-|++.|. .+..|++. |++|+.++.+ +..++.+.+.... .+. ++.++.+|+.+...
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHHHHHHHHHTS-CEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 46788876776653 44555555 8999999986 5555555554433 343 78899999988531
Q ss_pred C-CCccEEEEcccc
Q 022864 128 E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~-~~~D~i~~~~~l 140 (291)
. ++.|++|.+.-.
T Consensus 80 ~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 80 QMGRIDILVNNAGI 93 (260)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HhCCCcEEEeeccc
Confidence 1 679999987643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.23 E-value=0.77 Score=35.96 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~ 127 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.....+. ++.++.+|+.+.. +
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57888988877653 45555554 89999999999999888887777665 6888899997742 1
Q ss_pred CCCccEEEEcccc
Q 022864 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~i~~~~~l 140 (291)
..+.|+++.+.-.
T Consensus 84 ~~~idilvnnAG~ 96 (259)
T d2ae2a_ 84 HGKLNILVNNAGI 96 (259)
T ss_dssp TTCCCEEEECCCC
T ss_pred CCCceEEEECCce
Confidence 1368999987643
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.80 E-value=0.38 Score=30.26 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 105 (291)
+....+++.+||=.|. |.|.+++.+++.. +++|+++.-|++..+.+++
T Consensus 25 ~~~~~~~~~~vlI~gasGgVG~~aiQlak~~-G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 25 DAGVRPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp HTTCCGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH
T ss_pred hhhhccCCCcEEEEeCCCcHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHH
Confidence 3344567888988776 4677888888887 8999999999998777654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.52 E-value=3.6 Score=31.41 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 128 (291)
.++++|=.|++.|. .+..|++. |++|+.++.+.+.++. ..++.+ .++.++.+|+.+... .
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~---~~~~~~-~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAE---AVAALE-AEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHH---HHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHH---HHHHcC-CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57888888888653 44555554 8999999999886543 333334 368889999987431 1
Q ss_pred CCccEEEEccccccccc-------------------HHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEHMKN-------------------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++.|+++.+........ .-.+.+.+...++.++.+.+.+.
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 67999998765433311 12244555667777776655443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.40 E-value=1.7 Score=32.25 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=64.1
Q ss_pred CEEEEEcCCcchH--HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC---------------CCeEEEEc
Q 022864 65 HTVLDVGCGWGSL--SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL---------------QNVEIIVA 120 (291)
Q Consensus 65 ~~vLDiGcG~G~~--~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~---------------~~v~~~~~ 120 (291)
.+|-=||+|+=+. +..++.. |.+|+.+|.+++.++.++++.... +. .++.+. .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred EEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence 4888899986443 3344433 899999999999998887765432 21 012221 2
Q ss_pred cccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 121 d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|..+. -...|+|+=. +.+.++-..++++++.+.++++..+.-.+.+
T Consensus 82 d~~~a--~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 127 (192)
T d1f0ya2 82 DAASV--VHSTDLVVEA-IVENLKVKNELFKRLDKFAAEHTIFASNTSS 127 (192)
T ss_dssp CHHHH--TTSCSEEEEC-CCSCHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred hhHhh--hcccceehhh-cccchhHHHHHHHHHhhhcccCceeeccCcc
Confidence 22211 1456877654 4455556788999999999999887665543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.32 E-value=1.1 Score=34.82 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---------cC--C
Q 022864 64 GHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---------ME--A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~--~ 129 (291)
++.+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+.. .. +
T Consensus 2 gKValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4455666765553 44455544 89999999999998888888777765 7889999998853 11 6
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
+.|+++.+.-
T Consensus 79 ~iDilVnnAG 88 (257)
T d2rhca1 79 PVDVLVNNAG 88 (257)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEeccc
Confidence 7899997653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.05 E-value=0.79 Score=35.81 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~-~ 129 (291)
.++++|=-|++.| ++..+++.+ .|++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+.. .. +
T Consensus 10 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4778886666544 444444332 389999999999998888888877665 7888999998742 11 6
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+++.+.-.
