Citrus Sinensis ID: 022922

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
cccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccHHHHHHHccccEEEcccccccEEEEEccccccEEEccccccEEEEEEccccccccccccccccccccccEEEEEEccccEEEEcccccccEEEEEccccccccccccccccccccccHHHHHHHHccccccHHHHHHccccEEccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHccccccccccccccEEEccEEcEEEcccccccccHHHHHHHHHHcc
ccccccHHHHHccccHHccccEEEEEEEEcccEEEccccHHHHHHHHcccEEEEEHHHcEEEEEEcccccEEEEEEcccEEEEEEcccccccccccccccccccccccEEEEEEccccEEEEccccHccEEEEcccccccccccccccccccccccHHHHHHHHcccccEHHHHHHcccccccccHHHHHHHHHHHccccccEHHHccHHHHHHHHHHHHHHHHcccccHHHccccccccccEEEcccccccccccccEEEEEEEcEEccccEEEEccHHHHHHHHHHHc
MPELPEVEAARRAIEEHCIGKKIVKSIIaddnkvidgvsasdfEASVLGKAILSAHRKGKnlwlrldsppfpsfqfgmtgAIYIKGVAVTQykrsavkdtdewpskYSKFFVELddglelsftdKRRFAKVrllndptsvppiselgpdallepmtvdeftDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQakihplqtavsLSKESCATLLKCIKEVREALGVSLQFYkcyfakpyvhkkhrENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSavkdtdewpskYSKFFVELDDGLELSFTDKRRFAKVrllndptsvppiselgpdallEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFakpyvhkkhreNKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
************AIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLND*************ALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLM****
MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
********AARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
**ELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
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MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLNGYFIFDGAKSLEKLMVRYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query290 2.2.26 [Sep-21-2011]
O80358390 Formamidopyrimidine-DNA g yes no 0.772 0.574 0.834 1e-108
Q8NNV7286 Formamidopyrimidine-DNA g yes no 0.765 0.776 0.354 2e-27
A4QFD9286 Formamidopyrimidine-DNA g yes no 0.710 0.720 0.365 4e-27
A5UUN1273 Formamidopyrimidine-DNA g yes no 0.824 0.875 0.306 2e-26
A9B0X2273 Formamidopyrimidine-DNA g yes no 0.824 0.875 0.330 2e-26
Q8FP17285 Formamidopyrimidine-DNA g yes no 0.720 0.733 0.341 8e-26
B2HJJ6292 Formamidopyrimidine-DNA g yes no 0.813 0.808 0.323 2e-25
A0PQ49292 Formamidopyrimidine-DNA g yes no 0.813 0.808 0.320 3e-25
Q03GC2275 Formamidopyrimidine-DNA g yes no 0.710 0.749 0.340 3e-25
A8L594291 Formamidopyrimidine-DNA g yes no 0.803 0.800 0.300 1e-24
>sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase OS=Arabidopsis thaliana GN=FPG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/224 (83%), Positives = 202/224 (90%)

Query: 1   MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
           MPELPEVEAARRAIEE+C+GKKI + IIADDNKVI G+S SDF+ S+LGK I+SA RKGK
Sbjct: 1   MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGK 60

Query: 61  NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
           NLWL LDSPPFPSFQFGM GAIYIKGVAVT+YKRSAVKD++EWPSKYSKFFVELDDGLEL
Sbjct: 61  NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL 120

Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
           SFTDKRRFAKVRLL +PTSV PISELGPDALLEPMTVDEF +SL+KKKITIK LLLDQ Y
Sbjct: 121 SFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGY 180

Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVRE 224
           ISGIGNW+ADEVLYQA+IHPLQTA SLSKE C  L   IKEV E
Sbjct: 181 ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIE 224
Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Can process efficiently 4,6-diamino-5-formamidopyrimidine (FapyA), 2,6-diamino-4- hydroxy-5-formamidopyrimidine (FapyG) and the further oxidation products of 8-oxoguanine (8-oxoG), such as guanidinohydantoin and spiroiminodihydantoin. Has marginal activity towards 8-oxoG. Has AP (apurinic/apyrimidinic) lyase activity. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|Q8NNV7|FPG_CORGL Formamidopyrimidine-DNA glycosylase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=mutM PE=3 SV=3 Back     alignment and function description
>sp|A4QFD9|FPG_CORGB Formamidopyrimidine-DNA glycosylase OS=Corynebacterium glutamicum (strain R) GN=mutM PE=3 SV=1 Back     alignment and function description
>sp|A5UUN1|FPG_ROSS1 Formamidopyrimidine-DNA glycosylase OS=Roseiflexus sp. (strain RS-1) GN=mutM PE=3 SV=1 Back     alignment and function description
>sp|A9B0X2|FPG_HERA2 Formamidopyrimidine-DNA glycosylase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=mutM PE=3 SV=1 Back     alignment and function description
>sp|Q8FP17|FPG_COREF Formamidopyrimidine-DNA glycosylase OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) GN=mutM PE=3 SV=3 Back     alignment and function description
>sp|B2HJJ6|FPG_MYCMM Formamidopyrimidine-DNA glycosylase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mutM PE=3 SV=1 Back     alignment and function description
>sp|A0PQ49|FPG_MYCUA Formamidopyrimidine-DNA glycosylase OS=Mycobacterium ulcerans (strain Agy99) GN=mutM PE=3 SV=1 Back     alignment and function description
>sp|Q03GC2|FPG_PEDPA Formamidopyrimidine-DNA glycosylase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=mutM PE=3 SV=1 Back     alignment and function description
>sp|A8L594|FPG_FRASN Formamidopyrimidine-DNA glycosylase OS=Frankia sp. (strain EAN1pec) GN=mutM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
225442888 403 PREDICTED: formamidopyrimidine-DNA glyco 0.772 0.555 0.834 1e-110
297743498305 unnamed protein product [Vitis vinifera] 0.765 0.727 0.837 1e-109
255553261 403 formamidopyrimidine-DNA glycosylase, put 0.872 0.627 0.752 1e-107
3820620390 putative formamidopyrimidine-DNA glycosy 0.772 0.574 0.834 1e-106
18404050390 formamidopyrimidine-DNA glycosylase [Ara 0.772 0.574 0.834 1e-106
400261073310 Chain A, Crystal Structure Of Arabidopsi 0.934 0.874 0.717 1e-105
357455291 424 Formamidopyrimidine-DNA glycosylase [Med 0.765 0.523 0.819 1e-105
30695252274 formamidopyrimidine-DNA glycosylase [Ara 0.765 0.810 0.837 1e-105
356547444 399 PREDICTED: formamidopyrimidine-DNA glyco 0.772 0.561 0.808 1e-104
400261071297 Chain A, Crystal Structure Of Arabidopsi 0.768 0.750 0.825 1e-103
>gi|225442888|ref|XP_002263635.1| PREDICTED: formamidopyrimidine-DNA glycosylase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/224 (83%), Positives = 208/224 (92%)

Query: 1   MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
           MPELPEVEAARRA+EEHC+GKKI K++IA+D+KVIDGVS SDFEAS+LGK I+SAHRKGK
Sbjct: 1   MPELPEVEAARRAVEEHCVGKKITKAVIANDSKVIDGVSPSDFEASLLGKTIVSAHRKGK 60

Query: 61  NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
           N+WL+LDSPPFPSFQFGM GA+YIKGVAVT+YKRSAVKDTDEWPSKYSK F+ELDDGLEL
Sbjct: 61  NMWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVKDTDEWPSKYSKLFIELDDGLEL 120

Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
           SFTDKRRFAKVRLL DP SVPPISELGPDALLEPMT+DEF  SLSKKKI IKALLLDQSY
Sbjct: 121 SFTDKRRFAKVRLLEDPASVPPISELGPDALLEPMTIDEFIKSLSKKKIAIKALLLDQSY 180

Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVRE 224
           I+GIGNW+ADEVLY A+IHPLQ A SL++ESC TL +CIK+V E
Sbjct: 181 IAGIGNWLADEVLYHARIHPLQVASSLTRESCETLHQCIKQVIE 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743498|emb|CBI36365.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255553261|ref|XP_002517673.1| formamidopyrimidine-DNA glycosylase, putative [Ricinus communis] gi|223543305|gb|EEF44837.1| formamidopyrimidine-DNA glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|3820620|gb|AAC97952.1| putative formamidopyrimidine-DNA glycosylase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18404050|ref|NP_564608.1| formamidopyrimidine-DNA glycosylase [Arabidopsis thaliana] gi|5903053|gb|AAD55612.1|AC008016_22 Identical to gb|AB010690 mutM homologue-1 (formamidopyrimidine-DNA glycosylase 1) from Arabidopsis thaliana. EST gb|Z18192 comes from this gene [Arabidopsis thaliana] gi|3550982|dbj|BAA32702.1| AtMMH-1 [Arabidopsis thaliana] gi|195947437|gb|ACG58696.1| At1g52500 [Arabidopsis thaliana] gi|332194693|gb|AEE32814.1| formamidopyrimidine-DNA glycosylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|400261073|pdb|3TWL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fpg gi|400261074|pdb|3TWM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fpg gi|400261075|pdb|3TWM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fpg Back     alignment and taxonomy information
>gi|357455291|ref|XP_003597926.1| Formamidopyrimidine-DNA glycosylase [Medicago truncatula] gi|355486974|gb|AES68177.1| Formamidopyrimidine-DNA glycosylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|30695252|ref|NP_849798.1| formamidopyrimidine-DNA glycosylase [Arabidopsis thaliana] gi|5903054|gb|AAD55613.1|AC008016_23 Identical to gb|AB010690 mutM homologue-2 (formamidopyrimidine-DNA glycosylase 1) from Arabidopsis thaliana. EST gb|Z18192 comes from this gene [Arabidopsis thaliana] gi|3550983|dbj|BAA32703.1| AtMMH-2 [Arabidopsis thaliana] gi|3820622|gb|AAC97953.1| putative formamidopyrimidine-DNA glycosylase 2 [Arabidopsis thaliana] gi|332194694|gb|AEE32815.1| formamidopyrimidine-DNA glycosylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356547444|ref|XP_003542122.1| PREDICTED: formamidopyrimidine-DNA glycosylase-like [Glycine max] Back     alignment and taxonomy information
>gi|400261071|pdb|3TWK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fpg gi|400261072|pdb|3TWK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fpg Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
TAIR|locus:2035195 390 MMH-1 "MUTM homolog-1" [Arabid 0.872 0.648 0.756 6.6e-97
ASPGD|ASPL0000009569363 AN3629 [Emericella nidulans (t 0.855 0.683 0.375 1.3e-36
TIGR_CMR|CHY_1649263 CHY_1649 "formamidopyrimidine- 0.479 0.528 0.335 8.5e-25
TIGR_CMR|DET_1389270 DET_1389 "formamidopyrimidine- 0.741 0.796 0.343 4.8e-23
TIGR_CMR|GSU_0997271 GSU_0997 "formamidopyrimidine- 0.720 0.771 0.331 4.3e-22
UNIPROTKB|P64150289 fpg1 "Formamidopyrimidine-DNA 0.724 0.726 0.323 2.8e-18
UNIPROTKB|P05523269 mutM [Escherichia coli K-12 (t 0.410 0.442 0.327 1.9e-17
TIGR_CMR|BA_4830276 BA_4830 "formamidopyrimidine-D 0.672 0.706 0.295 4.1e-17
TIGR_CMR|SO_4726271 SO_4726 "formamidopyrimidine-D 0.786 0.841 0.279 2.9e-16
TIGR_CMR|APH_0411268 APH_0411 "formamidopyrimidine- 0.575 0.623 0.316 6e-16
TAIR|locus:2035195 MMH-1 "MUTM homolog-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 193/255 (75%), Positives = 213/255 (83%)

Query:     1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
             MPELPEVEAARRAIEE+C+GKKI + IIADDNKVI G+S SDF+ S+LGK I+SA RKGK
Sbjct:     1 MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGK 60

Query:    61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
             NLWL LDSPPFPSFQFGM GAIYIKGVAVT+YKRSAVKD++EWPSKYSKFFVELDDGLEL
Sbjct:    61 NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL 120

Query:   121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
             SFTDKRRFAKVRLL +PTSV PISELGPDALLEPMTVDEF +SL+KKKITIK LLLDQ Y
Sbjct:   121 SFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGY 180

Query:   181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKP 240
             ISGIGNW+ADEVLYQA+IHPLQTA SLSKE C  L   IKEV E   V +      F   
Sbjct:   181 ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEK-AVEVDADSSQFPSY 239