T Consensus 88 ~iDilvnnAG~ 98 (255)
T d1fmca_ 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEeeeCCcC
Confidence 89999987643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.02 E-value=0.81 Score=36.13 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~---------- 127 (291)
.|+++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.....+. .++.++.+|+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 47788888877663 45555554 89999999999998888888877665 368899999988531
Q ss_pred C-CCccEEEEcc
Q 022864 128 E-ASYDRIYSIE 138 (291)
Q Consensus 128 ~-~~~D~i~~~~ 138 (291)
. ++.|+++.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 1 5789999875
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.79 E-value=0.91 Score=36.03 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCcc---hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------C
Q 022864 63 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G---~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 128 (291)
.|+++|=-|++.| ..+..|++. |++|+.+|.+...++.+.+........++.++.+|+.+... .
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 101 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence 4788999988766 345555554 89999999999887776655543322368888999987531 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 102 g~iDilvnnAg~ 113 (294)
T d1w6ua_ 102 GHPNIVINNAAG 113 (294)
T ss_dssp CSCSEEEECCCC
T ss_pred cccchhhhhhhh
Confidence 678999887643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.69 E-value=0.9 Score=35.79 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCc----------c
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE----------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~----------~ 127 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+.+.+. .++.++.+|+.+.. .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46788888877653 45555555 89999999999998888888777654 36889999998743 1
Q ss_pred C-CCccEEEEcc
Q 022864 128 E-ASYDRIYSIE 138 (291)
Q Consensus 128 ~-~~~D~i~~~~ 138 (291)
. ++.|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (272)
T d1xkqa_ 82 QFGKIDVLVNNA 93 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCceEEEeCC
Confidence 1 5789999864
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.67 E-value=1.7 Score=33.51 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC-CCcc
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYD 132 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~-~~~D 132 (291)
.|+++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+ +. +++..+.+|+.+.. .. ++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~---~~--~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVR---EC--PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---HS--TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH---hc--CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 57899999987663 45555555 8999999999887655433 22 36788889988742 12 6899
Q ss_pred EEEEcccc
Q 022864 133 RIYSIEMF 140 (291)
Q Consensus 133 ~i~~~~~l 140 (291)
+++.+...
T Consensus 79 ilVnnAg~ 86 (244)
T d1pr9a_ 79 LLVNNAAV 86 (244)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99987644
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.66 E-value=0.98 Score=35.33 Aligned_cols=75 Identities=16% Similarity=0.006 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~ 127 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.....+. ++..+.+|+.+.. +
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 47788888887664 45555555 89999999999988888877776655 7889999998742 1
Q ss_pred CCCccEEEEcccc
Q 022864 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~i~~~~~l 140 (291)
.+..|+++.+...
T Consensus 84 ~g~idilvnnAG~ 96 (259)
T d1xq1a_ 84 GGKLDILINNLGA 96 (259)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCcccccccccc
Confidence 1468999987643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.63 E-value=0.81 Score=35.63 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~-~ 129 (291)
.++.+|=-|++.| ++..+++.+ .|++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+.. .. +
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4677777786655 444444432 378999999999998888887776665 7889999998842 11 6
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+++.+...
T Consensus 87 ~iDilvnnag~ 97 (251)
T d2c07a1 87 NVDILVNNAGI 97 (251)
T ss_dssp CCCEEEECCCC
T ss_pred Cceeeeecccc
Confidence 89999887644
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=87.62 E-value=0.78 Score=30.05 Aligned_cols=70 Identities=9% Similarity=0.099 Sum_probs=43.0
Q ss_pred CCCCEEEEEcCC-cc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc
Q 022864 62 EDGHTVLDVGCG-WG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~ 138 (291)
....+|.=||.| +| .++..|.++ |.+|+|.|...... .+...+.| +.+..+.-.... ...|+|+.+.
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~---~~~L~~~G---i~v~~g~~~~~i--~~~d~vV~S~ 75 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVV---TQRLAQAG---AKIYIGHAEEHI--EGASVVVVSS 75 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHH---HHHHHHTT---CEEEESCCGGGG--TTCSEEEECT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChh---hhHHHHCC---CeEEECCccccC--CCCCEEEECC
Confidence 456788888753 55 456667776 89999999764321 23333444 445544443322 4679998887
Q ss_pred ccc
Q 022864 139 MFE 141 (291)
Q Consensus 139 ~l~ 141 (291)
.+.
T Consensus 76 AI~ 78 (96)
T d1p3da1 76 AIK 78 (96)
T ss_dssp TSC
T ss_pred CcC
Confidence 663
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.61 E-value=2.6 Score=32.39 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 128 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++...+.. +. ++..+.+|+.+... -
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISDYL---GA-NGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH---GG-GEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHh---CC-CCcEEEEEecCHHHhhhhhhhhhccc
Confidence 46677777776553 44455554 899999999998776655443 22 57788899887421 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 77 g~iDilVnnAg~ 88 (243)
T d1q7ba_ 77 GEVDILVNNAGI 88 (243)
T ss_dssp CSCSEEEECCCC
T ss_pred CCcceehhhhhh
Confidence 679999977533
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=87.52 E-value=1.4 Score=34.40 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=-|++.|. .+..|++. |++|..+|.+++.++.+.+.....+. .++.++.+|+.+... .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 46788888887664 56666665 89999999999988887776665544 368889999987531 1
Q ss_pred -CCccEEEEccc
Q 022864 129 -ASYDRIYSIEM 139 (291)
Q Consensus 129 -~~~D~i~~~~~ 139 (291)
++.|++|.+.-
T Consensus 81 ~G~iDiLVnnAG 92 (258)
T d1iy8a_ 81 FGRIDGFFNNAG 92 (258)
T ss_dssp HSCCSEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 67999998653
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.14 E-value=0.82 Score=35.93 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 128 (291)
.++.+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+..... .++.++.+|+.+.. ..
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889999987664 34555554 899999999998776665554332 36888899998742 11
Q ss_pred CCccEEEEccc
Q 022864 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~i~~~~~ 139 (291)
++.|+++.+.-
T Consensus 81 g~iD~lVnnAG 91 (268)
T d2bgka1 81 GKLDIMFGNVG 91 (268)
T ss_dssp SCCCEEEECCC
T ss_pred CCcceeccccc
Confidence 67899997663
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.09 E-value=1.9 Score=33.43 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+. .+- +..++.+|+.+... .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~---~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAE---LGE-RSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH---HCT-TEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH---hCC-CeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 47788877766552 44455544 89999999999876655443 332 67788899887421 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+.-.
T Consensus 79 g~iDilVnnAG~ 90 (253)
T d1hxha_ 79 GTLNVLVNNAGI 90 (253)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCCeEEecccc
Confidence 678999987644
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.89 E-value=2.1 Score=33.00 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCc----ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------c
Q 022864 63 DGHTVLDVGCGW----GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~----G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~ 127 (291)
.++++|=-|++. |. .+..|++. |++|...+.++...+.+.+.....+ +..++.+|+.+.. .
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~ 82 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKE 82 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHH
Confidence 578999999643 33 55566655 8999999998887776665554443 5677889988742 0
Q ss_pred C-CCccEEEEccc
Q 022864 128 E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ~-~~~D~i~~~~~ 139 (291)
. ++.|+++.+..