Query:   241 YVHKKHRENKICRLF 255
             ++   +RE K  + F
Sbjct:   240 WIFH-NREKKPGKAF 253
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA;IDA
GO:0006284 "base-excision repair" evidence=IEA
GO:0006289 "nucleotide-excision repair" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008534 "oxidized purine nucleobase lesion DNA N-glycosylase activity" evidence=IEA
GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA
GO:0019104 "DNA N-glycosylase activity" evidence=ISS;IDA
GO:0000741 "karyogamy" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0006979 "response to oxidative stress" evidence=TAS
ASPGD|ASPL0000009569 AN3629 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1649 CHY_1649 "formamidopyrimidine-DNA glycosylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1389 DET_1389 "formamidopyrimidine-DNA glycosylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0997 GSU_0997 "formamidopyrimidine-DNA glycosylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P64150 fpg1 "Formamidopyrimidine-DNA glycosylase 1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|P05523 mutM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4830 BA_4830 "formamidopyrimidine-DNA glycosylase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4726 SO_4726 "formamidopyrimidine-DNA glycosylase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0411 APH_0411 "formamidopyrimidine-DNA glycosylase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8L594FPG_FRASN4, ., 2, ., 9, 9, ., 1, 80.30080.80340.8006yesno
A4TE57FPG_MYCGI4, ., 2, ., 9, 9, ., 1, 80.31110.81720.8404yesno
A3PXU1FPG_MYCSJ4, ., 2, ., 9, 9, ., 1, 80.32020.81720.8006yesno
O80358FPG_ARATH4, ., 2, ., 9, 9, ., 1, 80.83480.77240.5743yesno
Q88WV4FPG_LACPL4, ., 2, ., 9, 9, ., 1, 80.30410.81720.8649yesno
A9B0X2FPG_HERA24, ., 2, ., 9, 9, ., 1, 80.33070.82410.8754yesno
A0QV21FPG_MYCS24, ., 2, ., 9, 9, ., 1, 80.32590.81720.8315yesno
A0PQ49FPG_MYCUA4, ., 2, ., 9, 9, ., 1, 80.32020.81370.8082yesno
B2HJJ6FPG_MYCMM4, ., 2, ., 9, 9, ., 1, 80.32380.81370.8082yesno
Q1BAM5FPG_MYCSS4, ., 2, ., 9, 9, ., 1, 80.31670.81720.8006yesno
A1UED7FPG_MYCSK4, ., 2, ., 9, 9, ., 1, 80.31670.81720.8006yesno
A5UUN1FPG_ROSS14, ., 2, ., 9, 9, ., 1, 80.30650.82410.8754yesno
A0QJ66FPG_MYCA14, ., 2, ., 9, 9, ., 1, 80.32350.81370.8339yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.990.766
4th Layer4.2.99.180.824
3rd Layer3.2.20.766
3rd Layer3.2.2.230.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
TIGR00577272 TIGR00577, fpg, formamidopyrimidine-DNA glycosylas 2e-85
cd08972137 cd08972, PF_Nei_N, N-terminal domain of the plant 3e-67
PRK01103274 PRK01103, PRK01103, formamidopyrimidine/5-formylur 3e-53
COG0266273 COG0266, Nei, Formamidopyrimidine-DNA glycosylase 9e-48
pfam01149117 pfam01149, Fapy_DNA_glyco, Formamidopyrimidine-DNA 1e-33
PRK14810272 PRK14810, PRK14810, formamidopyrimidine-DNA glycos 4e-30
PRK14811269 PRK14811, PRK14811, formamidopyrimidine-DNA glycos 8e-30
PRK13945282 PRK13945, PRK13945, formamidopyrimidine-DNA glycos 1e-29
smart00898115 smart00898, Fapy_DNA_glyco, Formamidopyrimidine-DN 6e-29
pfam0683193 pfam06831, H2TH, Formamidopyrimidine-DNA glycosyla 7e-29
cd08966120 cd08966, EcFpg-like_N, N-terminal domain of Escher 7e-27
cd08773117 cd08773, FpgNei_N, N-terminal domain of Fpg (forma 3e-23
cd08976117 cd08976, BaFpgNei_N_4, Uncharacterized bacterial s 2e-21
PRK10445263 PRK10445, PRK10445, endonuclease VIII; Provisional 4e-12
cd08973122 cd08973, BaFpgNei_N_1, Uncharacterized bacterial s 8e-08
>gnl|CDD|233031 TIGR00577, fpg, formamidopyrimidine-DNA glycosylase (fpg) Back     alignment and domain information 
 Score =  256 bits (656), Expect = 2e-85
 Identities = 91/239 (38%), Positives = 124/239 (51%), Gaps = 20/239 (8%)

Query: 2   PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKN 61
           PELPEVE  RR +E   +GK I    +   N V+      D +  +LG+ ILS  R+GK 
Sbjct: 1   PELPEVETVRRGLEPLVLGKTIKSVEVVLRNPVLRPAGPEDLQKRLLGQTILSIQRRGKY 60

Query: 62  LWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELS 121
           L   LD            GA+        +Y+  AV D    P K+       DDG EL 
Sbjct: 61  LLFELDD-----------GALVSHLRMEGKYRLEAVPDA---PEKHDHVDFLFDDGTELR 106

Query: 122 FTDKRRFAKVRLLNDPT--SVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQS 179
           + D RRF    L +     +VP +++LGP+ L E  T +   + L+K K  IK  LLDQ 
Sbjct: 107 YHDPRRFGTWLLFDRGQVENVPLLAKLGPEPLSEDFTAEYLFEKLAKSKRKIKTALLDQR 166

Query: 180 YISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV-REAL---GVSLQFYK 234
            ++GIGN  ADEVL++A IHP + A SLSKE C  L + IKEV R+A+   G +++ Y 
Sbjct: 167 LVAGIGNIYADEVLFRAGIHPERLANSLSKEECELLHRAIKEVLRKAIEMGGTTIRDYS 225

All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 272
>gnl|CDD|176806 cd08972, PF_Nei_N, N-terminal domain of the plant and fungal Nei and related proteins Back     alignment and domain information
>gnl|CDD|234899 PRK01103, PRK01103, formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated Back     alignment and domain information
>gnl|CDD|223344 COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|216330 pfam01149, Fapy_DNA_glyco, Formamidopyrimidine-DNA glycosylase N-terminal domain Back     alignment and domain information
>gnl|CDD|173271 PRK14810, PRK14810, formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|184831 PRK14811, PRK14811, formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|184410 PRK13945, PRK13945, formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|214895 smart00898, Fapy_DNA_glyco, Formamidopyrimidine-DNA glycosylase N-terminal domain Back     alignment and domain information
>gnl|CDD|115485 pfam06831, H2TH, Formamidopyrimidine-DNA glycosylase H2TH domain Back     alignment and domain information
>gnl|CDD|176800 cd08966, EcFpg-like_N, N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases Back     alignment and domain information
>gnl|CDD|176798 cd08773, FpgNei_N, N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information
>gnl|CDD|176810 cd08976, BaFpgNei_N_4, Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information
>gnl|CDD|182467 PRK10445, PRK10445, endonuclease VIII; Provisional Back     alignment and domain information
>gnl|CDD|176807 cd08973, BaFpgNei_N_1, Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 290
COG0266273 Nei Formamidopyrimidine-DNA glycosylase [DNA repli 100.0
PRK13945282 formamidopyrimidine-DNA glycosylase; Provisional 100.0
PRK01103274 formamidopyrimidine/5-formyluracil/ 5-hydroxymethy 100.0
TIGR00577272 fpg formamidopyrimidine-DNA glycosylase (fpg). All 100.0
PRK14811269 formamidopyrimidine-DNA glycosylase; Provisional 100.0
PRK14810272 formamidopyrimidine-DNA glycosylase; Provisional 100.0
PRK10445263 endonuclease VIII; Provisional 100.0
cd08972137 PF_Nei_N N-terminal domain of the plant and fungal 100.0
cd08976117 BaFpgNei_N_4 Uncharacterized bacterial subgroup of 100.0
cd08966120 EcFpg-like_N N-terminal domain of Escherichia coli 100.0
PF01149116 Fapy_DNA_glyco: Formamidopyrimidine-DNA glycosylas 100.0
cd08967131 MeNeil1_N N-terminal domain of metazoan Nei-like g 99.97
cd08773117 FpgNei_N N-terminal domain of Fpg (formamidopyrimi 99.97
cd08973122 BaFpgNei_N_1 Uncharacterized bacterial subgroup of 99.97
PF0683192 H2TH: Formamidopyrimidine-DNA glycosylase H2TH dom 99.97
cd08975117 BaFpgNei_N_3 Uncharacterized bacterial subgroup of 99.96
cd08971114 AcNei2_N N-terminal domain of the actinomycetal Ne 99.96
cd0897498 BaFpgNei_N_2 Uncharacterized bacterial subgroup of 99.95
cd08965115 EcNei-like_N N-terminal domain of Escherichia coli 99.94
cd08970110 AcNei1_N N-terminal domain of the actinomycetal Ne 99.94
cd08968126 MeNeil2_N N-terminal domain of metazoan Nei-like g 99.89
cd08969140 MeNeil3_N N-terminal domain of metazoan Nei-like g 99.67
PF05833 455 FbpA: Fibronectin-binding protein A N-terminus (Fb 98.12
COG1293 564 Predicted RNA-binding protein homologous to eukary 96.92
PRK05179122 rpsM 30S ribosomal protein S13; Validated 96.91
PRK04184 535 DNA topoisomerase VI subunit B; Validated 96.76
PF00416107 Ribosomal_S13: Ribosomal protein S13/S18; InterPro 96.62
COG0099121 RpsM Ribosomal protein S13 [Translation, ribosomal 96.56
PF0682730 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; 96.47
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 96.13
PTZ00134154 40S ribosomal protein S18; Provisional 95.83
CHL00137122 rps13 ribosomal protein S13; Validated 95.81
TIGR03631113 bact_S13 30S ribosomal protein S13. This model des 95.36
TIGR03629144 arch_S13P archaeal ribosomal protein S13P. This mo 95.14
PRK04053149 rps13p 30S ribosomal protein S13P; Reviewed 95.1
PF0311928 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f 93.92
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 91.14
PF0667741 Auto_anti-p27: Sjogren's syndrome/scleroderma auto 90.48
COG1645131 Uncharacterized Zn-finger containing protein [Gene 89.73
KOG3311152 consensus Ribosomal protein S18 [Translation, ribo 89.39
PRK00420112 hypothetical protein; Validated 89.27
TIGR03847177 conserved hypothetical protein. The conserved hypo 80.02
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-77  Score=545.12  Aligned_cols=256  Identities=30%  Similarity=0.442  Sum_probs=235.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceE
Q 022922            1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG   80 (290)
Q Consensus         1 MPELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG   80 (290)
                      ||||||||++++.|++.+.|++|++|++. .|++.++.+ ++|...|.|++|++|.||||||+++|+++.+|++||||+|
T Consensus         1 MPELPEVetv~rgL~~~~~G~~I~~v~~~-~p~l~~~~~-~~~~~~L~G~~I~~v~rRgKyLl~~l~g~~~Li~HLgM~G   78 (273)
T COG0266           1 MPELPEVETVRRGLEPHLVGKTITRVEVR-RPRLRWPDS-EEFAERLTGQRITSVERRGKYLLIELSGDLTLISHLGMSG   78 (273)
T ss_pred             CCCCcHHHHHHHhhHHHhCCCEEEEEEec-CCceeccCC-HHHHhhcCCcEEeeEecccceEEEEcCCCcEEEEecCcce
Confidence            99999999999999999999999999997 577776554 7999999999999999999999999976669999999999


Q ss_pred             EEEEeecceeccccccccCCCCCCCCeeEEEEEEcCC-ceEEEecCCcccEEEEecCCC-CCCCcccCCCCCCCCCCCHH
Q 022922           81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG-LELSFTDKRRFAKVRLLNDPT-SVPPISELGPDALLEPMTVD  158 (290)
Q Consensus        81 ~l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g-~~L~f~D~R~fG~i~l~~~~~-~~~~l~~LGpDpL~~~f~~~  158 (290)
                      +|++.+.             +.+..+|+|+.|+|+|| ..|+|+|+|+||.|++++..+ ..+.+++||||||+++||++
T Consensus        79 ~~~~~~~-------------~~~~~kH~hv~~~~~~g~~~l~y~D~R~FG~~~~~~~~~~~~~~l~~LGpePl~~~f~~~  145 (273)
T COG0266          79 SLRLEAR-------------GEPDEKHDHVDFVLSDGKDVLRYNDPRRFGTMLLIEDLEEVHPVLAKLGPEPLSDDFDPE  145 (273)
T ss_pred             EEEEecC-------------CCCCCcceEEEEEEcCCceEEEEecCCcCcEEEEecccccccHHHHhcCCCCCccccCHH
Confidence            9999753             23467999999999999 599999999999999998654 67789999999999999999


Q ss_pred             HHHHHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-Hhc-cccc----
Q 022922          159 EFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGV-SLQF----  232 (290)
Q Consensus       159 ~f~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~-~~~~----  232 (290)
                      ++++++++++++||++||||++|||||||||||+||+|||||.+++++||.++++.|+++|+.||.. |+. ++++    
T Consensus       146 ~l~~~l~~~~~~IK~~LLDQ~vvaGvGNIYa~E~Lf~agI~P~~~a~~l~~~~~~~l~~~i~~vl~~ai~~gGtt~r~~~  225 (273)
T COG0266         146 YLAEKLAKKKRRIKTALLDQKVVAGVGNIYADEILFRAGIHPARPAGDLSLAQLALLHEAIKDVLADAIERGGTTLRDFV  225 (273)
T ss_pred             HHHHHHhcCccchHHHhhcCCceecccHHHHHHHHHHcCCCcccCccccCHHHHHHHHHHHHHHHHHHHHhCCCccccee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999 3332    


Q ss_pred             ---cccccCccceeecCCCCCCccccccceeee---ccceeeecc
Q 022922          233 ---YKCYFAKPYVHKKHRENKICRLFKVRLKLM---LTAAAFLLN  271 (290)
Q Consensus       233 ---~~~~~~~~~~~vy~R~g~~C~~Cg~~i~~~---~~~~~~~~~  271 (290)
                         ++.+.|+.+++||+|+|+||++||++|.++   ||+|+||-+
T Consensus       226 ~~~g~~G~fq~~l~VYgR~GepC~~CGt~I~k~~~~gR~t~~CP~  270 (273)
T COG0266         226 NADGKPGYFQQELKVYGRAGEPCRRCGTPIEKIKLGGRSTFYCPV  270 (273)
T ss_pred             ccCCCCCccceeEEEecCCCCCCCccCCEeEEEEEcCCcCEeCCC
Confidence               335679999999999999999999998865   999999975