T Consensus 83 ~~g~iDilVnnag 95 (256)
T d1ulua_ 83 AFGGLDYLVHAIA 95 (256)
T ss_dssp HHSSEEEEEECCC
T ss_pred hcCCceEEEeccc
Confidence 1 67898887653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=0.18 Score=36.51 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=54.7
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
++|+=+|+|. |. ++..|++. +.+|+.++.++...+.. ...+.+.......-..+.... ..+|+|+..---
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka- 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDFLATSDLLLVTLKA- 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhh----ccccCCccccccccccchhhhhcccceEEEeecc-
Confidence 5889999985 43 45555554 78999999876522110 001111111110001111111 678999885443
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEee
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+....++.+...++++..++...-
T Consensus 74 --~~~~~~~~~l~~~~~~~~~Iv~~qN 98 (167)
T d1ks9a2 74 --WQVSDAVKSLASTLPVTTPILLIHN 98 (167)
T ss_dssp --GGHHHHHHHHHTTSCTTSCEEEECS
T ss_pred --cchHHHHHhhccccCcccEEeeccC
Confidence 3567889999999999988776443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.73 E-value=1.2 Score=33.20 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=27.8
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHH
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIE 104 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~ 104 (291)
++|.=+|+|. |. ++..++++ +.+|+|+|.+++.++..+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLIN 40 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhc
Confidence 4678889984 43 45555555 789999999998776654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.55 E-value=1.3 Score=32.44 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=51.6
Q ss_pred CEEEEEcCCc-chHHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccCCCccEEEEccccc
Q 022864 65 HTVLDVGCGW-GSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~-G~~~~~la~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.+|.=||||. |..-.......++.+++++ |.+++. +++..+..+.+. .. ...|++++......|+|+....-.
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~ll~~~~iD~v~I~tp~~ 77 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK---AKAFATANNYPESTK-IHGSYESLLEDPEIDALYVPLPTS 77 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH---HHHHHHHTTCCTTCE-EESSHHHHHHCTTCCEEEECCCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccc---cccchhcccccccee-ecCcHHHhhhccccceeeecccch
Confidence 3677899994 4433333445568888875 888764 333344455432 33 346666654345689988654321
Q ss_pred ccccHHHHHHHHHhccccCeeEEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.-++-+..+|+.|=-+++.
T Consensus 78 ------~h~~~~~~~l~~g~~v~~E 96 (184)
T d1ydwa1 78 ------LHVEWAIKAAEKGKHILLE 96 (184)
T ss_dssp ------GHHHHHHHHHTTTCEEEEC
T ss_pred ------hhcchhhhhhhccceeecc
Confidence 1133355556666555553
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.44 E-value=0.12 Score=40.99 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=38.4
Q ss_pred EEEEccccCCc--c-CCCccEEEEcccccc-----------cccHHHHHHHHHhccccCeeEEEEee
Q 022864 116 EIIVADISTFE--M-EASYDRIYSIEMFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 116 ~~~~~d~~~~~--~-~~~~D~i~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++.+|..+.. . ++++|+|+...++.. +......+.++.++|||+|.+++...
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 46677776642 2 378999999887642 22346788899999999999888543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.32 E-value=1.2 Score=34.91 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCc---------c-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE---------M- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~---------~- 127 (291)
.++.+|=-|++.|. .+..|++. |++|..+|.+++.++.+.+.....+. .++.++.+|+.+.. .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46677777776553 34455544 89999999999998888887777654 35899999998742 1
Q ss_pred C-CCccEEEEcc
Q 022864 128 E-ASYDRIYSIE 138 (291)
Q Consensus 128 ~-~~~D~i~~~~ 138 (291)
. ++.|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 1 6789998764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=86.29 E-value=3.1 Score=32.06 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC
Q 022864 62 EDGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 128 (291)
-.|+++|=-|++.|. .+..|++. |++|..+|.+++..+.+ +.. +..++.+|+.+.. ..
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~----~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEVA----EAI---GGAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHHH----HHH---TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH----HHc---CCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 357889988876653 45555555 89999999998754433 222 3567789998742 11
Q ss_pred -CCccEEEEccc
Q 022864 129 -ASYDRIYSIEM 139 (291)
Q Consensus 129 -~~~D~i~~~~~ 139 (291)
++.|+++.+.-
T Consensus 74 ~G~iDiLVnnAG 85 (248)
T d2d1ya1 74 LGRVDVLVNNAA 85 (248)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCeEEEeCc
Confidence 68999987653
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.16 E-value=4.4 Score=30.96 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCc--c---hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------
Q 022864 62 EDGHTVLDVGCGW--G---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---------- 126 (291)
Q Consensus 62 ~~~~~vLDiGcG~--G---~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------- 126 (291)
-.++++|=-|++. | ..+..|++. |++|+.++.+++..+.+.+.....+ +......|..+..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHhhcC--CcceeecccchHHHHHHHHHHhh
Confidence 3578999988755 4 255666665 8999999999887776666555544 3455566655431
Q ss_pred -cCCCccEEEEcc
Q 022864 127 -MEASYDRIYSIE 138 (291)
Q Consensus 127 -~~~~~D~i~~~~ 138 (291)
.....|.++.+.