>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated Back     alignment and domain information
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg) Back     alignment and domain information
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PRK10445 endonuclease VIII; Provisional Back     alignment and domain information
>cd08972 PF_Nei_N N-terminal domain of the plant and fungal Nei and related proteins Back     alignment and domain information
>cd08976 BaFpgNei_N_4 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information
>cd08966 EcFpg-like_N N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases Back     alignment and domain information
>PF01149 Fapy_DNA_glyco: Formamidopyrimidine-DNA glycosylase N-terminal domain; InterPro: IPR012319 This entry represents the catalytic domain of DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents Back     alignment and domain information
>cd08967 MeNeil1_N N-terminal domain of metazoan Nei-like glycosylase 1 (NEIL1) Back     alignment and domain information
>cd08773 FpgNei_N N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information
>cd08973 BaFpgNei_N_1 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents Back     alignment and domain information
>cd08975 BaFpgNei_N_3 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information
>cd08971 AcNei2_N N-terminal domain of the actinomycetal Nei2 and related DNA glycosylases Back     alignment and domain information
>cd08974 BaFpgNei_N_2 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases Back     alignment and domain information
>cd08965 EcNei-like_N N-terminal domain of Escherichia coli Nei/endonuclease VIII and related DNA glycosylases Back     alignment and domain information
>cd08970 AcNei1_N N-terminal domain of the actinomycetal Nei1 and related DNA glycosylases Back     alignment and domain information
>cd08968 MeNeil2_N N-terminal domain of metazoan Nei-like glycosylase 2 (NEIL2) Back     alignment and domain information
>cd08969 MeNeil3_N N-terminal domain of metazoan Nei-like glycosylase 3 (NEIL3) Back     alignment and domain information
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO Back     alignment and domain information
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information
>PRK05179 rpsM 30S ribosomal protein S13; Validated Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PTZ00134 40S ribosomal protein S18; Provisional Back     alignment and domain information
>CHL00137 rps13 ribosomal protein S13; Validated Back     alignment and domain information
>TIGR03631 bact_S13 30S ribosomal protein S13 Back     alignment and domain information
>TIGR03629 arch_S13P archaeal ribosomal protein S13P Back     alignment and domain information
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed Back     alignment and domain information
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Back     alignment and domain information
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only] Back     alignment and domain information
>KOG3311 consensus Ribosomal protein S18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00420 hypothetical protein; Validated Back     alignment and domain information
>TIGR03847 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
3twl_A310 Crystal Structure Of Arabidopsis Thaliana Fpg Lengt 1e-108
3twk_A297 Crystal Structure Of Arabidopsis Thaliana Fpg Lengt 1e-105
1k82_A268 Crystal Structure Of E.Coli Formamidopyrimidine-Dna 1e-19
1ee8_A266 Crystal Structure Of Mutm (Fpg) Protein From Thermu 3e-19
1l1t_A274 Mutm (Fpg) Bound To Abasic-Site Containing Dna Leng 2e-18
1r2y_A274 Mutm (Fpg) Bound To 8-Oxoguanine (Oxog) Containing 5e-18
2f5n_A274 Mutm Crosslinked To Undamaged Dna Sampling A:t Base 2e-17
2f5q_A274 Catalytically Inactive (E3q) Mutm Crosslinked To Ox 4e-17
3gpu_A256 Mutm Encountering An Intrahelical 8-Oxoguanine (Oxo 9e-17
3gpp_A273 Mutm Encountering An Intrahelical 8-Oxoguanine (Oxo 9e-17
3gpx_A257 Sequence-Matched Mutm Interrogation Complex 4 (Ic4) 9e-17
3sar_A273 Mutm Slanted Complex 1 Length = 273 1e-16
3go8_A257 Mutm Encountering An Intrahelical 8-Oxoguanine (Oxo 1e-16
3gp1_A273 Mutm Encountering An Intrahelical 8-Oxoguanine (Oxo 1e-16
3gpy_A273 Sequence-Matched Mutm Lesion Recognition Complex 3 2e-16
3u6c_A273 Mutm Set 1 Apgo Length = 273 2e-16
3jr4_A273 Mutm Interrogating An Extrahelical G Length = 273 2e-16
4g4n_A273 Mutm Containing M77a Mutation Bound To Undamaged Dn 2e-16
1tdz_A272 Crystal Structure Complex Between The Lactococcus L 4e-16
4g4o_A273 Mutm Containing M77a Mutation Bound To Oxog-contain 5e-16
3sas_A273 Mutm Slanted Complex 4 With R112a Mutation Length = 7e-16
4g4q_A273 Mutm Containing F114a Mutation Bound To Undamaged D 1e-15
1pji_A271 Crystal Structure Of Wild Type Lactococcus Lactis F 2e-15
4g4r_A273 Mutm Containing F114a Mutation Bound To Oxog-contai 3e-15
1nnj_A271 Crystal Structure Complex Between The Lactococcus L 2e-14
1kfv_A271 Crystal Structure Of Lactococcus Lactis Formamido-P 5e-14
3a45_A289 Crystal Structure Of Mvnei1_2 Length = 289 1e-11
3a42_A295 Crystal Structure Of Mvnei1 Length = 295 1e-11
3vk7_A295 Crystal Structure Of Dna-glycosylase Bound To Dna C 3e-11
1tdh_A364 Crystal Structure Of Human Endonuclease Viii-Like 1 3e-07
3w0f_A287 Crystal Structure Of Mouse Endonuclease Viii-like 3 4e-04
2oq4_A262 Crystal Structure Of The Dna Repair Enzyme Endonucl 4e-04
1q3c_A262 Crystal Structure Of The Dna Repair Enzyme Endonucl 5e-04
1k3w_A262 Crystal Structure Of A Trapped Reaction Intermediat 5e-04
1q3b_A262 Crystal Structure Of The Dna Repair Enzyme Endonucl 5e-04
>pdb|3TWL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fpg Length = 310 Back     alignment and structure 
Iteration: 1

 Score =  387 bits (993), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/273 (71%), Positives = 217/273 (79%), Gaps = 2/273 (0%)
Query: 1   MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
           MPELPEVEAARRAIEE+C+GKKI + IIADDNKVI G+S SDF+ S+LGK I+SA RKGK
Sbjct: 1   MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGK 60
Query: 61  NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
           NLWL LDSPPFPSFQFGM GAIYIKGVAVT+YKRSAVKD++EWPSKYSKFFVELDDGLEL
Sbjct: 61  NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL 120
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
           SFTDKRRFAKVRLL +PTSV PISELGPDALLEPMTVDEF +SL+KKKITIK LLLDQ Y
Sbjct: 121 SFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGY 180
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREALGVSLQFYKCYFAKP 240
           ISGIGNW+ADEVLYQA+IHPLQTA SLSKE C  L   IKEV E   V +      F   
Sbjct: 181 ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEK-AVEVDADSSQFPSN 239
Query: 241 YVHKKHRENKICRLFKVRLKLMLTAAAFLLNGY 273
           ++   +RE K  + F    K+    A      Y
Sbjct: 240 WIF-HNREKKPGKAFVDGKKIDFITAGGRTTAY 271
>pdb|3TWK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fpg Length = 297 Back     alignment and structure
>pdb|1K82|A Chain A, Crystal Structure Of E.Coli Formamidopyrimidine-Dna Glycosylase (Fpg) Covalently Trapped With Dna Length = 268 Back     alignment and structure
>pdb|1EE8|A Chain A, Crystal Structure Of Mutm (Fpg) Protein From Thermus Thermophilus Hb8 Length = 266 Back     alignment and structure
>pdb|1L1T|A Chain A, Mutm (Fpg) Bound To Abasic-Site Containing Dna Length = 274 Back     alignment and structure
>pdb|1R2Y|A Chain A, Mutm (Fpg) Bound To 8-Oxoguanine (Oxog) Containing Dna Length = 274 Back     alignment and structure
>pdb|2F5N|A Chain A, Mutm Crosslinked To Undamaged Dna Sampling A:t Base Pair Ic1 Length = 274 Back     alignment and structure
>pdb|2F5Q|A Chain A, Catalytically Inactive (E3q) Mutm Crosslinked To Oxog:c Containing Dna Cc2 Length = 274 Back     alignment and structure
>pdb|3GPU|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog) Lesion In Ec4- Loop Deletion Complex Length = 256 Back     alignment and structure
>pdb|3GPP|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog) Lesion In Ec3- T224p Complex Length = 273 Back     alignment and structure
>pdb|3GPX|A Chain A, Sequence-Matched Mutm Interrogation Complex 4 (Ic4) Length = 257 Back     alignment and structure
>pdb|3SAR|A Chain A, Mutm Slanted Complex 1 Length = 273 Back     alignment and structure
>pdb|3GO8|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog) Lesion In Ec3- Loop Deletion Complex Length = 257 Back     alignment and structure
>pdb|3GP1|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog) Lesion In Ec3- V222p Complex Length = 273 Back     alignment and structure
>pdb|3GPY|A Chain A, Sequence-Matched Mutm Lesion Recognition Complex 3 (Lrc3) Length = 273 Back     alignment and structure
>pdb|3U6C|A Chain A, Mutm Set 1 Apgo Length = 273 Back     alignment and structure
>pdb|3JR4|A Chain A, Mutm Interrogating An Extrahelical G Length = 273 Back     alignment and structure
>pdb|4G4N|A Chain A, Mutm Containing M77a Mutation Bound To Undamaged Dna Length = 273 Back     alignment and structure
>pdb|1TDZ|A Chain A, Crystal Structure Complex Between The Lactococcus Lactis Fpg (Mutm) And A Fapy-Dg Containing Dna Length = 272 Back     alignment and structure
>pdb|4G4O|A Chain A, Mutm Containing M77a Mutation Bound To Oxog-containing Dna Length = 273 Back     alignment and structure
>pdb|3SAS|A Chain A, Mutm Slanted Complex 4 With R112a Mutation Length = 273 Back     alignment and structure
>pdb|4G4Q|A Chain A, Mutm Containing F114a Mutation Bound To Undamaged Dna Length = 273 Back     alignment and structure
>pdb|1PJI|A Chain A, Crystal Structure Of Wild Type Lactococcus Lactis Fpg Complexed To A 1,3 Propanediol Containing Dna Length = 271 Back     alignment and structure
>pdb|4G4R|A Chain A, Mutm Containing F114a Mutation Bound To Oxog-containing Dna Length = 273 Back     alignment and structure
>pdb|1NNJ|A Chain A, Crystal Structure Complex Between The Lactococcus Lactis Fpg And An Abasic Site Containing Dna Length = 271 Back     alignment and structure
>pdb|1KFV|A Chain A, Crystal Structure Of Lactococcus Lactis Formamido-Pyrimidine Dna Glycosylase (Alias Fpg Or Mutm) Non Covalently Bound To An Ap Site Containing Dna. Length = 271 Back     alignment and structure
>pdb|3A45|A Chain A, Crystal Structure Of Mvnei1_2 Length = 289 Back     alignment and structure
>pdb|3A42|A Chain A, Crystal Structure Of Mvnei1 Length = 295 Back     alignment and structure
>pdb|3VK7|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna Containing 5- Hydroxyuracil Length = 295 Back     alignment and structure
>pdb|1TDH|A Chain A, Crystal Structure Of Human Endonuclease Viii-Like 1 (Neil1) Length = 364 Back     alignment and structure
>pdb|3W0F|A Chain A, Crystal Structure Of Mouse Endonuclease Viii-like 3 (mneil3) Length = 287 Back     alignment and structure
>pdb|2OQ4|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease- Viii (Nei) From E. Coli (E2q) In Complex With Ap-Site Containing Dna Substrate Length = 262 Back     alignment and structure
>pdb|1Q3C|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease-Viii (Nei) From E. Coli: The E2a Mutant At 2.3 Resolution Length = 262 Back     alignment and structure
>pdb|1K3W|A Chain A, Crystal Structure Of A Trapped Reaction Intermediate Of The Dna Repair Enzyme Endonuclease Viii With Dna Length = 262 Back     alignment and structure
>pdb|1Q3B|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease-Viii (Nei) From E. Coli: The R252a Mutant At 2.05 Resolution. Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
3twl_A310 Formamidopyrimidine-DNA glycosylase 1; helix two t 1e-96
3vk8_A295 Probable formamidopyrimidine-DNA glycosylase; DNA 3e-68
3u6p_A273 Formamidopyrimidine-DNA glycosylase; DNA glycosyla 4e-53
2xzf_A271 Formamidopyrimidine-DNA glycosylase; hydrolase-DNA 3e-50
1ee8_A266 MUTM (FPG) protein; beta sandwich, zinc finger, he 1e-48
1k82_A268 Formamidopyrimidine-DNA glycosylase; protein-DNA c 4e-47
1k3x_A262 Endonuclease VIII; hydrolase/DNA, hydrolase-DNA co 3e-43
1tdh_A364 NEI endonuclease VIII-like 1; helix two turns heli 5e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A Length = 310 Back     alignment and structure
 Score =  285 bits (732), Expect = 1e-96
 Identities = 192/263 (73%), Positives = 213/263 (80%), Gaps = 22/263 (8%)

Query: 1   MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
           MPELPEVEAARRAIEE+C+GKKI + IIADDNKVI G+S SDF+ S+LGK I+SA RKGK
Sbjct: 1   MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGK 60

Query: 61  NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
           NLWL LDSPPFPSFQFGM GAIYIKGVAVT+YKRSAVKD++EWPSKYSKFFVELDDGLEL
Sbjct: 61  NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL 120

Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
           SFTDKRRFAKVRLL +PTSV PISELGPDALLEPMTVDEF +SL+KKKITIK LLLDQ Y
Sbjct: 121 SFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGY 180

Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV-REALGV---------SL 230
           ISGIGNW+ADEVLYQA+IHPLQTA SLSKE C  L   IKEV  +A+ V         + 
Sbjct: 181 ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDADSSQFPSNW 240

Query: 231 QFYKCYFAKPYVHKKHRENKICR 253
            F+            +RE K  +
Sbjct: 241 IFH------------NREKKPGK 251
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A* Length = 295 Back     alignment and structure
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ... Length = 273 Back     alignment and structure
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A* Length = 271 Back     alignment and structure
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 266 Back     alignment and structure
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 268 Back     alignment and structure
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A* Length = 262 Back     alignment and structure
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
3twl_A310 Formamidopyrimidine-DNA glycosylase 1; helix two t 100.0
3u6p_A273 Formamidopyrimidine-DNA glycosylase; DNA glycosyla 100.0
1k82_A268 Formamidopyrimidine-DNA glycosylase; protein-DNA c 100.0
2xzf_A271 Formamidopyrimidine-DNA glycosylase; hydrolase-DNA 100.0
1ee8_A266 MUTM (FPG) protein; beta sandwich, zinc finger, he 100.0
1k3x_A262 Endonuclease VIII; hydrolase/DNA, hydrolase-DNA co 100.0
3vk8_A295 Probable formamidopyrimidine-DNA glycosylase; DNA 100.0
1tdh_A364 NEI endonuclease VIII-like 1; helix two turns heli 100.0
3w0f_A287 Endonuclease 8-like 3; helix two turns helix, zinc 100.0
3r8n_M114 30S ribosomal protein S13; protein biosynthesis, R 97.25
2vqe_M126 30S ribosomal protein S13, 30S ribosomal protein S 96.98
3doa_A288 Fibrinogen binding protein; structural genomics, M 96.77
3iz6_M152 40S ribosomal protein S18 (S13P); eukaryotic ribos 96.77
2xzm_M155 RPS18E; ribosome, translation; 3.93A {Tetrahymena 96.74
3j20_O148 30S ribosomal protein S13P; archaea, archaeal, KIN 96.64
3u5c_S146 40S ribosomal protein S18-A, 40S ribosomal protein 96.57
3bbn_M145 Ribosomal protein S13; small ribosomal subunit, sp 94.08
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 89.21
1qyr_A252 KSGA, high level kasugamycin resistance protein, S 86.88
3tqs_A255 Ribosomal RNA small subunit methyltransferase A; p 82.2
3uzu_A279 Ribosomal RNA small subunit methyltransferase A; s 81.35
3fut_A271 Dimethyladenosine transferase; methyltransferase, 80.8
2riq_A160 Poly [ADP-ribose] polymerase 1; Zn-binding domain, 80.51
3gru_A295 Dimethyladenosine transferase; rossman fold, ribos 80.36
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A Back     alignment and structure
Probab=100.00  E-value=5.5e-77  Score=555.52  Aligned_cols=269  Identities=71%  Similarity=1.077  Sum_probs=229.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceE
Q 022922            1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG   80 (290)
Q Consensus         1 MPELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG   80 (290)
                      ||||||||++++.|++.+.|++|++|++...+++++++++++|.+.|.|++|++|.||||||+|.|+++.+|++||||||
T Consensus         1 MPELPEVetvrr~L~~~l~G~~I~~v~v~~~~~~~~~~~~~~f~~~L~G~~I~~v~RrGKyL~~~l~~~~~L~~HLgMsG   80 (310)
T 3twl_A            1 MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGKNLWLELDSPPFPSFQFGMAG   80 (310)
T ss_dssp             -CCHHHHHHHHHHHHHHSTTCBEEEEEECCCTTTBCSSCHHHHHHHHTTCBEEEEEEETTEEEEEESSSCEEEEECTTTC
T ss_pred             CCcHHHHHHHHHHHHHHcCCCEEEEEEEcCCcceeccCChHHHHHHcCCCEEEEEEeeeeEEEEEeCCCCEEEEEcCCce
Confidence            99999999999999999999999999998656666656788999999999999999999999999998779999999999


Q ss_pred             EEEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEecCCCCCCCcccCCCCCCCCCCCHHHH
Q 022922           81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEF  160 (290)
Q Consensus        81 ~l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~~~~~~l~~LGpDpL~~~f~~~~f  160 (290)
                      +|++.+.+.+.|......+.+.||++|.|++|.|+||..|.|+|+|+||+++++++.+..+.+++||||||+++|+.++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~kh~~v~l~l~~g~~L~f~D~RrfG~~~l~~~~~~~~~l~~LGPDpL~~~f~~~~~  160 (310)
T 3twl_A           81 AIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEF  160 (310)
T ss_dssp             EEEEC-----------------CCCTTEEEEEEETTSCEEEEECSSSCCEEEEESCGGGSTTGGGCCCBTTTSCCCHHHH
T ss_pred             EEEEecCCcccccccccccccCCCCceeEEEEEECCCCEEEEEecCcCcEEEEecchhhCchhhhcCCCCCCCcCCHHHH
Confidence            99997654444433333334467889999999999999999999999999999987666778999999999999999999


Q ss_pred             HHHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-HhccccccccccCc
Q 022922          161 TDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGVSLQFYKCYFAK  239 (290)
Q Consensus       161 ~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~~~~~~~~~~~~  239 (290)
                      .+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+++|+++|++||++ |+.+.+   .+.|+
T Consensus       161 ~~~l~~~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~vL~~ai~~gg~---~g~f~  237 (310)
T 3twl_A          161 AESLAKKKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDAD---SSQFP  237 (310)
T ss_dssp             HHHHHTCCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTTC---GGGSC
T ss_pred             HHHHhCCcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCC---CCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999 998432   24577