T Consensus 79 ~~~~~~d~~v~~a 91 (258)
T d1qsga_ 79 KVWPKFDGFVHSI 91 (258)
T ss_dssp TTCSSEEEEEECC
T ss_pred hcccccceEEEee
Confidence 115678888764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=84.51 E-value=3.9 Score=31.18 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=50.1
Q ss_pred EEEEcCCcch---HHHHHHHHCCCCE-------EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------
Q 022864 67 VLDVGCGWGS---LSLYIAQKYSNCK-------ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------- 127 (291)
Q Consensus 67 vLDiGcG~G~---~~~~la~~~~~~~-------v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------- 127 (291)
||=-|++.|. .+..|++. |++ |..++.+++.++...+.++..+. ++.++.+|+.+...
T Consensus 4 vlITGas~GIG~aia~~la~~--G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARA--ARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHH--TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHh--CccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHH
Confidence 4555666553 44555655 554 89999999988888777776664 68889999988531
Q ss_pred C--CCccEEEEcccc
Q 022864 128 E--ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~--~~~D~i~~~~~l 140 (291)
. +..|+++.+...
T Consensus 81 ~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGV 95 (240)
T ss_dssp HHTSCCSEEEECCCC
T ss_pred HHcCCcceeeccccc
Confidence 1 679999987644
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=84.04 E-value=0.59 Score=30.23 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=38.8
Q ss_pred CEEEEEc-CCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccCCCccEEEEcccc
Q 022864 65 HTVLDVG-CGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiG-cG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~D~i~~~~~l 140 (291)
+||-=+| ||.|- ++..|.++ |..|+|.|..+... .+..++.|+ .+..+ +...+ ...|+||.+..+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~--G~~VsGSD~~~~~~---t~~L~~~Gi---~i~~gh~~~~i---~~~d~vV~SsAI 70 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN--GNDVYGSNIEETER---TAYLRKLGI---PIFVPHSADNW---YDPDLVIKTPAV 70 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSSCCHH---HHHHHHTTC---CEESSCCTTSC---CCCSEEEECTTC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC--CCeEEEEeCCCChh---HHHHHHCCC---eEEeeeccccc---CCCCEEEEecCc
Confidence 3555555 34443 45555555 89999999886432 234556665 33333 22222 457999988776
Q ss_pred c
Q 022864 141 E 141 (291)
Q Consensus 141 ~ 141 (291)
.
T Consensus 71 ~ 71 (89)
T d1j6ua1 71 R 71 (89)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.94 E-value=3.4 Score=31.63 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC-CCcc
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYD 132 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~-~~~D 132 (291)
.|+++|=-|++.|. .+..|++. |++|+.+|.+++.++...+ +. .++..+.+|+.+.. .. ++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~---~~--~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAK---EC--PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---HS--TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH---hc--CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 47889988877663 45555554 8999999999876544332 22 36788889998743 11 6789
Q ss_pred EEEEccc
Q 022864 133 RIYSIEM 139 (291)
Q Consensus 133 ~i~~~~~ 139 (291)
+++.+..
T Consensus 77 ilVnnAg 83 (242)
T d1cyda_ 77 LLVNNAA 83 (242)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9998753
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.84 E-value=1.9 Score=33.70 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.|+++|=-|++.|. ++..|+++ |++|+.++.+.+.++.+.+.........+.....|..+... .
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 57889988888773 55566655 89999999999998888776655544467788888776321 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+++.+...
T Consensus 91 g~~~~li~nag~ 102 (269)
T d1xu9a_ 91 GGLDMLILNHIT 102 (269)
T ss_dssp TSCSEEEECCCC
T ss_pred CCcccccccccc
Confidence 578888876644
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=83.24 E-value=1.3 Score=32.71 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred CEEEEEcCCcchHHH--HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC----------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGSLSL--YIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~--~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~ 125 (291)
.+|-=||+|+=+.++ .++.. |.+|+.+|.+++.++.+.++.... +. .++.. ..+..++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGDF 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTTG
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccccccc
Confidence 467889998644433 34433 899999999999988877765422 10 11222 2222222
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
...|+|+= .+.+.+.-..+++.++.+.++|+-++.-.+.+.
T Consensus 82 ---~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l 122 (186)
T d1wdka3 82 ---GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTSTI 122 (186)
T ss_dssp ---GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred ---cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEeccccc
Confidence 45688775 455666667889999999999999887655544
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.71 E-value=2.4 Score=32.78 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=50.8
Q ss_pred EEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-CCcc
Q 022864 67 VLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME-ASYD 132 (291)
Q Consensus 67 vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~-~~~D 132 (291)
+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+.. .. ++.|
T Consensus 4 alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3555665442 34444544 89999999999998888887777765 7888999998853 11 6799
Q ss_pred EEEEccc
Q 022864 133 RIYSIEM 139 (291)
Q Consensus 133 ~i~~~~~ 139 (291)
++|.+.-
T Consensus 81 ilVnnAG 87 (255)
T d1gega_ 81 VIVNNAG 87 (255)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9997653
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=81.70 E-value=0.66 Score=37.63 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=43.8
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C-CCccEEEE
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-ASYDRIYS 136 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-~~~D~i~~ 136 (291)
++||=.| |+|..+..+++.. .+.+|+++|..................+++.++++|+.+... . .++|+|+-
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 79 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 4666665 6788777776542 378999998421111111111111112479999999988542 1 46899986
Q ss_pred cccc
Q 022864 137 IEMF 140 (291)
Q Consensus 137 ~~~l 140 (291)
....
T Consensus 80 lAa~ 83 (338)
T d1udca_ 80 FAGL 83 (338)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 5443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.66 E-value=0.37 Score=38.66 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=40.5
Q ss_pred eEEEEccccCCc---cCCCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 115 VEIIVADISTFE---MEASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 115 v~~~~~d~~~~~---~~~~~D~i~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
=.++++|..+.. +++++|+|+...++... ......+..+.++|+|+|.+++....
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 367888887632 23889999999876422 22466899999999999999886543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=81.63 E-value=1.3 Score=34.52 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQC-RVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+.+.++.+.+.. +..+. ++.++.+|+.+... .
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888876553 45555554 899999999887766555544 33454 78889999987531 1
Q ss_pred -CCccEEEEcccc
Q 022864 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 85 ~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 85 LGPISGLIANAGV 97 (260)
T ss_dssp SCSEEEEEECCCC
T ss_pred hCCCcEecccccc
Confidence 689998887643
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=81.09 E-value=1.7 Score=33.68 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 128 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.... ..++.++.+|+.+... .
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCC--CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47788877766553 34455554 89999999999877766655432 1378899999987531 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|++|.+...
T Consensus 81 G~iDiLVnnAg~ 92 (251)
T d1zk4a1 81 GPVSTLVNNAGI 92 (251)
T ss_dssp SSCCEEEECCCC
T ss_pred CCceEEEecccc
Confidence 679999887644
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.15 E-value=0.29 Score=37.97 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=35.9
Q ss_pred EEEccccCCc--c-CCCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 117 IIVADISTFE--M-EASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 117 ~~~~d~~~~~--~-~~~~D~i~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++++|..+.. . ++++|+|+...++..- ......++.+.++|+|||.+++..
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 6678876632 2 3789999998876321 123457889999999999887643
|