Q ss_pred             cceeecCCCCCCcc--ccccceeee---ccceeeecce
Q 022922          240 PYVHKKHRENKICR--LFKVRLKLM---LTAAAFLLNG  272 (290)
Q Consensus       240 ~~~~vy~R~g~~C~--~Cg~~i~~~---~~~~~~~~~~  272 (290)
                      ..+.||+|+|+||+  +||++|.++   ||+|+||-+=
T Consensus       238 ~~~~vygR~g~pC~~~~CG~~I~~~~~~gR~t~~CP~C  275 (310)
T 3twl_A          238 SNWIFHNREKKPGKAFVDGKKIDFITAGGRTTAYVPEL  275 (310)
T ss_dssp             TTCGGGGTTSCTTSCEETTEECEECCE------ECTTT
T ss_pred             ccEEEeCcCCCCCCCCCCCCeEEEEEECCcccEECCCC
Confidence            78899999999999  999998854   9999999753
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ... Back     alignment and structure
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A* Back     alignment and structure
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A* Back     alignment and structure
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A* Back     alignment and structure
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus} Back     alignment and structure
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... Back     alignment and structure
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} Back     alignment and structure
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M Back     alignment and structure
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m Back     alignment and structure
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Back     alignment and structure
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 Back     alignment and structure
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Back     alignment and structure
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Back     alignment and structure
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A Back     alignment and structure
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 290
d1tdha2130 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL 2e-21
d1r2za2133 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg) 4e-20
d1k82a2128 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) 1e-19
d1tdha1115 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NE 3e-18
d1k3xa189 a.156.1.2 (A:125-213) Endonuclease VIII {Escherich 5e-18
d1tdza188 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg 1e-17
d1ee8a189 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg 3e-17
d1k82a188 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg 3e-16
d1r2za194 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg 1e-15
d1ee8a2121 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) 3e-15
d1tdza2130 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg) 4e-15
d2hkja178 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit m 3e-12
d1k3xa2124 b.113.1.1 (A:1-124) Endonuclease VIII {Escherichia 5e-11
>d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure

class: All beta proteins
fold: N-terminal domain of MutM-like DNA repair proteins
superfamily: N-terminal domain of MutM-like DNA repair proteins
family: N-terminal domain of MutM-like DNA repair proteins
domain: Endonuclease VIII-like 1 (NEIL1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 2e-21
 Identities = 30/147 (20%), Positives = 44/147 (29%), Gaps = 32/147 (21%)

Query: 2   PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKN 61
           PE PE+  A + + E C        +          V              +SA  +GK 
Sbjct: 1   PEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFE------SSAYRISASARGKE 54

Query: 62  LWLRLDSPPFPS---------FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFV 112
           L L L   P            F+FGM+G+  +                 E   +++    
Sbjct: 55  LRLILSPLPGAQPQQEPLALVFRFGMSGSFQLV--------------PREELPRHAHLRF 100

Query: 113 ELDDG---LELSFTDKRRFAKVRLLND 136
                   L L F D RRF +  L   
Sbjct: 101 YTAPPGPRLALCFVDIRRFGRWDLGGK 127
>d1r2za2 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Length = 133 Back     information, alignment and structure
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Length = 128 Back     information, alignment and structure
>d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Length = 89 Back     information, alignment and structure
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Length = 88 Back     information, alignment and structure
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Length = 89 Back     information, alignment and structure
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Length = 88 Back     information, alignment and structure
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Length = 94 Back     information, alignment and structure
>d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Length = 121 Back     information, alignment and structure
>d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Length = 130 Back     information, alignment and structure
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 78 Back     information, alignment and structure
>d1k3xa2 b.113.1.1 (A:1-124) Endonuclease VIII {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
d1k82a2128 DNA repair protein MutM (Fpg) {Escherichia coli [T 100.0
d1r2za2133 DNA repair protein MutM (Fpg) {Bacillus stearother 100.0
d1ee8a2121 DNA repair protein MutM (Fpg) {Thermus thermophilu 99.98
d1tdza2130 DNA repair protein MutM (Fpg) {Lactococcus lactis 99.97
d1ee8a189 DNA repair protein MutM (Fpg) {Thermus thermophilu 99.97
d1k82a188 DNA repair protein MutM (Fpg) {Escherichia coli [T 99.97
d1tdza188 DNA repair protein MutM (Fpg) {Lactococcus lactis 99.97
d1r2za194 DNA repair protein MutM (Fpg) {Bacillus stearother 99.97
d1k3xa189 Endonuclease VIII {Escherichia coli [TaxId: 562]} 99.96
d1tdha2130 Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapi 99.94
d1k3xa2124 Endonuclease VIII {Escherichia coli [TaxId: 562]} 99.94
d1tdha1115 Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapi 99.85
d2hkja178 Topoisomerase VI-B subunit middle domain {Archaeon 99.85
d1tdza347 DNA repair protein MutM (Fpg) {Lactococcus lactis 99.01
d1r2za346 DNA repair protein MutM (Fpg) {Bacillus stearother 99.0
d1k82a344 DNA repair protein MutM (Fpg) {Escherichia coli [T 98.97
d1ee8a356 DNA repair protein MutM (Fpg) {Thermus thermophilu 98.84
d1k3xa340 Endonuclease VIII {Escherichia coli [TaxId: 562]} 98.79
d2gy9m1114 Ribosomal protein S13 {Escherichia coli [TaxId: 56 96.59
d2uubm1125 Ribosomal protein S13 {Thermus thermophilus [TaxId 96.35
d1qyra_252 High level kasugamycin resistance protein KsgA {Es 90.48
d2i0za2169 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 84.67
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: N-terminal domain of MutM-like DNA repair proteins
superfamily: N-terminal domain of MutM-like DNA repair proteins
family: N-terminal domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-35  Score=239.35  Aligned_cols=128  Identities=28%  Similarity=0.440  Sum_probs=111.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceEE
Q 022922            2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA   81 (290)
Q Consensus         2 PELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG~   81 (290)
                      |||||||++++.|++.+.|++|.+|++. ++++..+. + ++.+.|.|++|++|.|+||||+++|+++ ++++||||||+
T Consensus         1 PELPEVEtv~~~L~~~~~g~~I~~v~~~-~~~~~~~~-~-~~~~~l~g~~i~~v~RrGK~l~~~l~~~-~l~iHLgMtG~   76 (128)
T d1k82a2           1 PELPEVETSRRGIEPHLVGATILHAVVR-NGRLRWPV-S-EEIYRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGS   76 (128)
T ss_dssp             CCHHHHHHHHHHHHHHHBTCEEEEEEES-CCBSSSBC-C-HHHHHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCE
T ss_pred             CCCccHHHHHHHHHHHhCCCEEEEEEEC-Cccceeec-C-HHHHHhhCCceehhhheeeEEEEEcCCC-cEEEEeccceE
Confidence            9999999999999999999999999997 55555433 3 3446799999999999999999999986 89999999999


Q ss_pred             EEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEecCCCCCCCcccC
Q 022922           82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISEL  146 (290)
Q Consensus        82 l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~~~~~~l~~L  146 (290)
                      |.+.+.             +.+|++|+|++|.|+||..|+|+|+|+||+++++++.+.++.+++|
T Consensus        77 l~~~~~-------------~~~~~kh~~~~~~~~~g~~L~f~D~RrFG~i~~~~~~~~~~~l~~L  128 (128)
T d1k82a2          77 LRILPE-------------ELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHL  128 (128)
T ss_dssp             EEEESS-------------SCCCCTTCCEEEEETTSCEEEEECSSCCCEEEEESCSSSSTTTTTC
T ss_pred             EEEEec-------------cCCCCCceEEEEEECCCCEEEEECCCCceEEEEcCChhhChhccCC
Confidence            998753             3456799999999999999999999999999999877777666654
>d1r2za2 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3xa2 b.113.1.1 (A:1-124) Endonuclease VIII {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure