Citrus Sinensis ID: 022923

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MAELLSKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR
Secondary Structure (PSIPRED)
cHHHHcccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEccHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccEEEEEEccccEEEEEEEEcccHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccccccccccEEEcccccccccccccHHcccccccccccccccccEEEEcccccccccccccEEEEEEEEEccccccHHHHcccccccEEcccHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHcccccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccEccccc
Coil and Loop (DISEMBL)
MAELLSKANlfsyfnqdqhnkssisvfpkscagscsmKLRSQAlrlsspltsdfhghgvvfqenkaipkrgssskfsisAQTGLRIGKAQRWwekglqpnmrEVASAQDLVESLWHAGDKLVvvdffspgcggckalhpkicqlaemnpdvqFLQVNYEEHKSMCYSLnvhvlpffrfyrgahgrvcsfsctnATIKKFKDALAkhtpdrcglgptkglEEKELLALAANkdlsfnytpkphpmpapaveevglaevppphsipnlplplpstlkstqEIEDKTLVSAGR
Flexible Loop (DISEMBL)
MAELLSKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQenkaipkrgssskfsisaqtglrIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDalakhtpdrcglgptKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLplpstlkstqeiedktlvsagr
Low Complexity Region (SEG)
MAELLSKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTkgleekellalaankdlSFNYTPKPHPMPAPAVEEVGLAEVppphsipnlplplpstlksTQEIEDKTLVSAGR
Disordered region (IsUnstruct)
**********FSYF***************************************FHGHGVVF*******************QTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGP*******ELLALAA*************************************************************
Disordered Region (DISOPRED)
***************************************************************************************************NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH************************************************************************************
Disordered Region (DISEMBL)
MAELLSKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAI**********ISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR
Disordered Region (DISPRO)
*****S***L*S*********SSISVFPKSCAGSCSMKLRSQALRLS*PLTSDFHGHG*V**EN*AIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPK**************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAELLSKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
O64654	275	Thioredoxin-like 1-1, chl	yes	no	0.924	0.974	0.636	7e-97
Q10M18	279	Thioredoxin-like 1-2, chl	yes	no	0.686	0.713	0.697	3e-81
Q6Z4N3	279	Thioredoxin-like 1-1, chl	yes	no	0.710	0.738	0.696	8e-79
O22779	273	Thioredoxin-like 1-3, chl	no	no	0.713	0.758	0.612	1e-71
Q9XFI1	245	Thioredoxin-like 1-2, chl	no	no	0.534	0.632	0.638	8e-57
Q5TKD8	216	Thioredoxin-like 2, chlor	no	no	0.444	0.597	0.496	4e-36
Q8LEK4	221	Thioredoxin-like 2-1, chl	no	no	0.4	0.524	0.491	6e-33
Q8LCT3	236	Thioredoxin-like 2-2, chl	no	no	0.368	0.453	0.5	4e-28
Q5XHX6	550	Thioredoxin domain-contai	yes	no	0.375	0.198	0.321	6e-10
O96952	106	Thioredoxin OS=Geodia cyd	N/A	no	0.262	0.716	0.355	9e-10

>sp|O64654|TRL11_ARATH Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1

 Score =  353 bits (907), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 189/297 (63%), Positives = 220/297 (74%), Gaps = 29/297 (9%)

Query: 1   MAELLSKANLFSYFNQDQHNKSSISVFPKSCAG-------SCSMKLRSQALRLSSPLTSD 53
           M E++SK +LF     + H     S  P S  G       SC +KL+SQ      PL S 
Sbjct: 1   MTEVISKTSLFLGACGNHHRVDDFSFSPVSFGGFGLKKSFSC-LKLKSQ-----KPLRSV 54

Query: 54  FHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVES 113
           F+G  +VF +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+LV+S
Sbjct: 55  FYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDS 111

Query: 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVL 173
           L +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL VHVL
Sbjct: 112 LTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVL 171

Query: 174 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDL 233
           PFFRFYRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPTKGLEEKEL+ALAANK+L
Sbjct: 172 PFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKEL 231

Query: 234 SFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR 290
           +F YTPKP P     VE+    E   P S P+LP+PLPS   +    ++KTLVSAGR
Sbjct: 232 NFTYTPKPVP-----VEK----EAATPDSNPSLPVPLPSMSSN----DEKTLVSAGR 275

Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10M18|TRL12_ORYSJ Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0326500 PE=2 SV=1

 Score =  301 bits (772), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 169/215 (78%), Gaps = 16/215 (7%)

Query: 81  QTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK 140
           Q  L   KA +WWEKGLQPNMREV SAQDLV+SL +AGD LV+VDFFSPGCGGC+ALHPK
Sbjct: 76  QMNLAFAKATKWWEKGLQPNMREVESAQDLVDSLTNAGDNLVIVDFFSPGCGGCRALHPK 135

Query: 141 ICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK 200
           ICQ+AE NPDV FLQVNYEEHKSMCYSL+VHVLPFFRFYRGA GR+CSFSCTNATIKKF+
Sbjct: 136 ICQIAEQNPDVLFLQVNYEEHKSMCYSLHVHVLPFFRFYRGAQGRLCSFSCTNATIKKFR 195

Query: 201 DALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMP---APAVEEV--GLA 255
           DALAKH PDRC LGPT+GLEE ELLALAANKDL FNYT KP  +P   A A +E+  G  
Sbjct: 196 DALAKHKPDRCSLGPTRGLEESELLALAANKDLQFNYTKKPELVPSGDAAAAQELDRGST 255

Query: 256 EVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR 290
           ++ PP      PL         Q  E+++LVS+GR
Sbjct: 256 KLSPPAK----PL-------VKQGSEERSLVSSGR 279

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z4N3|TRL11_ORYSJ Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0684100 PE=2 SV=1

 Score =  293 bits (751), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 147/211 (69%), Positives = 165/211 (78%), Gaps = 5/211 (2%)

Query: 80  AQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHP 139
            Q  L IGKA RWWEK LQPNMRE+ SAQDL +SL +AGDKLVVVDFFSPGCGGC+ALHP
Sbjct: 74  GQMNLTIGKAMRWWEKCLQPNMREIESAQDLADSLLNAGDKLVVVDFFSPGCGGCRALHP 133

Query: 140 KICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF 199
           KI QLAE NP+V FLQVNYE+HKSMCYSL+VHVLPFFRFYRGA GRV SFSCTNATIKKF
Sbjct: 134 KIAQLAEKNPEVLFLQVNYEKHKSMCYSLHVHVLPFFRFYRGAQGRVSSFSCTNATIKKF 193

Query: 200 KDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPP 259
           KDALAKH PDRCGLGP KGLEE EL+ALA N+DL+F YTP    +P   + +  L E   
Sbjct: 194 KDALAKHGPDRCGLGPAKGLEESELMALAINRDLNFTYTPNQDLVP---IADALLKEAAA 250

Query: 260 PHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR 290
           P   P LPLP  +T    Q  E+ +L+S+GR
Sbjct: 251 PGG-PWLPLPATATQLFIQGSEN-SLLSSGR 279

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22779|TRL13_ARATH Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/214 (61%), Positives = 159/214 (74%), Gaps = 7/214 (3%)

Query: 26  VFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLR 85
           + PKS +  C +  R  +    SP T     +G +    K IP         +  QT L 
Sbjct: 27  ISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKKKIPA-------FVRCQTSLG 79

Query: 86  IGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA 145
           IG+ Q+WWEK L+PNM+ V S QDLV SL +AGDKLVVVDFFSP CGGCKALHPKIC++A
Sbjct: 80  IGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIA 139

Query: 146 EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 205
           E NP+V+FLQVNYEEH+S+C SLN+HVLPFFRFYRG+ GRVCSFSCTNATI+KFK+AL K
Sbjct: 140 EKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEK 199

Query: 206 HTPDRCGLGPTKGLEEKELLALAANKDLSFNYTP 239
           H  ++C +G TKGLEEKEL+A+AANKDLSF+Y P
Sbjct: 200 HGREQCSIGETKGLEEKELVAMAANKDLSFDYKP 233

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFI1|TRL12_ARATH Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1

 Score =  220 bits (561), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 99/155 (63%), Positives = 121/155 (78%)

Query: 82  TGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI 141
           + + + +  RWWEK    NM E+ SA  LV+SL +AGD+LVV+DF+SPGCGGCK+LHPKI
Sbjct: 68  SSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKI 127

Query: 142 CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKD 201
           CQLAE NP+V FL+VN EE ++MC+ LNVHVLPFF+FYRGA G+VCSFSCT ATI KFK 
Sbjct: 128 CQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKK 187

Query: 202 ALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFN 236
           AL KH  +RC LG  KGL+EKEL ALA+  +L  N
Sbjct: 188 ALDKHGSERCSLGDAKGLDEKELAALASVGELKMN 222

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5TKD8|TRL2_ORYSJ Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1

 Score =  152 bits (383), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 93/129 (72%)

Query: 91  RWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD 150
           +WWEK   PNM ++ S Q+ +++L  AGD+LV+V+F+   CG C+AL P++C+ A  NPD
Sbjct: 71  KWWEKNAGPNMIDIHSTQEFLDALRDAGDRLVIVEFYGTWCGSCRALFPRLCRTAVENPD 130

Query: 151 VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 210
           + FL+VN++E+K MC  LNV VLP+F FYRGA G++ +FSC+ A  +K KDA+A H   R
Sbjct: 131 ILFLKVNFDENKPMCKRLNVKVLPYFHFYRGADGQLEAFSCSLAKFQKLKDAIAVHNTAR 190

Query: 211 CGLGPTKGL 219
           C +GP  G+
Sbjct: 191 CSIGPPVGV 199

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LEK4|TRL21_ARATH Thioredoxin-like 2-1, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 88/116 (75%)

Query: 91  RWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD 150
           +WWE+   PNM ++ SA+  + +L  AGD+LV+VDF+   CG C+A+ PK+C+ A+ +P+
Sbjct: 85  KWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPN 144

Query: 151 VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           + FL+VN++E+KS+C SLNV VLP+F FYRGA G+V SFSC+ A  +K ++A+ +H
Sbjct: 145 ILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERH 200

Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCT3|TRL22_ARATH Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 80/108 (74%), Gaps = 1/108 (0%)

Query: 91  RWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD 150
           +WWE+   PNM ++ S ++ + +L  AG++LV+V+F+   C  C+AL PK+C+ A  +PD
Sbjct: 96  KWWERN-APNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPD 154

Query: 151 VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 198
           + FL+VN++E+K MC SLNV VLPFF FYRGA G++ SFSC+ A +KK
Sbjct: 155 IVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVKK 202

Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XHX6|TXND2_RAT Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 6/115 (5%)

Query: 91  RWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD 150
              E+G+   +R +   ++  E L  AG+KLV VDF +P CG C+ + P    L+  + D
Sbjct: 440 ETLEEGM---VRVIKDKEEFEEVLKDAGEKLVAVDFSAPWCGPCRKMRPHFHSLSLKHED 496

Query: 151 VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 205
           V FL+V+ E+ + +     V  LP F+FY+    +V  FS   A ++K + ++A+
Sbjct: 497 VIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEE-KVGEFS--GALVEKLEKSIAE 548

Probably plays a regulatory role in sperm development. May participate in regulation of fibrous sheath (FS) assembly by supporting the formation of disulfide bonds during sperm tail morphogenesis. May also be required to rectify incorrect disulfide pairing and generate suitable pairs between the FS constituents. Can reduce disulfide bonds in vitro in the presence of NADP and thioredoxin reductase.

Rattus norvegicus (taxid: 10116)

>sp|O96952|THIO_GEOCY Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%)

Query: 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 168
           D  ++L  AGDKLVV+DF +  CG C+ + PK  ++A+  PDV F +V+ +E+     + 
Sbjct: 10  DFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAE 69

Query: 169 NVHVLPFFRFYRGAHG 184
            +  +P F+FY+    
Sbjct: 70  KIQAMPTFKFYKSGKA 85

Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.

Geodia cydonium (taxid: 6047)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
224144761	295	predicted protein [Populus trichocarpa]	0.996	0.979	0.689	1e-107
255568982	296	Thioredoxin, putative [Ricinus communis]	0.975	0.956	0.650	1e-102
224125912	304	predicted protein [Populus trichocarpa]	0.989	0.944	0.644	1e-101
380710175	287	chloroplast Trx [Gossypium hirsutum]	0.955	0.965	0.63	4e-97
356571680	297	PREDICTED: thioredoxin-like 1-1, chlorop	0.982	0.959	0.629	6e-97
357508625	286	Thioredoxin-like protein [Medicago trunc	0.882	0.895	0.665	8e-96
15223262	275	thioredoxin-like 1-1 [Arabidopsis thalia	0.924	0.974	0.636	4e-95
356560979	299	PREDICTED: thioredoxin-like 1-1, chlorop	0.989	0.959	0.609	7e-95
312282269	274	unnamed protein product [Thellungiella h	0.944	1.0	0.644	7e-94
255639909	248	unknown [Glycine max]	0.851	0.995	0.691	8e-94

>gi|224144761|ref|XP_002325404.1| predicted protein [Populus trichocarpa] gi|222862279|gb|EEE99785.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/296 (68%), Positives = 230/296 (77%), Gaps = 7/296 (2%)

Query: 1   MAELLSKANLFSYFNQDQHNKSSISVFPKSCA-GSCSMKLRSQALRLSSPLTS---DFHG 56
           M E+LSK NLFS  N      ++ISVF KSC       +++ Q LR     +S   DF+G
Sbjct: 1   MTEVLSKTNLFSSGNYQTRQHNTISVFTKSCRLKGFPSRVKPQGLRSQISRSSSCSDFYG 60

Query: 57  HGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWH 116
             VV   N++ P+RG   + S+ A TGL++  A++WWEKGLQPNMREV SAQDLV+SL +
Sbjct: 61  KRVVVHGNQSKPRRGYLPQASVVALTGLKLKYAKKWWEKGLQPNMREVTSAQDLVDSLMN 120

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
           AGD+LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF
Sbjct: 121 AGDQLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 180

Query: 177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFN 236
           RFYRGAHGR+CSFSCTNATIKKFKDALAKHTP+RC LGPTKGLEEKEL+ALAANKDLSF 
Sbjct: 181 RFYRGAHGRLCSFSCTNATIKKFKDALAKHTPERCSLGPTKGLEEKELVALAANKDLSFT 240

Query: 237 YTPKP-HPMPAPAVEEVGLAEVPPPHSIPNLPLPLPST-LKSTQEIEDKTLVSAGR 290
           YTPKP  P P PA EEV      P HS   LPLPLP T  KS Q+ E+KTLVS+GR
Sbjct: 241 YTPKPVQPAPVPAEEEVA-PTAGPSHSDRGLPLPLPITSSKSAQDSEEKTLVSSGR 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568982|ref|XP_002525461.1| Thioredoxin, putative [Ricinus communis] gi|223535274|gb|EEF36951.1| Thioredoxin, putative [Ricinus communis]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/303 (65%), Positives = 228/303 (75%), Gaps = 20/303 (6%)

Query: 1   MAELLSKANLF------SYFNQDQHNKSSISVFPKSCA-GSCSMKLRSQAL---RLSSPL 50
           MA++LSK NL        Y NQ    K    V  +SC+    S K   QA    ++S  L
Sbjct: 1   MADVLSKTNLVPSSCCNGYKNQ---KKDGAFVLKRSCSLKVSSRKFNPQAFGSQKIS--L 55

Query: 51  TSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDL 110
            SDF+G  V+ QE +   KRG+  +FSI AQTGLR+  A +WWEKGLQPNM+E+ SAQDL
Sbjct: 56  ISDFYGKRVIVQEKQL--KRGNFHQFSIKAQTGLRLKNAPKWWEKGLQPNMKEITSAQDL 113

Query: 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNV 170
           V+SL +AGDKLV+VDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSLNV
Sbjct: 114 VDSLMNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLNV 173

Query: 171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN 230
           HVLPFFRFYRGA GRVCSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEKEL+ALA+N
Sbjct: 174 HVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEKELIALASN 233

Query: 231 KDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLP---STLKSTQEIEDKTLVS 287
           KDL+F  TPKP    APA EE+  A + P H    LPLP+P   ++L S Q++ +KTLV+
Sbjct: 234 KDLNFTCTPKPVQPTAPAQEEIIPAALTPAHVNQTLPLPIPLSTTSLMSAQDLGEKTLVT 293

Query: 288 AGR 290
           +GR
Sbjct: 294 SGR 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125912|ref|XP_002319706.1| predicted protein [Populus trichocarpa] gi|118488527|gb|ABK96076.1| unknown [Populus trichocarpa] gi|222858082|gb|EEE95629.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/307 (64%), Positives = 226/307 (73%), Gaps = 20/307 (6%)

Query: 1   MAELLSKANLF------SYFNQDQHNKSSISVFPKSCA-GSCSMKLRSQALR---LSSPL 50
           MA++LSK +LF      +Y NQ Q+   SISVF KSC      +K + QALR     S  
Sbjct: 1   MADVLSKTSLFVSSNVGNYQNQQQN---SISVFAKSCKLKGFPLKAKPQALRSQITRSSS 57

Query: 51  TSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDL 110
            SDF+G  V    N++ P+RG   + S+ AQTGLR+  AQ+WWEKGLQPN+REV SAQDL
Sbjct: 58  CSDFYGKRVAVLGNQSKPRRGYLRQASVVAQTGLRLKYAQKWWEKGLQPNVREVTSAQDL 117

Query: 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNV 170
           V+SL ++GDKLVVVDFFSPGCGGCKALHPK+CQLAEMNPDVQFLQVNYEEHKSMCYSLNV
Sbjct: 118 VDSLMNSGDKLVVVDFFSPGCGGCKALHPKLCQLAEMNPDVQFLQVNYEEHKSMCYSLNV 177

Query: 171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN 230
           HVLPFFR YRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEKEL ALAAN
Sbjct: 178 HVLPFFRLYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEKELAALAAN 237

Query: 231 KDLSFNYTPKP-HPMPAPAVEEVGLAEVPPPHS------IPNLPLPLPSTLKSTQEIEDK 283
           KDLSF YTPK   P P P  EE  +      HS      +P       ++LKS Q+ E+K
Sbjct: 238 KDLSFTYTPKKVQPAPVPVAEEEVVPATAASHSDGGLPPLPLTLPLPITSLKSAQDSEEK 297

Query: 284 TLVSAGR 290
           TL  +GR
Sbjct: 298 TLAISGR 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380710175|gb|AFD98846.1| chloroplast Trx [Gossypium hirsutum]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 189/300 (63%), Positives = 215/300 (71%), Gaps = 23/300 (7%)

Query: 1   MAELLSKANLFSYFNQDQHNK---------SSISVFPKSCAGSCSMKLRSQALRLSSPLT 51
           MAE+L K NLF+  N  Q              IS F     G  S+K++SQALR      
Sbjct: 1   MAEVLGKGNLFTTCNYSQTKNLEGGTCLVPKKISGFSLERNGFSSLKVKSQALR------ 54

Query: 52  SDFHGHGVVFQENKAIPKRG-SSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDL 110
           SDF+G  +VF E K++ +R           Q+GL IG+ Q+WWEKGLQPNM+EVASAQDL
Sbjct: 55  SDFNGQRMVFLEKKSMNRRRFCQVPIKAQMQSGL-IGRIQKWWEKGLQPNMKEVASAQDL 113

Query: 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNV 170
           V+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSLNV
Sbjct: 114 VDSLLNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLNV 173

Query: 171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN 230
           HVLPFFRFYRGA GRVCSFSCTNATIKKF+DALAKHTPDRC L  TKGLEEKELLAL+AN
Sbjct: 174 HVLPFFRFYRGAQGRVCSFSCTNATIKKFRDALAKHTPDRCSLSTTKGLEEKELLALSAN 233

Query: 231 KDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR 290
           KDLSFNYT      P P   E+ + +  P  S   LPL +P+T    ++ E+KTLV  GR
Sbjct: 234 KDLSFNYT------PIPTHGEILIWKQVPSDSTRKLPLSVPTTSAKQRDSEEKTLVGVGR 287

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571680|ref|XP_003554002.1| PREDICTED: thioredoxin-like 1-1, chloroplastic-like [Glycine max]

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 190/302 (62%), Positives = 224/302 (74%), Gaps = 17/302 (5%)

Query: 1   MAELLSKANLFS-----YFNQDQHNKSSISVFPKSCA-GS-----CSMKLRSQALRLSSP 49
           MAE+L+KA+L S     +    Q +   +S    +C+ GS      S+K++SQ LR  S 
Sbjct: 1   MAEVLTKASLVSSSSSSWHGVGQRHHRRVSTVSNTCSFGSGVGKFSSLKMKSQVLRSWSS 60

Query: 50  LTSDFHGHGVVFQENKAIPKRGSSS-KFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQ 108
            +S+F G  +VF  N+ +P R +S  + S  AQ   R+GK Q+WWEKGLQPNM+EV SAQ
Sbjct: 61  -SSEFQGIKLVFHVNRGLPNRVNSRLRASTGAQMSFRLGKVQKWWEKGLQPNMKEVTSAQ 119

Query: 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 168
           D V+SL  AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL
Sbjct: 120 DFVDSLLSAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSL 179

Query: 169 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALA 228
           NVHVLPFFRFYRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEKELLALA
Sbjct: 180 NVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEKELLALA 239

Query: 229 ANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSA 288
           ANKDLSF  +P+P   PA A EE+G    P P S     LP PS + +++  + +TL ++
Sbjct: 240 ANKDLSFTNSPEP-LQPAHADEELGTEPAPAPGSK---SLPSPSMILNSEVSKKRTLTTS 295

Query: 289 GR 290
           GR
Sbjct: 296 GR 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508625|ref|XP_003624601.1| Thioredoxin-like protein [Medicago truncatula] gi|124365591|gb|ABN09825.1| Thioredoxin domain 2; Thioredoxin fold [Medicago truncatula] gi|355499616|gb|AES80819.1| Thioredoxin-like protein [Medicago truncatula] gi|388494216|gb|AFK35174.1| unknown [Medicago truncatula]

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 179/269 (66%), Positives = 214/269 (79%), Gaps = 13/269 (4%)

Query: 1   MAELLSKANLFSYF--NQDQHNKSSISVFPKSCAGSC------SMKLRSQALRLSSPLTS 52
           MAE L K +L S +  N++Q  +  +S+ P++C+ +       S+KL+SQ  R SS  +S
Sbjct: 1   MAETLIKTSLVSSWHGNRNQQ-RQRVSMVPRTCSFNTGVKSFPSLKLKSQLHRSSSSFSS 59

Query: 53  DFHGHGVVFQENKAIPKRGSSSKFSISA--QTGLRIGKAQRWWEKGLQPNMREVASAQDL 110
           +FHG   +F+ N++ PKR  +S+FS+SA  +  LR+GK Q+WWEKG QPNMREV SAQDL
Sbjct: 60  EFHGKKAIFRVNRSTPKR-VNSQFSVSAAPKMTLRVGKVQKWWEKGHQPNMREVTSAQDL 118

Query: 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNV 170
           V+SL +AGDKLV+VDFFSPGCGGCKALHPKICQ AEMNPDV+FLQVNYEEHKSMCYSLNV
Sbjct: 119 VDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPDVEFLQVNYEEHKSMCYSLNV 178

Query: 171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN 230
           HVLPFFRFYRGA GRVCSFSCTNATIKKF+DALAKHTPDRC L PTKGLEEKEL+AL+ N
Sbjct: 179 HVLPFFRFYRGAQGRVCSFSCTNATIKKFRDALAKHTPDRCSLEPTKGLEEKELIALSEN 238

Query: 231 KDLSFNYTPKP-HPMPAPAVEEVGLAEVP 258
           +DL+F YTPKP  P+  PA EEV    VP
Sbjct: 239 RDLNFTYTPKPSQPVHTPANEEVATEAVP 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223262|ref|NP_172333.1| thioredoxin-like 1-1 [Arabidopsis thaliana] gi|51701910|sp|O64654.1|TRL11_ARATH RecName: Full=Thioredoxin-like 1-1, chloroplastic; AltName: Full=Atypical cysteine/histidine-rich thioredoxin 4; Short=AtACHT4; AltName: Full=Lilium-type thioredoxin 1-1; Flags: Precursor gi|4973256|gb|AAD35005.1|AF144387_1 thioredoxin-like 1 [Arabidopsis thaliana] gi|9802552|gb|AAF99754.1|AC003981_4 F22O13.5 [Arabidopsis thaliana] gi|14334494|gb|AAK59444.1| putative thioredoxin [Arabidopsis thaliana] gi|17104801|gb|AAL34289.1| putative thioredoxin [Arabidopsis thaliana] gi|332190186|gb|AEE28307.1| thioredoxin-like 1-1 [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 189/297 (63%), Positives = 220/297 (74%), Gaps = 29/297 (9%)

Query: 1   MAELLSKANLFSYFNQDQHNKSSISVFPKSCAG-------SCSMKLRSQALRLSSPLTSD 53
           M E++SK +LF     + H     S  P S  G       SC +KL+SQ      PL S 
Sbjct: 1   MTEVISKTSLFLGACGNHHRVDDFSFSPVSFGGFGLKKSFSC-LKLKSQ-----KPLRSV 54

Query: 54  FHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVES 113
           F+G  +VF +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+LV+S
Sbjct: 55  FYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDS 111

Query: 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVL 173
           L +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL VHVL
Sbjct: 112 LTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVL 171

Query: 174 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDL 233
           PFFRFYRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPTKGLEEKEL+ALAANK+L
Sbjct: 172 PFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKEL 231

Query: 234 SFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR 290
           +F YTPKP P     VE+    E   P S P+LP+PLPS   +    ++KTLVSAGR
Sbjct: 232 NFTYTPKPVP-----VEK----EAATPDSNPSLPVPLPSMSSN----DEKTLVSAGR 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560979|ref|XP_003548763.1| PREDICTED: thioredoxin-like 1-1, chloroplastic-like [Glycine max]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 184/302 (60%), Positives = 217/302 (71%), Gaps = 15/302 (4%)

Query: 1   MAELLSKANLFSY----FNQDQHNKSSISV-------FPKSCAGSCSMKLRSQALRLSSP 49
           MAE+L+KA+L S      +Q  H++   +V       F        S+K+ SQ LR  S 
Sbjct: 1   MAEVLTKASLVSSSWHGVSQRHHHRRVSTVLSNNTCSFRSGVGKFSSLKMNSQVLRSWSS 60

Query: 50  LTSDFHGHGVVFQENKAIPKRGSSS-KFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQ 108
            +S+F G  +VF  N+ +P R +S  + S   Q  LR+GK Q+WWEKGLQPNM+EV SAQ
Sbjct: 61  -SSEFQGKKLVFHVNRGLPNRVNSRLRASTGTQMNLRLGKVQKWWEKGLQPNMKEVTSAQ 119

Query: 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 168
           D V+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL
Sbjct: 120 DFVDSLLNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSL 179

Query: 169 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALA 228
           NVHVLPFFRFYRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPT GLEEKEL ALA
Sbjct: 180 NVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTIGLEEKELEALA 239

Query: 229 ANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSA 288
           ANKDLSF Y+PKP   P+   EE+       P ++ +  LP PS   +     ++TL ++
Sbjct: 240 ANKDLSFTYSPKP-LQPSHENEELATETASAP-ALGSGSLPSPSMTLNAVASNERTLTTS 297

Query: 289 GR 290
           GR
Sbjct: 298 GR 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282269|dbj|BAJ34000.1| unnamed protein product [Thellungiella halophila]

 Score =  349 bits (896), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 187/290 (64%), Positives = 219/290 (75%), Gaps = 16/290 (5%)

Query: 1   MAELLSKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVV 60
           MAE++S+ +LF +     H     SV P S AG   +K    +L+   PL S+FHG  ++
Sbjct: 1   MAEVISRTSLF-FGACGNHYVDDSSVSPVSFAG-FGLKKSFSSLK-QKPLRSEFHGKQIL 57

Query: 61  FQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDK 120
             + +    + S    SI+AQT LRIG +Q+WWEKGLQ NMRE++SAQ+LV+SL +AGDK
Sbjct: 58  VGDVQNESFKKSFRSSSITAQTTLRIGTSQKWWEKGLQENMREISSAQELVDSLTNAGDK 117

Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
           LVVVDFFSPGCGGCKALHPK+CQLAE NPDVQFLQVNYEEHKSMCYSL VHVLPFFRFYR
Sbjct: 118 LVVVDFFSPGCGGCKALHPKLCQLAEQNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYR 177

Query: 181 GAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPK 240
           GAHGRVCSFSCTNATIKKF+DALAKHTPDRC LGPTKGLEEKEL+ALAANK+L+F+YTPK
Sbjct: 178 GAHGRVCSFSCTNATIKKFRDALAKHTPDRCSLGPTKGLEEKELVALAANKELNFSYTPK 237

Query: 241 PHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR 290
             P     VEE    E   P S P+LP+P PS   S    ++KTLVSAGR
Sbjct: 238 IVP-----VEE----EAASPTSNPSLPVPHPSMSAS----DEKTLVSAGR 274

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639909|gb|ACU20247.1| unknown [Glycine max]

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 175/253 (69%), Positives = 200/253 (79%), Gaps = 6/253 (2%)

Query: 39  LRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSS-KFSISAQTGLRIGKAQRWWEKGL 97
           ++SQ LR  S  +S+F G  +VF  N+ +P R +S  + S  AQ   R+GK Q+WWEKGL
Sbjct: 1   MKSQVLRSWSS-SSEFQGIKLVFHVNRGLPNRVNSRLRASTGAQMSFRLGKVQKWWEKGL 59

Query: 98  QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN 157
           QPNM+EV SAQD V+SL  AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVN
Sbjct: 60  QPNMKEVTSAQDFVDSLLSAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVN 119

Query: 158 YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTK 217
           YEEHKSMCYSLNVHVLPFFRFYRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPTK
Sbjct: 120 YEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTK 179

Query: 218 GLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKST 277
           GLEEKELLALAANKDLSF  +P+P   PA A EE+G    P P S     LP PS + ++
Sbjct: 180 GLEEKELLALAANKDLSFTNSPEPL-QPAHADEELGTEPAPAPGSK---SLPSPSMILNS 235

Query: 278 QEIEDKTLVSAGR 290
           +  + +TL ++GR
Sbjct: 236 EVSKKRTLTTSGR 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2025625	275	ACHT4 "atypical CYS HIS rich t	0.841	0.887	0.612	4.5e-75
TAIR|locus:2051048	273	ACHT3 "atypical CYS HIS rich t	0.775	0.824	0.521	4e-58
TAIR|locus:2163168	245	ACHT5 "atypical CYS HIS rich t	0.662	0.783	0.520	8.5e-49
TAIR|locus:2120860	221	ACHT1 "atypical CYS HIS rich t	0.644	0.846	0.370	2.9e-32
TAIR|locus:2134443	236	ACHT2 "atypical CYS HIS rich t	0.531	0.652	0.414	7.1e-29
FB|FBgn0029752	157	TrxT "Thioredoxin T" [Drosophi	0.337	0.624	0.343	1.9e-10
UNIPROTKB|Q98TX1	105	TXN "Thioredoxin" [Ophiophagus	0.327	0.904	0.336	1.9e-10
UNIPROTKB|Q9BDJ3	105	TXN "Thioredoxin" [Callithrix	0.337	0.933	0.346	1.2e-09
UNIPROTKB|P29451	105	TXN "Thioredoxin" [Macaca mula	0.317	0.876	0.344	2.1e-09
RGD|621157	105	Txn1 "thioredoxin 1" [Rattus n	0.327	0.904	0.356	2.1e-09

TAIR|locus:2025625 ACHT4 "atypical CYS HIS rich thioredoxin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 153/250 (61%), Positives = 177/250 (70%)

Query:     1 MAELLSKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSS--PLTSDFHGHG 58
             M E++SK +LF     + H     S  P S  G   +K     L+L S  PL S F+G  
Sbjct:     1 MTEVISKTSLFLGACGNHHRVDDFSFSPVSFGGF-GLKKSFSCLKLKSQKPLRSVFYGKQ 59

Query:    59 VVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAG 118
             +VF +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+LV+SL +AG
Sbjct:    60 IVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAG 116

Query:   119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
             DKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL VHVLPFFRF
Sbjct:   117 DKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRF 176

Query:   179 YRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTXXXXXXXXXXXXXXXXXSFNYT 238
             YRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPT                 +F YT
Sbjct:   177 YRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKELNFTYT 236

Query:   239 PKPHPMPAPA 248
             PKP P+   A
Sbjct:   237 PKPVPVEKEA 246

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0031969 "chloroplast membrane" evidence=IDA

TAIR|locus:2051048 ACHT3 "atypical CYS HIS rich thioredoxin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 122/234 (52%), Positives = 152/234 (64%)

Query:     7 KANLFSYFNQDQHN-KSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENK 65
             K N  S FN+ + + +    + PKS +  C +  R  +    SP T     +G +    K
Sbjct:     8 KLNPIS-FNRARFDLRDFAGISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKK 66

Query:    66 AIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVD 125
              IP       F +  QT L IG+ Q+WWEK L+PNM+ V S QDLV SL +AGDKLVVVD
Sbjct:    67 KIPA------F-VRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVD 119

Query:   126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185
             FFSP CGGCKALHPKIC++AE NP+V+FLQVNYEEH+S+C SLN+HVLPFFRFYRG+ GR
Sbjct:   120 FFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGR 179

Query:   186 VCSFSCTNATIKKFKDALAKHTPDRCGLGPTXXXXXXXXXXXXXXXXXSFNYTP 239
             VCSFSCTNATI+KFK+AL KH  ++C +G T                 SF+Y P
Sbjct:   180 VCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEKELVAMAANKDLSFDYKP 233

GO:0005739 "mitochondrion" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2163168 ACHT5 "atypical CYS HIS rich thioredoxin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 103/198 (52%), Positives = 131/198 (66%)

Query:    23 SISVFPKSC--AGSCSMKLRSQALRLSSPLTS-DFHGHGVVFQE--NKAIPKRGSSSKFS 77
             +IS    +C  +G       +Q+    SP  S D   H +   +  N+ +    SSS   
Sbjct:     3 AISSLGTNCVLSGVSPFSQENQSKSKLSPFMSLDLKEHPMASADFTNQTLTAFSSSSASP 62

Query:    78 ISAQTG-LRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKA 136
               A+T  + + +  RWWEK    NM E+ SA  LV+SL +AGD+LVV+DF+SPGCGGCK+
Sbjct:    63 FQAKTSSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKS 122

Query:   137 LHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATI 196
             LHPKICQLAE NP+V FL+VN EE ++MC+ LNVHVLPFF+FYRGA G+VCSFSCT ATI
Sbjct:   123 LHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATI 182

Query:   197 KKFKDALAKHTPDRCGLG 214
              KFK AL KH  +RC LG
Sbjct:   183 NKFKKALDKHGSERCSLG 200

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2120860 ACHT1 "atypical CYS HIS rich thioredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/197 (37%), Positives = 118/197 (59%)

Query:    11 FSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLT-SDFHGHGVVFQENKAIPK 69
             FS +        S  +  +    SC+      +   SS LT S   G+ V    N+++  
Sbjct:    13 FSLYASSNSTPISTPIEARQLLSSCNRFYGLSSSSSSSSLTTSSLIGNLVFSSRNQSL-- 70

Query:    70 RGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSP 129
               S    +++A+T     +  +WWE+   PNM ++ SA+  + +L  AGD+LV+VDF+  
Sbjct:    71 --SVKVQALAAET-----EQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGT 123

Query:   130 GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSF 189
              CG C+A+ PK+C+ A+ +P++ FL+VN++E+KS+C SLNV VLP+F FYRGA G+V SF
Sbjct:   124 WCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESF 183

Query:   190 SCTNATIKKFKDALAKH 206
             SC+ A  +K ++A+ +H
Sbjct:   184 SCSLAKFQKLREAIERH 200

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010109 "regulation of photosynthesis" evidence=IMP

GO:0051776 "detection of redox state" evidence=IMP

TAIR|locus:2134443 ACHT2 "atypical CYS HIS rich thioredoxin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 65/157 (41%), Positives = 96/157 (61%)

Query:    44 LRL--SSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNM 101
             LRL  SSP  S  H H      +    +R  S    +     +   +  +WWE+   PNM
Sbjct:    47 LRLLSSSPSCSSSHYHPSSGLGSHLPLRRPKSQVVRVKVDENVAETEPPKWWERNA-PNM 105

Query:   102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 161
              ++ S ++ + +L  AG++LV+V+F+   C  C+AL PK+C+ A  +PD+ FL+VN++E+
Sbjct:   106 VDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDEN 165

Query:   162 KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 198
             K MC SLNV VLPFF FYRGA G++ SFSC+ A +KK
Sbjct:   166 KPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVKK 202

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

FB|FBgn0029752 TrxT "Thioredoxin T" [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 34/99 (34%), Positives = 55/99 (55%)

Query:   104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHK 162
             V +  DL + L  A DKLVV+DF++  CG CK + PK+ +LA E +  V  L+VN +E++
Sbjct:     5 VRNKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENE 64

Query:   163 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKD 201
              +    NV+ +P F F +G +       C +  + K  +
Sbjct:    65 DITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLME 103

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=NAS

GO:0000806 "Y chromosome" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=NAS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006457 "protein folding" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|Q98TX1 TXN "Thioredoxin" [Ophiophagus hannah (taxid:8665)]

 Score = 149 (57.5 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 34/101 (33%), Positives = 58/101 (57%)

Query:   109 DLVE---SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC 165
             DL E    L +AG KL+VVDF +  CG CK + P    + E  PDV F++++ ++ + + 
Sbjct:     7 DLTEFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVA 66

Query:   166 YSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
                +V  +P F+FY+  + +V  FS  N   +K ++A+ K+
Sbjct:    67 SHCDVKCMPTFQFYKN-NEKVHEFSGANK--EKLEEAIKKY 104

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q9BDJ3 TXN "Thioredoxin" [Callithrix jacchus (taxid:9483)]

 Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 36/104 (34%), Positives = 57/104 (54%)

Query:   101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
             ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct:     2 VKQIDSKDAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61

Query:   161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-----ATIKKF 199
              + +     V  +P F+F++    +V  FS  N     ATI +F
Sbjct:    62 CQDVASECEVKCMPTFQFFKKGQ-KVGEFSGANKEKLEATINEF 104

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|P29451 TXN "Thioredoxin" [Macaca mulatta (taxid:9544)]

 Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 32/93 (34%), Positives = 52/93 (55%)

Query:   101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
             ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct:     2 VKQIESKAAFQEALDDAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61

Query:   161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
              + +     V  +P F+F++    +V  FS  N
Sbjct:    62 CQDVASECEVKCMPTFQFFKKGQ-KVGEFSGAN 93

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

RGD|621157 Txn1 "thioredoxin 1" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 36/101 (35%), Positives = 54/101 (53%)

Query:   104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS 163
             + S +   E+L  AGDKLVVVDF +  CG CK + P    L +   +V FL+V+ ++ + 
Sbjct:     5 IESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQD 64

Query:   164 MCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-----ATIKKF 199
             +     V  +P F+FY+    +V  FS  N     ATI +F
Sbjct:    65 VAADCEVKCMPTFQFYKKGQ-KVGEFSGANKEKLEATITEF 104

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=TAS

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009314 "response to radiation" evidence=ISO;ISS

GO:0010269 "response to selenium ion" evidence=IEP

GO:0014823 "response to activity" evidence=IEP

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0015037 "peptide disulfide oxidoreductase activity" evidence=IEA;ISO

GO:0016999 "antibiotic metabolic process" evidence=IEP

GO:0019899 "enzyme binding" evidence=IPI

GO:0022900 "electron transport chain" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISO;ISS

GO:0035690 "cellular response to drug" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043388 "positive regulation of DNA binding" evidence=ISO;ISS

GO:0045454 "cell redox homeostasis" evidence=IEA;ISO

GO:0046826 "negative regulation of protein export from nucleus" evidence=IEA;ISO

GO:0048678 "response to axon injury" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=ISO;ISS

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0071455 "cellular response to hyperoxia" evidence=IEP

GO:0071548 "response to dexamethasone stimulus" evidence=IEP

GO:0097068 "response to thyroxine stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64654	TRL11_ARATH	No assigned EC number	0.6363	0.9241	0.9745	yes	no
Q10M18	TRL12_ORYSJ	No assigned EC number	0.6976	0.6862	0.7132	yes	no
Q6Z4N3	TRL11_ORYSJ	No assigned EC number	0.6966	0.7103	0.7383	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-18
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	5e-12
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	6e-10
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	2e-09
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	9e-09
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-08
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	1e-07
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	1e-07
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	1e-06
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	2e-06
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	4e-06
cd02989	113	cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam	1e-05
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	5e-05
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	6e-05
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	9e-05
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-04
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	2e-04
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	4e-04
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	6e-04
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	9e-04
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	0.001
cd03023	154	cd03023, DsbA_Com1_like, DsbA family, Com1-like su	0.001
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	0.003
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	0.003

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 78.4 bits (194), Expect = 2e-18
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
              K VVVDF++P CG CKA+ P + +LAE  P V+F++V+ +E+  +     V  +P F
Sbjct: 8   KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTF 67

Query: 177 RFYRG 181
            F++ 
Sbjct: 68  LFFKN 72

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
             DK V+VDF++P CG CKAL P+  +LA E   DV+F +V+ +E+  +     V   P 
Sbjct: 16  KSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADENPDLASEYGVRGFPT 75

Query: 176 FRFYRG 181
            +F++ 
Sbjct: 76  IKFFKN 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVL 173
              K V+V+F++P CG CKAL P+  +LA+    +  V   +V+   +  +C    V   
Sbjct: 13  KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGY 72

Query: 174 PFFRFYRG 181
           P  + +  
Sbjct: 73  PTIKLFPN 80

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS- 163
            S ++L E+L  A  +LVV++F     G    ++P + +L+    DV FL VN +E+ S 
Sbjct: 1   HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST 60

Query: 164 --MCYSLNVHVLPFFRFYRGA 182
             +C    +  +P F FY+  
Sbjct: 61  MELCRREKIIEVPHFLFYKDG 81

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
            DK V+VDF++P CG CK + P + +LA E    V+F+++N +E+
Sbjct: 13  SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN 57

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           +  V S  +   +L  + ++LV+VDF++  CG CK + P   + ++    + F++V+ +E
Sbjct: 2   VHIVTSQAEFESTL--SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE 59

Query: 161 HKSMCYSLNVHVLPFFRFYR 180
              +    N+  +P F+ ++
Sbjct: 60  LSEVAEKENITSMPTFKVFK 79

Length = 98

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 99  PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVN 157
                         SL     K V+VDF++P C  C+A  P + +LAE    DV+ + VN
Sbjct: 12  ATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVN 71

Query: 158 Y---EEHKSMCYSLNVHVLPFFRFY 179
                   +  + + V  +P    +
Sbjct: 72  VDDENPDLAAEFGVAVRSIPTLLLF 96

Length = 127

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 123 VVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           +VDF++P CG C+AL P++ + A      V+   V+ ++++S+C   N+   P  R Y
Sbjct: 23  LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY 80

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
              VVV F+ PG   CK L   + +LA   P+ +F+++N E+   +   L++ VLP    
Sbjct: 24  GTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK-AFLVNYLDIKVLPTLLV 82

Query: 179 YRG--AHGRVCSFS 190
           Y+       +  F 
Sbjct: 83  YKNGELIDNIVGFE 96

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHV 172
           L+H  D+L++V + SP CG C+ L P + ++  E +  V F++++ +E + +  +  +  
Sbjct: 8   LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG 67

Query: 173 LPFFRFYR 180
            P  +F++
Sbjct: 68  TPTVQFFK 75

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRFY 179
           +V F++P C  C+AL P + +LA +N  V+F  V+ +E  ++        V  +P    +
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60

Query: 180 RGAHGRV 186
               G  
Sbjct: 61  GPGIGVK 67

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 161
           REV+  ++  E +     + VV  F+ P    CK +   +  LA+ + + +F++VN E+ 
Sbjct: 7   REVSDEKEFFEIV--KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA 64

Query: 162 KSMCYSLNVHVLPFFRFYR 180
             +   LN+ VLP    ++
Sbjct: 65  PFLVEKLNIKVLPTVILFK 83

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 119 DKLVVVDFFSPGCGGCKALHP---KIC-QLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
           +++V+V F++P CG CK L P   K    L E   ++    V+  E   +     V   P
Sbjct: 49  NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108

Query: 175 FFRFYRG 181
             +F+  
Sbjct: 109 TIKFFNK 115

Length = 477

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSM 164
           S ++  E L     KL+V+ F++P    CK ++    +LA E  P V FL +  EE   +
Sbjct: 1   SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI 60

Query: 165 CYSLNVHVLPFFRFYRG 181
                +  +P F F+R 
Sbjct: 61  SEKFEITAVPTFVFFRN 77

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 17/82 (20%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAE----MNPDVQFLQVNYEEHKSMCYS----- 167
              K V+V F  P C  CK LH ++ +  +    +  +   + VN ++ K +        
Sbjct: 3   GNGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETL 62

Query: 168 --------LNVHVLPFFRFYRG 181
                     V   P   F  G
Sbjct: 63  SEKELARKYGVRGTPTIVFLDG 84

Length = 105

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 118 GDKLVVVDFFSPGCGGCKALHP---KICQ-LAEMNPDVQFLQVNYEEHKSMCYSLNVHVL 173
             + V+V+F++P CG CK+L P   K    L +  P ++  +V+  E K +     V   
Sbjct: 17  SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGY 76

Query: 174 PFFRFYR 180
           P  + +R
Sbjct: 77  PTLKIFR 83

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHP---KICQLAEMNPDVQFLQVNYEEHKSMC 165
             +K V+V+F++P CG CK L P   K+ +  + +PD+   +V+    K + 
Sbjct: 11  LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLA 62

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEHKSMC 165
            K+V++ F++  C  C+A  P++ +L E    P V+ + V+ +  +   
Sbjct: 1   GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDEEEW 49

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNY-EEHKSMCYSLNVHVLPF 175
           K V+V+F++P CG CK L P+  +LA +     DV   +V+  E +K +     V   P 
Sbjct: 19  KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT 78

Query: 176 FRFY 179
            +F+
Sbjct: 79  LKFF 82

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 124 VDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           V FF+P CG CK L P   QLA+     NP V+  +V+  +H+ +C    V   P    +
Sbjct: 21  VKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80

Query: 180 RG 181
           + 
Sbjct: 81  KD 82

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEE 160
           K+V+V+F++  C  C+A  P++  LA+   +  V+ + VN ++
Sbjct: 20  KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239321 cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF 153
            + +V+FF   CG CK L P++ +L + +PDV+ 
Sbjct: 6   DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRV 39

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. Length = 154

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 119 DKLVVVDFFSPGCGGCKALHP 139
           D + +V+F++P CG CK L P
Sbjct: 18  DDVWLVEFYAPWCGHCKNLAP 38

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAE 146
           DK V+V+F++P CG CKAL P   +LAE
Sbjct: 18  DKDVLVEFYAPWCGHCKALAPIYEELAE 45

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.87
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.86
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.86
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.85
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.84
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.84
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.84
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.84
PHA02278	103	thioredoxin-like protein	99.83
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.83
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.83
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.82
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.82
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.81
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.81
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.81
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.81
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.8
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.8
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.8
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.8
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.79
PRK09381	109	trxA thioredoxin; Provisional	99.78
PTZ00051	98	thioredoxin; Provisional	99.77
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.77
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.77
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.77
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.77
PRK10996	139	thioredoxin 2; Provisional	99.77
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.76
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.75
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.75
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.75
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.75
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.74
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.74
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.73
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.73
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.73
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.72
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.72
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.71
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.7
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.7
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.69
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.68
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.68
PLN02309	457	5'-adenylylsulfate reductase	99.68
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.67
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.66
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.66
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.65
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.65
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.64
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.64
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.64
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.63
PTZ00062	204	glutaredoxin; Provisional	99.62
PTZ00102	477	disulphide isomerase; Provisional	99.61
PTZ00102	477	disulphide isomerase; Provisional	99.6
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.59
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.54
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.53
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.49
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.48
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.46
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.46
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.45
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.44
PHA02125	75	thioredoxin-like protein	99.44
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.43
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.4
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.35
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.35
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.33
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.32
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.31
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.31
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.3
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.28
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.28
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.27
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.27
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.25
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.25
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.24
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.22
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.21
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.18
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.15
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.15
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.14
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.13
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.11
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.07
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.02
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.0
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.0
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.96
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.96
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.95
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.95
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.94
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.91
PTZ00056	199	glutathione peroxidase; Provisional	98.9
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.9
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.89
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.88
smart00594	122	UAS UAS domain.	98.85
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.79
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.76
PF13728	215	TraF: F plasmid transfer operon protein	98.75
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.73
PLN02412	167	probable glutathione peroxidase	98.72
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.72
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.67
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.66
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.61
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.56
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.53
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.52
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.51
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.51
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.47
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.47
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.47
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.43
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.43
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.41
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.38
PTZ00256	183	glutathione peroxidase; Provisional	98.38
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.37
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.36
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.31
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.31
PRK11200	85	grxA glutaredoxin 1; Provisional	98.28
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.27
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.25
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.24
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.22
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.21
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.2
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.19
PRK13190	202	putative peroxiredoxin; Provisional	98.18
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.13
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.12
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.12
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.12
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.1
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.07
PRK15000	200	peroxidase; Provisional	98.06
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.01
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.0
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.99
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.93
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.92
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.91
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.9
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.9
KOG3171	273	consensus Conserved phosducin-like protein [Signal	97.89
PRK13189	222	peroxiredoxin; Provisional	97.86
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.84
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.81
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.78
PRK13599	215	putative peroxiredoxin; Provisional	97.78
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.77
PRK13191	215	putative peroxiredoxin; Provisional	97.74
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.64
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.62
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	97.59
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.58
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.57
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.56
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.49
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.36
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.36
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.33
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.32
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.29
PRK10329	81	glutaredoxin-like protein; Provisional	97.29
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.24
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.24
PHA03050	108	glutaredoxin; Provisional	97.14
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.05
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.05
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.93
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.92
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	96.84
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.84
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.83
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.83
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	96.8
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	96.77
PRK10824	115	glutaredoxin-4; Provisional	96.66
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.63
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.61
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	96.59
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.5
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.49
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.4
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.18
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.14
PRK10638	83	glutaredoxin 3; Provisional	96.11
PTZ00062	204	glutaredoxin; Provisional	95.46
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	94.38
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	94.3
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	94.11
KOG2640	319	consensus Thioredoxin [Function unknown]	93.96
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	93.9
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	93.89
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	93.87
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	93.62
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	92.75
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	92.68
COG1331	667	Highly conserved protein containing a thioredoxin	92.41
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	91.56
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	91.42
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	90.58
cd02978	72	KaiB_like KaiB-like family; composed of the circad	89.96
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	89.78
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	89.38
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	89.31
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	88.57
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	88.53
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	87.55
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	87.43
PRK09301	103	circadian clock protein KaiB; Provisional	87.2
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	85.94
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	85.41
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	83.23
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	82.43
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	82.04
PHA03075	123	glutaredoxin-like protein; Provisional	81.47
COG3019	149	Predicted metal-binding protein [General function	81.11
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	80.01

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=5.7e-22  Score=164.64  Aligned_cols=105  Identities=19%  Similarity=0.377  Sum_probs=93.5

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      ...+.+..+|++.+.+ .+.||+|+|||+||+||+.+.|.++++..+|.+ ++|++||.|++.+++.+|+|..+||+++|
T Consensus        44 ~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf  122 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF  122 (150)
T ss_pred             cccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence            3446677899999986 689999999999999999999999999999865 99999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +||+ .+ +...|..+.+.+.++|++.++
T Consensus       123 knGe-~~-d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  123 KNGE-KV-DRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             ECCE-Ee-eeecccCCHHHHHHHHHHHhc
Confidence            9997 34 444488999999999999863

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.7e-21  Score=152.33  Aligned_cols=89  Identities=44%  Similarity=0.749  Sum_probs=78.9

Q ss_pred             HhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCcc
Q 022923          115 WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNA  194 (290)
Q Consensus       115 ~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~  194 (290)
                      ...++++++|+|||+|||+|+.+.|.+++|+.+|+++.|++||+|++.++++.|+|+++|||+||++|+ ++..+.  +.
T Consensus        17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~v--Ga   93 (106)
T KOG0907|consen   17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVV--GA   93 (106)
T ss_pred             hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEe--cC
Confidence            345679999999999999999999999999999999999999999999999999999999999999998 455554  55


Q ss_pred             CHHHHHHHHHhh
Q 022923          195 TIKKFKDALAKH  206 (290)
Q Consensus       195 ~~~~l~~~L~k~  206 (290)
                      +.+++++.|+++
T Consensus        94 ~~~~l~~~i~~~  105 (106)
T KOG0907|consen   94 NKAELEKKIAKH  105 (106)
T ss_pred             CHHHHHHHHHhc
Confidence            666888887765

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.86  E-value=1.1e-20  Score=148.97  Aligned_cols=98  Identities=24%  Similarity=0.393  Sum_probs=85.5

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH---hHHHhcCccccCceEEEeCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK---SMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~---~l~~~~~I~~~PT~~~~~~G  182 (290)
                      +.++|++.+....+++|||+|||+||++|+.+.|.+++++++++++.|+.||+|++.   +++++|+|.++||++||++|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G   81 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG   81 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence            578999999876799999999999999999999999999999988999999999874   89999999999999999998


Q ss_pred             CceeeeecCCccCHHHHHHHHHhh
Q 022923          183 HGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      + .+..+.  +...+++.+.+.++
T Consensus        82 ~-~v~~~~--G~~~~~l~~~~~~~  102 (103)
T cd02985          82 E-KIHEEE--GIGPDELIGDVLYY  102 (103)
T ss_pred             e-EEEEEe--CCCHHHHHHHHHhc
Confidence            7 444443  57778888877654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.85  E-value=1.6e-20  Score=145.33  Aligned_cols=99  Identities=26%  Similarity=0.527  Sum_probs=89.7

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      .+.++|.+.+.. .+++++|+||++||++|+.+.|.|.++++.++ ++.|+.||++++..++++|+|.++||+++|++|+
T Consensus         4 lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~   82 (103)
T PF00085_consen    4 LTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK   82 (103)
T ss_dssp             ESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE
T ss_pred             CCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc
Confidence            455789999954 58999999999999999999999999999998 7999999999999999999999999999999998


Q ss_pred             ceeeeecCCccCHHHHHHHHHhh
Q 022923          184 GRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                       ....+. |..+.++|.++|++|
T Consensus        83 -~~~~~~-g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   83 -EVKRYN-GPRNAESLIEFIEKH  103 (103)
T ss_dssp             -EEEEEE-SSSSHHHHHHHHHHH
T ss_pred             -EEEEEE-CCCCHHHHHHHHHcC
Confidence             444554 789999999999986

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.84  E-value=8.9e-21  Score=152.30  Aligned_cols=77  Identities=14%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      .++|++.+....++++||+|||+||++|+.|.|.+++++++|++ +.|++||+|++++++++|+|.++||+++|++|+
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            46888888765789999999999999999999999999999987 689999999999999999999999999999997

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.84  E-value=3.2e-20  Score=145.02  Aligned_cols=98  Identities=16%  Similarity=0.354  Sum_probs=85.1

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      ++++++ .++|++.+  ..+++++|+||++||++|+.+.|.++++++++++ +.|++|||++++.+|++|+|.++||+++
T Consensus         2 ~~~~l~-~~~f~~~v--~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLD-RGDFDAAV--NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcC-HhhHHHHh--cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            456664 56899888  4569999999999999999999999999999865 8999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHH
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      |++|+ .+..+. |.++.+.|.+|
T Consensus        79 ~~~g~-~~~~~~-G~~~~~~l~~f  100 (101)
T cd03003          79 FPSGM-NPEKYY-GDRSKESLVKF  100 (101)
T ss_pred             EcCCC-CcccCC-CCCCHHHHHhh
Confidence            99987 344444 78899888776

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.84  E-value=3.5e-20  Score=145.28  Aligned_cols=101  Identities=23%  Similarity=0.460  Sum_probs=85.6

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      ++.++ +.++|++.+.. .+++++|+|||+||++|+.+.|.|+++++++. .+.|++||+++++++|++|+|.++||+++
T Consensus         2 ~v~~l-~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITL-TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEc-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            44555 45789988764 56799999999999999999999999999985 48999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccC-HHHHHHHH
Q 022923          179 YRGAHGRVCSFSCTNAT-IKKFKDAL  203 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~-~~~l~~~L  203 (290)
                      |++|+..+..+. |..+ .++|.+||
T Consensus        80 ~~~g~~~~~~~~-G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNASKYHSYN-GWHRDADSILEFI  104 (104)
T ss_pred             EcCCCCCceEcc-CCCCCHHHHHhhC
Confidence            999843555555 6665 88888774

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.84  E-value=3.7e-20  Score=148.89  Aligned_cols=101  Identities=13%  Similarity=0.171  Sum_probs=86.2

Q ss_pred             CCeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHH-HhcCccccCc
Q 022923           99 PNMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMC-YSLNVHVLPF  175 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~-~~~~I~~~PT  175 (290)
                      +++.++++ ++|++.+. ..++++++|+|||+||++|+.+.|.++++++++.+ +.|++|||+++.++| ++|+|.++||
T Consensus         9 ~~v~~l~~-~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT   87 (113)
T cd03006           9 SPVLDFYK-GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV   87 (113)
T ss_pred             CCeEEech-hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence            45666655 57887632 35789999999999999999999999999999875 899999999999999 5899999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      +++|++|+ ....+. |.++.+.|..|
T Consensus        88 l~lf~~g~-~~~~y~-G~~~~~~i~~~  112 (113)
T cd03006          88 IHLYYRSR-GPIEYK-GPMRAPYMEKF  112 (113)
T ss_pred             EEEEECCc-cceEEe-CCCCHHHHHhh
Confidence            99999987 455555 88999998876

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PHA02278 thioredoxin-like protein

Probab=99.83  E-value=3.9e-20  Score=146.41  Aligned_cols=94  Identities=19%  Similarity=0.260  Sum_probs=80.1

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEecccc----HhHHHhcCccccCceEEE
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~  179 (290)
                      .+.++|.+.+  .++++++|+|||+||++|+.+.|.++++++++ .++.|++||+|++    ++++++|+|.++|||++|
T Consensus         2 ~~~~~~~~~i--~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f   79 (103)
T PHA02278          2 NSLVDLNTAI--RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY   79 (103)
T ss_pred             CCHHHHHHHH--hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence            4568899988  47899999999999999999999999999885 4478999999976    689999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHH
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      ++|+ .+ ....|..+.+++.++
T Consensus        80 k~G~-~v-~~~~G~~~~~~l~~~  100 (103)
T PHA02278         80 KDGQ-LV-KKYEDQVTPMQLQEL  100 (103)
T ss_pred             ECCE-EE-EEEeCCCCHHHHHhh
Confidence            9997 34 444477888877664

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.83  E-value=3.1e-20  Score=145.92  Aligned_cols=93  Identities=13%  Similarity=0.241  Sum_probs=83.0

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-ccHhHHHhcCccccCceEEEeCCCcee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYRGAHGRV  186 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-~~~~l~~~~~I~~~PT~~~~~~G~~~v  186 (290)
                      +++.+.+...++++++|+|||+||++|+.+.|.|++++++++++.++.||.+ +++.++++|+|.++||+++|++|  .+
T Consensus         7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~   84 (100)
T cd02999           7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR   84 (100)
T ss_pred             hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence            3566666667899999999999999999999999999999999999999999 89999999999999999999888  35


Q ss_pred             eeecCCccCHHHHHHHH
Q 022923          187 CSFSCTNATIKKFKDAL  203 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L  203 (290)
                      ..+. |.++.++|.+||
T Consensus        85 ~~~~-G~~~~~~l~~f~  100 (100)
T cd02999          85 VRYN-GTRTLDSLAAFY  100 (100)
T ss_pred             eEec-CCCCHHHHHhhC
Confidence            5555 889999998875

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.83  E-value=1e-19  Score=151.45  Aligned_cols=106  Identities=14%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceE-E
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR-F  178 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~-~  178 (290)
                      +.++.+.++|++.+...++++|+|+|||+||++|+.+.|.++++++++++ +.|++||+|+++++++.|+|++.||++ |
T Consensus         5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f   84 (142)
T PLN00410          5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF   84 (142)
T ss_pred             HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence            45678899999999876899999999999999999999999999999988 788999999999999999999887766 9


Q ss_pred             EeCCCceeeeecCC--------ccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCT--------NATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g--------~~~~~~l~~~L~k~~  207 (290)
                      |++|+. ...+..|        ..+.++|++.++.+.
T Consensus        85 fk~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410         85 FRNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             EECCeE-EEEEecccccccccccCCHHHHHHHHHHHH
Confidence            999873 4444445        478889999888775

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.82  E-value=1.5e-19  Score=142.06  Aligned_cols=98  Identities=18%  Similarity=0.299  Sum_probs=84.8

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      ++|.+.++|.+.+  +.+++++|+|||+||++|+.+.|.+.+++++++  .+.|+.+|+| +.+++++|+|+++||+++|
T Consensus         2 ~~i~~~~~~~~~i--~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~   78 (102)
T cd02948           2 VEINNQEEWEELL--SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY   78 (102)
T ss_pred             eEccCHHHHHHHH--ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence            3578889999988  468999999999999999999999999999986  3789999999 7889999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHh
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      ++|+  ......| .+.+.+.++|++
T Consensus        79 ~~g~--~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          79 KNGE--LVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             ECCE--EEEEEec-CChHHHHHHHhh
Confidence            9986  3344424 588999998875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.82  E-value=1e-19  Score=140.39  Aligned_cols=94  Identities=20%  Similarity=0.293  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +|++.+..+.++++||+||++||++|+.+.|.++++++.+++ +.|++||++++..++++|+|.++||+++|++|+  ..
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~--~~   79 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ--PV   79 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE--Ee
Confidence            577777666688999999999999999999999999999864 889999999999999999999999999999886  33


Q ss_pred             eecCCccCHHHHHHHHH
Q 022923          188 SFSCTNATIKKFKDALA  204 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~  204 (290)
                      ....|..+.++|.++|+
T Consensus        80 ~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          80 DGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             eeecCCCCHHHHHHHhC
Confidence            33447889999998874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.81  E-value=2.2e-19  Score=142.01  Aligned_cols=100  Identities=15%  Similarity=0.345  Sum_probs=84.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC----C---CcEEEEEeccccHhHHHhcCccc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----P---DVQFLQVNYEEHKSMCYSLNVHV  172 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~---~v~~~~Vd~d~~~~l~~~~~I~~  172 (290)
                      ++++++ .++|++.+  ..+++++|+|||+||++|+.+.|.|+++++.+    +   ++.|++||++++.+++++|+|++
T Consensus         2 ~v~~l~-~~~f~~~i--~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~   78 (108)
T cd02996           2 EIVSLT-SGNIDDIL--QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK   78 (108)
T ss_pred             ceEEcC-HhhHHHHH--hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence            345554 57899877  46789999999999999999999999998764    2   48999999999999999999999


Q ss_pred             cCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      +||+++|++|+.....+. |.++.++|.+||
T Consensus        79 ~Ptl~~~~~g~~~~~~~~-g~~~~~~l~~fi  108 (108)
T cd02996          79 YPTLKLFRNGMMMKREYR-GQRSVEALAEFV  108 (108)
T ss_pred             CCEEEEEeCCcCcceecC-CCCCHHHHHhhC
Confidence            999999999972233444 889999998875

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.81  E-value=2.1e-19  Score=143.49  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             CHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          106 SAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       106 s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      +.++|.+.+. ...+++++|+|||+||++|+.+.|.+++++++++  ++.|++||+++++.++++|+|.++||+++|++|
T Consensus        10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g   89 (111)
T cd02963          10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING   89 (111)
T ss_pred             eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence            5567776554 3468999999999999999999999999999985  589999999999999999999999999999988


Q ss_pred             CceeeeecCCccCHHHHHHHHHhh
Q 022923          183 HGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +  ......|..+.++|.++|+++
T Consensus        90 ~--~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          90 Q--VTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             E--EEEEecCCCCHHHHHHHHhcC
Confidence            6  455555788999999999863

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.81  E-value=5.6e-19  Score=141.84  Aligned_cols=84  Identities=25%  Similarity=0.463  Sum_probs=79.5

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      .+.+.+|++.++|.+.+  .++++|+|+||++||++|+.+.|.+++++++|++++|++||++++++++++|+|.++||++
T Consensus         3 ~g~v~~i~~~~~~~~~i--~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l   80 (113)
T cd02989           3 HGKYREVSDEKEFFEIV--KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI   80 (113)
T ss_pred             CCCeEEeCCHHHHHHHH--hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence            45788999999999999  4578999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCC
Q 022923          178 FYRGAH  183 (290)
Q Consensus       178 ~~~~G~  183 (290)
                      +|++|+
T Consensus        81 ~fk~G~   86 (113)
T cd02989          81 LFKNGK   86 (113)
T ss_pred             EEECCE
Confidence            999997

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.81  E-value=5.2e-19  Score=141.50  Aligned_cols=100  Identities=11%  Similarity=0.194  Sum_probs=84.2

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCce
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR  185 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~  185 (290)
                      .++|++.+...++++|+|+|+|+||++|+.+.|.+++++++|++ +.|++||+|+.+++++.|+|...||++||++|+-.
T Consensus         2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986           2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence            46788888876899999999999999999999999999999998 99999999999999999999999999999999822


Q ss_pred             eeeecCCc--------cCHHHHHHHHHhh
Q 022923          186 VCSFSCTN--------ATIKKFKDALAKH  206 (290)
Q Consensus       186 v~~~~~g~--------~~~~~l~~~L~k~  206 (290)
                      .+.+..|+        .+.++|++.++-.
T Consensus        82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~  110 (114)
T cd02986          82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI  110 (114)
T ss_pred             EEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence            23332222        3457777776643

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.7e-19  Score=163.15  Aligned_cols=107  Identities=21%  Similarity=0.437  Sum_probs=94.7

Q ss_pred             CeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceE
Q 022923          100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      .+.+|++ .+|.+.+. .+..+||+|+||+|||++|+.+.|.+++++..|.+ +.+++||||+++.++.+|+|+++||++
T Consensus        24 ~I~dvT~-anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~  102 (304)
T COG3118          24 GIKDVTE-ANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY  102 (304)
T ss_pred             cceechH-hHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence            4677777 46777666 55566999999999999999999999999999965 999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      .|++|+ -+.+|. |....+.+++||+++++.
T Consensus       103 af~dGq-pVdgF~-G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         103 AFKDGQ-PVDGFQ-GAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EeeCCc-CccccC-CCCcHHHHHHHHHHhcCh
Confidence            999998 566776 888999999999999854

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.80  E-value=9.7e-19  Score=136.33  Aligned_cols=98  Identities=14%  Similarity=0.323  Sum_probs=83.7

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      ++++++ .++|++.+   .++ +||+|||+||++|+.+.|.|+++++.+.  ++.|++||+++++.++++|+|.++||++
T Consensus         2 ~v~~l~-~~~f~~~~---~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   76 (101)
T cd02994           2 NVVELT-DSNWTLVL---EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY   76 (101)
T ss_pred             ceEEcC-hhhHHHHh---CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence            355664 56898876   233 7899999999999999999999998864  5899999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      +|++|+  +..+. |..+.++|.++|++
T Consensus        77 ~~~~g~--~~~~~-G~~~~~~l~~~i~~  101 (101)
T cd02994          77 HAKDGV--FRRYQ-GPRDKEDLISFIEE  101 (101)
T ss_pred             EeCCCC--EEEec-CCCCHHHHHHHHhC
Confidence            999886  44444 88999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.2e-19  Score=158.35  Aligned_cols=106  Identities=31%  Similarity=0.514  Sum_probs=99.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      .|+.|.+.++|...+...+.|.|+|+|+|+||++|+++.|.+..++.+|++..|++||+|+...++..+||.++|||++|
T Consensus         2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff   81 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF   81 (288)
T ss_pred             CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence            46789999999999998889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +||. ++..+  .+.+...|++.+.+|+.
T Consensus        82 ~ng~-kid~~--qGAd~~gLe~kv~~~~s  107 (288)
T KOG0908|consen   82 RNGV-KIDQI--QGADASGLEEKVAKYAS  107 (288)
T ss_pred             ecCe-Eeeee--cCCCHHHHHHHHHHHhc
Confidence            9998 66655  48999999999999974

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.80  E-value=9.5e-19  Score=140.02  Aligned_cols=83  Identities=30%  Similarity=0.591  Sum_probs=76.2

Q ss_pred             CCeeEeCCHhHHHHHHHhcC-CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923           99 PNMREVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~-~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      +.+.+|++ ++|.+.+...+ +++++|+||++||++|+.+.|.+++++++|+++.|++||++++ .++++|+|.++||++
T Consensus         4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~   81 (113)
T cd02957           4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL   81 (113)
T ss_pred             ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence            46778888 89999986432 5899999999999999999999999999999999999999998 999999999999999


Q ss_pred             EEeCCC
Q 022923          178 FYRGAH  183 (290)
Q Consensus       178 ~~~~G~  183 (290)
                      +|++|+
T Consensus        82 ~f~~G~   87 (113)
T cd02957          82 VYKNGE   87 (113)
T ss_pred             EEECCE
Confidence            999997

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.79  E-value=7.8e-19  Score=142.58  Aligned_cols=103  Identities=11%  Similarity=0.112  Sum_probs=89.6

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChH--HH--HHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGG--CK--ALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHV  172 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~--Ck--~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~  172 (290)
                      .+..++ .++|++.+.. ++.++|++||++||++  |+  .+.|.+.+++.++   .++.|++||+|++++++++|+|++
T Consensus        10 ~v~~lt-~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~   87 (120)
T cd03065          10 RVIDLN-EKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE   87 (120)
T ss_pred             ceeeCC-hhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence            455555 4799998875 5789999999999987  99  8899999999987   459999999999999999999999


Q ss_pred             cCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +||+++|++|+  +..+. |.++.+.|.++|++..
T Consensus        88 iPTl~lfk~G~--~v~~~-G~~~~~~l~~~l~~~~  119 (120)
T cd03065          88 EDSIYVFKDDE--VIEYD-GEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccEEEEEECCE--EEEee-CCCCHHHHHHHHHHHh
Confidence            99999999997  44554 8899999999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK09381 trxA thioredoxin; Provisional

Probab=99.78  E-value=3.7e-18  Score=134.95  Aligned_cols=104  Identities=14%  Similarity=0.358  Sum_probs=89.7

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .|++++. ++|.+.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++.++.++++|+|.++||+++
T Consensus         4 ~v~~~~~-~~~~~~v~-~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (109)
T PRK09381          4 KIIHLTD-DSFDTDVL-KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   81 (109)
T ss_pred             cceeeCh-hhHHHHHh-cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence            4667755 68887765 358899999999999999999999999999995 48999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+  +.....|..+.+++.++|++++
T Consensus        82 ~~~G~--~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         82 FKNGE--VAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EeCCe--EEEEecCCCCHHHHHHHHHHhc
Confidence            99886  4434447788999999998875

>PTZ00051 thioredoxin; Provisional

Probab=99.77  E-value=5.9e-18  Score=130.91  Aligned_cols=95  Identities=23%  Similarity=0.455  Sum_probs=82.6

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      +.++++.++|.+.+  ..+++++|+||++||++|+.+.|.+++++++++++.|+.||++++..++++|+|.++||+++|+
T Consensus         2 v~~i~~~~~~~~~~--~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   79 (98)
T PTZ00051          2 VHIVTSQAEFESTL--SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK   79 (98)
T ss_pred             eEEecCHHHHHHHH--hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence            56789999999988  4688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHH
Q 022923          181 GAHGRVCSFSCTNATIKKFK  200 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~  200 (290)
                      +|+ .+..+. | ...++|.
T Consensus        80 ~g~-~~~~~~-G-~~~~~~~   96 (98)
T PTZ00051         80 NGS-VVDTLL-G-ANDEALK   96 (98)
T ss_pred             CCe-EEEEEe-C-CCHHHhh
Confidence            987 343333 3 4555554

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.77  E-value=4.3e-18  Score=134.04  Aligned_cols=99  Identities=23%  Similarity=0.474  Sum_probs=84.2

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccc--cHhHHHhcCccccCceEE
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~  178 (290)
                      .+++ .++|.+.+.. .+++++|+||++||++|+.+.|.++++++.+++ +.|+.||+++  +.+++++|+|.++||+++
T Consensus         3 ~~l~-~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002           3 YELT-PKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             EEcc-hhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence            3444 4688888864 588899999999999999999999999999864 8999999998  889999999999999999


Q ss_pred             EeCCCc----eeeeecCCccCHHHHHHHH
Q 022923          179 YRGAHG----RVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       179 ~~~G~~----~v~~~~~g~~~~~~l~~~L  203 (290)
                      |++|+.    ....|. |.++.++|.+||
T Consensus        81 ~~~~~~~~~~~~~~~~-G~~~~~~l~~fi  108 (109)
T cd03002          81 FRPPKKASKHAVEDYN-GERSAKAIVDFV  108 (109)
T ss_pred             EeCCCccccccccccc-CccCHHHHHHHh
Confidence            998861    233444 889999999987

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.77  E-value=6.9e-18  Score=131.22  Aligned_cols=100  Identities=21%  Similarity=0.385  Sum_probs=85.5

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.++ +.++|.+.+.. .+++++|+||++||++|+.+.|.|.++++++. .+.|+.+|++++.+++++|+|+++||+++|
T Consensus         2 v~~l-~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVEL-TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEc-CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            3444 44688888764 46779999999999999999999999999875 589999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHH
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      ++|+.....+. |+.+.++|.+|+
T Consensus        80 ~~~~~~~~~~~-g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKNSPQDYQ-GGRTAKAIVSAA  102 (103)
T ss_pred             CCCCcceeecC-CCCCHHHHHHHh
Confidence            98854455555 789999999886

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.77  E-value=5.3e-18  Score=130.76  Aligned_cols=95  Identities=25%  Similarity=0.451  Sum_probs=81.1

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH-CCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  184 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~-~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~  184 (290)
                      +.++|++.+....+++++|+||++||++|+.+.|.+++++++ ++++.|+++|++++++++++|+|+++||+++|++|+ 
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-   79 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT-   79 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-
Confidence            357888888765579999999999999999999999999999 668999999999999999999999999999999886 


Q ss_pred             eeeeecCCccCHHHHHHHH
Q 022923          185 RVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       185 ~v~~~~~g~~~~~~l~~~L  203 (290)
                       ..... .+.+.++|.+.|
T Consensus        80 -~~~~~-~g~~~~~l~~~~   96 (97)
T cd02984          80 -IVDRV-SGADPKELAKKV   96 (97)
T ss_pred             -EEEEE-eCCCHHHHHHhh
Confidence             33333 346677777665

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.77  E-value=3.9e-18  Score=132.41  Aligned_cols=93  Identities=23%  Similarity=0.489  Sum_probs=80.1

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG  181 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~  181 (290)
                      +.++|++.+.   +++++|+||++||++|+.+.|.+.++++++.    ++.|+.||++++..++++|+|.++||+++|++
T Consensus         6 ~~~~f~~~~~---~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   82 (102)
T cd03005           6 TEDNFDHHIA---EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD   82 (102)
T ss_pred             CHHHHHHHhh---cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeC
Confidence            4468998883   2359999999999999999999999999874    48999999999999999999999999999998


Q ss_pred             CCceeeeecCCccCHHHHHHHH
Q 022923          182 AHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       182 G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      |+ .+..+. |..+.++|.+||
T Consensus        83 g~-~~~~~~-G~~~~~~l~~~i  102 (102)
T cd03005          83 GE-KVDKYK-GTRDLDSLKEFV  102 (102)
T ss_pred             CC-eeeEee-CCCCHHHHHhhC
Confidence            87 444444 888998888774

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PRK10996 thioredoxin 2; Provisional

Probab=99.77  E-value=6.9e-18  Score=140.21  Aligned_cols=102  Identities=22%  Similarity=0.437  Sum_probs=88.0

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.++ +.++|.+.+  ..+++++|+||++||++|+.+.|.+.++++++. ++.|++||++++++++++|+|.++||+++|
T Consensus        37 ~i~~-~~~~~~~~i--~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~  113 (139)
T PRK10996         37 VINA-TGETLDKLL--QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF  113 (139)
T ss_pred             CEEc-CHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence            4443 557888877  458999999999999999999999999998875 599999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+  +.....|..+.++|.++|++++
T Consensus       114 ~~G~--~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        114 KNGQ--VVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             ECCE--EEEEEcCCCCHHHHHHHHHHhC
Confidence            9886  4444448899999999998763

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.76  E-value=9.8e-18  Score=144.69  Aligned_cols=108  Identities=21%  Similarity=0.409  Sum_probs=89.6

Q ss_pred             CCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .+.+.+|++.++|.+.+... .+.+|||+||++||++|+.+.|.|.+|+++|++++|++||++++ .++.+|+|.++|||
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl  139 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL  139 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence            56889999988999998643 24699999999999999999999999999999999999999987 89999999999999


Q ss_pred             EEEeCCC--ceeeeec---CCccCHHHHHHHHHhh
Q 022923          177 RFYRGAH--GRVCSFS---CTNATIKKFKDALAKH  206 (290)
Q Consensus       177 ~~~~~G~--~~v~~~~---~g~~~~~~l~~~L~k~  206 (290)
                      ++|++|+  .++.++.   ....+.+.|..+|.++
T Consensus       140 llyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         140 LVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             EEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            9999998  1222222   1235677777777654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.75  E-value=1e-17  Score=129.56  Aligned_cols=98  Identities=20%  Similarity=0.449  Sum_probs=86.7

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      +.++|.+.+.  ++++++|+||++||++|+.+.+.++++++.+.   ++.++.+|++++..++++|+|.++|++++|++|
T Consensus         2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            3467888873  68999999999999999999999999999886   499999999999999999999999999999988


Q ss_pred             CceeeeecCCccCHHHHHHHHHhhC
Q 022923          183 HGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +. +..+. |..+.++|+.+|++++
T Consensus        80 ~~-~~~~~-g~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        80 KK-PVDYE-GGRDLEAIVEFVNEKS  102 (102)
T ss_pred             Cc-ceeec-CCCCHHHHHHHHHhcC
Confidence            73 55555 7889999999999863

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.75  E-value=1.3e-17  Score=140.83  Aligned_cols=84  Identities=17%  Similarity=0.333  Sum_probs=75.2

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccc----
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV----  172 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~----  172 (290)
                      ..+.+++ .++|++.+....+++++|+||++||++|+.+.|.++++++++.  +++|++||++++++++++|+|..    
T Consensus        28 ~~v~~l~-~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v  106 (152)
T cd02962          28 EHIKYFT-PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS  106 (152)
T ss_pred             CccEEcC-HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence            3566665 4789988866567899999999999999999999999999985  49999999999999999999998    


Q ss_pred             --cCceEEEeCCC
Q 022923          173 --LPFFRFYRGAH  183 (290)
Q Consensus       173 --~PT~~~~~~G~  183 (290)
                        +||+++|++|+
T Consensus       107 ~~~PT~ilf~~Gk  119 (152)
T cd02962         107 KQLPTIILFQGGK  119 (152)
T ss_pred             CCCCEEEEEECCE
Confidence              99999999997

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.75  E-value=8.9e-18  Score=133.44  Aligned_cols=102  Identities=13%  Similarity=0.268  Sum_probs=84.1

Q ss_pred             eeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-cHhHHH-hcCccccCc
Q 022923          101 MREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-HKSMCY-SLNVHVLPF  175 (290)
Q Consensus       101 v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-~~~l~~-~~~I~~~PT  175 (290)
                      +++++. ++|+..+. ...+++++|+||++||++|+.+.|.|.++++.+.  ++.++.||++. +..++. .|+|+++||
T Consensus         3 v~~~~~-~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           3 VVTLSR-AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             ceeccH-HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            445544 58888875 3467999999999999999999999999999885  48999999997 578887 499999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      +++|++|......|.++.++.+.|..||
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999887655666663348999998875

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.75  E-value=2e-17  Score=147.88  Aligned_cols=107  Identities=10%  Similarity=0.215  Sum_probs=92.7

Q ss_pred             CCeeEeCCHhHHHHHHHhc---CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccC
Q 022923           99 PNMREVASAQDLVESLWHA---GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP  174 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~---~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~P  174 (290)
                      ..++++ +.++|++.+...   .+++++|+|||+||++|+.+.|.|+++++++++ +.|+.||++++++++++|+|+++|
T Consensus        30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P  108 (224)
T PTZ00443         30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP  108 (224)
T ss_pred             CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence            346666 457899987532   368999999999999999999999999999975 899999999999999999999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |+++|++|+  +..+..|..+.++|.+|+.+...
T Consensus       109 Tl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        109 TLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             EEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHH
Confidence            999999886  66666678999999999988863

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.74  E-value=2.2e-17  Score=128.48  Aligned_cols=98  Identities=21%  Similarity=0.419  Sum_probs=82.6

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccc--cHhHHHhcCccccCc
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE--HKSMCYSLNVHVLPF  175 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~--~~~l~~~~~I~~~PT  175 (290)
                      +.++++ ++|.+.+.  .+++++|+||++||++|+.+.|.+.++++.+.   .+.++.+|+++  +..++++|+|+++||
T Consensus         2 ~~~l~~-~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt   78 (104)
T cd02997           2 VVHLTD-EDFRKFLK--KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT   78 (104)
T ss_pred             eEEech-HhHHHHHh--hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccE
Confidence            445544 58888874  46799999999999999999999999998874   38899999998  999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      +++|++|+ .+..+. |..+.+++.+||
T Consensus        79 ~~~~~~g~-~~~~~~-g~~~~~~l~~~l  104 (104)
T cd02997          79 FKYFENGK-FVEKYE-GERTAEDIIEFM  104 (104)
T ss_pred             EEEEeCCC-eeEEeC-CCCCHHHHHhhC
Confidence            99999987 444444 888999988774

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR01068 thioredoxin thioredoxin

Probab=99.74  E-value=4e-17  Score=125.58  Aligned_cols=98  Identities=23%  Similarity=0.464  Sum_probs=85.1

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCce
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR  185 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~  185 (290)
                      .++|.+.+.. .+++++|+||++||++|+.+.+.+.++++.++ ++.|+.||++++..++++|+|.++||+++|++|+  
T Consensus         3 ~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~--   79 (101)
T TIGR01068         3 DANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK--   79 (101)
T ss_pred             HHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc--
Confidence            4678887753 46799999999999999999999999998886 5999999999999999999999999999998887  


Q ss_pred             eeeecCCccCHHHHHHHHHhhC
Q 022923          186 VCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       186 v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ......|..+.+++.++|++++
T Consensus        80 ~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        80 EVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             EeeeecCCCCHHHHHHHHHhhC
Confidence            3334447788999999998753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.73  E-value=2e-17  Score=130.05  Aligned_cols=93  Identities=17%  Similarity=0.348  Sum_probs=79.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++|++.   .++++++|+||++||++|+.+.|.|+++++.+.    ++.++.+|+++++.++++|+|.++||+++|++|.
T Consensus         7 ~~~~~~---~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~   83 (104)
T cd03000           7 DSFKDV---RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL   83 (104)
T ss_pred             hhhhhh---ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC
Confidence            556653   257899999999999999999999999999873    3899999999999999999999999999997664


Q ss_pred             ceeeeecCCccCHHHHHHHHHhh
Q 022923          184 GRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                        ...+. |..+.++|.+++++.
T Consensus        84 --~~~~~-G~~~~~~l~~~~~~~  103 (104)
T cd03000          84 --AYNYR-GPRTKDDIVEFANRV  103 (104)
T ss_pred             --ceeec-CCCCHHHHHHHHHhh
Confidence              44444 789999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.73  E-value=3.2e-17  Score=127.30  Aligned_cols=98  Identities=23%  Similarity=0.421  Sum_probs=82.0

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC---cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~---v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+++ .++|.+.+.. .+++++|+||++||++|+.+.|.+.++++.+.+   +.|+++|++++ +++..+++.++||+++
T Consensus         3 ~~l~-~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           3 KVVV-GKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF   79 (104)
T ss_pred             EEEc-hhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence            3444 4688888764 468999999999999999999999999998754   99999999987 6889999999999999


Q ss_pred             EeCCC-ceeeeecCCccCHHHHHHHH
Q 022923          179 YRGAH-GRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       179 ~~~G~-~~v~~~~~g~~~~~~l~~~L  203 (290)
                      |++|+ .....+. |..+.++|.+||
T Consensus        80 ~~~~~~~~~~~~~-g~~~~~~l~~fi  104 (104)
T cd02995          80 FPAGDKSNPIKYE-GDRTLEDLIKFI  104 (104)
T ss_pred             EcCCCcCCceEcc-CCcCHHHHHhhC
Confidence            99886 3344444 889999998875

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.73  E-value=2.1e-17  Score=129.74  Aligned_cols=95  Identities=23%  Similarity=0.267  Sum_probs=77.7

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEEeccc----cHhHHHhcCccccCceEEE
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEE----HKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~d~----~~~l~~~~~I~~~PT~~~~  179 (290)
                      ++|.+.+  .++++++|+||++||++|+.+.+.+   .++++.+. ++.++.||+++    ..+++++|+|.++||++||
T Consensus         2 ~~~~~~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           2 AALAQAL--AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHHH--HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            4567776  4689999999999999999999988   57887776 79999999987    6789999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHH
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALA  204 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~  204 (290)
                      +.|+++......|..+.++|.++|+
T Consensus        80 ~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          80 GPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCCcccccccCHHHHHHHhC
Confidence            8422234444448899999988863

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.72  E-value=3.1e-17  Score=131.08  Aligned_cols=91  Identities=14%  Similarity=0.119  Sum_probs=78.9

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCC--ChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~W--C~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      +..+|++.+  +.+..++|+||++|  |++|+.+.|.+++++++|++ +.|++||++++++++.+|+|+++||+++|++|
T Consensus        16 ~~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG   93 (111)
T cd02965          16 DAATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG   93 (111)
T ss_pred             ccccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence            346788777  56889999999997  99999999999999999987 78999999999999999999999999999999


Q ss_pred             CceeeeecCCccCHHHHH
Q 022923          183 HGRVCSFSCTNATIKKFK  200 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~  200 (290)
                      + .+.. ..|..+.+++.
T Consensus        94 k-~v~~-~~G~~~~~e~~  109 (111)
T cd02965          94 R-YVGV-LAGIRDWDEYV  109 (111)
T ss_pred             E-EEEE-EeCccCHHHHh
Confidence            7 3444 34777777764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.72  E-value=4e-17  Score=126.80  Aligned_cols=100  Identities=22%  Similarity=0.431  Sum_probs=83.2

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccc-cHhHHHhcCccccCce
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE-HKSMCYSLNVHVLPFF  176 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~-~~~l~~~~~I~~~PT~  176 (290)
                      +.++++ ++|.+.+. +.+++++|+||++||++|+.+.|.+.++++.+.   ++.++.+|+++ ++.++++|+|.++|++
T Consensus         2 ~~~l~~-~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~   79 (105)
T cd02998           2 VVELTD-SNFDKVVG-DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL   79 (105)
T ss_pred             eEEcch-hcHHHHhc-CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence            345544 67888664 356799999999999999999999999999875   49999999999 9999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      ++|++|+.....+ .|..+.++|.+||
T Consensus        80 ~~~~~~~~~~~~~-~g~~~~~~l~~~i  105 (105)
T cd02998          80 KFFPKGSTEPVKY-EGGRDLEDLVKFV  105 (105)
T ss_pred             EEEeCCCCCcccc-CCccCHHHHHhhC
Confidence            9998885334444 4779999998874

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.71  E-value=9.2e-17  Score=134.01  Aligned_cols=98  Identities=17%  Similarity=0.276  Sum_probs=81.8

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEecccc--HhHHHhcCccccCceEEEe-CCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH--KSMCYSLNVHVLPFFRFYR-GAH  183 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~--~~l~~~~~I~~~PT~~~~~-~G~  183 (290)
                      .+|.+.+  ..++++||+|||+||++|+.+.|.+.++++.|. ++.|+.||++..  ..++++|+|.++||++||+ +|+
T Consensus        11 ~~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~   88 (142)
T cd02950          11 TPPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN   88 (142)
T ss_pred             CCHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence            4566665  468999999999999999999999999999985 478888888754  5889999999999999995 565


Q ss_pred             ceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          184 GRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                        +.....|..+.++|.++|++++..
T Consensus        89 --~v~~~~G~~~~~~l~~~l~~l~~~  112 (142)
T cd02950          89 --EEGQSIGLQPKQVLAQNLDALVAG  112 (142)
T ss_pred             --EEEEEeCCCCHHHHHHHHHHHHcC
Confidence              555555888899999999988743

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.70  E-value=1.3e-16  Score=121.79  Aligned_cols=95  Identities=22%  Similarity=0.443  Sum_probs=80.9

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      +.++|.+.+.  ++++++|+||++||++|+.+.+.+.++++.+   .++.|+.+|++++..++++|+|.++||+++|+++
T Consensus         4 ~~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           4 TDDNFDELVK--DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             cHHHHHHHHh--CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            3468888884  4559999999999999999999999999988   5699999999999999999999999999999888


Q ss_pred             CceeeeecCCccCHHHHHHHH
Q 022923          183 HGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      +.....+. |..+.+++.+|+
T Consensus        82 ~~~~~~~~-g~~~~~~i~~~~  101 (101)
T cd02961          82 SKEPVKYE-GPRTLESLVEFI  101 (101)
T ss_pred             CcccccCC-CCcCHHHHHhhC
Confidence            42444554 677888888764

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=6.1e-17  Score=157.72  Aligned_cols=105  Identities=21%  Similarity=0.429  Sum_probs=92.1

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC----CCcEEEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .+.+++ .++|.+.+  ..+..++|.||||||+||+++.|.+++.++.+    +.+.+++|||+++.++|.+|+|++|||
T Consensus        26 ~Vl~Lt-~dnf~~~i--~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT  102 (493)
T KOG0190|consen   26 DVLVLT-KDNFKETI--NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT  102 (493)
T ss_pred             ceEEEe-cccHHHHh--ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence            445554 47899999  67899999999999999999999999998876    359999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +.+|+||.. ...|. |+++.+.+..||.+..+.
T Consensus       103 lkiFrnG~~-~~~Y~-G~r~adgIv~wl~kq~gP  134 (493)
T KOG0190|consen  103 LKIFRNGRS-AQDYN-GPREADGIVKWLKKQSGP  134 (493)
T ss_pred             EEEEecCCc-ceecc-CcccHHHHHHHHHhccCC
Confidence            999999982 35555 899999999999999744

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.69  E-value=3e-16  Score=121.87  Aligned_cols=92  Identities=18%  Similarity=0.433  Sum_probs=79.0

Q ss_pred             HHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeee
Q 022923          110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS  188 (290)
Q Consensus       110 f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~  188 (290)
                      +...+.. .+++++|+||++||+.|+.+.|.+++++++++ ++.++.+|++++++++++|+|.++||+++|++|+ .+ .
T Consensus         5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~-~v-~   81 (97)
T cd02949           5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE-LV-K   81 (97)
T ss_pred             HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe-EE-E
Confidence            3444443 78999999999999999999999999999986 5999999999999999999999999999999876 34 4


Q ss_pred             ecCCccCHHHHHHHHH
Q 022923          189 FSCTNATIKKFKDALA  204 (290)
Q Consensus       189 ~~~g~~~~~~l~~~L~  204 (290)
                      ...|..+.++|.++|+
T Consensus        82 ~~~g~~~~~~~~~~l~   97 (97)
T cd02949          82 EISGVKMKSEYREFIE   97 (97)
T ss_pred             EEeCCccHHHHHHhhC
Confidence            4447888999988863

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.68  E-value=2.5e-16  Score=126.42  Aligned_cols=95  Identities=14%  Similarity=0.199  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCce-eee
Q 022923          110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR-VCS  188 (290)
Q Consensus       110 f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~-v~~  188 (290)
                      |.+.+  .++..++|+||++||++|+.+.|.++++++.++.+.|..||++++++++++|+|.++||+++|++|+.. ...
T Consensus        15 ~~~~l--~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~   92 (113)
T cd02975          15 FFKEM--KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR   92 (113)
T ss_pred             HHHHh--CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence            55555  457789999999999999999999999999988899999999999999999999999999999987511 113


Q ss_pred             ecCCccCHHHHHHHHHhhC
Q 022923          189 FSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       189 ~~~g~~~~~~l~~~L~k~~  207 (290)
                      +. |..+..+|.++|+..+
T Consensus        93 ~~-G~~~~~el~~~i~~i~  110 (113)
T cd02975          93 YY-GLPAGYEFASLIEDIV  110 (113)
T ss_pred             EE-ecCchHHHHHHHHHHH
Confidence            33 6777888888888764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.68  E-value=4.1e-16  Score=152.23  Aligned_cols=106  Identities=14%  Similarity=0.261  Sum_probs=89.2

Q ss_pred             CeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccH-hHH-HhcCccccC
Q 022923          100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK-SMC-YSLNVHVLP  174 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~-~l~-~~~~I~~~P  174 (290)
                      .+++++. ++|++.+. ...+++|||+|||+||++|+.+.|.|++++++|.+  +.|+.||+|.+. .++ ++|+|.++|
T Consensus       352 ~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P  430 (463)
T TIGR00424       352 NVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP  430 (463)
T ss_pred             CeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence            5556555 58999885 45789999999999999999999999999999853  899999999754 454 789999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      ||+||++|+.....|..|.++.+.|..||+..
T Consensus       431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            99999999755666765679999999999853

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.68  E-value=3.8e-16  Score=152.38  Aligned_cols=106  Identities=14%  Similarity=0.260  Sum_probs=91.0

Q ss_pred             CeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc-ccHhHHH-hcCccccC
Q 022923          100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE-EHKSMCY-SLNVHVLP  174 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d-~~~~l~~-~~~I~~~P  174 (290)
                      .+++++. ++|++.+. ...++++||+|||+||++|+.|.|.|++++++|.  ++.|++||++ .+..+++ +|+|+++|
T Consensus       346 ~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P  424 (457)
T PLN02309        346 NVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP  424 (457)
T ss_pred             CcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence            5555544 68888875 4578999999999999999999999999999985  4999999999 8888886 69999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      ||+||++|......|..+.++.+.|..||++.
T Consensus       425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            99999988756667765679999999999874

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.67  E-value=1.1e-16  Score=145.68  Aligned_cols=125  Identities=17%  Similarity=0.328  Sum_probs=100.0

Q ss_pred             HHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          109 DLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       109 ~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++++... +..+..++|+||||||+|||++.|.|+++.-++.+    +++.++|++..+.++.+|+|++|||+.||++|.
T Consensus        32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~  111 (468)
T KOG4277|consen   32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH  111 (468)
T ss_pred             hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe
Confidence            4444443 34678999999999999999999999999877754    899999999999999999999999999999986


Q ss_pred             ceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHhCCCCccccCC
Q 022923          184 GRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTP  239 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~~~~~~~~~~~  239 (290)
                        ...|. |+++.+.+++|-.+..+.   +-........+.+.+.+...+.|.+..
T Consensus       112 --a~dYR-G~R~Kd~iieFAhR~a~a---iI~pi~enQ~~fehlq~Rhq~ffVf~G  161 (468)
T KOG4277|consen  112 --AIDYR-GGREKDAIIEFAHRCAAA---IIEPINENQIEFEHLQARHQPFFVFFG  161 (468)
T ss_pred             --eeecC-CCccHHHHHHHHHhcccc---eeeecChhHHHHHHHhhccCceEEEEe
Confidence              77777 999999999999887643   111122234555677777777777655

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.66  E-value=4.7e-16  Score=125.33  Aligned_cols=96  Identities=13%  Similarity=0.197  Sum_probs=81.0

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeC--CCCh---HHHHHHHHHHHHHHHCCCcEEEEEec-----cccHhHHHhcCcc--c
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFS--PGCG---GCKALHPKICQLAEMNPDVQFLQVNY-----EEHKSMCYSLNVH--V  172 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA--~WC~---~Ck~~~p~l~~la~~~~~v~~~~Vd~-----d~~~~l~~~~~I~--~  172 (290)
                      .+.++|++.+  .+++.+||.|||  |||+   +|+.+.|.+.+.+.   ++.+++|||     .++.+||++|+|+  +
T Consensus         6 L~~~nF~~~v--~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~~g   80 (116)
T cd03007           6 LDTVTFYKVI--PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDKES   80 (116)
T ss_pred             CChhhHHHHH--hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCcCC
Confidence            3557899988  567899999999  9999   89888888876654   389999999     4678999999999  9


Q ss_pred             cCceEEEeCCC-ceeeeecCCc-cCHHHHHHHHHhh
Q 022923          173 LPFFRFYRGAH-GRVCSFSCTN-ATIKKFKDALAKH  206 (290)
Q Consensus       173 ~PT~~~~~~G~-~~v~~~~~g~-~~~~~l~~~L~k~  206 (290)
                      +||+.+|++|. .....|. |+ ++.+.|.+||.++
T Consensus        81 yPTl~lF~~g~~~~~~~Y~-G~~r~~~~lv~~v~~~  115 (116)
T cd03007          81 YPVIYLFHGGDFENPVPYS-GADVTVDALQRFLKGN  115 (116)
T ss_pred             CCEEEEEeCCCcCCCccCC-CCcccHHHHHHHHHhc
Confidence            99999999984 2345676 64 9999999999876

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.66  E-value=1e-15  Score=133.98  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=83.5

Q ss_pred             CCCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           97 LQPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ..+.+.+|+. ++|...+..+ .+.+|||+||++||++|+.+.|.|.+|+++|++++|++||++..   +.+|+|.++||
T Consensus        80 ~~G~v~eis~-~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPT  155 (192)
T cd02988          80 KFGEVYEISK-PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPT  155 (192)
T ss_pred             CCCeEEEeCH-HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCE
Confidence            4567888855 6787766543 34699999999999999999999999999999999999999864   68999999999


Q ss_pred             eEEEeCCC--ceeeeec-CC--ccCHHHHHHHHHhh
Q 022923          176 FRFYRGAH--GRVCSFS-CT--NATIKKFKDALAKH  206 (290)
Q Consensus       176 ~~~~~~G~--~~v~~~~-~g--~~~~~~l~~~L~k~  206 (290)
                      |++|++|+  .++.++. .|  ..+.+.|..+|.++
T Consensus       156 lliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~  191 (192)
T cd02988         156 ILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV  191 (192)
T ss_pred             EEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence            99999998  2222221 12  35677777777653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.65  E-value=1e-15  Score=124.10  Aligned_cols=97  Identities=13%  Similarity=0.278  Sum_probs=80.3

Q ss_pred             EeCCHhHHHHHHHhcCCCeEEEEEeC-------CCChHHHHHHHHHHHHHHHCC-CcEEEEEeccc-------cHhHHHh
Q 022923          103 EVASAQDLVESLWHAGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS  167 (290)
Q Consensus       103 ~I~s~~~f~~~l~~~~~k~vlV~FyA-------~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~-------~~~l~~~  167 (290)
                      .+.+.++|.+.+...++++|+|+|||       +||++|+.+.|.+++++++++ ++.|++||+++       +.++..+
T Consensus         5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~   84 (119)
T cd02952           5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD   84 (119)
T ss_pred             cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence            36778899999976568999999999       999999999999999999998 69999999976       4689999


Q ss_pred             cCcc-ccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          168 LNVH-VLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       168 ~~I~-~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      |+|. ++||+++|++|+ ++.+..+  .+.+.+..|
T Consensus        85 ~~I~~~iPT~~~~~~~~-~l~~~~c--~~~~~~~~~  117 (119)
T cd02952          85 PKLTTGVPTLLRWKTPQ-RLVEDEC--LQADLVEMF  117 (119)
T ss_pred             cCcccCCCEEEEEcCCc-eecchhh--cCHHHHHHh
Confidence            9999 999999998775 5554432  344444444

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.65  E-value=1.4e-15  Score=122.14  Aligned_cols=100  Identities=19%  Similarity=0.365  Sum_probs=76.7

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEecc--ccHhHHHhcCccccC
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYE--EHKSMCYSLNVHVLP  174 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d--~~~~l~~~~~I~~~P  174 (290)
                      ++++ +.++|.+.+.. .+++++|+||++||++|+.+.|.|+++++++.    .+.|+.+||+  ++.+++++|+|+++|
T Consensus         3 v~~l-~~~~f~~~i~~-~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P   80 (114)
T cd02992           3 VIVL-DAASFNSALLG-SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP   80 (114)
T ss_pred             eEEC-CHHhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence            3444 45688888865 45899999999999999999999999999764    3899999985  477899999999999


Q ss_pred             ceEEEeCCCcee---eeecCCccCHHHHHHH
Q 022923          175 FFRFYRGAHGRV---CSFSCTNATIKKFKDA  202 (290)
Q Consensus       175 T~~~~~~G~~~v---~~~~~g~~~~~~l~~~  202 (290)
                      |+++|++|+...   ..+.++.+..+.+++.
T Consensus        81 t~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (114)
T cd02992          81 TLRYFPPFSKEATDGLKQEGPERDVNELREA  111 (114)
T ss_pred             EEEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence            999999887211   1233233555555443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.64  E-value=2.3e-15  Score=145.93  Aligned_cols=121  Identities=20%  Similarity=0.414  Sum_probs=98.3

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG  181 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~  181 (290)
                      +.++|.+.+  ..+++++|+|||+||++|+.+.|.+.++++.+.    ++.|+.|||+++.++|++|+|.++||+++|++
T Consensus         7 ~~~~~~~~i--~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~   84 (462)
T TIGR01130         7 TKDNFDDFI--KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN   84 (462)
T ss_pred             CHHHHHHHH--hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence            457898888  457899999999999999999999999887653    49999999999999999999999999999999


Q ss_pred             CCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCC-cHHHHHHHHhCCCCc
Q 022923          182 AHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAANKDLS  234 (290)
Q Consensus       182 G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~-~~~e~~~l~~~~~~~  234 (290)
                      |+..+..+. |.++.+.|.+|+.++++.     +...+ +.++++.+....+..
T Consensus        85 g~~~~~~~~-g~~~~~~l~~~i~~~~~~-----~~~~i~~~~~~~~~~~~~~~~  132 (462)
T TIGR01130        85 GEDSVSDYN-GPRDADGIVKYMKKQSGP-----AVKEIETVADLEAFLADDDVV  132 (462)
T ss_pred             CccceeEec-CCCCHHHHHHHHHHhcCC-----CceeecCHHHHHHHHhcCCcE
Confidence            872245555 889999999999998743     33334 356666666665443

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.64  E-value=1.8e-15  Score=113.03  Aligned_cols=91  Identities=31%  Similarity=0.585  Sum_probs=78.9

Q ss_pred             HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeee
Q 022923          109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS  188 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~  188 (290)
                      +|.+.+.  .+++++|+||++||++|+.+.+.+.++.+.++++.|+.+|++.+..++++|+|.++||+++|++|+ .+..
T Consensus         2 ~~~~~~~--~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~   78 (93)
T cd02947           2 EFEELIK--SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR   78 (93)
T ss_pred             chHHHHh--cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence            4666663  348999999999999999999999999999888999999999999999999999999999999886 3444


Q ss_pred             ecCCccCHHHHHHHH
Q 022923          189 FSCTNATIKKFKDAL  203 (290)
Q Consensus       189 ~~~g~~~~~~l~~~L  203 (290)
                      + .|..+.++|.++|
T Consensus        79 ~-~g~~~~~~l~~~i   92 (93)
T cd02947          79 V-VGADPKEELEEFL   92 (93)
T ss_pred             E-ecCCCHHHHHHHh
Confidence            4 3777888888876

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.64  E-value=2.3e-15  Score=122.60  Aligned_cols=95  Identities=13%  Similarity=0.227  Sum_probs=75.5

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----------hHHHhcC----
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------SMCYSLN----  169 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----------~l~~~~~----  169 (290)
                      .+.++|.+.+  .+++.++|+||++||++|+.+.|.|.+++++ .++.|+.||++.+.           ++.++|+    
T Consensus        11 it~~~~~~~i--~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~   87 (122)
T TIGR01295        11 TTVVRALEAL--DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTS   87 (122)
T ss_pred             cCHHHHHHHH--HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCccc
Confidence            3456888888  4578899999999999999999999999998 56788999988542           5556665    


Q ss_pred             ccccCceEEEeCCCceeeeecCC-ccCHHHHHHHHH
Q 022923          170 VHVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDALA  204 (290)
Q Consensus       170 I~~~PT~~~~~~G~~~v~~~~~g-~~~~~~l~~~L~  204 (290)
                      |.++||+++|++|+ .+. ...| ..+.++|.+++.
T Consensus        88 i~~~PT~v~~k~Gk-~v~-~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        88 FMGTPTFVHITDGK-QVS-VRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCCCCEEEEEeCCe-EEE-EEeCCCCCHHHHHHHhh
Confidence            55699999999998 344 4435 567999998864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.63  E-value=2.4e-15  Score=121.83  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=78.7

Q ss_pred             hHHHHHHHhcCC-CeEEEEEeCCCChHHHHHHHHHH---HHHHHC-CCcEEEEEecccc-------------HhHHHhcC
Q 022923          108 QDLVESLWHAGD-KLVVVDFFSPGCGGCKALHPKIC---QLAEMN-PDVQFLQVNYEEH-------------KSMCYSLN  169 (290)
Q Consensus       108 ~~f~~~l~~~~~-k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~~-------------~~l~~~~~  169 (290)
                      +++.+..  ..+ ++++|+||++||++|+.+.+.+.   .+.+.+ .++.++.||++.+             ..++.+|+
T Consensus         4 ~~~~~a~--~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~   81 (125)
T cd02951           4 EDLAEAA--ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR   81 (125)
T ss_pred             HHHHHHH--HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence            4566666  457 99999999999999999999885   555555 3588999999864             68999999


Q ss_pred             ccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          170 VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       170 I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |.++||++||+++.+++.....|..+.++|.++|+..+.
T Consensus        82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            999999999987512344445588889999999988764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PTZ00062 glutaredoxin; Provisional

Probab=99.62  E-value=6e-15  Score=130.08  Aligned_cols=117  Identities=13%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  184 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~  184 (290)
                      .+.++|.+.+.. ..+.++++|||+||++|+.+.|.+.+|+++|+++.|++||.+        |+|.++|||+||++|+ 
T Consensus         4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~-   73 (204)
T PTZ00062          4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ-   73 (204)
T ss_pred             CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-
Confidence            466888888842 247799999999999999999999999999999999999977        9999999999999998 


Q ss_pred             eeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHhCCCCccccC
Q 022923          185 RVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYT  238 (290)
Q Consensus       185 ~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~~~~~~~~~~  238 (290)
                      .+..+  .+.++.++..++.++.....     .....+.++.+..++.+..-..
T Consensus        74 ~i~r~--~G~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~li~~~~Vvvf~K  120 (204)
T PTZ00062         74 LINSL--EGCNTSTLVSFIRGWAQKGS-----SEDTVEKIERLIRNHKILLFMK  120 (204)
T ss_pred             EEeee--eCCCHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCEEEEEc
Confidence            44444  37789999999999975411     1223455667777777664444

>PTZ00102 disulphide isomerase; Provisional

Probab=99.61  E-value=8.6e-15  Score=143.28  Aligned_cols=103  Identities=21%  Similarity=0.418  Sum_probs=88.8

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC----CCcEEEEEeccccHhHHHhcCccccCce
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      +..+ +.++|.+.+  .+++.++|+|||+||++|+++.|.+.++++.+    .++.|+.|||+++.++|++|+|.++||+
T Consensus        34 v~~l-~~~~f~~~i--~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~  110 (477)
T PTZ00102         34 VTVL-TDSTFDKFI--TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI  110 (477)
T ss_pred             cEEc-chhhHHHHH--hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence            4444 457888888  45789999999999999999999999988665    3599999999999999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ++|++|+ .+ .+. |.++.+.|.+|++++++.
T Consensus       111 ~~~~~g~-~~-~y~-g~~~~~~l~~~l~~~~~~  140 (477)
T PTZ00102        111 KFFNKGN-PV-NYS-GGRTADGIVSWIKKLTGP  140 (477)
T ss_pred             EEEECCc-eE-Eec-CCCCHHHHHHHHHHhhCC
Confidence            9999987 33 554 889999999999999754

>PTZ00102 disulphide isomerase; Provisional

Probab=99.60  E-value=5.9e-15  Score=144.43  Aligned_cols=106  Identities=21%  Similarity=0.420  Sum_probs=90.2

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      +..+. .++|++.+.. .+++|+|+|||+||++|+.+.|.++++++.+.   .+.++.+|++.+..++++|+|+++||++
T Consensus       359 v~~l~-~~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~  436 (477)
T PTZ00102        359 VKVVV-GNTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL  436 (477)
T ss_pred             eEEec-ccchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence            44444 4788888654 68999999999999999999999999998875   3899999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|++|+.....+. |.++.++|.++|+++...
T Consensus       437 ~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        437 FVKAGERTPIPYE-GERTVEGFKEFVNKHATN  467 (477)
T ss_pred             EEECCCcceeEec-CcCCHHHHHHHHHHcCCC
Confidence            9998873333454 889999999999999853

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.1e-15  Score=147.03  Aligned_cols=99  Identities=25%  Similarity=0.452  Sum_probs=85.1

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      -.++|++++.. .+|.|||.||||||+||+++.|.|++|+++|.   ++.++++|.+.|.  .....|+++|||++|+.|
T Consensus       372 Vgknfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag  448 (493)
T KOG0190|consen  372 VGKNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAG  448 (493)
T ss_pred             eecCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEecCC
Confidence            34678888764 78999999999999999999999999999985   4999999999887  456678889999999988


Q ss_pred             Cce-eeeecCCccCHHHHHHHHHhhCC
Q 022923          183 HGR-VCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       183 ~~~-v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ... ++.|. |.++.++|..||.++..
T Consensus       449 ~k~~pv~y~-g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  449 HKSNPVIYN-GDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             CCCCCcccC-CCcchHHHHhhhccCCC
Confidence            743 55554 89999999999999874

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.54  E-value=4.6e-14  Score=142.03  Aligned_cols=107  Identities=19%  Similarity=0.280  Sum_probs=89.4

Q ss_pred             CeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCCCcEEEEEeccc----cHhHHHhcCc
Q 022923          100 NMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYEE----HKSMCYSLNV  170 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~~v~~~~Vd~d~----~~~l~~~~~I  170 (290)
                      ...++.+.+++++.+..  .++|+|+|+|||+||++|+.+.+.+   .++.++++++.++++|+++    +.+++++|+|
T Consensus       453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v  532 (571)
T PRK00293        453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV  532 (571)
T ss_pred             CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence            56778899999998863  3579999999999999999999875   6788888899999999985    4688999999


Q ss_pred             cccCceEEEe-CCCcee-eeecCCccCHHHHHHHHHhhC
Q 022923          171 HVLPFFRFYR-GAHGRV-CSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       171 ~~~PT~~~~~-~G~~~v-~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .++||+++|+ +|+ .+ .....|..+.++|.++|++..
T Consensus       533 ~g~Pt~~~~~~~G~-~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        533 LGLPTILFFDAQGQ-EIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             CCCCEEEEECCCCC-CcccccccCCCCHHHHHHHHHHhc
Confidence            9999999997 565 32 233447889999999998864

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.53  E-value=4.8e-14  Score=109.72  Aligned_cols=88  Identities=13%  Similarity=0.204  Sum_probs=76.6

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCcc--ccCceEEEeCCCceeeeecCCccC
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVH--VLPFFRFYRGAHGRVCSFSCTNAT  195 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~--~~PT~~~~~~G~~~v~~~~~g~~~  195 (290)
                      ++++++.||++||++|+.+.|.+++++++|. .+.|+.||+++++.+++.|+|.  ++|++++++++++....+..+..+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~   91 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT   91 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence            6899999999999999999999999999995 4999999999999999999999  999999999843224444434458


Q ss_pred             HHHHHHHHHhh
Q 022923          196 IKKFKDALAKH  206 (290)
Q Consensus       196 ~~~l~~~L~k~  206 (290)
                      .++|.+||+++
T Consensus        92 ~~~l~~fi~~~  102 (103)
T cd02982          92 AESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.49  E-value=5.3e-14  Score=128.37  Aligned_cols=99  Identities=16%  Similarity=0.345  Sum_probs=85.7

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH----CC--CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG  181 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~----~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~  181 (290)
                      ++++.++  ..+.+|+|.|||+||...+.+.|.+++.++.    |+  .+.+++|||+.+..|+.+|.|..|||+.+|++
T Consensus         4 ~N~~~il--~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn   81 (375)
T KOG0912|consen    4 ENIDSIL--DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN   81 (375)
T ss_pred             ccHHHhh--ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence            5677777  4589999999999999999999999988875    44  39999999999999999999999999999999


Q ss_pred             CCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          182 AHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       182 G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |...-..|. |.++.+.|.+||++++.+
T Consensus        82 G~~~~rEYR-g~RsVeaL~efi~kq~s~  108 (375)
T KOG0912|consen   82 GEMMKREYR-GQRSVEALIEFIEKQLSD  108 (375)
T ss_pred             cchhhhhhc-cchhHHHHHHHHHHHhcc
Confidence            982222444 889999999999999854

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.48  E-value=5.9e-14  Score=113.40  Aligned_cols=90  Identities=23%  Similarity=0.314  Sum_probs=66.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccH-hHHHhcCccc--cCceEEEe-CCCceeee--e
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHK-SMCYSLNVHV--LPFFRFYR-GAHGRVCS--F  189 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~-~l~~~~~I~~--~PT~~~~~-~G~~~v~~--~  189 (290)
                      .++++|||+|||+||++|+.+.|.+.+....+ .+..|+.||++.+. .+...|++.+  +||++||. +|+ .+..  .
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk-~~~~~~~   95 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD-VHPEIIN   95 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC-Cchhhcc
Confidence            46899999999999999999999999876643 23566677776554 4567899987  99999996 666 2221  2


Q ss_pred             cCCccCHHHHHHHHHhhC
Q 022923          190 SCTNATIKKFKDALAKHT  207 (290)
Q Consensus       190 ~~g~~~~~~l~~~L~k~~  207 (290)
                      ..|..+.+.|.+.|....
T Consensus        96 ~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          96 KKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             CCCCccccccCCCHHHHH
Confidence            236777777776666553

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.46  E-value=1.3e-12  Score=116.02  Aligned_cols=89  Identities=16%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             CCCeEEEEEeC---CCChHHHHHHHHHHHHHHHCCCcE--EEEEeccccHhHHHhcCccccCceEEEeCCCceee-eecC
Q 022923          118 GDKLVVVDFFS---PGCGGCKALHPKICQLAEMNPDVQ--FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC-SFSC  191 (290)
Q Consensus       118 ~~k~vlV~FyA---~WC~~Ck~~~p~l~~la~~~~~v~--~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~-~~~~  191 (290)
                      .+...++.|++   +||++|+.+.|.+++++++|+++.  ++.+|.+++++++++|+|.++||+++|++|+ .+. .+. 
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~-   95 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYT-   95 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEe-
Confidence            34455666888   999999999999999999997754  6666666999999999999999999999987 332 444 


Q ss_pred             CccCHHHHHHHHHhhCC
Q 022923          192 TNATIKKFKDALAKHTP  208 (290)
Q Consensus       192 g~~~~~~l~~~L~k~~~  208 (290)
                      |..+.+++.++|+.++.
T Consensus        96 G~~~~~~l~~~i~~~~~  112 (215)
T TIGR02187        96 GIPAGYEFAALIEDIVR  112 (215)
T ss_pred             ecCCHHHHHHHHHHHHH
Confidence            77888899999988853

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.46  E-value=5.6e-13  Score=99.42  Aligned_cols=79  Identities=20%  Similarity=0.287  Sum_probs=68.2

Q ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHH
Q 022923          122 VVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK  200 (290)
Q Consensus       122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~  200 (290)
                      .+..||++||++|+.+.|.++++++.++ ++.+..||++++++++++|+|.++||+++  +|+  . .+ .|..+.++|.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~-~~-~G~~~~~~l~   75 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--V-EF-IGAPTKEELV   75 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--E-EE-ecCCCHHHHH
Confidence            4678999999999999999999999885 48999999999999999999999999986  664  2 23 3778899999


Q ss_pred             HHHHhh
Q 022923          201 DALAKH  206 (290)
Q Consensus       201 ~~L~k~  206 (290)
                      ++|++.
T Consensus        76 ~~l~~~   81 (82)
T TIGR00411        76 EAIKKR   81 (82)
T ss_pred             HHHHhh
Confidence            998865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR02740 TraF-like TraF-like protein

Probab=99.45  E-value=1.2e-12  Score=120.46  Aligned_cols=92  Identities=12%  Similarity=0.204  Sum_probs=76.8

Q ss_pred             hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------cHhHHHhcCccccCceEEEeCCCc
Q 022923          116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRGAHG  184 (290)
Q Consensus       116 ~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------~~~l~~~~~I~~~PT~~~~~~G~~  184 (290)
                      .-.++++||+||++||++|+.+.|.+.+++++|+ +.++.|++|.           +..++++|+|.++||+++++++++
T Consensus       163 ~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~  241 (271)
T TIGR02740       163 DLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN  241 (271)
T ss_pred             HhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence            3468999999999999999999999999999985 6777777764           357899999999999999987333


Q ss_pred             eeeeecCCccCHHHHHHHHHhhCC
Q 022923          185 RVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       185 ~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ++.....|..+.++|.+.|.....
T Consensus       242 ~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       242 QFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHhc
Confidence            565555688999999999987764

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.44  E-value=4.1e-13  Score=130.15  Aligned_cols=100  Identities=25%  Similarity=0.438  Sum_probs=83.7

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG  181 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~  181 (290)
                      +.++|.+.+.. .++++||+||++||++|+.+.|.++++++.+.    ++.|+.+|++.+. +.. ++|.++||+++|++
T Consensus       352 ~~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~  428 (462)
T TIGR01130       352 VGKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPA  428 (462)
T ss_pred             eCcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeC
Confidence            34678887754 58999999999999999999999999999885    4899999999875 344 99999999999998


Q ss_pred             CCc-eeeeecCCccCHHHHHHHHHhhCCC
Q 022923          182 AHG-RVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       182 G~~-~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |+. ....+. |..+.+.|.++|+++...
T Consensus       429 ~~~~~~~~~~-g~~~~~~l~~~l~~~~~~  456 (462)
T TIGR01130       429 GKKSEPVPYD-GDRTLEDFSKFIAKHATF  456 (462)
T ss_pred             CCCcCceEec-CcCCHHHHHHHHHhcCCC
Confidence            873 234454 789999999999998743

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PHA02125 thioredoxin-like protein

Probab=99.44  E-value=7.1e-13  Score=98.53  Aligned_cols=72  Identities=17%  Similarity=0.383  Sum_probs=57.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      +++||++||++|+.+.|.++++.     +.+++||.+++.+++++|+|.++||++   +|+ .+..+.+...+..+|++.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l~~~   72 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAELKEK   72 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHHHHH
Confidence            78999999999999999998763     578999999999999999999999987   454 344444234566777665


Q ss_pred             H
Q 022923          203 L  203 (290)
Q Consensus       203 L  203 (290)
                      |
T Consensus        73 ~   73 (75)
T PHA02125         73 L   73 (75)
T ss_pred             h
Confidence            4

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.43  E-value=1.4e-12  Score=110.29  Aligned_cols=88  Identities=9%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc------------HhHH-Hhc---CccccCceEEEeC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH------------KSMC-YSL---NVHVLPFFRFYRG  181 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~------------~~l~-~~~---~I~~~PT~~~~~~  181 (290)
                      .++..+|+|||+||++|+++.|.+++++++| ++.++.|++|+.            .... ..|   +|.++||+++++.
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            4667899999999999999999999999998 466777776642            2333 345   8999999999965


Q ss_pred             CCceeeeecCCccCHHHHHHHHHhh
Q 022923          182 AHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       182 G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      .++.+.....|..+.+++.+.|++.
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHHh
Confidence            4334454556889999999988765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.40  E-value=2e-12  Score=114.81  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=74.3

Q ss_pred             HHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeec
Q 022923          111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS  190 (290)
Q Consensus       111 ~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~  190 (290)
                      .+.+....+..+++.||++||++|+.+.+.+++++.+++++.+..+|.+++++++++|+|.++||++++++|. +   +.
T Consensus       125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-~---~~  200 (215)
T TIGR02187       125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-E---FV  200 (215)
T ss_pred             HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-E---EE
Confidence            3333332344455559999999999999999999999889999999999999999999999999999997764 2   33


Q ss_pred             CCccCHHHHHHHHHh
Q 022923          191 CTNATIKKFKDALAK  205 (290)
Q Consensus       191 ~g~~~~~~l~~~L~k  205 (290)
                       |....++|.++|.+
T Consensus       201 -G~~~~~~l~~~l~~  214 (215)
T TIGR02187       201 -GAYPEEQFLEYILS  214 (215)
T ss_pred             -CCCCHHHHHHHHHh
Confidence             77888999998864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.35  E-value=8e-13  Score=130.38  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=86.5

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHCCCcEEEEEecccc----HhHHHhcCccccC
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLP  174 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~P  174 (290)
                      +.+++..++++.+.++.+|+|+|||||+||..||.+++..-   +...+.+|++++++|++++    .++.++|++-++|
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P  536 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP  536 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence            66777779999998777789999999999999999999865   6666788999999999864    4678999999999


Q ss_pred             ceEEEe-CCCceeeeecCCccCHHHHHHHHHhh
Q 022923          175 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       175 T~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      ++++|. +|+ +... ..|..+.+.|.+++++.
T Consensus       537 ~~~ff~~~g~-e~~~-l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         537 TYLFFGPQGS-EPEI-LTGFLTADAFLEHLERA  567 (569)
T ss_pred             EEEEECCCCC-cCcC-CcceecHHHHHHHHHHh
Confidence            999998 454 3333 44889999999999875

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.6e-12  Score=123.38  Aligned_cols=98  Identities=24%  Similarity=0.480  Sum_probs=85.3

Q ss_pred             HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +|...+. ..+++++|+||++||++|+.+.|.|.+++..+.+ +.+..|||+++.++|++|+|.++||+.+|..| ..+.
T Consensus        38 ~~~~~~~-~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~  115 (383)
T KOG0191|consen   38 SFFDFLL-KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPI  115 (383)
T ss_pred             ccHHHhh-ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-Ccee
Confidence            3344443 4688999999999999999999999999998876 89999999999999999999999999999998 3577


Q ss_pred             eecCCccCHHHHHHHHHhhCCC
Q 022923          188 SFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      .+. +..+.+.+.+++.+.+..
T Consensus       116 ~~~-~~~~~~~~~~~~~~~~~~  136 (383)
T KOG0191|consen  116 DYS-GPRNAESLAEFLIKELEP  136 (383)
T ss_pred             ecc-CcccHHHHHHHHHHhhcc
Confidence            776 689999999999887743

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.33  E-value=1.2e-11  Score=107.42  Aligned_cols=86  Identities=15%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----------------------hHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------------------SMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----------------------~l~~~~~I~~~P  174 (290)
                      .+++++|+||++||++|+.+.|.+.++.++  ++.++.|+.+++.                       .+.+.|+|.++|
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P  144 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  144 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence            689999999999999999999999999764  6888888865422                       245578999999


Q ss_pred             ceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +.++++ +|+  +.....|..+.+++.+.|+.++
T Consensus       145 ~t~vid~~G~--i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        145 ETFLIDGNGI--IRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             eEEEECCCce--EEEEEecCCCHHHHHHHHHHHH
Confidence            877774 554  6655668889988888888765

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.32  E-value=1.2e-11  Score=100.95  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHH-H--HHHHH-CCCcEEEEEeccccHhHHHh--------cCccccCc
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI-C--QLAEM-NPDVQFLQVNYEEHKSMCYS--------LNVHVLPF  175 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l-~--~la~~-~~~v~~~~Vd~d~~~~l~~~--------~~I~~~PT  175 (290)
                      +.+....  .++|+|+|+||++||++|+.|.+.. .  ++.+. +.++.+++||.++++++.++        |++.++||
T Consensus         6 eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt   83 (124)
T cd02955           6 EAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL   83 (124)
T ss_pred             HHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence            4454444  5799999999999999999998743 2  56665 35799999999988877653        58999999


Q ss_pred             eEEEeCCC
Q 022923          176 FRFYRGAH  183 (290)
Q Consensus       176 ~~~~~~G~  183 (290)
                      ++|+...+
T Consensus        84 ~vfl~~~G   91 (124)
T cd02955          84 NVFLTPDL   91 (124)
T ss_pred             EEEECCCC
Confidence            99996543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.31  E-value=3.9e-12  Score=100.48  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHH---HHHC-CCcEEEEEecccc--------------------HhHHHhcCccc
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQL---AEMN-PDVQFLQVNYEEH--------------------KSMCYSLNVHV  172 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~l---a~~~-~~v~~~~Vd~d~~--------------------~~l~~~~~I~~  172 (290)
                      .++++++|+||++||++|+.+.+.+.+.   ...+ .++.++.++++..                    .++.++|+|.+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            4689999999999999999999999864   3333 2588888887643                    35889999999


Q ss_pred             cCceEEEe-CCCceeeeecCCccCHHHHHHHH
Q 022923          173 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       173 ~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      +||+++++ +|+  +.....|..+.++|.++|
T Consensus        83 tPt~~~~d~~G~--~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGK--IVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSC--EEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCC--EEEEecCCCCHHHHHhhC
Confidence            99999996 454  443344889999998875

...

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.31  E-value=1.3e-11  Score=122.33  Aligned_cols=88  Identities=15%  Similarity=0.223  Sum_probs=72.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEe----------------------------ccccHhHHH
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVN----------------------------YEEHKSMCY  166 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd----------------------------~d~~~~l~~  166 (290)
                      +++|+|||+|||+||++|+.+.|.+++++++++  ++.|+.|+                            +|.+..+++
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak  133 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ  133 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence            368999999999999999999999999999885  56665553                            345667899


Q ss_pred             hcCccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          167 SLNVHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      .|+|.++||++++ ++|+  +.....|..+.++|+++|+..
T Consensus       134 ~fgV~giPTt~IIDkdGk--IV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        134 SLNISVYPSWAIIGKDGD--VQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             HcCCCCcCeEEEEcCCCe--EEEEEeCCCCHHHHHHHHHHh
Confidence            9999999999776 4554  666666889999999999843

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.30  E-value=1.2e-11  Score=92.22  Aligned_cols=72  Identities=14%  Similarity=0.259  Sum_probs=56.8

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCC-ccCHHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFK  200 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g-~~~~~~l~  200 (290)
                      .|+||++||++|+.+.|.+++++++++. +.|++||   +.+.+.+|+|.++||+++  ||+  .. +. | ..+.+++.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~--~~-~~-G~~~~~~~l~   72 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE--LV-IM-GKIPSKEEIK   72 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE--EE-EE-eccCCHHHHH
Confidence            3889999999999999999999999864 7888877   234478899999999999  775  22 33 3 34557777


Q ss_pred             HHH
Q 022923          201 DAL  203 (290)
Q Consensus       201 ~~L  203 (290)
                      ++|
T Consensus        73 ~~l   75 (76)
T TIGR00412        73 EIL   75 (76)
T ss_pred             HHh
Confidence            665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.28  E-value=1e-11  Score=89.62  Aligned_cols=59  Identities=19%  Similarity=0.350  Sum_probs=54.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.||++||++|+.+.+.++++++.++++.|..+|++++++++++|+|.++||+++  +|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~   61 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK   61 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence            67899999999999999999999988889999999999999999999999999865  554

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.28  E-value=2.8e-11  Score=103.78  Aligned_cols=86  Identities=16%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-----------------------ccHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------------------EHKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------------------~~~~l~~~~~I~~~P  174 (290)
                      ++++++|+||++||++|+.+.|.++++.++  ++.++.|+.+                       .+..+.+.|++.++|
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P  139 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence            589999999999999999999999999765  4666666642                       334567789999999


Q ss_pred             ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +.+++ ++|+  +.....|..+.+++.+.|++++
T Consensus       140 ~~~~id~~G~--i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       140 ETFLVDGNGV--ILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             eEEEEcCCce--EEEEEeccCCHHHHHHHHHHHh
Confidence            76666 4554  5555557889999999998875

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.27  E-value=2.2e-11  Score=93.44  Aligned_cols=65  Identities=23%  Similarity=0.401  Sum_probs=54.1

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEecccc-------------------------HhHHHhcCc
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH-------------------------KSMCYSLNV  170 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~-------------------------~~l~~~~~I  170 (290)
                      +|+++|+||++||++|+...|.+.++.++|+   ++.|+.|++|+.                         ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            6899999999999999999999999999998   689999887742                         347888999


Q ss_pred             cccCceEEEeCCC
Q 022923          171 HVLPFFRFYRGAH  183 (290)
Q Consensus       171 ~~~PT~~~~~~G~  183 (290)
                      .++|++++++.++
T Consensus        81 ~~iP~~~lld~~G   93 (95)
T PF13905_consen   81 NGIPTLVLLDPDG   93 (95)
T ss_dssp             TSSSEEEEEETTS
T ss_pred             CcCCEEEEECCCC
Confidence            9999999997543

...

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.27  E-value=3.3e-11  Score=97.51  Aligned_cols=79  Identities=18%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec-----------------------cccHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~-----------------------d~~~~l~~~~~I~~~P  174 (290)
                      .+++++|+||++||++|+.+.|.++++.+.+ ++.++.|+.                       |.+..+++.|+|.++|
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P  102 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP  102 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence            5789999999999999999999999999887 477776663                       4456788899999999


Q ss_pred             ceEEE-eCCCceeeeecCCccCHHHH
Q 022923          175 FFRFY-RGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       175 T~~~~-~~G~~~v~~~~~g~~~~~~l  199 (290)
                      +.+++ ++|+  +.....|..+.+.|
T Consensus       103 ~~~~ld~~G~--v~~~~~G~~~~~~~  126 (127)
T cd03010         103 ETFLIDGDGI--IRYKHVGPLTPEVW  126 (127)
T ss_pred             eEEEECCCce--EEEEEeccCChHhc
Confidence            76666 4554  55444466665543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.25  E-value=2.7e-11  Score=101.61  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=56.5

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---------CcEEEEEecccc-------------------------Hh
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEH-------------------------KS  163 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---------~v~~~~Vd~d~~-------------------------~~  163 (290)
                      ++|+|+|+|||+||++|+.+.|.|.++.+++.         ++.++.|+.|++                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            68999999999999999999999999876432         488888887632                         24


Q ss_pred             HHHhcCccccCceEEEeCCCceeeee
Q 022923          164 MCYSLNVHVLPFFRFYRGAHGRVCSF  189 (290)
Q Consensus       164 l~~~~~I~~~PT~~~~~~G~~~v~~~  189 (290)
                      ++++|+|.++||+++++.. |++...
T Consensus       104 l~~~y~v~~iPt~vlId~~-G~Vv~~  128 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPD-GDVLAA  128 (146)
T ss_pred             HHHHcCCCCCCEEEEECCC-CcEEee
Confidence            7788999999999999633 346543

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.25  E-value=6.7e-11  Score=100.34  Aligned_cols=88  Identities=20%  Similarity=0.291  Sum_probs=73.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccc----------------------cHhHHHhcCcccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------HKSMCYSLNVHVL  173 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~----------------------~~~l~~~~~I~~~  173 (290)
                      .+++++|+||++||++|+...+.+.++.+++++  +.++.|+++.                      +..+++.|+|.++
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            578999999999999999999999999998864  8888888753                      4577899999999


Q ss_pred             CceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          174 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       174 PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      |++++++.++ ++.....|..+.+++.+++++.
T Consensus       140 P~~~lid~~g-~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        140 PTTFLIDKDG-KVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CeEEEECCCC-cEEEEEeCCCCHHHHHHHHHHh
Confidence            9998886443 4655555889999999998865

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.24  E-value=2.7e-11  Score=98.59  Aligned_cols=66  Identities=15%  Similarity=0.361  Sum_probs=54.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEecccc------------------------HhHHHhcC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH------------------------KSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~------------------------~~l~~~~~  169 (290)
                      .++++||+||++||++|+.+.|.+.++.+++.    ++.++.|++|..                        ..++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            57899999999999999999999998887753    577777776633                        35788999


Q ss_pred             ccccCceEEEe-CCC
Q 022923          170 VHVLPFFRFYR-GAH  183 (290)
Q Consensus       170 I~~~PT~~~~~-~G~  183 (290)
                      |.++|++++++ +|+
T Consensus        97 v~~~P~~~lid~~G~  111 (131)
T cd03009          97 IEGIPTLIILDADGE  111 (131)
T ss_pred             CCCCCEEEEECCCCC
Confidence            99999999996 444

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.22  E-value=1.3e-10  Score=89.52  Aligned_cols=77  Identities=10%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHH
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK  197 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~  197 (290)
                      .+..-+..|+++||++|..+.+.++++++.++++.+..+|.++.++++++|+|.++||+++  ||+  ... . |..+.+
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~--~~~-~-G~~~~~   84 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE--LFG-F-GRMTLE   84 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE--EEE-e-CCCCHH
Confidence            4566788899999999999999999999999999999999999999999999999999975  775  322 2 555655


Q ss_pred             HHH
Q 022923          198 KFK  200 (290)
Q Consensus       198 ~l~  200 (290)
                      ++.
T Consensus        85 e~~   87 (89)
T cd03026          85 EIL   87 (89)
T ss_pred             HHh
Confidence            543

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.21  E-value=5.9e-11  Score=97.10  Aligned_cols=65  Identities=18%  Similarity=0.316  Sum_probs=54.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEecccc-------------------------HhHHHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH-------------------------KSMCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~-------------------------~~l~~~~  168 (290)
                      .+|+++|+||++||++|+.+.|.+.++.+++.    ++.++.|+++..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            58999999999999999999999999987764    477777777643                         2466779


Q ss_pred             CccccCceEEEeCC
Q 022923          169 NVHVLPFFRFYRGA  182 (290)
Q Consensus       169 ~I~~~PT~~~~~~G  182 (290)
                      +|.++||+++++.+
T Consensus        96 ~v~~iPt~~lid~~  109 (132)
T cd02964          96 KVEGIPTLVVLKPD  109 (132)
T ss_pred             CCCCCCEEEEECCC
Confidence            99999999999633

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=9.6e-11  Score=112.59  Aligned_cols=106  Identities=21%  Similarity=0.359  Sum_probs=89.6

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccccCceE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      +.+.+. ++|...+.. .+..++|.||+|||++|+.+.|.|++++..+   ..+.+..+|++.+..++.+++|+++||+.
T Consensus       146 v~~l~~-~~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~  223 (383)
T KOG0191|consen  146 VFELTK-DNFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK  223 (383)
T ss_pred             eEEccc-cchhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence            444444 566666554 5788999999999999999999999999877   35999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|.+|.. ...+..+.++.+.+..|+.+....
T Consensus       224 ~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~  254 (383)
T KOG0191|consen  224 LFPPGEE-DIYYYSGLRDSDSIVSFVEKKERR  254 (383)
T ss_pred             EecCCCc-ccccccccccHHHHHHHHHhhcCC
Confidence            9999884 345555889999999999988765

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=1.6e-11  Score=120.33  Aligned_cols=78  Identities=21%  Similarity=0.471  Sum_probs=67.5

Q ss_pred             eCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----cEEEEEecc--ccHhHHHhcCccccCceE
Q 022923          104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYE--EHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       104 I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d--~~~~l~~~~~I~~~PT~~  177 (290)
                      ..+.++|...+..+ .+-.+|.||++|||+|+.+.|+++++++....    +.++.|||-  +|..+|+.|+|.++||+.
T Consensus        43 ~Ld~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlr  121 (606)
T KOG1731|consen   43 ELDVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLR  121 (606)
T ss_pred             EeehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceee
Confidence            34557899988653 46789999999999999999999999988643    899999995  688999999999999999


Q ss_pred             EEeCC
Q 022923          178 FYRGA  182 (290)
Q Consensus       178 ~~~~G  182 (290)
                      +|..+
T Consensus       122 yf~~~  126 (606)
T KOG1731|consen  122 YFPPD  126 (606)
T ss_pred             ecCCc
Confidence            99765

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.15  E-value=1.7e-10  Score=92.44  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=63.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEe---------------------ccccHhHHHhcCccccCce
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---------------------YEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd---------------------~d~~~~l~~~~~I~~~PT~  176 (290)
                      .+++++|+||++||++|+.+.|.+.++++++. +..+.+|                     .|.+.+++++|+|.++|++
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~   97 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI   97 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence            46899999999999999999999999988743 2222222                     1345679999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHH
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      +++++++  +.....|..+.++|.+.
T Consensus        98 ~vid~~g--i~~~~~g~~~~~~~~~~  121 (123)
T cd03011          98 VIVDPGG--IVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             EEEcCCC--eEEEEeccCCHHHHHhh
Confidence            9998776  44444477888887653

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.14  E-value=1.8e-10  Score=123.44  Aligned_cols=88  Identities=18%  Similarity=0.294  Sum_probs=72.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEec---------------------------cccHhHHHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNY---------------------------EEHKSMCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~---------------------------d~~~~l~~~~  168 (290)
                      ++|+|||+|||+||++|+...|.|+++.++|++  +.++.|..                           |.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            589999999999999999999999999999965  67777732                           2244677899


Q ss_pred             CccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          169 NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       169 ~I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|.++|++++|+ +|+  +.....|....+++.++|++.+
T Consensus       499 ~V~~iPt~ilid~~G~--iv~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGK--LIAQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             CCCccceEEEECCCCe--EEEEEecccCHHHHHHHHHHHH
Confidence            999999999994 665  5555558888899999988775

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.13  E-value=3.4e-10  Score=87.53  Aligned_cols=65  Identities=25%  Similarity=0.410  Sum_probs=58.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEecccc-----------------------HhHHHhcCccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEH-----------------------KSMCYSLNVHV  172 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~~-----------------------~~l~~~~~I~~  172 (290)
                      .+++++|+||++||++|+...+.+.++.+++  +++.++.|+++..                       ..+.+.|++.+
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            4789999999999999999999999999998  5799999999885                       77899999999


Q ss_pred             cCceEEEeCC
Q 022923          173 LPFFRFYRGA  182 (290)
Q Consensus       173 ~PT~~~~~~G  182 (290)
                      +|++++++.+
T Consensus        98 ~P~~~l~d~~  107 (116)
T cd02966          98 LPTTFLIDRD  107 (116)
T ss_pred             cceEEEECCC
Confidence            9999999533

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.11  E-value=6.5e-10  Score=96.28  Aligned_cols=85  Identities=14%  Similarity=0.123  Sum_probs=66.9

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-------------HhHHHhcCc--cccCceEEEeCCCceee
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-------------KSMCYSLNV--HVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-------------~~l~~~~~I--~~~PT~~~~~~G~~~v~  187 (290)
                      +|+||++||++|++..|.+.+++++| ++.++.|++|+.             ..+.+.|++  .++||.++++.....+.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence            77899999999999999999999998 477877776632             236678995  69999999854331323


Q ss_pred             eecCCccCHHHHHHHHHhhCC
Q 022923          188 SFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ....|..+.+++.+.|++.+.
T Consensus       152 ~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        152 PLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEECCCCHHHHHHHHHHHHh
Confidence            445689999999999988863

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.07  E-value=1.2e-09  Score=87.22  Aligned_cols=91  Identities=18%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHH-HH--HHHHHC-CCcEEEEEecc--ccHhHHHhcCccccCceEEEeCCCceeeeec
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS  190 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~-l~--~la~~~-~~v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~  190 (290)
                      .++|+++|+|+++||.+|+.+... |.  ++.+.+ .++.++.+|++  +...++..|++.++|+++++....+.+....
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~   94 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW   94 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence            468999999999999999999764 32  444444 35888888887  4667899999999999999975122355555


Q ss_pred             CCccCHHHHHHHHHhhC
Q 022923          191 CTNATIKKFKDALAKHT  207 (290)
Q Consensus       191 ~g~~~~~~l~~~L~k~~  207 (290)
                      .|..+.++|...|++..
T Consensus        95 ~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          95 SGNITPEDLLSQLIEFL  111 (114)
T ss_pred             cCCCCHHHHHHHHHHHH
Confidence            58999999999988764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.02  E-value=2.8e-09  Score=87.81  Aligned_cols=98  Identities=13%  Similarity=0.007  Sum_probs=78.7

Q ss_pred             hHHHHHHHhcCCCeEEEEEeC--CCChHHHHHHHHHHHHHHHCC-C-cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFS--PGCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA--~WC~~Ck~~~p~l~~la~~~~-~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      .++++.+.  .....+|.|-.  --++-+-...-.+.+++++|+ . ++|++||+|++++++.+|+|.++||++||+||+
T Consensus        25 ~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk  102 (132)
T PRK11509         25 SRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN  102 (132)
T ss_pred             ccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence            45666663  34445555543  345677788889999999997 3 899999999999999999999999999999997


Q ss_pred             ceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          184 GRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                        ......|..+.+++.++|++++..
T Consensus       103 --~v~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509        103 --YRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             --EEEEEeCcCCHHHHHHHHHHHhcC
Confidence              444455889999999999999754

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.00  E-value=7.9e-10  Score=83.29  Aligned_cols=63  Identities=24%  Similarity=0.442  Sum_probs=49.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHH---HHHHH-HCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~-~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      .++|+++|+|+++||++|+.+...+   .++.+ ...++.+++||.++..... .+..+++|+++|++
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLD   81 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEEE
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEeC
Confidence            4699999999999999999999877   35544 2367999999998766543 22237799999985

...

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.00  E-value=2.2e-09  Score=87.00  Aligned_cols=72  Identities=17%  Similarity=0.264  Sum_probs=56.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEecc---------------------------ccHhHHHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE---------------------------EHKSMCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d---------------------------~~~~l~~~~  168 (290)
                      ++++++|+||++||++|+...|.++++.++|.+  +.++.|+.+                           ....+.+.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            579999999999999999999999999999964  778777541                           123567889


Q ss_pred             CccccCceEEEeCCCceeeeec
Q 022923          169 NVHVLPFFRFYRGAHGRVCSFS  190 (290)
Q Consensus       169 ~I~~~PT~~~~~~G~~~v~~~~  190 (290)
                      ++.++|++++++... ++....
T Consensus       102 ~v~~~P~~~vid~~G-~v~~~~  122 (126)
T cd03012         102 GNQYWPALYLIDPTG-NVRHVH  122 (126)
T ss_pred             CCCcCCeEEEECCCC-cEEEEE
Confidence            999999999995332 354433

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.96  E-value=3.7e-09  Score=96.96  Aligned_cols=109  Identities=17%  Similarity=0.335  Sum_probs=81.2

Q ss_pred             CCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      -+.+.+|.+.++|.+.+... .+..|||+||-+.+..|..|...|..|+.+|+.++|++|..+..+ +..+|.+.++||+
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl  202 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL  202 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence            35788999988999988532 356799999999999999999999999999999999999988765 7889999999999


Q ss_pred             EEEeCCC--ceeeeec---CCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAH--GRVCSFS---CTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~--~~v~~~~---~g~~~~~~l~~~L~k~~  207 (290)
                      ++|++|.  +.++++.   +...+..+|..+|.++.
T Consensus       203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G  238 (265)
T PF02114_consen  203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG  238 (265)
T ss_dssp             EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred             EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence            9999997  2222221   22367889999999885

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.96  E-value=1.3e-09  Score=86.13  Aligned_cols=63  Identities=24%  Similarity=0.407  Sum_probs=46.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEe---cccc-----------------HhHHHhcCccccCce
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVN---YEEH-----------------KSMCYSLNVHVLPFF  176 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd---~d~~-----------------~~l~~~~~I~~~PT~  176 (290)
                      .+++++|+||++||++|+.+.|.++++.+++. ++.++.+.   .++.                 .++.++|++.++|+.
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~   99 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA   99 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence            37899999999999999999999999988874 46666552   1122                 234556677777777


Q ss_pred             EEEe
Q 022923          177 RFYR  180 (290)
Q Consensus       177 ~~~~  180 (290)
                      ++++
T Consensus       100 ~vid  103 (114)
T cd02967         100 VLLD  103 (114)
T ss_pred             EEEC
Confidence            6664

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.95  E-value=5.1e-09  Score=86.53  Aligned_cols=83  Identities=19%  Similarity=0.284  Sum_probs=62.1

Q ss_pred             CCCeEEEEEeCC-CChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------cHhHHHhcCcc--
Q 022923          118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------HKSMCYSLNVH--  171 (290)
Q Consensus       118 ~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------~~~l~~~~~I~--  171 (290)
                      .+|+++|+||++ ||++|+...|.+.++.+.|  .++.++.|..+.                     +..+.++|++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            689999999999 9999999999999998875  347887776543                     34678899998  


Q ss_pred             -------ccCceEEEeCCCceeeeecCCccC--HHHHHH
Q 022923          172 -------VLPFFRFYRGAHGRVCSFSCTNAT--IKKFKD  201 (290)
Q Consensus       172 -------~~PT~~~~~~G~~~v~~~~~g~~~--~~~l~~  201 (290)
                             ++|+++++...+ ++.....|..+  ..++.+
T Consensus       107 ~~~~~~~~~P~~~lId~~G-~V~~~~~g~~~~~~~~~~~  144 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDG-KVVYRHVGPDPDEESDLEA  144 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTS-BEEEEEESSBTTSHHSHHH
T ss_pred             cccccCCeecEEEEEECCC-EEEEEEeCCCCCCCCChhh
Confidence                   999988775443 45554444444  444443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.95  E-value=8e-09  Score=90.00  Aligned_cols=86  Identities=14%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc--------------------ccHhHHHhcCccccCceE
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------------------EHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--------------------~~~~l~~~~~I~~~PT~~  177 (290)
                      .+++++|+||++||++|+.+.|.+.++.+++ ++.++.|+.+                    ...++.+.|+|.++|+.+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~  151 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV  151 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence            5789999999999999999999999998775 3444444321                    134678899999999988


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +++..+ ++.. .......+.+.+.++..
T Consensus       152 lID~~G-~I~~-~g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       152 LLDQDG-KIRA-KGLTNTREHLESLLEAD  178 (189)
T ss_pred             EECCCC-eEEE-ccCCCCHHHHHHHHHHH
Confidence            775332 3543 32334566777777655

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.94  E-value=2.5e-09  Score=92.38  Aligned_cols=110  Identities=27%  Similarity=0.448  Sum_probs=92.5

Q ss_pred             hhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccc
Q 022923           93 WEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV  172 (290)
Q Consensus        93 ~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~  172 (290)
                      |.....+.+.+|.+..+|.+.+.  ....||++||-+.-..|+.|...++.|++.+-+.+|++||++..+-++.+++|..
T Consensus        60 ~~~~GhG~y~ev~~Ekdf~~~~~--kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV  137 (211)
T KOG1672|consen   60 WLSKGHGEYEEVASEKDFFEEVK--KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV  137 (211)
T ss_pred             HHHcCCceEEEeccHHHHHHHhh--cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence            55667889999999999999984  4677999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEeCCC--ceeeeec-CCc---cCHHHHHHHHH
Q 022923          173 LPFFRFYRGAH--GRVCSFS-CTN---ATIKKFKDALA  204 (290)
Q Consensus       173 ~PT~~~~~~G~--~~v~~~~-~g~---~~~~~l~~~L~  204 (290)
                      +|++.+|++|+  .++++|. .|+   .+.+.|+.-|.
T Consensus       138 LP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~  175 (211)
T KOG1672|consen  138 LPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA  175 (211)
T ss_pred             eeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence            99999999998  3344443 122   34455555544

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.91  E-value=6.6e-09  Score=79.15  Aligned_cols=83  Identities=29%  Similarity=0.479  Sum_probs=68.1

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEecc-ccHhHHHhcC--ccccCceEEEeCCCceeeeecCC--
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYE-EHKSMCYSLN--VHVLPFFRFYRGAHGRVCSFSCT--  192 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d-~~~~l~~~~~--I~~~PT~~~~~~G~~~v~~~~~g--  192 (290)
                      +++++++||++||++|+.+.|.+.++++.+. .+.++.+|.. .+..+...|+  +..+|+++++.++.. +.... +  
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~  109 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLV-GGK  109 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhh-hcc
Confidence            7899999999999999999999999999998 4999999997 7899999999  999999999988873 33322 3  


Q ss_pred             ccCHHHHHHHH
Q 022923          193 NATIKKFKDAL  203 (290)
Q Consensus       193 ~~~~~~l~~~L  203 (290)
                      ......+.+..
T Consensus       110 ~~~~~~~~~~~  120 (127)
T COG0526         110 VLPKEALIDAL  120 (127)
T ss_pred             cCCHHHHHHHh
Confidence            34444444443

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.90  E-value=8e-09  Score=90.92  Aligned_cols=90  Identities=10%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------cHhHHHhcCc--------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------HKSMCYSLNV--------------  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------~~~l~~~~~I--------------  170 (290)
                      .+++|||+|||+||++|+...|.+.++.++|.  ++.++.|++++           ...+++++++              
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            57999999999999999999999999999985  48999998631           2233444433              


Q ss_pred             ----------------------cccC---ceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          171 ----------------------HVLP---FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       171 ----------------------~~~P---T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                                            ..+|   +.+++ |.+|++..+..|..+.+++.+.|++++.
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflI-D~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLV-NKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                  1122   23333 3333466666677888899999988763

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.90  E-value=8.3e-09  Score=89.71  Aligned_cols=84  Identities=8%  Similarity=0.009  Sum_probs=62.2

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEE------EEEeccc-----------------------------cH
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF------LQVNYEE-----------------------------HK  162 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~------~~Vd~d~-----------------------------~~  162 (290)
                      .+|.++|+|||+||++|+...|.++++.++.  +.+      +-||.|+                             +.
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g  135 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG  135 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence            5999999999999999999999999997642  333      4444432                             23


Q ss_pred             hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          163 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       163 ~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      .+...|++.++|+.+|+-|.+|++.....|..+.+++.+.+
T Consensus       136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            45678999999888444355556877777888887776643

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.89  E-value=1.3e-08  Score=91.91  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=65.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------cHhHH-HhcC--------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------HKSMC-YSLN--------------  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------~~~l~-~~~~--------------  169 (290)
                      .++++||+||++||++|+...|.|.++.++|.  ++.++.|+++.           ....+ ++++              
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            57999999999999999999999999999985  48999998741           11222 2221              


Q ss_pred             --------------------ccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          170 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       170 --------------------I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                                          |...|+.++++.. |++.....|..+.++|++.|++++
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~-GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKN-GKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCC-CcEEEEECCCCCHHHHHHHHHHHh
Confidence                                1234776666332 346666668889999999998875

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.88  E-value=1.3e-08  Score=83.60  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=46.0

Q ss_pred             hcCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          116 HAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       116 ~~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ..++|+|+|+||++||++|+.|...+.   ++.+.. .++..+.+|.+....-....+ .++||++|++...
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g   90 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSL   90 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCC
Confidence            357999999999999999999998753   444443 356666777652211111233 7899999995443

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>smart00594 UAS UAS domain

Probab=98.85  E-value=2.6e-08  Score=80.79  Aligned_cols=87  Identities=10%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHCC-CcEEEEEecc--ccHhHHHhcCccccCceEEEeCCCc----ee
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHG----RV  186 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~~~G~~----~v  186 (290)
                      ..+|+++|+|+++||..|+.+...+-   ++.+... ++.+..+|++  +...++.+|+++++|+++++....+    .+
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~  104 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW  104 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence            46889999999999999999987532   4444433 5888888876  4567899999999999999954321    24


Q ss_pred             eeecCCccCHHHHHHHH
Q 022923          187 CSFSCTNATIKKFKDAL  203 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L  203 (290)
                      .....|..+.++|..+|
T Consensus       105 ~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      105 VGVVEGEISPEELMTFL  121 (122)
T ss_pred             eccccCCCCHHHHHHhh
Confidence            44556889999998876

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.79  E-value=6e-08  Score=82.64  Aligned_cols=91  Identities=18%  Similarity=0.239  Sum_probs=69.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------------------------cHhHHH
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------------------------~~~l~~  166 (290)
                      +++++||+||++||+.|....+.+.++.++|+  ++.|+.|+.|.                             +..+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            57899999999999999999999999999986  58888887753                             224677


Q ss_pred             hcCccccCceEEEeCCCceeeeec---------CCccCHHHHHHHHHhhCCC
Q 022923          167 SLNVHVLPFFRFYRGAHGRVCSFS---------CTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       167 ~~~I~~~PT~~~~~~G~~~v~~~~---------~g~~~~~~l~~~L~k~~~~  209 (290)
                      .|+|..+|++++++.++ ++....         .+..+.+++.+.|+..+..
T Consensus       104 ~~~v~~~P~~~lid~~G-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  154 (171)
T cd02969         104 AYGAACTPDFFLFDPDG-KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG  154 (171)
T ss_pred             HcCCCcCCcEEEECCCC-eEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence            89999999999996433 343221         0224667888888877643

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.76  E-value=3.8e-08  Score=66.81  Aligned_cols=60  Identities=28%  Similarity=0.505  Sum_probs=52.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHH---hcCccccCceEEEeCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGA  182 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~---~~~I~~~PT~~~~~~G  182 (290)
                      ++.||++||++|+.+.+.+.++....+++.+..+|++......+   .+++..+|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            57899999999999999999995556789999999998776655   8999999999999776

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.75  E-value=1.1e-07  Score=84.69  Aligned_cols=92  Identities=16%  Similarity=0.258  Sum_probs=76.4

Q ss_pred             HHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-----------ccHhHHHhcCccccCceEEE
Q 022923          111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------EHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       111 ~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------~~~~l~~~~~I~~~PT~~~~  179 (290)
                      .+.+....++.-|++||.+.|+.|+.+.|.+..++++| ++.+..|++|           .+.+++++++|..+|+++++
T Consensus       112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv  190 (215)
T PF13728_consen  112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLV  190 (215)
T ss_pred             HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEE
Confidence            33333345788999999999999999999999999999 7777777776           35789999999999999988


Q ss_pred             eCCCceeeeecCCccCHHHHHHHH
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      ..+.........|..+.++|.+-|
T Consensus       191 ~~~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  191 NPNTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             ECCCCeEEEEeeecCCHHHHHHhh
Confidence            776656777777899999998754

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.73  E-value=8.6e-08  Score=80.36  Aligned_cols=87  Identities=13%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEec--------cc---cHhHHHh-cC--------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNY--------EE---HKSMCYS-LN--------------  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~--------d~---~~~l~~~-~~--------------  169 (290)
                      .+|++||+|||+||++|+...|.+.++.++|+  ++.++.|++        +.   ....+++ ++              
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~  100 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS  100 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence            57899999999999999999999999999985  589999885        11   1222321 21              


Q ss_pred             ---------c---cccCc----eEEE-eCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          170 ---------V---HVLPF----FRFY-RGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       170 ---------I---~~~PT----~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                               +   .++|+    .+++ ++|  ++.....|..+.+++...|++.
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G--~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540       101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEG--QVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCcHHHHHHhcCCCCCCCccEEEEEcCCC--cEEEEECCCCCHHHHHHHHHHh
Confidence                     1   13675    3444 344  4666666888888888887764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PLN02412 probable glutathione peroxidase

Probab=98.72  E-value=8.3e-08  Score=82.00  Aligned_cols=90  Identities=11%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc--------ccHhH----HHhcC--------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE--------EHKSM----CYSLN--------------  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d--------~~~~l----~~~~~--------------  169 (290)
                      .+|++||+||++||++|+...|.+.++.++|.  ++.++.|+++        ...++    +++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            57999999999999999999999999999986  4889998864        11121    12211              


Q ss_pred             --------------------ccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          170 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       170 --------------------I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                                          |...|+.++++.+ |++.....|..+.+++...|++++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~-G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKE-GKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCC-CcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                3345776666332 2466666688888899888887753

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.72  E-value=5.4e-08  Score=70.08  Aligned_cols=69  Identities=16%  Similarity=0.293  Sum_probs=53.3

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCCceeeeecCCccCHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK  198 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~  198 (290)
                      +..||++||++|+.+.+.+++     .++.+..+|+++++.    +.+.+++.++|++++.  |+  +  .  .+.+.++
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~--~--~--~g~~~~~   68 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK--I--I--VGFDPEK   68 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE--E--E--eeCCHHH
Confidence            567999999999999988876     368899999987654    5667999999999884  43  2  2  2357788


Q ss_pred             HHHHHH
Q 022923          199 FKDALA  204 (290)
Q Consensus       199 l~~~L~  204 (290)
                      +.++|+
T Consensus        69 i~~~i~   74 (74)
T TIGR02196        69 LDQLLE   74 (74)
T ss_pred             HHHHhC
Confidence            877763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.67  E-value=1.1e-07  Score=69.58  Aligned_cols=70  Identities=19%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHh-----cCccccCceEEEeCCCceeeeecCCccCHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS-----LNVHVLPFFRFYRGAHGRVCSFSCTNATIK  197 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~-----~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~  197 (290)
                      ++.||++||++|+.+.+.+.++     ++.+-.+|++++......     +++..+|++ ++.+|.  +.    ...+..
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~--~l----~~~~~~   69 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS--FL----TNPSAA   69 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe--Ee----cCCCHH
Confidence            5679999999999999998776     455667888877666555     389999997 566664  22    245555


Q ss_pred             HHHHHHH
Q 022923          198 KFKDALA  204 (290)
Q Consensus       198 ~l~~~L~  204 (290)
                      ++.+.|.
T Consensus        70 ~~~~~l~   76 (77)
T TIGR02200        70 QVKAKLQ   76 (77)
T ss_pred             HHHHHhh
Confidence            6666554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.5e-08  Score=86.76  Aligned_cols=84  Identities=14%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCcc------
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVH------  171 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~------  171 (290)
                      .+...++.+.+++.+..+..+.++|.|||.|.+.|+...|.+.+|..+|.  +.+|.+||+...++.+++|+|.      
T Consensus       125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr  204 (265)
T KOG0914|consen  125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR  204 (265)
T ss_pred             heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence            56677788889999988888999999999999999999999999999985  4999999999999999999886      


Q ss_pred             ccCceEEEeCCC
Q 022923          172 VLPFFRFYRGAH  183 (290)
Q Consensus       172 ~~PT~~~~~~G~  183 (290)
                      .+||+++|++|+
T Consensus       205 QLPT~ilFq~gk  216 (265)
T KOG0914|consen  205 QLPTYILFQKGK  216 (265)
T ss_pred             cCCeEEEEccch
Confidence            689999999998

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.61  E-value=1.6e-07  Score=78.69  Aligned_cols=41  Identities=15%  Similarity=0.182  Sum_probs=36.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d  159 (290)
                      .+|+|+|+|||+||+ |+...|.+.++.++|.  ++.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            479999999999999 9999999999999985  4888888753

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.56  E-value=4.5e-07  Score=74.57  Aligned_cols=75  Identities=20%  Similarity=0.371  Sum_probs=53.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc---CccccCceEEEeCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGA  182 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~---~I~~~PT~~~~~~G  182 (290)
                      ++..+.+.....+.-++.|..+|||.|+...|.+.++++..+++.+--+..|++.++.++|   +...+|+|+|++++
T Consensus        30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred             HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence            3444555555677789999999999999999999999999999888888888888887765   68999999999655

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.53  E-value=7e-07  Score=72.37  Aligned_cols=97  Identities=12%  Similarity=0.189  Sum_probs=62.7

Q ss_pred             eCCHhHHHHHHHh--cCCCeEEEEEeC-------CCChHHHHHHHHHHHHHHHCC-CcEEEEEecccc-------HhHHH
Q 022923          104 VASAQDLVESLWH--AGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH-------KSMCY  166 (290)
Q Consensus       104 I~s~~~f~~~l~~--~~~k~vlV~FyA-------~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~-------~~l~~  166 (290)
                      |...++|.+.+..  ..+++++|+|++       +||+.|+...|.+++.....+ +..|+.|.+...       ...-+
T Consensus         2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~   81 (119)
T PF06110_consen    2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT   81 (119)
T ss_dssp             EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred             ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence            3456788888863  567899999995       499999999999998887764 688888887432       22333


Q ss_pred             --hcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          167 --SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       167 --~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                        +++|.++||++-|..++ ++.+..  -.+.+.+..++
T Consensus        82 ~p~~~l~~IPTLi~~~~~~-rL~e~e--~~~~~lv~~~~  117 (119)
T PF06110_consen   82 DPDLKLKGIPTLIRWETGE-RLVEEE--CLNEDLVEMFF  117 (119)
T ss_dssp             --CC---SSSEEEECTSS--EEEHHH--HH-HHHHHHHH
T ss_pred             cceeeeeecceEEEECCCC-ccchhh--hccHHHHHHHh
Confidence              59999999999997774 544322  13444444444

; PDB: 1V9W_A 1WOU_A.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.52  E-value=9.6e-07  Score=75.37  Aligned_cols=57  Identities=19%  Similarity=0.180  Sum_probs=48.1

Q ss_pred             CCCeEEEEEeCCC-ChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCcccc
Q 022923          118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVL  173 (290)
Q Consensus       118 ~~k~vlV~FyA~W-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~~  173 (290)
                      .+|+++|+||++| |++|+...|.+.++.+++.++.++.|+.|.                       ...+++.|+|...
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~  122 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA  122 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence            4789999999999 999999999999999998888888887653                       1256778888777


Q ss_pred             C
Q 022923          174 P  174 (290)
Q Consensus       174 P  174 (290)
                      |
T Consensus       123 ~  123 (167)
T PRK00522        123 E  123 (167)
T ss_pred             c
Confidence            7

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.51  E-value=1.2e-06  Score=79.99  Aligned_cols=96  Identities=8%  Similarity=0.154  Sum_probs=78.4

Q ss_pred             HHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-----------HhHHHhcCccccCceEEEe
Q 022923          112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------KSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       112 ~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----------~~l~~~~~I~~~PT~~~~~  180 (290)
                      +.+..-.++.-|++||.+-|+.|.++.|.+..++++|+ +.++-|++|..           ..++++++|..+|++++..
T Consensus       143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~  221 (256)
T TIGR02739       143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN  221 (256)
T ss_pred             HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence            33433356789999999999999999999999999994 77777777643           5689999999999998887


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      .+.++......|..+.++|.+-|...+.
T Consensus       222 ~~t~~~~pv~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       222 PKSQKMSPLAYGFISQDELKERILNVLT  249 (256)
T ss_pred             CCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence            7655677777799999999988876653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.7e-07  Score=82.86  Aligned_cols=100  Identities=21%  Similarity=0.286  Sum_probs=80.4

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      ++.|...++|   +.. +++.++++||++||..|+++...++.+++..+++.|++++.++.++++..+.|...|+++++.
T Consensus         3 v~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~   78 (227)
T KOG0911|consen    3 VQFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF   78 (227)
T ss_pred             ceeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence            5667777788   222 789999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .|+ .+...  .+.+...+...++.+.
T Consensus        79 ~~~-~v~~l--~~~~~~~~~~~~~~~~  102 (227)
T KOG0911|consen   79 LGE-KVDRL--SGADPPFLVSKVEKLA  102 (227)
T ss_pred             cch-hhhhh--hccCcHHHHHHHHHhh
Confidence            887 23222  2444444444444443

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.47  E-value=6.6e-07  Score=71.28  Aligned_cols=66  Identities=20%  Similarity=0.329  Sum_probs=55.5

Q ss_pred             CCCeEEEEEeCC-CChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcc--
Q 022923          118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH--  171 (290)
Q Consensus       118 ~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~--  171 (290)
                      .+++++|.||+. ||++|+...+.+.++.++|+  ++.++.|..+.                     +..+++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            579999999999 99999999999999998875  68999998764                     33567888888  


Q ss_pred             ----ccCceEEEeCCC
Q 022923          172 ----VLPFFRFYRGAH  183 (290)
Q Consensus       172 ----~~PT~~~~~~G~  183 (290)
                          .+|++++++.+.
T Consensus       104 ~~~~~~p~~~lid~~g  119 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDG  119 (124)
T ss_dssp             TTSEESEEEEEEETTS
T ss_pred             cCCceEeEEEEECCCC
Confidence                888888886554

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.47  E-value=9.1e-07  Score=72.18  Aligned_cols=84  Identities=12%  Similarity=0.063  Sum_probs=61.7

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcccc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL  173 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~~~  173 (290)
                      .+++++|+|| +.||+.|....+.+.++.+++.  ++.++.|..|.                     ...+++.|++..+
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            4789999999 6899999999999999988774  57777776543                     3457788999988


Q ss_pred             ---------CceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          174 ---------PFFRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       174 ---------PT~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                               |++++++..+ ++.....|....+.+.+.
T Consensus       102 ~~~~~~~~~p~~~lid~~G-~v~~~~~g~~~~~~~~~~  138 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDG-KIVKVWRKVKPKGHAEEV  138 (140)
T ss_pred             cccccCCcceeEEEECCCC-EEEEEEecCCccchHHHH
Confidence                     8888886432 455444466555555443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.47  E-value=8.5e-07  Score=72.98  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=51.0

Q ss_pred             CCCeEEEEEeCCC-ChHHHHHHHHHHHHHHHCCCcEEEEEecccc-----------------------HhHHHhcCccc-
Q 022923          118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------------------KSMCYSLNVHV-  172 (290)
Q Consensus       118 ~~k~vlV~FyA~W-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----------------------~~l~~~~~I~~-  172 (290)
                      .+|++||+||+.| |++|+...|.+.++.++++++.|+.|+.|..                       ..+++.|++.. 
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~  104 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK  104 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence            4789999999999 6999999999999999998999999987531                       34566777753 


Q ss_pred             -----cCceEEEe
Q 022923          173 -----LPFFRFYR  180 (290)
Q Consensus       173 -----~PT~~~~~  180 (290)
                           .|+.++++
T Consensus       105 ~~~~~~~~~~iid  117 (143)
T cd03014         105 DLGLLARAVFVID  117 (143)
T ss_pred             cCCccceEEEEEc
Confidence                 57777774

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>KOG3414 consensus Component of the U4/U6

Probab=98.43  E-value=2.3e-06  Score=69.29  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=86.6

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      .++++..+.++.+.....+.|+|-|.-+|-+.|.++...+..+++...+ ..++-||+++-+++.+-|++...||++||-
T Consensus         6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf   85 (142)
T KOG3414|consen    6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF   85 (142)
T ss_pred             cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence            4577888899999888899999999999999999999999999999877 688899999999999999999999999887


Q ss_pred             CCCceeeeecCC--------ccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCT--------NATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g--------~~~~~~l~~~L~k~~  207 (290)
                      +++-....+..|        -.+.++|++.++-..
T Consensus        86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy  120 (142)
T KOG3414|consen   86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY  120 (142)
T ss_pred             cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence            876222222212        245677887777543

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.43  E-value=6.2e-08  Score=86.06  Aligned_cols=95  Identities=17%  Similarity=0.272  Sum_probs=81.5

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      .+.+++.+.+    ..-.++.|+|+||+.|+.+.|.|+.++.--.  +|.+..||++.++.|.-+|-|...|||.=.++|
T Consensus        29 ~~eenw~~~l----~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG  104 (248)
T KOG0913|consen   29 IDEENWKELL----TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG  104 (248)
T ss_pred             ecccchhhhh----chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence            3457888887    3348999999999999999999999887544  489999999999999999999999999988898


Q ss_pred             CceeeeecCCccCHHHHHHHHHhh
Q 022923          183 HGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      .  ...|. |.++..+|+.|++..
T Consensus       105 e--Frrys-gaRdk~dfisf~~~r  125 (248)
T KOG0913|consen  105 E--FRRYS-GARDKNDFISFEEHR  125 (248)
T ss_pred             c--ccccc-CcccchhHHHHHHhh
Confidence            6  55555 899999999998754

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.41  E-value=2.6e-07  Score=77.88  Aligned_cols=66  Identities=15%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccc-------------------------cHhHHHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEE-------------------------HKSMCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~-------------------------~~~l~~~~  168 (290)
                      .+|.|.+||.|.||++||.+.|.+.++.++..    .+.++-|+-|.                         ..+++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            57999999999999999999999988877642    35555555442                         23578899


Q ss_pred             CccccCceEEEeCCC
Q 022923          169 NVHVLPFFRFYRGAH  183 (290)
Q Consensus       169 ~I~~~PT~~~~~~G~  183 (290)
                      +|.++|++++.+...
T Consensus       112 ~v~~iP~l~i~~~dG  126 (157)
T KOG2501|consen  112 EVKGIPALVILKPDG  126 (157)
T ss_pred             ccCcCceeEEecCCC
Confidence            999999998886543

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.38  E-value=3e-06  Score=62.94  Aligned_cols=73  Identities=22%  Similarity=0.393  Sum_probs=56.7

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCC-ccCHHHHHHH
Q 022923          124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDA  202 (290)
Q Consensus       124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g-~~~~~~l~~~  202 (290)
                      |.+++++|+.|..+...++++...++ +.+--+|.++.+++ .+|+|.++|++++  ||+  +. +. | ..+.++|+++
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~-~~-G~~p~~~el~~~   74 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VV-FV-GRVPSKEELKEL   74 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EE-EE-SS--HHHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EE-EE-ecCCCHHHHHHH
Confidence            34478889999999999999999995 88888888777777 9999999999955  775  32 33 5 6788888888


Q ss_pred             HH
Q 022923          203 LA  204 (290)
Q Consensus       203 L~  204 (290)
                      |+
T Consensus        75 l~   76 (76)
T PF13192_consen   75 LE   76 (76)
T ss_dssp             HH
T ss_pred             hC
Confidence            74

...

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.38  E-value=2.3e-06  Score=74.06  Aligned_cols=89  Identities=11%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CCCeE-EEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------c-Hh----HHHh---------------
Q 022923          118 GDKLV-VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------H-KS----MCYS---------------  167 (290)
Q Consensus       118 ~~k~v-lV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~-~~----l~~~---------------  167 (290)
                      .+|++ ++.|||+||++|+...|.++++.++|.  ++.++.|+++.       . .+    +.++               
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g  118 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG  118 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence            46754 556699999999999999999999885  58999997631       0 10    0111               


Q ss_pred             ---------------------cCccccCc---eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          168 ---------------------LNVHVLPF---FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       168 ---------------------~~I~~~PT---~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                                           +++.++|+   .+++ |.+|++.....|..+.+.+.+.|++.+
T Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflI-D~~G~Iv~~~~g~~~~~~l~~~I~~ll  181 (183)
T PTZ00256        119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLI-DGQGKVVKYFSPKVNPNEMIQDIEKLL  181 (183)
T ss_pred             CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEE-CCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence                                 13457785   2333 333457666668888888888888765

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.37  E-value=3.3e-06  Score=72.20  Aligned_cols=88  Identities=14%  Similarity=0.038  Sum_probs=62.4

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|++||+|| +.||++|....+.+.++.++|.  ++.++.|.+|.                            ...+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            4689999999 8999999999999999998874  47777776542                            223567


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      .|++.      .+|+.++++... ++....    ....+.+++.+.|+..
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G-~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEG-IIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78886      567887775333 343333    1234677777777655

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.36  E-value=4.5e-06  Score=75.85  Aligned_cols=90  Identities=12%  Similarity=0.133  Sum_probs=73.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------cHhHHHhcCccccCceEEEeCCCcee
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRGAHGRV  186 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------~~~l~~~~~I~~~PT~~~~~~G~~~v  186 (290)
                      .++.-|++||.+.|+.|.++.|.+..++++| ++.++-|++|.           +...+++++|..+|++++...+.+..
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            4668899999999999999999999999998 45555555542           34567899999999999987766567


Q ss_pred             eeecCCccCHHHHHHHHHhhCC
Q 022923          187 CSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      .....|..+.++|.+-|...+.
T Consensus       221 ~pv~~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        221 RPLSYGFITQDDLAKRFLNVST  242 (248)
T ss_pred             EEEeeccCCHHHHHHHHHHHHh
Confidence            7777799999999988876653

>TIGR03137 AhpC peroxiredoxin

Probab=98.31  E-value=5.3e-06  Score=72.11  Aligned_cols=87  Identities=8%  Similarity=-0.021  Sum_probs=62.8

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .+|++||+|| ++||++|....+.+.++.+++.  ++.++.|.+|.                         ...+++.|+
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            5789999999 9999999999999999888773  57777776552                         235678889


Q ss_pred             cc------ccCceEEEe-CCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          170 VH------VLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       170 I~------~~PT~~~~~-~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      |.      ..|+.++++ +|+  +....    ..+++.+++.+.|+..
T Consensus       110 v~~~~~g~~~p~tfiID~~G~--I~~~~~~~~~~~~~~~~ll~~l~~~  155 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGV--IQAVEITDNGIGRDASELLRKIKAA  155 (187)
T ss_pred             CcccCCCceeeEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            86      468877774 444  33222    2235778887777544

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.31  E-value=6e-06  Score=66.66  Aligned_cols=89  Identities=9%  Similarity=0.104  Sum_probs=68.8

Q ss_pred             cCCCeEEEEEeCC----CChHHHHHH--HHHHHHHHHCCCcEEEEEeccc--cHhHHHhcCccccCceEEEe--CCCcee
Q 022923          117 AGDKLVVVDFFSP----GCGGCKALH--PKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR--GAHGRV  186 (290)
Q Consensus       117 ~~~k~vlV~FyA~----WC~~Ck~~~--p~l~~la~~~~~v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~~~--~G~~~v  186 (290)
                      .+.|.++||||++    ||..|+...  |.+.++-.  .++.+...|++.  ...++..+++.++|++.++.  +++..+
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v   92 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI   92 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence            5799999999999    999998764  34444443  358888888874  45689999999999998883  444345


Q ss_pred             eeecCCccCHHHHHHHHHhhC
Q 022923          187 CSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .....|..++++|...|....
T Consensus        93 v~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          93 VGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH
Confidence            555669999999999988764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.28  E-value=4.1e-06  Score=63.33  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhcC--ccccCceEEEeCCCceeeeecCCccC
Q 022923          122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLN--VHVLPFFRFYRGAHGRVCSFSCTNAT  195 (290)
Q Consensus       122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~--I~~~PT~~~~~~G~~~v~~~~~g~~~  195 (290)
                      -++.|+.+||++|++....|+++..++.++.+..+|++++.    ++.+.++  +..+|+++  .+|+ .+.       .
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~-~ig-------g   71 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQK-HIG-------G   71 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCE-EEc-------C
Confidence            36789999999999999999999988888999999998643    4555554  58899975  3775 221       2


Q ss_pred             HHHHHHHHHhhC
Q 022923          196 IKKFKDALAKHT  207 (290)
Q Consensus       196 ~~~l~~~L~k~~  207 (290)
                      .++|.+++++++
T Consensus        72 ~~~~~~~~~~~~   83 (85)
T PRK11200         72 CTDFEAYVKENL   83 (85)
T ss_pred             HHHHHHHHHHhc
Confidence            367777777665

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.27  E-value=4.2e-05  Score=64.92  Aligned_cols=118  Identities=13%  Similarity=0.227  Sum_probs=94.6

Q ss_pred             ccchhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCe-EEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccH
Q 022923           85 RIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKL-VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHK  162 (290)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~-vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~  162 (290)
                      ....+..|.....-|.+.+++. +++....  ..+++ +++.|+.........+...+..+++++.+ +.|+.+|++..+
T Consensus        63 ~~~~l~~fI~~~~~P~v~~~t~-~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~  139 (184)
T PF13848_consen   63 TPEELKKFIKKNSFPLVPELTP-ENFEKLF--SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP  139 (184)
T ss_dssp             SHHHHHHHHHHHSSTSCEEEST-THHHHHH--STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH
T ss_pred             CHHHHHHHHHHhccccccccch-hhHHHHh--cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH
Confidence            3445678999999999999986 4777777  44555 88888877788899999999999999866 999999999989


Q ss_pred             hHHHhcCcc--ccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          163 SMCYSLNVH--VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       163 ~l~~~~~I~--~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      .+++.|++.  .+|+++++....++..-...+..+.+.+.+||++
T Consensus       140 ~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  140 RLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             HHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            999999999  9999999984443332223478999999999874

...

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.25  E-value=7.1e-06  Score=67.31  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccccH
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEHK  162 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~~~  162 (290)
                      ++.+|++||++||+.|+...|.+.++.+++  .++.++.|+.+...
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~   69 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE   69 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence            344555556999999999999999999988  46889999876543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.24  E-value=2.5e-06  Score=63.48  Aligned_cols=58  Identities=16%  Similarity=0.191  Sum_probs=44.9

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----hHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|+++||++|+.+.+.+.++.-. +.+.++.||.+++.     .+.+.+++..+|+++  .+|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence            4789999999999999999998621 23788888876543     366778999999983  3665

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.22  E-value=1e-05  Score=66.76  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=56.6

Q ss_pred             CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------c--HhHHHhcCccc
Q 022923          119 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------H--KSMCYSLNVHV  172 (290)
Q Consensus       119 ~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~--~~l~~~~~I~~  172 (290)
                      +++++|.|| ++||+.|....|.+.++.+++.  ++.++.|+.+.                     .  ..+.+.|++..
T Consensus        28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~  107 (149)
T cd03018          28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD  107 (149)
T ss_pred             CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence            378888887 9999999999999999998874  58888776542                     2  45677788873


Q ss_pred             ----cC--ceEEEe-CCCceeeeecCC----ccCHHHHHHHHH
Q 022923          173 ----LP--FFRFYR-GAHGRVCSFSCT----NATIKKFKDALA  204 (290)
Q Consensus       173 ----~P--T~~~~~-~G~~~v~~~~~g----~~~~~~l~~~L~  204 (290)
                          +|  +.++++ +|+  +.....|    ..+..++.+.|+
T Consensus       108 ~~~~~~~~~~~lid~~G~--v~~~~~~~~~~~~~~~~~~~~~~  148 (149)
T cd03018         108 EDLGVAERAVFVIDRDGI--IRYAWVSDDGEPRDLPDYDEALD  148 (149)
T ss_pred             ccCCCccceEEEECCCCE--EEEEEecCCcccccchhHHHHhh
Confidence                33  666664 443  4333222    345555555443

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.21  E-value=2.1e-05  Score=62.27  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccH----hHHHhcCcc-ccCc
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHK----SMCYSLNVH-VLPF  175 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~----~l~~~~~I~-~~PT  175 (290)
                      .+|++.++|++++..+.+++++|+=+++.|+-.......|++.....++ +.++.+|+-++.    .++++|||. .-|.
T Consensus         2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ   81 (105)
T PF11009_consen    2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ   81 (105)
T ss_dssp             -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred             CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence            4688999999999988899999999999999999999999999988776 999999998765    567899987 6899


Q ss_pred             eEEEeCCCceeeeecCCccCHHHH
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      +++++||+ -+........+.++|
T Consensus        82 ~ili~~g~-~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   82 VILIKNGK-VVWHASHWDITAEAL  104 (105)
T ss_dssp             EEEEETTE-EEEEEEGGG-SHHHH
T ss_pred             EEEEECCE-EEEECccccCCHHhc
Confidence            99999998 343333355666655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.20  E-value=1.3e-05  Score=66.82  Aligned_cols=79  Identities=11%  Similarity=0.082  Sum_probs=54.4

Q ss_pred             CCCeEEEEEeCC-CChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcccc
Q 022923          118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL  173 (290)
Q Consensus       118 ~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~~~  173 (290)
                      .++++||+||+. ||+.|....+.+.++.+++.  ++.++.|+.|.                     ...+.+.|++...
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE  108 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence            578999999976 68889999999998888873  58888887653                     2346778887654


Q ss_pred             ------------CceEEEe-CCCceeeeecCCccCHHH
Q 022923          174 ------------PFFRFYR-GAHGRVCSFSCTNATIKK  198 (290)
Q Consensus       174 ------------PT~~~~~-~G~~~v~~~~~g~~~~~~  198 (290)
                                  |+.++++ +|  ++.....|....+.
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~G--~i~~~~~g~~~~~~  144 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDADG--KIEHVFDKFKTSNH  144 (154)
T ss_pred             cccccccccCcceEEEEECCCC--EEEEEEcCCCcchh
Confidence                        5555664 44  45544444433333

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.6e-05  Score=66.80  Aligned_cols=90  Identities=18%  Similarity=0.250  Sum_probs=69.1

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHC-CCcEEEEEeccc----------------cHhHHHhcCccccCce
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMN-PDVQFLQVNYEE----------------HKSMCYSLNVHVLPFF  176 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~----------------~~~l~~~~~I~~~PT~  176 (290)
                      ..++..++.|-.+.|..|.++...+.   ++.+.+ +++.++.+|+..                ..+|++.|+|+++||+
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf  119 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF  119 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence            46899999999999999999998775   444444 347778777642                3589999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +||+..+ .......|....++|...++-..
T Consensus       120 vFfdk~G-k~Il~lPGY~ppe~Fl~vlkYVa  149 (182)
T COG2143         120 VFFDKTG-KTILELPGYMPPEQFLAVLKYVA  149 (182)
T ss_pred             EEEcCCC-CEEEecCCCCCHHHHHHHHHHHH
Confidence            9995443 34444558899999988776543

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.18  E-value=1.5e-05  Score=70.20  Aligned_cols=89  Identities=11%  Similarity=0.018  Sum_probs=64.8

Q ss_pred             CCCeEEE-EEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------------cHhHHHh
Q 022923          118 GDKLVVV-DFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS  167 (290)
Q Consensus       118 ~~k~vlV-~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~  167 (290)
                      .++.++| .||++||+.|....+.+.++.+++.  ++.++.|++|.                           +..+++.
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            4566655 6899999999999999998888774  46777776542                           3457788


Q ss_pred             cCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhhC
Q 022923          168 LNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~~  207 (290)
                      |+|.      .+|+.++++.++ ++....    .++++.+++...|+.+.
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G-~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQ-IVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            8984      589998886443 343222    45689999999888664

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.13  E-value=1.4e-05  Score=68.14  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=48.2

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHH-HH--HHHHHC-CCcEEEEEeccccHhHHHhc--------CccccCc
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYEEHKSMCYSL--------NVHVLPF  175 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~-l~--~la~~~-~~v~~~~Vd~d~~~~l~~~~--------~I~~~PT  175 (290)
                      +-|...-  ..+|+|+|+++.+||..|+.|... +.  ++++.+ .++.-++||.++.+++...|        +.-|+|+
T Consensus        28 ea~~~Ak--~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl  105 (163)
T PF03190_consen   28 EALEKAK--KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL  105 (163)
T ss_dssp             HHHHHHH--HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred             HHHHHHH--hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence            3444443  468999999999999999999863 32  455444 35888999999999998888        7889999


Q ss_pred             eEEEeCCC
Q 022923          176 FRFYRGAH  183 (290)
Q Consensus       176 ~~~~~~G~  183 (290)
                      .+|+....
T Consensus       106 ~vfltPdg  113 (163)
T PF03190_consen  106 TVFLTPDG  113 (163)
T ss_dssp             EEEE-TTS
T ss_pred             eEEECCCC
Confidence            99886543

; PDB: 3IRA_A.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.12  E-value=6.8e-05  Score=61.39  Aligned_cols=104  Identities=15%  Similarity=0.209  Sum_probs=79.5

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCc-eEEE
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF-FRFY  179 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT-~~~~  179 (290)
                      ..+++..+.++++....++.|+|-|.-+|-+.|.++...+.+++++..+ ..++.||+++-+++.+.|.+. -|. ++||
T Consensus         3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF   81 (133)
T PF02966_consen    3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF   81 (133)
T ss_dssp             EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred             cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence            4677888999999988899999999999999999999999999999877 689999999999999999999 775 6666


Q ss_pred             eCCCceeeeecCCc--------cCHHHHHHHHHhh
Q 022923          180 RGAHGRVCSFSCTN--------ATIKKFKDALAKH  206 (290)
Q Consensus       180 ~~G~~~v~~~~~g~--------~~~~~l~~~L~k~  206 (290)
                      -+++-....+..|+        .+.++|++.++-.
T Consensus        82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i  116 (133)
T PF02966_consen   82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI  116 (133)
T ss_dssp             ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred             ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence            56652223332222        3467777777643

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.12  E-value=1.2e-05  Score=57.47  Aligned_cols=67  Identities=19%  Similarity=0.338  Sum_probs=47.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc----CccccCceEEEeCCCceeeeecCCccCHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL----NVHVLPFFRFYRGAHGRVCSFSCTNATIKK  198 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~----~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~  198 (290)
                      ++.|+++||++|+.+...+.+.     ++.+..+|++.+....+.+    ++..+|++++  +|+ .+     ++.+.++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~-~i-----~g~~~~~   68 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE-HL-----SGFRPDK   68 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE-EE-----ecCCHHH
Confidence            5779999999999998888763     5777788887765544443    6899999976  343 22     3456666


Q ss_pred             HHHH
Q 022923          199 FKDA  202 (290)
Q Consensus       199 l~~~  202 (290)
                      |+++
T Consensus        69 l~~~   72 (73)
T cd02976          69 LRAL   72 (73)
T ss_pred             HHhh
Confidence            6654

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.12  E-value=3e-05  Score=67.65  Aligned_cols=88  Identities=8%  Similarity=0.006  Sum_probs=64.8

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .+|+++|+|| ++||+.|....+.+.++.+++.  ++.++.|+.|.                         +..+++.|+
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            5789999999 9999999999999999998873  57777776553                         346788899


Q ss_pred             c----ccc--CceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          170 V----HVL--PFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       170 I----~~~--PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      +    .++  |+.++++.++ ++....    ..+++.+++.+.|+..
T Consensus       110 v~~~~~g~~~r~tfIID~~G-~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQG-IIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCcccCCceeeEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            8    356  8888885332 333221    2447888888887654

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=1.2e-05  Score=64.60  Aligned_cols=82  Identities=21%  Similarity=0.358  Sum_probs=61.9

Q ss_pred             CCHhHHHHHHHh-cCCCeEEEEEeC--------CCChHHHHHHHHHHHHHHHCC-CcEEEEEeccc-------cHhHHHh
Q 022923          105 ASAQDLVESLWH-AGDKLVVVDFFS--------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS  167 (290)
Q Consensus       105 ~s~~~f~~~l~~-~~~k~vlV~FyA--------~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~-------~~~l~~~  167 (290)
                      .-.++|.+.+.+ .+++.++|+|++        +||+.|.+..|.+.+..+..+ ++.|+.|++.+       +..+-..
T Consensus        10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d   89 (128)
T KOG3425|consen   10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD   89 (128)
T ss_pred             chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence            334677777763 256669999995        699999999999998888664 69999999864       3345566


Q ss_pred             cCc-cccCceEEEeCCCcee
Q 022923          168 LNV-HVLPFFRFYRGAHGRV  186 (290)
Q Consensus       168 ~~I-~~~PT~~~~~~G~~~v  186 (290)
                      .++ .++||++-|+++.++.
T Consensus        90 ~~~lt~vPTLlrw~~~~~rL  109 (128)
T KOG3425|consen   90 PGILTAVPTLLRWKRQPQRL  109 (128)
T ss_pred             CCceeecceeeEEcCccccc
Confidence            677 9999999997543343

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.07  E-value=1.8e-05  Score=64.62  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             CCCeEEEEEeCCCChH-HHHHHHHHHHHHHHCC-----CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMNP-----DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~-Ck~~~p~l~~la~~~~-----~v~~~~Vd~d  159 (290)
                      .+++++|+||++||++ |....+.+.++.+++.     ++.++.|..|
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            5789999999999997 9999999999998874     3888888765

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK15000 peroxidase; Provisional

Probab=98.06  E-value=3e-05  Score=68.29  Aligned_cols=88  Identities=11%  Similarity=0.032  Sum_probs=64.8

Q ss_pred             CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      ++++++|+||+ +||+.|....+.+.++.+++.  ++.++.|.+|.                            ...+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            57899999999 599999999999999998874  57777777662                            224667


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      .|+|.      .+|+.++++..+ ++....    ..+++.+++.+.|+..
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G-~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANG-IVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78887      689888886332 333322    2347888888887654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.01  E-value=4.5e-05  Score=76.96  Aligned_cols=79  Identities=15%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             CCeE-EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHH
Q 022923          119 DKLV-VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK  197 (290)
Q Consensus       119 ~k~v-lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~  197 (290)
                      ++++ +-.|.+++|++|......+++++..++++..-.||.++.++++++|+|.++|++++  ||+  +. +. |..+.+
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~--~~-~~-G~~~~~  548 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ--QV-YF-GKKTIE  548 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE--EE-Ee-eCCCHH
Confidence            4555 44568999999999999999999999999999999999999999999999999988  564  32 22 667999


Q ss_pred             HHHHHH
Q 022923          198 KFKDAL  203 (290)
Q Consensus       198 ~l~~~L  203 (290)
                      ++.++|
T Consensus       549 ~~~~~~  554 (555)
T TIGR03143       549 EMLELI  554 (555)
T ss_pred             HHHHhh
Confidence            988875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.00  E-value=2.7e-05  Score=67.80  Aligned_cols=41  Identities=7%  Similarity=0.143  Sum_probs=36.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d  159 (290)
                      .+|++||.|||+||+.|++ .+.|+++.++|.  ++.++.+.|+
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            5799999999999999975 889999999985  5899999884

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.99  E-value=3.8e-05  Score=62.40  Aligned_cols=42  Identities=24%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEecc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d  159 (290)
                      .+++++|+|| +.||+.|....+.+.++.+++  .++.|+.|..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5889999999 789999999999999999886  45888888765

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.93  E-value=5e-05  Score=68.47  Aligned_cols=81  Identities=19%  Similarity=0.311  Sum_probs=61.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEE-----------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-----------------------------------------  156 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~V-----------------------------------------  156 (290)
                      +++.+++.|.-+.|++|+++.+.+.++.+.  ++++..+                                         
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~  183 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS  183 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence            567889999999999999999999887542  2222211                                         


Q ss_pred             ---eccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          157 ---NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       157 ---d~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                         +++++.++++++||+++|||+ |.||+  +.   .|..+.++|.++|++.
T Consensus       184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~--~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        184 CDVDIADHYALGVQFGVQGTPAIV-LSNGT--LV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             ccchHHHhHHHHHHcCCccccEEE-EcCCe--Ee---eCCCCHHHHHHHHHHc
Confidence               223466789999999999999 66776  22   3778999999998864

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.92  E-value=0.0002  Score=54.75  Aligned_cols=94  Identities=19%  Similarity=0.235  Sum_probs=72.3

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      .+|++.+++...+  ..++.++|-|+.++|+   .....+.++++.+. ++.|+.++   +.++++++++.. |++++|+
T Consensus         2 ~~i~s~~~l~~~~--~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~   72 (97)
T cd02981           2 KELTSKEELEKFL--DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFK   72 (97)
T ss_pred             eecCCHHHHHHHh--ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeC
Confidence            4677888888866  4688899999999998   46678888988885 68888776   567788888764 9999998


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHh
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      +.......|. |..+.+.|.+||..
T Consensus        73 ~~~~~~~~y~-g~~~~~~l~~fi~~   96 (97)
T cd02981          73 PFEEEPVEYD-GEFTEESLVEFIKD   96 (97)
T ss_pred             CcccCCccCC-CCCCHHHHHHHHHh
Confidence            7543445555 66778999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.91  E-value=8e-05  Score=74.41  Aligned_cols=94  Identities=13%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      ++..+.+..-.+..-+..|+++.|++|......+++++..+++|.+-.||..++++++++|+|.++|++++  ||+ .+ 
T Consensus       105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~-  180 (517)
T PRK15317        105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE-EF-  180 (517)
T ss_pred             HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc-EE-
Confidence            34444454323444588899999999999999999999999999999999999999999999999999965  554 22 


Q ss_pred             eecCCccCHHHHHHHHHhhC
Q 022923          188 SFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k~~  207 (290)
                        ..|..+.++|.+.+.+..
T Consensus       181 --~~g~~~~~~~~~~~~~~~  198 (517)
T PRK15317        181 --GQGRMTLEEILAKLDTGA  198 (517)
T ss_pred             --EecCCCHHHHHHHHhccc
Confidence              227788889988887653

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.90  E-value=0.00042  Score=56.96  Aligned_cols=109  Identities=15%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCC--CCh-HH-HHHHHHHHHHHHHCC-C-cEEEEEeccccHhHHHhcCcc-
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSP--GCG-GC-KALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVH-  171 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~--WC~-~C-k~~~p~l~~la~~~~-~-v~~~~Vd~d~~~~l~~~~~I~-  171 (290)
                      +.++++++.+.+++...  .++..+|-|.-.  -|. .+ ..+...+.+++++|. + +.|+.+|.+++..+.+.|||. 
T Consensus         2 ~~~~~l~~~~~~~~~C~--~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~   79 (130)
T cd02983           2 PEIIELTSEDVFEETCE--EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG   79 (130)
T ss_pred             CceEEecCHHHHHhhcc--CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence            57889999888888873  456777777532  132 23 456778899999985 4 899999999999999999995 


Q ss_pred             -ccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCCC
Q 022923          172 -VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR  210 (290)
Q Consensus       172 -~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~  210 (290)
                       .+|+++++...++ ......|..+.+.+.+|+++++.+.
T Consensus        80 ~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gk  118 (130)
T cd02983          80 FGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGR  118 (130)
T ss_pred             cCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCC
Confidence             4999999977543 2222347789999999999998553

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.90  E-value=7.7e-05  Score=61.14  Aligned_cols=39  Identities=33%  Similarity=0.722  Sum_probs=32.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEE
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV  156 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~V  156 (290)
                      ..+.+++.|+.++|++|+.+.|.+.++..+++++.+...
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~   42 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK   42 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence            467899999999999999999999998888776544443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.89  E-value=3.5e-05  Score=67.92  Aligned_cols=106  Identities=19%  Similarity=0.369  Sum_probs=86.8

Q ss_pred             CeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .|.++++..+|.+.+... +.-.++|+.|-+.-..|-.+...+.-|+.+||-++|.+|-.. +-....+|...++|+++|
T Consensus       139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP~Lli  217 (273)
T KOG3171|consen  139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLPTLLI  217 (273)
T ss_pred             eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCceEEE
Confidence            689999999999999743 456788999999999999999999999999999999999844 456688999999999999


Q ss_pred             EeCCCceeeee------cCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSF------SCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~------~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|. .+..|      ........++..||+++-
T Consensus       218 YkgGe-LIgNFv~va~qlgedffa~dle~FL~e~g  251 (273)
T KOG3171|consen  218 YKGGE-LIGNFVSVAEQLGEDFFAGDLESFLNEYG  251 (273)
T ss_pred             eeCCc-hhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence            99997 22222      123356677888888774

>PRK13189 peroxiredoxin; Provisional

Probab=97.86  E-value=0.00012  Score=65.60  Aligned_cols=88  Identities=5%  Similarity=0.007  Sum_probs=61.8

Q ss_pred             CCC-eEEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------------cHhHHHh
Q 022923          118 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------------HKSMCYS  167 (290)
Q Consensus       118 ~~k-~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------------~~~l~~~  167 (290)
                      .++ .+|+.||++||+.|....+.+.++.++|  .++.++.|.+|.                           ...+++.
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            456 4556788999999999999999998887  357777776652                           2346778


Q ss_pred             cCcc-------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          168 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       168 ~~I~-------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      |++.       .+|+.++++..+ ++....    ..+++.+++...|+.+
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKG-IIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8875       467777775332 343322    2567888888888755

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.84  E-value=0.00016  Score=66.28  Aligned_cols=87  Identities=9%  Similarity=0.001  Sum_probs=64.0

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      +++++|++|| ++||+.|....+.+.++.+++.  ++.++.|.+|.                            +..+++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            4678888888 8999999999999999988873  56777776553                            235788


Q ss_pred             hcCcc-----ccCceEEEe-CCCceeeee----cCCccCHHHHHHHHHhh
Q 022923          167 SLNVH-----VLPFFRFYR-GAHGRVCSF----SCTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~-----~~PT~~~~~-~G~~~v~~~----~~g~~~~~~l~~~L~k~  206 (290)
                      .||+.     ..|+.++++ +|+  +...    ...+++.+++.+.|+..
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~--I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGV--VKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            89985     589988886 444  3221    13457888888888754

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.81  E-value=0.0001  Score=56.01  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=55.2

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCc--cccCceEEEeCCCceeeeecCCccCH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNV--HVLPFFRFYRGAHGRVCSFSCTNATI  196 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I--~~~PT~~~~~~G~~~v~~~~~g~~~~  196 (290)
                      ++.|..+||++|++....|+++..+++++.+..+|++.+    .++.+.++-  ..+|++++  +|+  ..    |+  .
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~--~i----gG--~   71 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK--HV----GG--C   71 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE--Ee----cC--H
Confidence            677999999999999999999987777788888888743    356666663  78999843  665  21    22  3


Q ss_pred             HHHHHHHHhhC
Q 022923          197 KKFKDALAKHT  207 (290)
Q Consensus       197 ~~l~~~L~k~~  207 (290)
                      ++|.++++++.
T Consensus        72 ~dl~~~~~~~~   82 (86)
T TIGR02183        72 TDFEQLVKENF   82 (86)
T ss_pred             HHHHHHHHhcc
Confidence            66777777654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.78  E-value=0.00016  Score=63.72  Aligned_cols=86  Identities=7%  Similarity=0.039  Sum_probs=59.8

Q ss_pred             Ce-EEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------------cHhHHHhcC
Q 022923          120 KL-VVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYSLN  169 (290)
Q Consensus       120 k~-vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~~~  169 (290)
                      +. +|+.||++||+.|....+.+.++.+++.  ++.++.|++|.                           +..+++.|+
T Consensus        26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg  105 (203)
T cd03016          26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG  105 (203)
T ss_pred             CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence            54 5668999999999999999999998874  58888887663                           235678888


Q ss_pred             cc----ccC----ceEEEeCCCceeeeecC----CccCHHHHHHHHHhh
Q 022923          170 VH----VLP----FFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH  206 (290)
Q Consensus       170 I~----~~P----T~~~~~~G~~~v~~~~~----g~~~~~~l~~~L~k~  206 (290)
                      +.    +.|    +.++++.. +++.....    .+++.+++.+.|+++
T Consensus       106 ~~~~~~~~~~~~r~~fiID~~-G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         106 MIDPDAGSTLTVRAVFIIDPD-KKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             CccccCCCCceeeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            76    334    45566422 23433321    257788888888765

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.78  E-value=0.00019  Score=64.00  Aligned_cols=88  Identities=8%  Similarity=0.042  Sum_probs=63.5

Q ss_pred             CCCe-EEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------------cHhHHHh
Q 022923          118 GDKL-VVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------------HKSMCYS  167 (290)
Q Consensus       118 ~~k~-vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------------~~~l~~~  167 (290)
                      .++. ||+.||++||+.|....+.+.++.++|  .++.++.|++|.                           +..+++.
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            3555 567999999999999999999999988  357888887663                           2246778


Q ss_pred             cCcc-------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          168 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       168 ~~I~-------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      |++.       .+|+.++++..+ ++....    ..+++.+++.+.|+..
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG-~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKG-TIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCC-EEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8873       679988886433 232221    2457888888888754

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.77  E-value=7.5e-05  Score=65.17  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcE---------------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ---------------------------------------------  152 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~---------------------------------------------  152 (290)
                      ..+..++.|..+.|++|+++.+.+.+.   .+++.                                             
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~  152 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA  152 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence            468899999999999999999988761   11221                                             


Q ss_pred             EEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          153 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       153 ~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      ....+++++..++++++|+++|+|+ |.+|+ .+    .|..+.++|.++|
T Consensus       153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~-~~----~G~~~~~~l~~~L  197 (197)
T cd03020         153 SCDNPVAANLALGRQLGVNGTPTIV-LADGR-VV----PGAPPAAQLEALL  197 (197)
T ss_pred             ccCchHHHHHHHHHHcCCCcccEEE-ECCCe-Ee----cCCCCHHHHHhhC
Confidence            1222333466789999999999997 77776 22    2666777777653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.74  E-value=0.00026  Score=63.09  Aligned_cols=88  Identities=8%  Similarity=0.004  Sum_probs=62.3

Q ss_pred             CCCeEE-EEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------------cHhHHHh
Q 022923          118 GDKLVV-VDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------------HKSMCYS  167 (290)
Q Consensus       118 ~~k~vl-V~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------------~~~l~~~  167 (290)
                      .+|.++ +.||++||+.|....+.|.++.+++  .++.++.|++|.                           +..+++.
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            456555 4889999999999999999999988  357888887763                           2346677


Q ss_pred             cCcc-------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          168 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       168 ~~I~-------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      |++.       .+|+.++++..+ ++....    ..+++.+++.+.|+.+
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKG-TVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8863       367777775333 333321    2457899998888765

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.64  E-value=0.00013  Score=53.90  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=42.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----hHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|+++||++|+.+...+.++..   .+.++.+|.+.+.     .+.+..++..+|++  |.+|+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            577999999999999999998865   4577777776542     35566788899996  44665

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.62  E-value=0.00045  Score=69.09  Aligned_cols=92  Identities=12%  Similarity=0.272  Sum_probs=74.0

Q ss_pred             HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeee
Q 022923          109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS  188 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~  188 (290)
                      +..+.+..-.+..-+-.|+++.|++|......+++++..+++|..-.+|..++++++++|+|.++|++++  ||+ .+  
T Consensus       107 ~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~--  181 (515)
T TIGR03140       107 GIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE-EF--  181 (515)
T ss_pred             HHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc-EE--
Confidence            3444444323455588899999999999999999999999999999999999999999999999999976  554 22  


Q ss_pred             ecCCccCHHHHHHHHHhh
Q 022923          189 FSCTNATIKKFKDALAKH  206 (290)
Q Consensus       189 ~~~g~~~~~~l~~~L~k~  206 (290)
                       ..|..+.+++.+.+.+.
T Consensus       182 -~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       182 -HNGRMDLAELLEKLEET  198 (515)
T ss_pred             -EecCCCHHHHHHHHhhc
Confidence             22778888888887665

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=97.59  E-value=0.00041  Score=65.35  Aligned_cols=103  Identities=13%  Similarity=0.177  Sum_probs=73.2

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHC---CCcEEEEEeccccHhHHHhcCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALH------PKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNV  170 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~------p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I  170 (290)
                      .+..++. .+|.+.+.  +-+..+|+||.+--. -+...      ..+-+|+.+.   .++.|+.||..++..+++++|+
T Consensus        35 RVi~Lne-KNfk~~lK--kyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv  110 (383)
T PF01216_consen   35 RVIDLNE-KNFKRALK--KYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV  110 (383)
T ss_dssp             -CEEE-T-TTHHHHHH--H-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred             ceEEcch-hHHHHHHH--hhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence            4666655 68999884  467888899988643 22222      2233555442   5799999999999999999999


Q ss_pred             cccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       171 ~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ...+++.+|++|.  ++.|. |.++++.|.+||...+..
T Consensus       111 ~E~~SiyVfkd~~--~IEyd-G~~saDtLVeFl~dl~ed  146 (383)
T PF01216_consen  111 EEEGSIYVFKDGE--VIEYD-GERSADTLVEFLLDLLED  146 (383)
T ss_dssp             -STTEEEEEETTE--EEEE--S--SHHHHHHHHHHHHSS
T ss_pred             cccCcEEEEECCc--EEEec-CccCHHHHHHHHHHhccc
Confidence            9999999999986  88888 999999999999999854

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.58  E-value=0.00046  Score=62.91  Aligned_cols=84  Identities=13%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------  158 (290)
                      ..+.+|+.|.-+.|++|+++.+.+.++.+. ++|++..+.+                                       
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            467789999999999999999988876554 2333322210                                       


Q ss_pred             -----------cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923          159 -----------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA  204 (290)
Q Consensus       159 -----------d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~  204 (290)
                                 ++|..+.+++||+++|+|++-+ |++.+.... |..+.++|.+.|.
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d-~~G~~~~v~-G~~~~~~L~~~l~  249 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMD-KDGTLQQVV-GLPDPAQLAEIMG  249 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEEC-CCCCEEEec-CCCCHHHHHHHhC
Confidence                       1134477889999999999884 333333333 7778888888764

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.57  E-value=0.00052  Score=60.13  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=61.9

Q ss_pred             CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .++.++|+||+ +||+.|....+.+.++.+++.  ++.++.|++|.                            ..++++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            47899999994 889999999999999988875  57888887652                            224677


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      .|++.      .+|+.++++... ++....    ..+++.+++.+.|+..
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G-~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKG-MLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            88885      367777775443 333322    2346777777776644

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.56  E-value=0.00036  Score=48.97  Aligned_cols=54  Identities=20%  Similarity=0.345  Sum_probs=42.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|..+||++|+.....|++.     ++.+-.+|++++++.    .+..+...+|++++  +|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence            5679999999999999888554     588888898876543    33459999999886  554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.49  E-value=0.00057  Score=49.87  Aligned_cols=66  Identities=14%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc---CccccCceEEEeCCCceeeeecCCccCHHHHH
Q 022923          124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK  200 (290)
Q Consensus       124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~---~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~  200 (290)
                      ..|..++|+.|++....|++.     ++.|-.+|+++++...+.+   +...+|++++  +|+..+     ++.+.++|.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~~~-----~G~~~~~~~   69 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDLSW-----SGFRPDKLK   69 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCcEE-----eccCHHHHH
Confidence            467889999999999988763     6888888988877665554   8889999755  443222     455666665


Q ss_pred             H
Q 022923          201 D  201 (290)
Q Consensus       201 ~  201 (290)
                      +
T Consensus        70 ~   70 (72)
T TIGR02194        70 A   70 (72)
T ss_pred             h
Confidence            4

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.36  E-value=0.0022  Score=53.15  Aligned_cols=81  Identities=21%  Similarity=0.356  Sum_probs=60.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccc----------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEE----------------------------------  160 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~----------------------------------  160 (290)
                      ..+.+|+.|+..-|++|+.+.+.+.++.+++   +++.|...++-.                                  
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4678999999999999999999999998887   347666665310                                  


Q ss_pred             ----------------------------------cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          161 ----------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       161 ----------------------------------~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                                                        ...++++++|.++|||++  ||+ .+    .+..+.+++.+.|++
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~-~~----~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK-YV----VGPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC-EE----ETTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE-Ee----CCCCCHHHHHHHHcC
Confidence                                              011345679999999998  776 22    368899999999875

...

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.36  E-value=0.0028  Score=63.98  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=83.3

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe-CCCcee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR-GAHGRV  186 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~-~G~~~v  186 (290)
                      +++.+.+..-.+...++.|+.+.|..|..+...++++++.-+.+++...|..++.+++++|+|...|+|.+++ +|+..-
T Consensus       355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~  434 (555)
T TIGR03143       355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTG  434 (555)
T ss_pred             HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccc
Confidence            4466666544455577788898999999999999999988788999889988899999999999999999995 443212


Q ss_pred             eeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHh
Q 022923          187 CSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA  229 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~  229 (290)
                      +.|. |-..-.+|..||...+...   ++...++++..+.+..
T Consensus       435 i~f~-g~P~G~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~~  473 (555)
T TIGR03143       435 LKFH-GVPSGHELNSFILALYNAA---GPGQPLGEELLEKIKK  473 (555)
T ss_pred             eEEE-ecCccHhHHHHHHHHHHhc---CCCCCCCHHHHHHHHh
Confidence            3444 5555566666666554321   2334555555444443

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.33  E-value=0.00066  Score=47.99  Aligned_cols=54  Identities=19%  Similarity=0.283  Sum_probs=40.3

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|+++||++|+.+...+.+..     +.+..+|++.+.++    .+..+...+|++  |.+|+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~   59 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            56789999999999999988774     77888888876543    334566777866  34664

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.32  E-value=0.00075  Score=50.24  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=43.5

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc---HhHHHhcCccccCceEEEeCCC
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~---~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.-++.|+.+||++|++....|++.     ++.+-.+|++++   ..+.+..+...+|.+++  +|+
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~   66 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK   66 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence            33446779999999999999988754     577777787755   34555678899999853  665

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.29  E-value=0.0026  Score=55.76  Aligned_cols=108  Identities=17%  Similarity=0.213  Sum_probs=80.5

Q ss_pred             CCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923           97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .-+.|.+|+-.+-..++...+.+-.|||+.|...-+-|+-+...++.++.+|++++|+++=.+..   ...|-=...||+
T Consensus        89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl  165 (240)
T KOG3170|consen   89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTL  165 (240)
T ss_pred             cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeE
Confidence            34578888776444444445667789999999999999999999999999999999999875543   234666889999


Q ss_pred             EEEeCCC--ceeeee-cCC--ccCHHHHHHHHHhhC
Q 022923          177 RFYRGAH--GRVCSF-SCT--NATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~--~~v~~~-~~g--~~~~~~l~~~L~k~~  207 (290)
                      ++|..|.  +.+++. ..|  ..+.+++..+|-+.-
T Consensus       166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag  201 (240)
T KOG3170|consen  166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG  201 (240)
T ss_pred             EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence            9998886  222222 223  367888988887654

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.29  E-value=0.0018  Score=48.74  Aligned_cols=72  Identities=11%  Similarity=0.137  Sum_probs=53.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHH---HhcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~---~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      +..|..+||++|+.....|++     .++.|-.+|++++++..   +..+...+|++++  ++. .+     .+.+.++|
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~-~~-----~Gf~~~~l   69 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL-SW-----SGFRPDMI   69 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE-EE-----ecCCHHHH
Confidence            567889999999999988865     36889899998777543   3457789999865  432 22     46778888


Q ss_pred             HHHHHhhC
Q 022923          200 KDALAKHT  207 (290)
Q Consensus       200 ~~~L~k~~  207 (290)
                      .+.+..+.
T Consensus        70 ~~~~~~~~   77 (81)
T PRK10329         70 NRLHPAPH   77 (81)
T ss_pred             HHHHHhhh
Confidence            88877654

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.24  E-value=0.0072  Score=49.08  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHH-H---HCCCcEEEEEecc-----ccHhHHHhcCc--cccCce
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-E---MNPDVQFLQVNYE-----EHKSMCYSLNV--HVLPFF  176 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la-~---~~~~v~~~~Vd~d-----~~~~l~~~~~I--~~~PT~  176 (290)
                      -+|+..+  .+.+.++|.|=...=  --.-...+.+++ +   .-+++-++.|.+.     +|.+|+++|+|  ..+|.+
T Consensus        12 ~tFdKvi--~kf~~~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~   87 (126)
T PF07912_consen   12 LTFDKVI--PKFKYVLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI   87 (126)
T ss_dssp             THHHHHG--GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred             eehhhee--ccCceEEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence            3788888  467999999975442  222334566666 3   3467899999875     58899999999  679999


Q ss_pred             EEEeCCCceeeeec-CCccCHHHHHHHHHhhCC
Q 022923          177 RFYRGAHGRVCSFS-CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       177 ~~~~~G~~~v~~~~-~g~~~~~~l~~~L~k~~~  208 (290)
                      .+|..|....+.+. .+..+.++|+.|+.++.+
T Consensus        88 ~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   88 YLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             EEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             EEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence            99997766777772 267899999999999864

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.24  E-value=0.0011  Score=49.74  Aligned_cols=80  Identities=11%  Similarity=0.128  Sum_probs=59.0

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      ++.|..+.|+-|......+.++.... .+.+-.||+++++++..+|+. .+|.+.+-..++........+..+.+++.++
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~   79 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW   79 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence            67899999999999999999876554 499999999999999999995 7998666421111111222367899999988


Q ss_pred             HH
Q 022923          203 LA  204 (290)
Q Consensus       203 L~  204 (290)
                      |+
T Consensus        80 L~   81 (81)
T PF05768_consen   80 LE   81 (81)
T ss_dssp             HH
T ss_pred             hC
Confidence            75

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PHA03050 glutaredoxin; Provisional

Probab=97.14  E-value=0.0012  Score=52.50  Aligned_cols=59  Identities=12%  Similarity=0.125  Sum_probs=41.4

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-cc----HhHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EH----KSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-~~----~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|..+||++|++....|++..-.++.+..+.||-. ..    ..+.+..|.+.+|++++  +|+
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~   78 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT   78 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence            6679999999999999999887554444555555421 12    34566678889999833  665

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.05  E-value=0.0014  Score=48.45  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=39.4

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|+.+||++|++....|++.     ++.+-.+|++.+++.    .+..+...+|+++  .+|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~   58 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDV   58 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence            3568899999999999999864     466677777766544    3445788899973  3665

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.05  E-value=0.0018  Score=50.55  Aligned_cols=54  Identities=17%  Similarity=0.250  Sum_probs=37.3

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh-------HHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-------MCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~-------l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|..+||++|++....|.+.     ++.+..+|+|++++       +.+..+...+|.+  |-+|+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~   70 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK   70 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence            5568999999999999888766     35455566654422       3344567889987  44665

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.93  E-value=0.0031  Score=45.73  Aligned_cols=54  Identities=13%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHH----HhcCcc-ccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVH-VLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~----~~~~I~-~~PT~~~~~~G~  183 (290)
                      ++.|..+||++|+.....|++.     ++.+..+|++.+++..    +.++.. .+|+++  .+|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence            4678899999999999888764     6777888888765443    345666 899763  3665

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.92  E-value=0.0032  Score=45.85  Aligned_cols=54  Identities=17%  Similarity=0.338  Sum_probs=41.2

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|+.+||+.|++....|++.     ++.+-.+|+++++.    +.+..+-..+|++++  +|+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~   60 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK   60 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            5568899999999999888874     67788888887654    555567788888833  665

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=96.84  E-value=0.014  Score=46.61  Aligned_cols=97  Identities=12%  Similarity=0.045  Sum_probs=69.0

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH---CCC-cEEEEEeccccHhHHHhcCccc--cCceEEEeC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPD-VQFLQVNYEEHKSMCYSLNVHV--LPFFRFYRG  181 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~---~~~-v~~~~Vd~d~~~~l~~~~~I~~--~PT~~~~~~  181 (290)
                      ++.....  ..+.+..+.||  --..-..+...+.+++++   +.+ +.|+.+|.++.....+.||+..  +|.+.+...
T Consensus         7 e~~~~~~--~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~   82 (111)
T cd03072           7 ENAEELT--EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSF   82 (111)
T ss_pred             ccHHHHh--cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcc
Confidence            3444444  34555555566  223346788899999999   854 9999999998877999999997  999999865


Q ss_pred             CCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          182 AHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       182 G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ..........+..+.+.|.+|+++++.
T Consensus        83 ~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          83 RHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             hhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            431222212356789999999998863

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.84  E-value=0.0048  Score=47.17  Aligned_cols=58  Identities=22%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             CCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923          119 DKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       119 ~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~  183 (290)
                      +.+|+|+-..    +||++|++....|.+.     ++.|..+|++++.++    .+..+-..+|.+  |.+|+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~   72 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE   72 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence            4566665443    7999999999888876     367777787766544    444577889987  33665

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.83  E-value=0.0037  Score=46.48  Aligned_cols=58  Identities=22%  Similarity=0.423  Sum_probs=43.1

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEec--cc------------------------------cHhHHHhcC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNY--EE------------------------------HKSMCYSLN  169 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~--d~------------------------------~~~l~~~~~  169 (290)
                      ++.|+.+.|++|..+.+.+.++.+.++ ++.+....+  ..                              +..++.+++
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            468999999999999999999975543 455554433  11                              123567889


Q ss_pred             ccccCceEEEe
Q 022923          170 VHVLPFFRFYR  180 (290)
Q Consensus       170 I~~~PT~~~~~  180 (290)
                      |.++||+++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999999874

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.83  E-value=0.0069  Score=47.12  Aligned_cols=65  Identities=20%  Similarity=0.173  Sum_probs=43.5

Q ss_pred             HHHHHHHhcCCCeEEEEEe----CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEe
Q 022923          109 DLVESLWHAGDKLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYR  180 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~Fy----A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~  180 (290)
                      ...+.+   .+..|+|+-.    .+||++|++....|.+.     ++.|..+|+++++++    .+..+...+|.++  .
T Consensus         4 ~v~~~i---~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i   73 (97)
T TIGR00365         4 RIKEQI---KENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--V   73 (97)
T ss_pred             HHHHHh---ccCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--E
Confidence            344444   3455666554    38999999999988876     567778888766543    3445666778763  3


Q ss_pred             CCC
Q 022923          181 GAH  183 (290)
Q Consensus       181 ~G~  183 (290)
                      +|+
T Consensus        74 ~g~   76 (97)
T TIGR00365        74 KGE   76 (97)
T ss_pred             CCE
Confidence            665

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=96.80  E-value=0.0048  Score=54.35  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEE
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQV  156 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~V  156 (290)
                      +++.||.|+.-.|+||+.+.+.+   ..+.+.++ ++.|..+
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~   78 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY   78 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence            56779999999999999999876   77788775 4555443

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=96.77  E-value=0.018  Score=46.03  Aligned_cols=74  Identities=9%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             ChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccc----cCceEEEeCCCceeeeecCCcc-CHHHHHHHH
Q 022923          131 CGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRGAHGRVCSFSCTNA-TIKKFKDAL  203 (290)
Q Consensus       131 C~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~----~PT~~~~~~G~~~v~~~~~g~~-~~~~l~~~L  203 (290)
                      -..-..+...+.+++++++  .+.|+.+|.++...+.+.||+..    +|+++++..+. .-.. ..+.. +.+.|.+|+
T Consensus        30 ~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~-~~~~~~t~e~i~~F~  107 (111)
T cd03073          30 PKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYV-MEEEFSDVDALEEFL  107 (111)
T ss_pred             hhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccC-CCcccCCHHHHHHHH
Confidence            3455678889999999997  59999999998888899999985    99999986432 1111 22556 889999999


Q ss_pred             Hhh
Q 022923          204 AKH  206 (290)
Q Consensus       204 ~k~  206 (290)
                      ++.
T Consensus       108 ~~f  110 (111)
T cd03073         108 EDF  110 (111)
T ss_pred             HHh
Confidence            875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK10824 glutaredoxin-4; Provisional

Probab=96.66  E-value=0.0058  Score=49.27  Aligned_cols=67  Identities=12%  Similarity=0.267  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc-CccccCce-EEEeCC
Q 022923          109 DLVESLWHAGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL-NVHVLPFF-RFYRGA  182 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~-~I~~~PT~-~~~~~G  182 (290)
                      ..++.+   .+.+|+|+--.    |||++|++....|.++     ++.+..+|++++.++.+.+ .+.+.||+ .+|-+|
T Consensus         7 ~v~~~I---~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G   78 (115)
T PRK10824          7 KIQRQI---AENPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWVDG   78 (115)
T ss_pred             HHHHHH---hcCCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECC
Confidence            344455   34556665443    6999999999988876     3555556776665544332 22345553 345577


Q ss_pred             C
Q 022923          183 H  183 (290)
Q Consensus       183 ~  183 (290)
                      +
T Consensus        79 ~   79 (115)
T PRK10824         79 E   79 (115)
T ss_pred             E
Confidence            6

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.63  E-value=0.054  Score=42.12  Aligned_cols=98  Identities=13%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +..|++.+++++.+.. .+..++|-|+..--.   .....+.+++..+ .++.|+...   +.++...+++. .|.+++|
T Consensus         2 v~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~   73 (102)
T cd03066           2 VEIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY   73 (102)
T ss_pred             ceEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence            4678888889888831 455666666655444   3556788888888 678886544   45677888775 7999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      ++.......|..|..+.+.|.+||..+
T Consensus        74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          74 EPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            763323344534677999999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.61  E-value=0.0076  Score=43.68  Aligned_cols=54  Identities=13%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh---HHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~---l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|..+||+.|.+....|.+.     ++.+..+|++++..   +.+..+...+|.+  |.+|+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~   59 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCE
Confidence            5678999999999998888753     57777778776542   3344688899997  33665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.015  Score=54.26  Aligned_cols=109  Identities=15%  Similarity=0.236  Sum_probs=80.1

Q ss_pred             CCCeeEeCCHhHHHHHHHh-cCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCC---------CcEEEEEeccccHh
Q 022923           98 QPNMREVASAQDLVESLWH-AGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEHKS  163 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~-~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~---------~v~~~~Vd~d~~~~  163 (290)
                      ...++.+++ +.|...+.. ..+-.++|.|.|    ..|.-|+.....+.-++..+.         .+-|..||.|+.++
T Consensus        39 ~~~VI~~n~-d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~  117 (331)
T KOG2603|consen   39 ESGVIRMND-DKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ  117 (331)
T ss_pred             CCCeEEecC-cchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence            345666666 467777752 234457777876    479999999999998888641         27799999999999


Q ss_pred             HHHhcCccccCceEEEeCCCcee------eeecCCccCHHHHHHHHHhhCC
Q 022923          164 MCYSLNVHVLPFFRFYRGAHGRV------CSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       164 l~~~~~I~~~PT~~~~~~G~~~v------~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +.++++++.+|++++|...++..      .... -+..++++.+|+++...
T Consensus       118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~-~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQD-LGFEAEQIAQFVADRTK  167 (331)
T ss_pred             HHHHhcccCCCeEEEeCCCccccccCccchhhh-cchhHHHHHHHHHHhhh
Confidence            99999999999999996554222      1122 23449999999998763

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.50  E-value=0.022  Score=48.01  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCc-cCHHHHHHHHHhhC
Q 022923          137 LHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKDALAKHT  207 (290)
Q Consensus       137 ~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~-~~~~~l~~~L~k~~  207 (290)
                      ....+.++++.+. ++.|+.++   +.+++++++|.. |++++|+++.++...|. |. .+.++|.+||.++.
T Consensus         8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~-~~~~~~~~l~~fI~~~~   75 (184)
T PF13848_consen    8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYD-GDKFTPEELKKFIKKNS   75 (184)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEES-SSTTSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecc-cccCCHHHHHHHHHHhc
Confidence            4567888888886 68999887   677999999999 99999999765667776 44 79999999999986

...

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.49  E-value=0.053  Score=42.45  Aligned_cols=95  Identities=16%  Similarity=0.183  Sum_probs=65.6

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.+|++.+++.+.+.  .++.++|-|+..--.   .....+.+++..+ .++.|+...   +..+.+.+++  .|++++|
T Consensus         2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~   71 (104)
T cd03069           2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF   71 (104)
T ss_pred             ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence            456788888888773  466677766665443   4566788888888 578887654   4567888988  7888888


Q ss_pred             eC------CCceeeeecCCccCHHHHHHHHHhh
Q 022923          180 RG------AHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       180 ~~------G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +.      -......|. |..+.+.|.+||..+
T Consensus        72 ~p~~~~~k~de~~~~y~-g~~~~~~l~~fi~~~  103 (104)
T cd03069          72 RPPRLSNKFEDSSVKFD-GDLDSSKIKKFIREN  103 (104)
T ss_pred             echhhhcccCccccccc-CcCCHHHHHHHHHhh
Confidence            43      111223344 667889999999865

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.40  E-value=0.041  Score=43.27  Aligned_cols=100  Identities=14%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccc--cHhHHHhcCcc----cc
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE--HKSMCYSLNVH----VL  173 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~--~~~l~~~~~I~----~~  173 (290)
                      +..|.+..+|..++  .....|+|.|..+--..-..+ ..+.++++... .-+++.|||.+  ...||+++.|.    --
T Consensus         3 ie~i~d~KdfKKLL--RTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~   79 (112)
T cd03067           3 IEDISDHKDFKKLL--RTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK   79 (112)
T ss_pred             cccccchHHHHHHH--hhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence            34678889999999  456668887776654444443 46777777764 47999999985  78899999999    55


Q ss_pred             Cc-eEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          174 PF-FRFYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       174 PT-~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      |. +.=|+||. ...+|. -..+...+..|+..
T Consensus        80 ~~~LkHYKdG~-fHkdYd-R~~t~kSmv~FlrD  110 (112)
T cd03067          80 PVELKHYKDGD-FHTEYN-RQLTFKSMVAFLRD  110 (112)
T ss_pred             cchhhcccCCC-cccccc-chhhHHHHHHHhhC
Confidence            65 55778887 444554 45678888888764

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.18  E-value=0.0067  Score=48.28  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHH---HHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCce
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCK---ALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck---~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      +..++ .+++++.+.  .+...++ |++..|..|.   ...=.+-+|.+.+++ +..+.|+-+....|..+|++..+|++
T Consensus        11 ~~~vd-~~~ld~~l~--~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL   86 (107)
T PF07449_consen   11 WPRVD-ADTLDAFLA--APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL   86 (107)
T ss_dssp             EEEE--CCCHHHHHH--CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred             Ceeec-hhhHHHHHh--CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence            44444 456777774  3444555 5554554444   444477788888876 56667776678899999999999999


Q ss_pred             EEEeCCC
Q 022923          177 RFYRGAH  183 (290)
Q Consensus       177 ~~~~~G~  183 (290)
                      +||++|+
T Consensus        87 vf~R~g~   93 (107)
T PF07449_consen   87 VFFRDGR   93 (107)
T ss_dssp             EEEETTE
T ss_pred             EEEECCE
Confidence            9999997

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.016  Score=43.52  Aligned_cols=66  Identities=15%  Similarity=0.306  Sum_probs=44.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----hHHHhc-CccccCceEEEeCCCceeeeecCCccCH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSL-NVHVLPFFRFYRGAHGRVCSFSCTNATI  196 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~-~I~~~PT~~~~~~G~~~v~~~~~g~~~~  196 (290)
                      ++.|--++|++|++....|.+.     ++.|..+|++.+.     +..++. +.+.+|.+++  +|+  .   .+|..+.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~--~---igg~~d~   70 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK--H---VGGCDDL   70 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE--E---EeCcccH
Confidence            5678899999999999888844     5667777766544     344455 7899998766  554  1   2244555


Q ss_pred             HHHH
Q 022923          197 KKFK  200 (290)
Q Consensus       197 ~~l~  200 (290)
                      +++.
T Consensus        71 ~~~~   74 (80)
T COG0695          71 DALE   74 (80)
T ss_pred             HHHH
Confidence            5554

>PRK10638 glutaredoxin 3; Provisional

Probab=96.11  E-value=0.018  Score=42.99  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=39.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|..+||++|++....+++.     ++.+..+|++++.+    +.+..+...+|++++  +|+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~   61 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ   61 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            5567889999999999888865     56677778876653    345557788997733  664

>PTZ00062 glutaredoxin; Provisional

Probab=95.46  E-value=0.064  Score=47.51  Aligned_cols=58  Identities=14%  Similarity=0.094  Sum_probs=38.1

Q ss_pred             CCeEEEEEe----CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHh----cCccccCceEEEeCCC
Q 022923          119 DKLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH  183 (290)
Q Consensus       119 ~k~vlV~Fy----A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~----~~I~~~PT~~~~~~G~  183 (290)
                      .++|+|+=-    .|||+.|+++...|.+.     ++.|..+|++++.++.+.    .+-..+|.+.  -+|+
T Consensus       112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~  177 (204)
T PTZ00062        112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE  177 (204)
T ss_pred             cCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence            445555433    37999999998888865     577788888876655433    3444555544  3665

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=94.38  E-value=0.093  Score=51.23  Aligned_cols=54  Identities=15%  Similarity=0.268  Sum_probs=41.0

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh---HHHh---------cCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYS---------LNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~---l~~~---------~~I~~~PT~~~~~~G~  183 (290)
                      |+.|..+||++|++....|.+.     ++.|-.||+++++.   +.++         .|.+.+|++++  +|+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~   69 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV   69 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence            6679999999999999888875     68888888887663   2222         36788999855  554

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=94.30  E-value=0.33  Score=43.86  Aligned_cols=57  Identities=21%  Similarity=0.258  Sum_probs=43.3

Q ss_pred             CeeEeCCHh--HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEec
Q 022923          100 NMREVASAQ--DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY  158 (290)
Q Consensus       100 ~v~~I~s~~--~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~  158 (290)
                      .++.+....  .+.+..  .+++|.||+|.+-.|++-..-...+++++++|.+ +.|+.|-+
T Consensus        83 ~vv~l~g~~~~~ildf~--~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI  142 (237)
T PF00837_consen   83 PVVTLDGQRSCRILDFA--KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI  142 (237)
T ss_pred             ceEeeCCCcceeHHHhc--cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence            455554432  344444  5799999999999999999999999999999987 45665543

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=0.29  Score=38.76  Aligned_cols=66  Identities=14%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-hHHH----hcCccccCceEEEeCCC
Q 022923          109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMCY----SLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-~l~~----~~~I~~~PT~~~~~~G~  183 (290)
                      .+.+.+   ...+ +|.|.-+||+.|+.+...|.++   -.+..++.+|-+++. +|-+    --+.+.+|.+++  +|+
T Consensus         6 ~v~~~i---~~~~-VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk   76 (104)
T KOG1752|consen    6 KVRKMI---SENP-VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK   76 (104)
T ss_pred             HHHHHh---hcCC-EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence            345555   2334 4459999999999988777772   224677777765443 3322    234556776544  675

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=93.96  E-value=0.028  Score=52.39  Aligned_cols=97  Identities=15%  Similarity=0.238  Sum_probs=72.6

Q ss_pred             HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEe-ccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd-~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      ...+.+..++..+|-+.||++||+.-+...|.++-....|..+....|+ ...-+++..+|++++.|++.+...--  ..
T Consensus        66 ~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~--~~  143 (319)
T KOG2640|consen   66 VLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC--PA  143 (319)
T ss_pred             HHHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecccc--ch
Confidence            3344443445678999999999999999999999888888765554443 12345678899999999999884432  33


Q ss_pred             eecCCccCHHHHHHHHHhhCC
Q 022923          188 SFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      .+ .|.++...++++..+.++
T Consensus       144 ~~-~~~r~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  144 SY-RGERDLASLVNFYTEITP  163 (319)
T ss_pred             hh-cccccHHHHHHHHHhhcc
Confidence            33 388999999999999875

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=93.90  E-value=0.11  Score=43.61  Aligned_cols=41  Identities=34%  Similarity=0.602  Sum_probs=33.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~  158 (290)
                      ..++.|+.|+...|++|+.+.+.+..+.++++ ++.|..+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence            46889999999999999999999999999885 355554443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=93.89  E-value=1.6  Score=34.28  Aligned_cols=97  Identities=16%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.+|.+.+++++.+.. .++.++|-|+..--+   .....+.+++..+ .++.|+...   +..+.+++++. .|.+++|
T Consensus         2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~   73 (107)
T cd03068           2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF   73 (107)
T ss_pred             ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence            4678888889888743 225666666655433   4566788888888 678886644   45777888876 5778888


Q ss_pred             eCCC------ceeeeecCCc-cCHHH-HHHHHHhh
Q 022923          180 RGAH------GRVCSFSCTN-ATIKK-FKDALAKH  206 (290)
Q Consensus       180 ~~G~------~~v~~~~~g~-~~~~~-l~~~L~k~  206 (290)
                      +...      .....|. |. .+.++ |.+||.++
T Consensus        74 rp~~~~~k~e~~~~~~~-~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          74 QPEKFQSKYEPKSHVLN-KKDSTSEDELKDFFKEH  107 (107)
T ss_pred             CcHHHhhhcCcceeeee-ccccchHHHHHHHHhcC
Confidence            4433      1223333 33 34444 99998764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=93.87  E-value=0.12  Score=43.53  Aligned_cols=52  Identities=21%  Similarity=0.167  Sum_probs=37.2

Q ss_pred             CCeEEEE-EeCCCChHHHHH-HHHHHHHHHHCC--Cc-EEEEEeccc---cHhHHHhcCc
Q 022923          119 DKLVVVD-FFSPGCGGCKAL-HPKICQLAEMNP--DV-QFLQVNYEE---HKSMCYSLNV  170 (290)
Q Consensus       119 ~k~vlV~-FyA~WC~~Ck~~-~p~l~~la~~~~--~v-~~~~Vd~d~---~~~l~~~~~I  170 (290)
                      +++++|+ |.+.||+.|... .+.+.+..+++.  ++ .++.|..|.   +...++++++
T Consensus        29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence            4445554 459999999998 999988888774  46 588887764   4445666665

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=93.62  E-value=0.21  Score=42.98  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=21.6

Q ss_pred             EEeCCCChHHHHHHHHHHHHHHHCCC
Q 022923          125 DFFSPGCGGCKALHPKICQLAEMNPD  150 (290)
Q Consensus       125 ~FyA~WC~~Ck~~~p~l~~la~~~~~  150 (290)
                      +|.-|.|+.|-.+.|.|.++..+|++
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~   27 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGN   27 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence            68999999999999999999999875

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=92.75  E-value=0.26  Score=41.93  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=42.2

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc---------------------ccHhHHHhcCccc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHV  172 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d---------------------~~~~l~~~~~I~~  172 (290)
                      .+++||+||| .++++.|-...-.|.+...++.  ++.++.|..|                     .+..+++.|+|..
T Consensus        29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~  107 (157)
T COG1225          29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG  107 (157)
T ss_pred             cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence            5779999999 8899999998888888777764  4777777654                     3456788888754

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=92.68  E-value=2.8  Score=32.45  Aligned_cols=85  Identities=15%  Similarity=0.153  Sum_probs=53.2

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +++.+.+..-.+...++.|..+. ..|..+...++++++.-+.+.+-..+.++           ..|++.+.++|+..-+
T Consensus         8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gI   75 (94)
T cd02974           8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGI   75 (94)
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence            44555554334444455555555 99999999999999987777665433221           4799999877742123


Q ss_pred             eecCCccCHHHHHHHHHh
Q 022923          188 SFSCTNATIKKFKDALAK  205 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k  205 (290)
                      .|. |-..=.+|..+|..
T Consensus        76 rF~-GiP~GhEf~Slila   92 (94)
T cd02974          76 RFA-GIPMGHEFTSLVLA   92 (94)
T ss_pred             EEE-ecCCchhHHHHHHH
Confidence            444 45555566666543

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.41  E-value=0.28  Score=50.40  Aligned_cols=74  Identities=14%  Similarity=0.199  Sum_probs=54.8

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHH-HH--HHHHHC-CCcEEEEEeccccHhHHHhcC--------ccccCc
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYEEHKSMCYSLN--------VHVLPF  175 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~-l~--~la~~~-~~v~~~~Vd~d~~~~l~~~~~--------I~~~PT  175 (290)
                      +-|...-  ..+|||+|....+||..|..|... ++  ++++-. .++.-++||-++-+++-+.|.        --++|-
T Consensus        34 eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL  111 (667)
T COG1331          34 EAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL  111 (667)
T ss_pred             HHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence            5666655  469999999999999999999763 32  555543 458999999998887766553        558998


Q ss_pred             eEEEe-CCC
Q 022923          176 FRFYR-GAH  183 (290)
Q Consensus       176 ~~~~~-~G~  183 (290)
                      -+|.. +|+
T Consensus       112 tVfLTPd~k  120 (667)
T COG1331         112 TVFLTPDGK  120 (667)
T ss_pred             eEEECCCCc
Confidence            66664 554

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.56  E-value=0.87  Score=40.60  Aligned_cols=39  Identities=15%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       161 ~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +..++++++|.++||+++-  |+ .+    .|..+.+++.+.|...
T Consensus       204 ~~~~a~~~gv~gTPt~~v~--~~-~~----~g~~~~~~l~~~i~~~  242 (244)
T COG1651         204 NYKLAQQLGVNGTPTFIVN--GK-LV----PGLPDLDELKAIIDEA  242 (244)
T ss_pred             HHHHHHhcCCCcCCeEEEC--Ce-ee----cCCCCHHHHHHHHHHh
Confidence            3456778899999999885  32 12    2566688888888764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=91.42  E-value=1.8  Score=43.33  Aligned_cols=106  Identities=11%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +++.+.+.. =.++|-+.++.+-|..|..+...++++++.-+.+++-..+.+           ...|+|.+.++|+..-.
T Consensus         8 ~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i   75 (517)
T PRK15317          8 TQLKQYLEL-LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGV   75 (517)
T ss_pred             HHHHHHHHh-CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence            455555543 355666666666899999999999999998877776443311           34799999987753234


Q ss_pred             eecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHh
Q 022923          188 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA  229 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~  229 (290)
                      .|. |-..-.+|..||......   -++...++++..+.+..
T Consensus        76 ~f~-g~P~g~Ef~s~i~~i~~~---~~~~~~l~~~~~~~i~~  113 (517)
T PRK15317         76 RFA-GIPMGHEFTSLVLALLQV---GGHPPKLDQEVIEQIKA  113 (517)
T ss_pred             EEE-ecCccHHHHHHHHHHHHh---cCCCCCCCHHHHHHHHh
Confidence            444 555556666666655422   12334555555444443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=90.58  E-value=4.1  Score=40.78  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=65.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +++.+.+.. =.++|-+.++.+-|..|..+...++++++.-+.+++...+.+.          ...|++.++++|+..-.
T Consensus         8 ~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i   76 (515)
T TIGR03140         8 AQLKSYLAS-LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGI   76 (515)
T ss_pred             HHHHHHHHh-cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence            445555543 2455655555557999999999999999988877775444221          35699999877763224


Q ss_pred             eecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHh
Q 022923          188 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA  229 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~  229 (290)
                      .|. |-..-.+|..||......   -++...++++..+.+..
T Consensus        77 ~f~-g~P~g~Ef~s~i~~i~~~---~~~~~~l~~~~~~~~~~  114 (515)
T TIGR03140        77 RFA-GIPGGHEFTSLVLAILQV---GGHGPKLDEGIIDRIRR  114 (515)
T ss_pred             EEE-ecCCcHHHHHHHHHHHHh---cCCCCCCCHHHHHHHHh
Confidence            444 555556666666655422   12334555555544443

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=89.96  E-value=1.5  Score=32.32  Aligned_cols=57  Identities=4%  Similarity=-0.036  Sum_probs=45.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +..|-+..-+..+.....+.++.+++.  .+.+=-||+.+++++++.++|-++||++-.
T Consensus         4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~   62 (72)
T cd02978           4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV   62 (72)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence            444445555888888888888887763  488889999999999999999999997644

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=89.78  E-value=3.8  Score=29.40  Aligned_cols=75  Identities=13%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      +..|+.+.|+.|++..-.+.+..-.   +.+..+|.....++ +.-+...+|+++.-..|.+.+.      .+...+.++
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I~~y   71 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------VDSSVIIST   71 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------EcHHHHHHH
Confidence            3457789999999998666655222   23333333222333 3345568998875422221221      245677788


Q ss_pred             HHhhC
Q 022923          203 LAKHT  207 (290)
Q Consensus       203 L~k~~  207 (290)
                      |++++
T Consensus        72 L~~~~   76 (77)
T cd03040          72 LKTYL   76 (77)
T ss_pred             HHHHc
Confidence            87765

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=89.38  E-value=0.52  Score=36.70  Aligned_cols=78  Identities=9%  Similarity=0.124  Sum_probs=42.4

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCccccCceEEEeCCCceeeee--c-CCccCH
Q 022923          124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSF--S-CTNATI  196 (290)
Q Consensus       124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~~~G~~~v~~~--~-~g~~~~  196 (290)
                      ..|+.++|+.|++....+++.     ++.|-.+|+.++    .++.+-++-.+.+.--++..........  . ....+.
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~   76 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSD   76 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCH
Confidence            468899999999998777764     566666776542    2333333333333333332221000000  0 134566


Q ss_pred             HHHHHHHHhh
Q 022923          197 KKFKDALAKH  206 (290)
Q Consensus       197 ~~l~~~L~k~  206 (290)
                      +++.++|.++
T Consensus        77 ~e~~~~l~~~   86 (105)
T cd02977          77 EEALELMAEH   86 (105)
T ss_pred             HHHHHHHHhC
Confidence            6777776655

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=89.31  E-value=1.3  Score=37.29  Aligned_cols=53  Identities=13%  Similarity=0.175  Sum_probs=36.2

Q ss_pred             EEEeCC------CChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCc----cccCceEEEeCCC
Q 022923          124 VDFFSP------GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNV----HVLPFFRFYRGAH  183 (290)
Q Consensus       124 V~FyA~------WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I----~~~PT~~~~~~G~  183 (290)
                      |.|.++      +|++|+.....|+.+     +|.|-.+|++.+.+    |.+.++-    ..+|.+++  +|+
T Consensus         3 vlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~   69 (147)
T cd03031           3 VLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR   69 (147)
T ss_pred             EEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence            445566      899999999888876     58888899987654    3344443    45665543  564

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=88.57  E-value=0.58  Score=37.07  Aligned_cols=78  Identities=13%  Similarity=0.223  Sum_probs=43.6

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhcCccccCceEEEeCCCceeeeecC----CccC
Q 022923          124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLNVHVLPFFRFYRGAHGRVCSFSC----TNAT  195 (290)
Q Consensus       124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~I~~~PT~~~~~~G~~~v~~~~~----g~~~  195 (290)
                      ..|+.++|+.|++....|++-     ++.|-.+|+.+++    ++.+-++-.+.|..-+++...........    ...+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~s   76 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLS   76 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccccCC
Confidence            458899999999988777763     5777777775432    33333334445655555333211111110    1235


Q ss_pred             HHHHHHHHHhh
Q 022923          196 IKKFKDALAKH  206 (290)
Q Consensus       196 ~~~l~~~L~k~  206 (290)
                      .+++.+.|.++
T Consensus        77 ~~e~~~~l~~~   87 (111)
T cd03036          77 EEEALELLSSD   87 (111)
T ss_pred             HHHHHHHHHhC
Confidence            56666666665

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=88.53  E-value=7  Score=38.27  Aligned_cols=90  Identities=10%  Similarity=-0.000  Sum_probs=61.2

Q ss_pred             cCCCeEEEEEeCCCChHHHHHH--HHHHHHHHHC--CCcEEEEEeccc--cHhHHHhcCccccCceEEEeCCCceeeeec
Q 022923          117 AGDKLVVVDFFSPGCGGCKALH--PKICQLAEMN--PDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYRGAHGRVCSFS  190 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~--p~l~~la~~~--~~v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~  190 (290)
                      ..++-+||.|-+.-.....+|.  -.++......  ..+..++|+...  ...++.-|.+-.+|.++|+...+ ......
T Consensus        16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sG-tpLevi   94 (506)
T KOG2507|consen   16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSG-TPLEVI   94 (506)
T ss_pred             hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCC-ceeEEe
Confidence            3566778878877777777776  2333333222  346667776543  44667789999999998885443 455555


Q ss_pred             CCccCHHHHHHHHHhhC
Q 022923          191 CTNATIKKFKDALAKHT  207 (290)
Q Consensus       191 ~g~~~~~~l~~~L~k~~  207 (290)
                      .|....++|..-|++..
T Consensus        95 tg~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   95 TGFVTADELASSIEKVW  111 (506)
T ss_pred             eccccHHHHHHHHHHHH
Confidence            57788999999998875

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=87.55  E-value=4.5  Score=32.25  Aligned_cols=70  Identities=20%  Similarity=0.153  Sum_probs=38.4

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG  181 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~  181 (290)
                      +.+.+.+......-+.+-|-.---+.=+.....+.++..+.+..    .++.-++.+.++|+|+.+|++++-++
T Consensus        11 ~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   11 ASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence            34444444222223333344333333333344444554444333    23333588999999999999999987

The N-terminal portion of these proteins is heterogeneous.

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=87.43  E-value=2.3  Score=32.54  Aligned_cols=60  Identities=5%  Similarity=0.011  Sum_probs=48.9

Q ss_pred             CeEEEEEeCCCChHHHHHHHHHHHHHHHC-C-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          120 KLVVVDFFSPGCGGCKALHPKICQLAEMN-P-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      ..++=.|.|.--+..++....+.++.+.+ + .+.+=-||+.+++++++.++|-++||++-.
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~   64 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI   64 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence            34555677888888888888888887765 2 388888999999999999999999997644

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=87.20  E-value=2.3  Score=33.63  Aligned_cols=61  Identities=3%  Similarity=0.008  Sum_probs=50.8

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHC-C-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMN-P-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      ...++=.|.+..-+..++....+.++.+.+ + .+.+=-||+.+++++++.++|-++||++-.
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~   67 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI   67 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc
Confidence            456677788888889999888888887765 2 388888999999999999999999997644

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.94  E-value=3.9  Score=39.46  Aligned_cols=92  Identities=14%  Similarity=0.299  Sum_probs=72.5

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +++-+.+..-.+..-|=-|++-.|..|-..-..++-++--++++....||..-.++-.+.-+|.++||+++  ||+    
T Consensus       105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe----  178 (520)
T COG3634         105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGE----  178 (520)
T ss_pred             HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cch----
Confidence            45555555556778888899999999999999999888889999999999876666677789999999755  776    


Q ss_pred             eecCCccCHHHHHHHHHh
Q 022923          188 SFSCTNATIKKFKDALAK  205 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k  205 (290)
                      .|..|..+.+++...|..
T Consensus       179 ~fg~GRmtleeilaki~~  196 (520)
T COG3634         179 EFGQGRMTLEEILAKIDT  196 (520)
T ss_pred             hhcccceeHHHHHHHhcC
Confidence            234467788888777764

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=85.41  E-value=5.5  Score=28.85  Aligned_cols=70  Identities=9%  Similarity=0.023  Sum_probs=40.7

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923          124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      ..|+.++|+.|++..-.+.+.     ++.+-.+|++..    .++.+.-.-..+|+++.- +|. ..      -.+...+
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~~-~~------l~es~~I   69 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NTG-VQ------MFESADI   69 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC-CCC-eE------EEcHHHH
Confidence            456778999999988777766     344444554432    234333455678987532 222 12      2335667


Q ss_pred             HHHHHhh
Q 022923          200 KDALAKH  206 (290)
Q Consensus       200 ~~~L~k~  206 (290)
                      .++|++.
T Consensus        70 ~~yL~~~   76 (77)
T cd03041          70 VKYLFKT   76 (77)
T ss_pred             HHHHHHh
Confidence            7777653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=83.23  E-value=4.1  Score=33.49  Aligned_cols=47  Identities=11%  Similarity=0.175  Sum_probs=34.7

Q ss_pred             ccHhHHHhcCccccCceEEEeCCC----------ceeeeecCCccCHHHHHHHHHhhC
Q 022923          160 EHKSMCYSLNVHVLPFFRFYRGAH----------GRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       160 ~~~~l~~~~~I~~~PT~~~~~~G~----------~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      -++.+.++|+|+.+|+|++.+++.          +.. ....|..+.+.-.+.+.+..
T Consensus        59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~-d~v~Gdvsl~~ALe~ia~~g  115 (130)
T TIGR02742        59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDY-DVVYGNVSLKGALEKMAQDG  115 (130)
T ss_pred             EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCe-eEEEecccHHHHHHHHHHhC
Confidence            358999999999999999998773          112 22347888888777777653

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=82.43  E-value=4.6  Score=28.64  Aligned_cols=52  Identities=10%  Similarity=0.084  Sum_probs=35.0

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-cHhHHHhcCccccCceEE
Q 022923          124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~~~l~~~~~I~~~PT~~~  178 (290)
                      +.|+.+||+.|++..-.+++..-   ++.+..+|... ..++.+......+|++..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~   54 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL   54 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence            35788999999998776665532   35566666543 345656566778999853

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=82.04  E-value=3.8  Score=28.98  Aligned_cols=50  Identities=8%  Similarity=0.104  Sum_probs=29.1

Q ss_pred             EEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923          125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       125 ~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      .|+.++|++|++..-.+....-.   +....+|.++.....+..+-..+|++.
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~   52 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE   52 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence            46788999999988776655322   333344433333333344445678874

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=81.47  E-value=2.7  Score=33.94  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=26.3

Q ss_pred             CeEEEEEeCCCChHHHHHHHHHHHHHHHC
Q 022923          120 KLVVVDFFSPGCGGCKALHPKICQLAEMN  148 (290)
Q Consensus       120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~  148 (290)
                      |.++|.|.-|.|+-|+.....+.++..+|
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY   30 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY   30 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence            56899999999999999999998888776

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=81.11  E-value=3.6  Score=34.32  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=50.0

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccc----cCceEEEeCCCceeeeecCCccCH
Q 022923          121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRGAHGRVCSFSCTNATI  196 (290)
Q Consensus       121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~----~PT~~~~~~G~~~v~~~~~g~~~~  196 (290)
                      .-++.|+.|.|+-|......++.     .++.+-.+..++...+-++|+|..    ==|. ++ +|.  .   ..|-...
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~-VI-~Gy--~---vEGHVPa   93 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTA-VI-NGY--Y---VEGHVPA   93 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEE-EE-cCE--E---EeccCCH
Confidence            34778999999999998877763     368888888888888888887752    1122 22 554  2   2255667


Q ss_pred             HHHHHHHHh
Q 022923          197 KKFKDALAK  205 (290)
Q Consensus       197 ~~l~~~L~k  205 (290)
                      +.+..++++
T Consensus        94 ~aI~~ll~~  102 (149)
T COG3019          94 EAIARLLAE  102 (149)
T ss_pred             HHHHHHHhC
Confidence            777777654

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=80.01  E-value=3.7  Score=36.95  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          163 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       163 ~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ..++++||+++|||+|  +|+   .... |..+.+.|.+.|++.++.
T Consensus       175 ~~A~e~gI~gVP~fv~--d~~---~~V~-Gaq~~~v~~~al~~~~~~  215 (225)
T COG2761         175 AAAQEMGIRGVPTFVF--DGK---YAVS-GAQPYDVLEDALRQLLAE  215 (225)
T ss_pred             HHHHHCCCccCceEEE--cCc---Eeec-CCCCHHHHHHHHHHHHhc
Confidence            4678999999999999  554   1223 789999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		8e-11
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		1e-09
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		2e-09
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		4e-09
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		4e-09
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		5e-09
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		6e-09
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		7e-09
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		8e-09
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		1e-08
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		1e-08
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		1e-08
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		1e-08
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		2e-08
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		2e-08
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		3e-08
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		3e-08
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		4e-08
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		6e-08
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		7e-08
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		9e-08
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		1e-07
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		2e-07
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-07
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		3e-07
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		4e-07
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		9e-07
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		1e-06
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		2e-06
1gh2_A	107	Crystal Structure Of The Catalytic Domain Of A New		6e-06
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		9e-06
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		9e-06
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		1e-05
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		1e-05
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		2e-05
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		2e-05
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		2e-05
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		2e-05
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		3e-05
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		7e-05
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		7e-05
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		8e-05
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		1e-04
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		1e-04
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		2e-04
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		3e-04
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		4e-04
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		4e-04
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		5e-04
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		6e-04
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		8e-04

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           MR +A+A DL + +     +L+VVDFF+  CG C+ + PK+  LA+  P+V+F +V+ ++
Sbjct: 1   MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ 60
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           ++      +V  +P F F +     V  FS  N T  K ++ + +H
Sbjct: 61  NEEAAAKYSVTAMPTFVFIKDGK-EVDRFSGANET--KLRETITRH 103

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162
           +V   +D  + L  AG+KLVV+DF++  CG CK + PK+ +L++   DV FL+V+ +E +
Sbjct: 4   QVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECE 63
Query: 163 SMCYSLNVHVLPFFRFYRGAH 183
            +     +  +P F F +   
Sbjct: 64  DIAQDNQIACMPTFLFMKNGQ 84

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V   P F+F++    +V  FS  N
Sbjct: 62  AQDVASEAEVKATPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
           +S   +GDKLVVVDFF+  CG CK + P I + AE   D  F +++ +E   +     V 
Sbjct: 12  DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 172 VLPFFRFYRG 181
            +P   FY+G
Sbjct: 72  SMPTLIFYKG 81

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
           +S   +GDKLVVVDFF+  CG CK + P I + AE   D  F +++ +E   +     V 
Sbjct: 19  DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 78
Query: 172 VLPFFRFYRG 181
            +P   FY+G
Sbjct: 79  SMPTLIFYKG 88

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  CQDVASEXEVKCMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  CQDVASESEVKSMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  CQDVASECEVKSMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 175
           AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  +E+K++   L + V+P 
Sbjct: 23  AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 176 FRFYR 180
           F+  +
Sbjct: 83  FKILK 87

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 175
           AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  +E+K++   L + V+P 
Sbjct: 35  AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 176 FRFYR 180
           F+  +
Sbjct: 95  FKILK 99

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  SQDVASESEVKSMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V   P F+F++    +V  FS  N
Sbjct: 62  AQDVASEAEVKATPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+  +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVND 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V   P F+F++    +V  FS  N
Sbjct: 62  CQDVASECEVKCTPTFQFFKKGQ-KVGEFSGAN 93

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
           +S   +GDKLVVVDFF+  CG  K + P I + AE   D  F +++ +E   +     V 
Sbjct: 12  DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 172 VLPFFRFYRGAHGRVCSFSCTNATIKK 198
            +P   FY+G            A IK+
Sbjct: 72  SMPTLIFYKGGKEVTRVVGANPAAIKQ 98

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171
           +S   +GDKLVVVDFF+  CG  K + P I + AE   D  F +++ +E   +     V 
Sbjct: 20  DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 79
Query: 172 VLPFFRFYRGAHGRVCSFSCTNATIKK 198
            +P   FY+G            A IK+
Sbjct: 80  SMPTLIFYKGGKEVTRVVGANPAAIKQ 106

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159
           +++++ S     E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ +
Sbjct: 12  SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 71
Query: 160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
           + + +     V  +P F+F++    +V  FS  N
Sbjct: 72  DCQDVASECEVKSMPTFQFFKKGQ-KVGEFSGAN 104

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH 161
           +V    DL   L  A  KLVV+DFF+  CG CK + PK+ +L+    D V  L+V+ +E 
Sbjct: 9   QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 68
Query: 162 KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203
           + +    N+  +P F F +    +V  F+  NA  K+ +D +
Sbjct: 69  EDIAMEYNISSMPTFVFLKNGV-KVEEFAGANA--KRLEDVI 107

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH 161
           +V    DL   L  A  KLVV+DFF+  CG CK + PK+ +L+    D V  L+V+ +E 
Sbjct: 4   QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 63
Query: 162 KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203
           + +    N+  +P F F +    +V  F+  NA  K+ +D +
Sbjct: 64  EDIAMEYNISSMPTFVFLKNGV-KVEEFAGANA--KRLEDVI 102

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  CQDVASECEVKRMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 175
           AGDK VV+D F+  CG  KA+ PK  +LAE   DV FL+++  +E+K++   L + V+P 
Sbjct: 22  AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 81
Query: 176 FRFYR 180
           F+  +
Sbjct: 82  FKILK 86

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           KL+VVDF +  C  CK + P   +LA+  P+V FL+V+ +E K++    NV  +P F F 
Sbjct: 27  KLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFL 86
Query: 180 R 180
           +
Sbjct: 87  K 87

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  XQDVASEXEVKCMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSF---SCTNATIKKFKDA 202
            + +     +  +P    ++  +G V +    + +   +K+F DA
Sbjct: 62  AQDVAPKYGIRGIPTLLLFK--NGEVAATKVGALSKGQLKEFLDA 104

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
           LVVVDF +  CG C+ + P    LA+  P+V FL+V+ +E KS+     +  +P F F +
Sbjct: 40  LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 181 GAHGRVCSFSCTNATIKKFKDALAKH 206
              G++       A   + +  +AKH
Sbjct: 100 --EGKILD-KVVGAKKDELQSTIAKH 122

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +   G  K + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193
            + +     V  +P F+F++    +V  FS  N
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
           +   KLVV+DF +  CG C+ + P    LA+  P+  FL+V+ +E K +    +V  +P 
Sbjct: 31  NTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 90
Query: 176 FRFYR 180
           F F +
Sbjct: 91  FLFMK 95

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           KLV++DF +  CG C+ + P   + A+  P   FL+V+ +E K +  + NV  +P F F 
Sbjct: 29  KLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFI 88
Query: 180 R 180
           +
Sbjct: 89  K 89

>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human Thioredoxin-Like Protein Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++ V S  D    L  AG +L VV F   GCG C  + P    ++   P   FL+V+  +
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62
Query: 161 HKSMCYSLNVHVLPFFRFYR 180
            +    + N+   P F+F+R
Sbjct: 63  CQGTAATNNISATPTFQFFR 82

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
           A DKLVVVDF++  CG CK + P I + +E  P   F +++ +E   +     V  +P  
Sbjct: 16  AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 75
Query: 177 RFYRGAHGRVCSFSCTNATIKK 198
             ++             A IK+
Sbjct: 76  LLFKNGKEVAKVVGANPAAIKQ 97

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
           A DKLVVVDF++  CG CK + P I + +E  P   F +++ +E   +     V  +P  
Sbjct: 22  AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 177 RFYRGAHGRVCSFSCTNATIKK 198
             ++             A IK+
Sbjct: 82  LLFKNGKEVAKVVGANPAAIKQ 103

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSLNVHVLP 174
            GDK+VV+DF++  CG CK + P   ++++      V F +V+ +E   +   + +  +P
Sbjct: 31  GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90
Query: 175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207
            F F++  +G+    +   A   K + A+ +H+
Sbjct: 91  TFVFFK--NGQKID-TVVGADPSKLQAAITQHS 120

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           K+V++DF +  CG C+ + P   + A+  P   FL+V+ +E K +    NV  +P F F 
Sbjct: 37  KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFI 96
Query: 180 R 180
           +
Sbjct: 97  K 97

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           KLVV+DF +  CG  + + P    LA+  P+  FL+V+ +E K +    +V  +P F F 
Sbjct: 38  KLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFM 97
Query: 180 R 180
           +
Sbjct: 98  K 98

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 96  GLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQ 155
           G    + E+    DL   L    +KLVVVDFF+  CG CK + P   +L+E   D  F++
Sbjct: 1   GSMSKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVK 59
Query: 156 VNYEEHKSMCYSLNVHVLPFFRFYRGAH--GRVC--SFSCTNATIKKF 199
           V+ ++ +      N+  +P F   +     G V   S +     IKKF
Sbjct: 60  VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 107

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 113 SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172
           +L    DKLV+ DF++  CG CK + P + +L +  PDV+F++ + +E   +     V  
Sbjct: 25  NLIKQNDKLVI-DFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTA 83
Query: 173 LPFFRFYRGAHGRV 186
           +P F    G  G++
Sbjct: 84  MPTFVL--GKDGQL 95

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 97  LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156
           +   + E+    DL   L    +KLVVVDFF+  CG CK + P   +L+E   D  F++V
Sbjct: 11  IMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVKV 69
Query: 157 NYEEHKSMCYSLNVHVLPFFRFYRGAH--GRVC--SFSCTNATIKKF 199
           + ++ +      N+  +P F   +     G V   S +     IKKF
Sbjct: 70  DVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 116

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
           +K+VVVDF++  C  C  L P I +LA   P V F ++N EE + +     +  LP   F
Sbjct: 23  NKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMF 82
Query: 179 YRGAH 183
           ++   
Sbjct: 83  FKNGE 87

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP- 174
           AG  L +VDFF+P CG C+ + P + +LA  +   ++ ++VN +EH  +     V  +P 
Sbjct: 48  AGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPT 107
Query: 175 FFRFYRGA 182
              F RGA
Sbjct: 108 LVLFRRGA 115

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
           A DKLVVVDF++  CG  K + P I + +E  P   F +++ +E   +     V  +P  
Sbjct: 22  AQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 177 RFYRGAHGRVCSFSCTNATIKK 198
             ++             A IK+
Sbjct: 82  LLFKNGKEVAKVVGANPAAIKQ 103

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
           LV+VDFF+  CG C+ L   +  +AE N DV F++V+ +++ +   +  V  +P   F +
Sbjct: 25  LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
Query: 181 GAHGRV--------CSFSCTNATIKKFK 200
                +           S   A I+KFK
Sbjct: 85  KEGNEIKTLDQFVGADVSRIKADIEKFK 112

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 107 AQDLVESLWHA----GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
            QD+ +S W       +  V+VDF++P CG CK + P I +LA E +  +   ++N +E 
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 162 KSMCYSLNVHVLPFFRFYRGAHGR 185
             +    N+  +P   F++    +
Sbjct: 62  PGIATQYNIRSIPTVLFFKNGERK 85

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 108 QDLVESLWHA----GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHK 162
           QD+ +S W       +  V+VDF++P CG CK + P I +LA E +  +   ++N +E  
Sbjct: 2   QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 163 SMCYSLNVHVLPFFRFYRGAHGR 185
            +    N+  +P   F++    +
Sbjct: 62  GIATQYNIRSIPTVLFFKNGERK 84

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           M ++ ++Q   +S+  + ++LV+VDFF+  CG CK + P   + ++    + F++V+ +E
Sbjct: 9   MVKIVTSQAEFDSI-ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 161 HKSMCYSLNVHVLPFFRFYRG 181
              +    N+  +P F+ Y+ 
Sbjct: 68  VSEVTEKENITSMPTFKVYKN 88

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 176
           GDK V+VDF++  CG C+ + P + + AE + D V   ++N +E+        +  +P  
Sbjct: 16  GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 177 RFYRGAH 183
             ++G  
Sbjct: 76  ILFKGGE 82

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 176
           GDK V+VDF++  CG C+ + P + + AE + D V   ++N +E+        +  +P  
Sbjct: 16  GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 177 RFYRGAH 183
             ++G  
Sbjct: 76  ILFKGGR 82

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 123 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
           V+DF++P CG C++  P   +  AE    V+F++VN E   ++     +  +P    YR
Sbjct: 59  VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYR 117

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           K+V+ +F +  CG CK + P   +L+E  P + FL ++ +E      S  +   P F F 
Sbjct: 47  KIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 180 RGAH 183
           R   
Sbjct: 107 RDGQ 110

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
           A  ++ VVDF++  C  C  L P I +LAE  P V F ++N +E+  +     V  LP  
Sbjct: 14  ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTV 73
Query: 177 RFYR 180
            F++
Sbjct: 74  IFFK 77

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 117 AGDKLVVVDFFSPGCGGCKALHPKIC----QLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172
           A  K ++V+F++P CG CKAL P+      +L     +++  +V+  E   +     V  
Sbjct: 22  AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG 81
Query: 173 LPFFRFYR 180
            P  +F+R
Sbjct: 82  YPTIKFFR 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	3e-19
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	8e-19
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	1e-18
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	9e-18
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	5e-17
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	6e-16
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	3e-15
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	3e-15
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	6e-15
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	8e-15
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	1e-14
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	2e-14
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-14
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	2e-14
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-14
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-14
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	3e-14
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	4e-14
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	1e-13
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	2e-13
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	2e-13
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-13
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	3e-13
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	8e-13
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	2e-12
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	5e-12
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	1e-11
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-11
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	8e-11
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	9e-10
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-07
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	1e-08
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	1e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-06
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-08
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-08
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-08
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	8e-08
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-07
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	7e-05
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	3e-07
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-07
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-05
1mek_A	120	Protein disulfide isomerase; electron transport, r	4e-07
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	4e-07
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	6e-07
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	9e-07
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	9e-07
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-06
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	3e-06
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	4e-06
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	5e-06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	5e-06
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	5e-06
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	6e-06
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	7e-06
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	8e-06
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	9e-06
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	1e-05
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	2e-05
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-05
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	2e-05
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-05
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	4e-05
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	4e-05
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	6e-05
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	7e-05
2l57_A	126	Uncharacterized protein; structural genomics, unkn	8e-05
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	1e-04
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	1e-04
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	1e-04
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	1e-04
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-04
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-04
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	3e-04
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	3e-04
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	3e-04
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	3e-04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	3e-04
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	3e-04
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	4e-04
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	4e-04
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	4e-04
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	4e-04
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	5e-04
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	5e-04
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	6e-04
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	7e-04
2kuc_A	130	Putative disulphide-isomerase; structural genomics	8e-04
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	8e-04
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	9e-04
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	9e-04
1bed_A	181	DSBA oxidoreductase; TCPG, protein disulfide isome	9e-04

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++ V S  D    L  AG +L VV F   GCG C  + P    ++   P   FL+V+  +
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            +    + N+   P F+F+R    R+  +   +A     ++ + +H
Sbjct: 63  CQGTAATNNISATPTFQFFRNKV-RIDQYQGADA--VGLEEKIKQH 105

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 78.9 bits (195), Expect = 8e-19
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            + +     V  +P F+F++    +V  FS   A  +K +  + + 
Sbjct: 62  CQDVASESEVKSMPTFQFFKKGQ-KVGEFSG--ANKEKLEATINEL 104

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 78.5 bits (194), Expect = 1e-18
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159
           +++++ S     E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ +
Sbjct: 12  SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 71

Query: 160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           + + +     V  +P F+F++    +V  FS  N   +K +  + + 
Sbjct: 72  DCQDVASECEVKSMPTFQFFKKGQ-KVGEFSGANK--EKLEATINEL 115

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 75.8 bits (187), Expect = 9e-18
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           MR +A+A DL + +     +L+VVDFF+  CG C+ + PK+  LA+  P+V+F +V+ ++
Sbjct: 1   MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ 60

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           ++      +V  +P F F +   G+      + A   K ++ + +H
Sbjct: 61  NEEAAAKYSVTAMPTFVFIKD--GKEVD-RFSGANETKLRETITRH 103

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 75.7 bits (186), Expect = 5e-17
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159
            + EV SA    E L      L+VV F++P    C  ++  + +LA+  P V F+++  E
Sbjct: 13  AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE 72

Query: 160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
               +     +  +P F F++    +        A   +    + +H
Sbjct: 73  GVPEVSEKYEISSVPTFLFFKN--SQKID-RLDGAHAPELTKKVQRH 116

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 71.7 bits (176), Expect = 6e-16
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162
           E+ +   L +      +  +V+ F +  C  C  +             V  + ++ + H 
Sbjct: 24  ELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN-YYYVTLVDIDVDIHP 82

Query: 163 SMCYSLNVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH 206
            +    N+  LP F FY    +  V   +   A     + A  K+
Sbjct: 83  KLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKY 127

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 70.2 bits (172), Expect = 3e-15
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 100 NMREVASAQDLVESLWHAG--DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN 157
           N+  + + +   + L  A    K+V+ +F +  CG  + + P   +L+E  P + FL ++
Sbjct: 25  NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVID 84

Query: 158 YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            +E      S  +   P F F R    +V      N    +    +   
Sbjct: 85  VDELSDFSASWEIKATPTFFFLRDGQ-QVDKLVGANK--PELHKKITAI 130

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           M    + ++L   +     +LV++   +  CG C  +  K+  + E    V+ +++  ++
Sbjct: 2   MNTFKTIEELATYI--EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQD 59

Query: 161 HKSMCYSLNVHVLPFFRFYR-----GAHGRVCSFSCTNATIKKFKD 201
            + +     V   P    +          R  S      TI+ F++
Sbjct: 60  MQEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFEE 105

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 69.0 bits (169), Expect = 6e-15
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 89  AQRWWEKGLQPNMREVASAQDLVESL--WHAGDKLVVVDFFSPGCGGCKALHPKICQLAE 146
           A       +   +  V S +     +   +   KLVV+DF +  CG C+ + P    LA+
Sbjct: 2   AASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK 61

Query: 147 MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
             P+  FL+V+ +E K +    +V  +P F F +   G V       A  ++    +  H
Sbjct: 62  KFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKE--GDVKD-RVVGAIKEELTAKVGLH 118

Query: 207 T 207
            
Sbjct: 119 A 119

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE 160
            +V    DL   L  A  KLVV+DFF+  CG CK + PK+ +L+    D V  L+V+ +E
Sbjct: 3   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            + +    N+  +P F F +    +V  F+   A  K+ +D +  +
Sbjct: 63  CEDIAMEYNISSMPTFVFLKNGV-KVEEFAG--ANAKRLEDVIKAN 105

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 91  RWWEK---------GLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI 141
           R W              P++ +V S +     +  + D L V  F +  CG CK +   +
Sbjct: 2   RGWHHHHHHGIRMRARYPSVVDVYSVEQFRNIM--SEDILTVAWFTAVWCGPCKTIERPM 59

Query: 142 CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
            ++A   P V+F +V+ + +  +     V  LP F   R 
Sbjct: 60  EKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARS 99

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++ V S  +    +  + ++LV+VDFF+  CG CK + P   + ++    + F++V+ +E
Sbjct: 10  VKIVTSQAEFDSII--SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
              +    N+  +P F+ Y+   G     +   A     K  + K+
Sbjct: 68  VSEVTEKENITSMPTFKVYKN--GSSVD-TLLGANDSALKQLIEKY 110

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
              KL+VVDF +  C  CK + P   +LA+  P+V FL+V+ +E K++    NV  +P F
Sbjct: 24  GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83

Query: 177 RFYRG 181
            F + 
Sbjct: 84  IFLKD 88

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 161
           RE++  Q + E      D  V++  +      C  ++  +  LA   P+ +F++      
Sbjct: 6   REISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNS- 64

Query: 162 KSMCYSLNVHVLPFFRFYRGAH--GRVCSFS---CTNATIKKFKDALAKH 206
                  + + LP    Y+      +          N  +++ +  LA+ 
Sbjct: 65  --CIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162
           +  +A +   ++  A DKLVVVDF++  CG CK + P I + +E  P   F +++ +E  
Sbjct: 10  QFKTASEFDSAI--AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 67

Query: 163 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            +     V  +P    ++   G+  +     A     K A+A +
Sbjct: 68  DVAQKNEVSAMPTLLLFKN--GKEVA-KVVGANPAAIKQAIAAN 108

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 103 EVASAQDLVESLWHAGD--KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
              + Q+    + +  D  KLV++DF +  CG C+ + P   + A+  P   FL+V+ +E
Sbjct: 10  ACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDE 69

Query: 161 HKSMCYSLNVHVLPFFRFYRG 181
            K +  + NV  +P F F + 
Sbjct: 70  LKDVAEAYNVEAMPTFLFIKD 90

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159
           ++ ++ +  +    +    +  +V+DF++  CG CK + P + +L +  PDV+F++ + +
Sbjct: 13  SITKLTNLTEFRNLI--KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVD 70

Query: 160 EHKSMCYSLNVHVLPFFRFYRG 181
           E   +     V  +P F   + 
Sbjct: 71  ESPDIAKECEVTAMPTFVLGKD 92

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159
            + E+    DL   L    +KLVVVDFF+  CG CK + P   +L+E   D  F++V+ +
Sbjct: 14  ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVD 72

Query: 160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           + +      N+  +P F   +   G         A+I K +D + K 
Sbjct: 73  KLEETARKYNISAMPTFIAIKN--GEKVG-DVVGASIAKVEDMIKKF 116

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
               LVVVDF +  CG C+ + P    LA+  P+V FL+V+ +E KS+     +  +P F
Sbjct: 36  ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTF 95

Query: 177 RFYRG 181
            F + 
Sbjct: 96  MFLKE 100

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 103 EVASAQDLVESL--WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
              +  +    +       K+V++DF +  CG C+ + P   + A+  P   FL+V+ +E
Sbjct: 18  ACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDE 77

Query: 161 HKSMCYSLNVHVLPFFRFYRG 181
            K +    NV  +P F F + 
Sbjct: 78  LKEVAEKYNVEAMPTFLFIKD 98

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 103 EVASAQDLVESL-WHAGDKLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYE 159
           E+   +         AGDKL+V+ F +     CKAL      ++    N +V FL ++ +
Sbjct: 4   EINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD 63

Query: 160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           E+  +     +  +P+F       G +     + A  K++   L   
Sbjct: 64  ENSEISELFEISAVPYFIIIHK--GTILK-ELSGADPKEYVSLLEDC 107

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-EEHKSM 164
           +       +  AGDK VV+D F+  CG  KA+ PK  +LAE   DV FL+++  +E+K++
Sbjct: 11  NKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTL 70

Query: 165 CYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
              L + V+P F+  +     V     T A   K  +A+   
Sbjct: 71  AKELGIRVVPTFKILKE--NSVVG-EVTGAKYDKLLEAIQAA 109

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-EEHKSM 164
           +       +  AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  +E+K++
Sbjct: 24  NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTL 83

Query: 165 CYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
              L + V+P F+  +     V     T A   K  +A+   
Sbjct: 84  AKELGIRVVPTFKILKE--NSVVG-EVTGAKYDKLLEAIQAA 122

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 63.3 bits (154), Expect = 8e-13
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 161
           RE++  Q + E      D  VV+  +      C  ++  +  LA   P+ +F++      
Sbjct: 13  REISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNS- 71

Query: 162 KSMCYSLNVHVLPFFRFYRGAH--GRVCSFS---CTNATIKKFKDALAKH 206
                  + + LP    Y+     G+          N  +++ +  L++ 
Sbjct: 72  --CIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159
            +       + + +       LV+VDFF+  CG C+ L   +  +AE N DV F++V+ +
Sbjct: 4   PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVD 63

Query: 160 EHKSMCYSLNVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH 206
           ++ +   +  V  +P   F +   +          A + + K  + K 
Sbjct: 64  KNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 63.6 bits (154), Expect = 5e-12
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 100 NMREVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY 158
            + E+ S +  +E++        +VV  +  G  GC AL+  +  LA   P V+F ++  
Sbjct: 113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKA 172

Query: 159 EEHKSMCYSLNVHVLPFFRFYRG 181
                     +  VLP    Y+G
Sbjct: 173 SNT-GAGDRFSSDVLPTLLVYKG 194

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 100 NMREVASAQDLVESLWHAG--DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQV 156
           ++  + S       L       K +VVDF +  CG CK + P    L+      V FL+V
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62

Query: 157 NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           + +   ++  +  +  +P F  Y+   G         A+  K K  +AKH
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKD--GVKAD-DLVGASQDKLKALVAKH 109

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVN 157
           +++ ++S     +     GDK+VV+DF++  CG CK + P   ++++      V F +V+
Sbjct: 16  SVQVISSYDQFKQVT--GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVD 73

Query: 158 YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207
            +E   +   + +  +P F F++   G+    +   A   K + A+ +H+
Sbjct: 74  VDEQSQIAQEVGIRAMPTFVFFKN--GQKID-TVVGADPSKLQAAITQHS 120

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 59.6 bits (144), Expect = 8e-11
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 84  LRIGKAQRWWEKGLQPNMR-------EVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCK 135
           LR  + Q   +   + +         E+ + +  +E++        +VV+ +  G  GC 
Sbjct: 77  LRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCD 136

Query: 136 ALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
           AL+  +  LA   P V+F ++            +  VLP    Y+G
Sbjct: 137 ALNSSLECLAAEYPMVKFCKIRASNT-GAGDRFSSDVLPTLLVYKG 181

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 55.4 bits (133), Expect = 9e-10
 Identities = 11/85 (12%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE 159
           + ++ S +++ +++    +K++V+ F       C  L   + + +           V+ +
Sbjct: 5   LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVD 64

Query: 160 EHKSMCYSLNVHVLP-FFRFYRGAH 183
           +        ++  +P    F+ G H
Sbjct: 65  QTAVYTQYFDISYIPSTVFFFNGQH 89

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVNYEEHKSMCYSLNVHV 172
           A    V+++F++P CG CK   P+  ++A    + +P +   +++      +    +V  
Sbjct: 30  ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG 89

Query: 173 LPFFRFYRG 181
            P  +  + 
Sbjct: 90  YPTIKILKK 98

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 60  VFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGD 119
           + ++ +A+   GS ++  I A+      +     +    P +  V + ++  E +     
Sbjct: 95  ILKKGQAVDYEGSRTQEEIVAKV-----REVSQPDWTPPPEVTLVLTKENFDEVV--NDA 147

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
            +++V+F++P CG CK L P+  + A+     +P +   +V+      +    +V   P 
Sbjct: 148 DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPT 207

Query: 176 FRFYRG 181
            + +R 
Sbjct: 208 LKIFRK 213

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 17/115 (14%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           M  +             G    +V F    C  CK +   + +     P V    V+ E 
Sbjct: 1   MSAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEA 60

Query: 161 HKSMCYSLNVHVLPFFRFYR---------GAHGRVCSFSCTNATIKKFKDALAKH 206
              +   L    +P   F R         G              ++    ++  H
Sbjct: 61  RPELMKELGFERVPTLVFIRDGKVAKVFSGIMNP--------RELQALYASIHHH 107

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNV 170
                  D L +V+F++P CG C+ L P+  + A  +   V+   VN ++H+S+     V
Sbjct: 28  NREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGV 87

Query: 171 HVLPFFRFYRGAHGRV 186
              P  + +     + 
Sbjct: 88  QGFPTIKIFGANKNKP 103

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 3/122 (2%)

Query: 61  FQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDK 120
               K   K G                  +  +              ++   ++     +
Sbjct: 77  EDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAV--NSGE 134

Query: 121 LVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           L  V+F+SPG      L P   + A E++  ++   VN  + + +C    V+  P    +
Sbjct: 135 LWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF 194

Query: 180 RG 181
           R 
Sbjct: 195 RS 196

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 61  FQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDK 120
           + E +  P++ S +    S     R   + R W  G  P      + Q         G  
Sbjct: 618 YPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQT-FNEKVLQGKT 676

Query: 121 LVVVDFFSPGCGGCKALHPKICQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
             VVDF++P  G  +   P+   LA  +   V+  +V+ + +   C    +   P  + Y
Sbjct: 677 HWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY 736

Query: 180 RGAHGR 185
           +    +
Sbjct: 737 QYERAK 742

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
            +  +VDFF+P     +AL P++ + +  +   ++   ++   H+ +C   N+   P   
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTV 514

Query: 178 FYRG 181
            +  
Sbjct: 515 VFNQ 518

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
              D++ +VDF+SP     + L P+  ++A  +   +    V+  ++ S C   NV   P
Sbjct: 560 RKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYP 619

Query: 175 FFRFYR 180
             RFY 
Sbjct: 620 EIRFYP 625

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
            K V+++F++P CG CK L P    L +      D+   +++   +        V   P 
Sbjct: 25  KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT 84

Query: 176 FRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT 207
             F   G       F   N  ++     + +H 
Sbjct: 85  IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHA 117

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVNYEEHKSMCYSLNVHVL 173
            + +  + F++P CG CK L P   +L+         V+  +V+    +++C   +V   
Sbjct: 20  AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY 79

Query: 174 PFFRFYRG 181
           P    +RG
Sbjct: 80  PTLLLFRG 87

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
           G    VVDF++P CG C+   P+   LA  +   V+  +V+ + +   C    +   P  
Sbjct: 20  GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV 79

Query: 177 RFYRG 181
           + Y+ 
Sbjct: 80  KLYQY 84

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 51.9 bits (123), Expect = 8e-08
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 9/114 (7%)

Query: 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAE---------MNPDVQFLQV 156
           S  D       A     +V F++ GCG C+       + A                   V
Sbjct: 29  SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAV 88

Query: 157 NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 210
           N      +C   +++ +P   F+        +  C  ++++      +    D 
Sbjct: 89  NCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDE 142

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSLNVHVLP 174
               LV+ +FF+P CG CK + P+  + AE     ++   Q++  E++ +C   N+   P
Sbjct: 29  QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP 88

Query: 175 FFRFYRG 181
             + ++ 
Sbjct: 89  SLKIFKN 95

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHVL 173
             K V+V +++P CG CK L P   +LA+       DV   ++++ E+      + +   
Sbjct: 375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGY 432

Query: 174 PFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKD 232
           P    Y  G       +   + ++    D + ++           G    E     A ++
Sbjct: 433 PTIVLYPGGKKSESVVYQ-GSRSLDSLFDFIKENGHF-----DVDGKALYEEAQEKAAEE 486

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEM------NPDVQFLQVNYEEHKSMCYSLNVHV 172
           +K V V ++ P      A       L+        +      +++ E++  +   + V  
Sbjct: 33  EKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG 92

Query: 173 LPFFRFYRGAHGR 185
            P  R+Y     +
Sbjct: 93  FPTMRYYTRIDKQ 105

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
                L++V+FF+P CG  K L P+    A  +   V   +V+   + + C    V   P
Sbjct: 18  TGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYP 77

Query: 175 FFRFYRG 181
             + +R 
Sbjct: 78  TLKIFRD 84

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 61  FQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDK 120
             + +      +  +F      G      +            +V  A++  + + +  +K
Sbjct: 313 VMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENF-DEIVNNENK 371

Query: 121 LVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
            V+++F++P CG CK L PK  +L E    +P++   +++   +  +     V   P   
Sbjct: 372 DVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIY 430

Query: 178 FYRG 181
           F   
Sbjct: 431 FSPA 434

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHV 172
           A  K ++V+F++P CG CKAL P+  + A        +++  +V+  E   +     V  
Sbjct: 22  AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG 81

Query: 173 LPFFRFYRG 181
            P  +F+R 
Sbjct: 82  YPTIKFFRN 90

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 98  QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFL 154
             N  ++ +  +L ++L  A  K V++D ++  C  CK          ++     D   L
Sbjct: 10  HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL 69

Query: 155 QV----NYEEHKSMCYSLNVHVLPFFRFY 179
           Q     N  +  ++   LNV  LP   F+
Sbjct: 70  QANVTANDAQDVALLKHLNVLGLPTILFF 98

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-----EMNPDVQFLQVNYEEHKSMCYSLNVHVL 173
           + + +V+F++P CG CK L P+    A     +    V+   V+   ++ +     +   
Sbjct: 25  EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF 84

Query: 174 PFFRFYRG 181
           P  + ++ 
Sbjct: 85  PTIKIFQK 92

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 90  QRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP 149
           QR   +G QP   E ++  D ++     GD ++++                I +L    P
Sbjct: 12  QRLLTRGWQP--VEASTVDDWIKR---VGDGVILLSSDPRRTPEVSDNPVMIAELLREFP 66

Query: 150 DVQFL--QVNYEEHKSMCYSLNVHVLPFFRFYRG 181
              +     + E+ +++    NV   P    +  
Sbjct: 67  QFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTD 100

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVN--YEEHKSMCYSLNVHVLPF 175
           +   +V+F++P CG CK L     + A  ++  VQ   VN    ++K++C   +V+  P 
Sbjct: 35  NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPT 94

Query: 176 FRFYRG 181
              +R 
Sbjct: 95  LMVFRP 100

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
           +   +++F++P C  C+ L P+    AE   + +V   +V+  E   +     ++ LP  
Sbjct: 22  EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI 81

Query: 177 RFYRG 181
              + 
Sbjct: 82  YHCKD 86

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           K  V+ F++P C  C A  P + Q+A  NP V F+ +    
Sbjct: 25  KPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRA 65

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHV 172
           A    V+++F++P CG CK   P+  ++A      +P +   +++      +    +V  
Sbjct: 32  ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSG 91

Query: 173 LPFFRFYRG 181
            P  +  + 
Sbjct: 92  YPTIKILKK 100

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 122 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
            +  F SP C  C      + +   E    +   +++    +       +  +P
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVP 57

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 99  PNMREV--ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQ 155
            N+  +  ++ Q ++E    +    V+  F+S     C  L P +  LA + N      +
Sbjct: 7   ENIVNINESNLQQVLE---QSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAK 63

Query: 156 VNYEEHKSMCYSLNVHVLPF-FRFYRG 181
           ++ +  + +     +  +P  + F  G
Sbjct: 64  LDCDAEQMIAAQFGLRAIPTVYLFQNG 90

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVN--YEEHKSMCYSLNVHV 172
                V+FF+  CG C A  P    LAE      P +    ++   E + ++C   N+  
Sbjct: 30  RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG 89

Query: 173 LPFFRFYRG--AHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGP 215
            P  RF+     +G    F    A ++  ++ L           P
Sbjct: 90  FPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWP 134

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYE 159
           ++++A  ++  +   + GDK  +VDF++  CG CK + P + +L+ E    +   +VN +
Sbjct: 33  LKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVD 92

Query: 160 EHKS 163
           +   
Sbjct: 93  KEPE 96

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           K  V+ F++P C  C+   P + Q+A  +P+V F+ V   +
Sbjct: 26  KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYE 159
           + +V + +   E   + GDK  +VDF++  CG CK + P + +LA E +  +   +V+ E
Sbjct: 20  LAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTE 79

Query: 160 EH 161
           + 
Sbjct: 80  KE 81

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 45.7 bits (108), Expect = 9e-06
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM-------NPDVQFLQVNYEEHKSMCYSLN 169
               + +V+F++  C   + LHP   + +++          V F +V+ ++H  +     
Sbjct: 20  NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYR 79

Query: 170 VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA 229
           +   P  + +R  +G +           +   ALA +   +      +  +  E+  L  
Sbjct: 80  ISKYPTLKLFR--NGMMMKREYRGQ---RSVKALADYIRQQKSDPIQEIRDLAEITTLDR 134

Query: 230 NKDLSFNYTPKPHPMPAPAVEEV 252
           +K     Y  +         E V
Sbjct: 135 SKRNIIGYFEQKDSDNYRVFERV 157

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 161
            ++ VVDF++  C  C  L P I +LAE  P V F ++N +E+
Sbjct: 16  HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDEN 58

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 9/87 (10%)

Query: 122 VVVDFFSPGCGGCKALHPKICQLAEM---------NPDVQFLQVNYEEHKSMCYSLNVHV 172
           V+  ++       K    +      +         + D+ F+ V+ ++   +   L    
Sbjct: 30  VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDE 89

Query: 173 LPFFRFYRGAHGRVCSFSCTNATIKKF 199
                  +G              + +F
Sbjct: 90  EGSLYVLKGDRTIEFDGEFAADVLVEF 116

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVN--YEEHKSMCYSLNVHV 172
                V+FF+  CG   A  P   +LA    +  P +    ++   E + ++C   N+  
Sbjct: 30  SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG 89

Query: 173 LPFFRFYRGAH 183
            P  RF++   
Sbjct: 90  FPTVRFFQAFT 100

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
            K V V+F++P CG CK L P   +L E    + ++   +++   ++    ++ VH  P 
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPT 324

Query: 176 FRFYRG 181
            +F+  
Sbjct: 325 LKFFPA 330

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
             +L  V+F+SPGC  C  L P   + A E++  ++   VN  + + +C    V+  P  
Sbjct: 113 SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL 172

Query: 177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 210
             +R     V      + + +       +H    
Sbjct: 173 FIFRSGMAAV--KYNGDRSKESLVAFAMQHVRST 204

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           D  +V+DF++P CG C++  P   + A E    V+F++VN E  
Sbjct: 55  DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           K+ +  F SP C  C A    + ++A EM   V+   +N  E+
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMEN 45

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           D  ++VDF++P CG C+ + P+    A  +   V+  +++ + H
Sbjct: 64  DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAH 107

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEM------NPDVQFLQVNYEEHKSMCYSLNVHV 172
            K V+++F++P CG CKAL PK  +L  +         V   +V+   +        +  
Sbjct: 25  TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDV---PDEIQG 81

Query: 173 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT 207
            P  + Y  GA G+  ++S  + T++     +A++ 
Sbjct: 82  FPTIKLYPAGAKGQPVTYS-GSRTVEDLIKFIAENG 116

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           +  +  + +E          ++ F +  C  C  +  ++  ++ E            EE 
Sbjct: 12  QSINVVENLEEA--KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEE 69

Query: 162 K 162
           K
Sbjct: 70  K 70

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
            K VVV F+SP C  CKA+ P   + A E      F ++N   +
Sbjct: 24  KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATN 67

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           +KLV+VD ++  C  C    P   ++A +      F ++N +E+
Sbjct: 21  NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN 64

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 174
           + ++V+ FF+  C  C     ++ +L       +  L+V+ ++++S+    +V  LP
Sbjct: 42  NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLP 98

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKS 163
            K  +V F    C  C+ + P + +L         F  V+ EE K+
Sbjct: 22  GKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT 67

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 117 AGDKLVVVDFFSPGCGGCK------ALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSL 168
              +++ + +  P                 +   A++  +  V F  V+ E+  ++   L
Sbjct: 28  KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL 87

Query: 169 NVHVLPFFRFYRG 181
            +        ++ 
Sbjct: 88  GLTEEDSIYVFKE 100

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
             LV+VDF++  CG CK + P + ++  E    V   +VN +++
Sbjct: 20  SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDN 63

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           +  V+VDF++P CG CK + P I +LA E +  +   ++N +E 
Sbjct: 18  EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           DK V+VDF++  CG C+ + P +  +A E    ++ +++N +E+
Sbjct: 23  DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDEN 66

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
            L +VDFF+P CG C+ + P + +LA +    ++ ++VN +EH
Sbjct: 51  PLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEH 93

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           DK V+VDF++P CG C+ + P I +LA E    V+ ++VN +E+
Sbjct: 19  DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 6/74 (8%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD------VQFLQVNYEEHKSMCYSLNVHV 172
              + +   + GC  C+     + +  E+  +      ++    +   HK       V  
Sbjct: 22  PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDR 81

Query: 173 LPFFRFYRGAHGRV 186
           +P           +
Sbjct: 82  VPTIVIEGDKDYGI 95

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Length = 193

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSM 164
              K+ VV+ F   C  C     K+         DV+F  V        
Sbjct: 23  LAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVW 71

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
            +  + +         LV+VDF++  C  C+ + P + ++A E    +   +++ +E+
Sbjct: 9   QNFDETLGQ-----HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDEN 61

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHK 162
               ++  +S  C  C    P++ Q + E++  +          +
Sbjct: 31  QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE 75

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Length = 195

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162
              K+ V++FF   C  C    P + +L +  P   +L+  +   +
Sbjct: 20  QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQ 65

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           +  VVVDF +  CG CK L P++ ++  + +  V   +V+ ++H
Sbjct: 31  ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDH 74

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Length = 193

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSM 164
              K+ V++FF   C  C  L P + + A+   D +     +    K M
Sbjct: 22  QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEM 70

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           A+ Q  ++      D  V+VDF++  CG C+ + P + + A      V   ++N +E+
Sbjct: 8   ANFQQAIQG-----DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
              V+VDF++P CG C+ + P + ++A E    ++ +++N +E 
Sbjct: 19  SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 97  LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-----V 151
           +  +  E     +  +++ +    + ++ F +P C  C        + A  N       +
Sbjct: 112 VDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKI 171

Query: 152 QFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV 186
               V   E+       NV  +P          RV
Sbjct: 172 LGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRV 206

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQL----AEMNPDVQFLQVNYE--EHKSMCYSLNV 170
             DKL+ VD F+  CG CK L   + +        N     L+++ E  E   +     V
Sbjct: 25  VEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGV 84

Query: 171 HVLP 174
           H  P
Sbjct: 85  HAYP 88

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEE 160
           + +V+ DF++P CG  K + P + +L  EM   ++ ++++ +E
Sbjct: 17  EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Length = 175

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF 153
            + VV+FF   C  C+    ++  L + +P+V+ 
Sbjct: 23  DVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRL 56

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 161
           D  ++VDF++  CG CK + P + ++A E    +   ++N +++
Sbjct: 20  DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63

>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13 PDB: 2ijy_A Length = 181

 Score = 38.5 bits (89), Expect = 9e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD 150
           A    VV +FFS  C  C    P I QL +  P+
Sbjct: 16  ASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.93
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.89
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.87
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.87
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.87
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.87
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.85
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.85
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.85
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.85
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.85
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.85
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.84
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.84
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.84
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.84
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.84
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.84
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.84
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.84
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.84
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.84
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.83
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.83
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.83
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.83
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.83
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.83
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.83
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.83
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.82
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.82
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.82
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.82
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.82
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.82
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.82
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.81
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.81
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.81
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.81
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.81
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.81
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.81
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.8
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.8
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.8
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.8
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.8
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.8
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.8
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.8
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.8
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.8
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.8
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.79
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.79
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.79
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.79
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.79
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.79
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.79
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.78
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.78
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.78
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.78
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.78
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.78
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.77
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.77
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.76
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.76
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.76
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.75
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.75
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.75
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.75
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.75
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.75
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.75
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.74
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.74
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.74
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.74
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.74
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.73
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.72
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.72
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.72
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.71
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.71
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.69
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.5
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.68
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.67
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.67
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.66
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.66
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.65
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.65
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.64
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.64
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.63
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.63
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.62
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.61
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.41
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.61
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.61
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.61
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.6
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.6
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.59
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.59
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.58
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.58
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.57
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.56
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.56
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.55
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.55
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.55
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.55
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.54
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.53
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.53
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.52
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.52
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.51
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.51
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.51
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.51
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.51
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.5
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.5
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.49
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.49
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.48
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.47
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.47
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.46
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.45
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.44
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.44
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.43
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.43
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.42
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.41
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.4
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.4
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.4
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.4
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.39
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.38
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.38
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.36
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.35
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.34
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.34
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.34
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.33
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.33
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.32
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.31
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.29
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.96
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.28
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.26
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.26
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.25
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.23
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.87
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.21
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.2
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.16
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.15
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.15
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.14
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.14
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.13
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.13
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.12
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.11
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.11
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.09
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.07
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.05
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.03
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.03
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.02
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.02
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.01
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.99
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.98
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.97
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.97
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.97
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.95
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.92
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.91
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.9
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.89
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.89
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.88
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.88
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.86
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.84
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.81
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.78
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.76
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.75
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.75
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.71
3me7_A	170	Putative uncharacterized protein; electron transfe	98.71
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.71
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.7
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.69
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.65
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.64
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.63
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.63
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.63
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.62
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.59
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.59
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.58
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.58
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.58
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.57
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.55
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.53
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.52
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.5
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.49
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.48
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.45
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.44
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.42
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.4
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.4
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.38
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.37
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.36
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.34
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.34
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.33
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.3
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.28
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.27
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.27
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.26
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.25
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.25
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.25
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.23
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.21
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.2
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.2
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.2
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.17
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.16
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.15
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.13
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.13
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.12
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.08
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.05
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.02
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.0
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.96
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	97.93
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.93
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.85
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.68
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	97.54
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.53
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.46
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.45
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.42
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.37
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	97.32
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.28
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.13
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.05
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.01
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.99
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	96.97
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	96.96
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	96.7
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	96.69
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	96.68
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	96.68
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	96.63
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.61
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	96.45
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	96.42
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	96.4
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	96.37
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	95.57
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	95.4
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	95.02
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	93.65
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.44
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	93.23
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	93.16
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	92.97
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	92.44
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	92.23
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	92.03
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	91.25
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	90.32
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	89.09
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	89.06
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	88.59
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	87.67
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	87.36
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	87.12
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	83.88
3kgk_A	110	Arsenical resistance operon trans-acting represso;	82.58
3l78_A	120	Regulatory protein SPX; transcription, transcripti	82.29
3ktb_A	106	Arsenical resistance operon trans-acting represso;	82.28
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	82.14
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	81.83
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	80.72

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.93  E-value=2.3e-25  Score=175.03  Aligned_cols=103  Identities=31%  Similarity=0.592  Sum_probs=94.5

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      +.+|.|.++|++.+..+++++|+|+|||+||++|+.+.|.++++++.++++.|++||+|++++++++|+|+++||+++|+
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~   81 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMK   81 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEE
Confidence            56899999999999877889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhh
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +|+ .+..+. | .+.++|.++|++|
T Consensus        82 ~G~-~v~~~~-G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           82 NGQ-KLDSLS-G-ANYDKLLELVEKN  104 (105)
T ss_dssp             TTE-EEEEEE-S-CCHHHHHHHHHHH
T ss_pred             CCE-EEEEEe-C-cCHHHHHHHHHhc
Confidence            987 444443 4 6899999999986

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.89  E-value=6.6e-23  Score=172.12  Aligned_cols=106  Identities=10%  Similarity=0.097  Sum_probs=93.5

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.++++.++|++.+....+++|||+|||+||++|+.+.|.|++++++|++ +.|++||+|++++++++|+|.++|||+||
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence            67899999999998755789999999999999999999999999999975 99999999999999999999999999999


Q ss_pred             eCCCceee-e-------ecCCccC-HHHHHHHHHhhC
Q 022923          180 RGAHGRVC-S-------FSCTNAT-IKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~-~-------~~~g~~~-~~~l~~~L~k~~  207 (290)
                      ++|+ .+. .       ...|... .++|+++|++++
T Consensus       103 k~G~-~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          103 YRNK-HMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             ETTE-EEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             ECCE-EEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            9997 331 3       3335555 899999998875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.87  E-value=1.3e-21  Score=151.34  Aligned_cols=105  Identities=26%  Similarity=0.521  Sum_probs=92.7

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +|.+|.+.++|.+.+....+++++|+||++||++|+.+.|.+++++++++++.|+.||++++++++++|+|.++||+++|
T Consensus         2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence            47889999999999875578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. | .+.++|.++|++++
T Consensus        82 ~~G~-~~~~~~-G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           82 RNKV-RIDQYQ-G-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             ETTE-EEEEEE-S-SCHHHHHHHHHHHH
T ss_pred             ECCe-EEEEEe-C-CCHHHHHHHHHHhc
Confidence            9886 344443 4 45567999998874

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.87  E-value=2.5e-21  Score=148.47  Aligned_cols=104  Identities=31%  Similarity=0.568  Sum_probs=94.2

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      +.+|++.++|.+.+...++++++|+||++||++|+.+.|.+++++++++++.|+.||++++++++++|+|.++||+++|+
T Consensus         2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   81 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFK   81 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence            57899999999999766799999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|+ .+..+. |. +.++|.++|++++
T Consensus        82 ~g~-~~~~~~-g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           82 KGQ-KVGEFS-GA-NKEKLEATINELV  105 (105)
T ss_dssp             TTE-EEEEEE-SS-CHHHHHHHHHHHC
T ss_pred             CCe-EEEEEe-CC-CHHHHHHHHHHhC
Confidence            886 444444 66 9999999998864

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.87  E-value=1.3e-21  Score=154.73  Aligned_cols=105  Identities=30%  Similarity=0.531  Sum_probs=93.5

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      .-....+.++|++.+...++++++|+||++||++|+.+.|.+++++++|+++.|+.||++++++++++|+|.++||+++|
T Consensus        12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~   91 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFF   91 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEE
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEE
Confidence            44567788999999975579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. |. +.++|.++|++++
T Consensus        92 ~~G~-~~~~~~-G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           92 KKGQ-KVGEFS-GA-NKEKLEATINELV  116 (116)
T ss_dssp             SSSS-EEEEEE-SC-CHHHHHHHHHHHC
T ss_pred             eCCe-EEEEEc-CC-CHHHHHHHHHHhC
Confidence            8887 444444 66 9999999998864

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.87  E-value=1.7e-22  Score=156.36  Aligned_cols=103  Identities=12%  Similarity=0.211  Sum_probs=77.7

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      |.+|++.++|.+.+  .++++++|+||++||++|+.+.|.+++++++++++.|+.||++++++++++|+|.++||+++|+
T Consensus         2 m~~i~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (105)
T 4euy_A            2 MNTFKTIEELATYI--EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFY   79 (105)
T ss_dssp             --------CCSSST--TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEE
T ss_pred             ccccCCHHHHHHHH--hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence            45678888888877  5789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|+  ......|..+.++|.++|++++
T Consensus        80 ~G~--~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           80 NGK--EILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             TTE--EEEEEESSCCHHHHHHHHHTTC
T ss_pred             CCe--EEEEEeCCcCHHHHHHHHHHhh
Confidence            886  4344448889999999999875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.85  E-value=1.5e-20  Score=143.60  Aligned_cols=104  Identities=32%  Similarity=0.606  Sum_probs=92.5

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      |.+|++.++|.+.+....+++++|+||++||++|+.+.|.+++++++++++.|+.||++++++++++|+|.++||+++|+
T Consensus         1 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (104)
T 2vim_A            1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK   80 (104)
T ss_dssp             CEECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CeecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEEe
Confidence            46788989999999755789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|+ .+..+. | .+.++|.++|++++
T Consensus        81 ~g~-~~~~~~-G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           81 DGK-EVDRFS-G-ANETKLRETITRHK  104 (104)
T ss_dssp             TTE-EEEEEE-S-SCHHHHHHHHHHHC
T ss_pred             CCc-EEEEEe-C-CCHHHHHHHHHhhC
Confidence            886 333333 5 68999999998763

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.85  E-value=9.4e-21  Score=147.09  Aligned_cols=106  Identities=24%  Similarity=0.385  Sum_probs=94.0

Q ss_pred             CCeeEeCCHhHHHHHHHhcC--CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCc
Q 022923           99 PNMREVASAQDLVESLWHAG--DKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~--~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ..+.++++.++|.+.+....  +++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   81 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccE
Confidence            36888999999999996534  8999999999999999999999999999998 79999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|++|+ .+..+. |. +.++|.++|++++
T Consensus        82 ~~~~~~G~-~~~~~~-G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           82 FHVYKDGV-KADDLV-GA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEEETTE-EEEEEE-SC-CHHHHHHHHHHHH
T ss_pred             EEEEECCe-EEEEEc-CC-CHHHHHHHHHHHh
Confidence            99999886 333343 65 8999999999875

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.85  E-value=1.3e-20  Score=147.11  Aligned_cols=104  Identities=25%  Similarity=0.486  Sum_probs=91.3

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .......+.++|++.+  .++++++|+||++||++|+.+.|.+++++++++++.|+.||++++.+++++|+|.++||+++
T Consensus         6 ~~~~~~~~~~~f~~~~--~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   83 (109)
T 3f3q_A            6 HMVTQFKTASEFDSAI--AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLL   83 (109)
T ss_dssp             CCCEECCSHHHHHHHT--TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccccCCCCHHHHHHHH--hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            3455677889999988  56899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+ .+..+. |. +.++|.++|++++
T Consensus        84 ~~~G~-~~~~~~-G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           84 FKNGK-EVAKVV-GA-NPAAIKQAIAANA  109 (109)
T ss_dssp             EETTE-EEEEEE-SS-CHHHHHHHHHHHC
T ss_pred             EECCE-EEEEEe-CC-CHHHHHHHHHhhC
Confidence            99876 444443 44 7799999998864

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.85  E-value=2.1e-20  Score=154.82  Aligned_cols=110  Identities=21%  Similarity=0.362  Sum_probs=96.8

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      ...+.++++.++|.+.+....++++||+||++||++|+.+.|.|++++++++++.|+.||++++++++++|+|.++||++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   90 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFL   90 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            35788999999999998765589999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhCCCC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR  210 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~  210 (290)
                      +|++|+  +.....| .+.++|.++|+++++..
T Consensus        91 ~~~~G~--~~~~~~G-~~~~~l~~~i~~~l~~~  120 (153)
T 2wz9_A           91 FFKNSQ--KIDRLDG-AHAPELTKKVQRHASSG  120 (153)
T ss_dssp             EEETTE--EEEEEES-SCHHHHHHHHHHHSCTT
T ss_pred             EEECCE--EEEEEeC-CCHHHHHHHHHHHhccc
Confidence            999776  4333334 57889999999998654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.85  E-value=3.3e-21  Score=158.64  Aligned_cols=103  Identities=14%  Similarity=0.122  Sum_probs=90.5

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCC--hHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGC--GGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC--~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      ..++++ ++|++.+.. .+++|||+|||+||  ++|+.+.|.+++++++|. +++|++||+|++++++.+|+|+++||++
T Consensus        17 ~~~vt~-~~F~~~v~~-~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTli   94 (137)
T 2qsi_A           17 PTLVDE-ATVDDFIAH-SGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLA   94 (137)
T ss_dssp             CEEECT-TTHHHHHHT-SSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEE
T ss_pred             CcccCH-hHHHHHHhc-CCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            345655 789988853 45599999999999  999999999999999995 6999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ||+||+  ......|..+.+++.++|++++
T Consensus        95 lFkdG~--~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           95 VVQPER--TLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEECCE--EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCE--EEEEEeCCCCHHHHHHHHHHHh
Confidence            999997  4455558899999999999876

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.85  E-value=2.3e-21  Score=160.09  Aligned_cols=104  Identities=13%  Similarity=0.006  Sum_probs=91.0

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCC--ChHHHHHHHHHHHHHHHCC-C-cEEEEEeccccHhHHHhcCccccCce
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~W--C~~Ck~~~p~l~~la~~~~-~-v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      +.++ +.++|++.+.  .+++|||+|||+|  |++|+.+.|.+++++++|+ + ++|++||+|++++++.+|+|+++||+
T Consensus        19 ~~~~-t~~~F~~~v~--~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTl   95 (140)
T 2qgv_A           19 WTPV-SESRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPAT   95 (140)
T ss_dssp             CEEC-CHHHHHHHHH--TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEE
T ss_pred             CccC-CHHHHHHHHh--CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEE
Confidence            3344 4588999883  6789999999999  9999999999999999995 5 99999999999999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ++|+||+  +.....|..+.++|.++|++++..
T Consensus        96 ilFk~G~--~v~~~~G~~~k~~l~~~i~~~l~~  126 (140)
T 2qgv_A           96 LVFTGGN--YRGVLNGIHPWAELINLMRGLVEP  126 (140)
T ss_dssp             EEEETTE--EEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEECCE--EEEEEecCCCHHHHHHHHHHHhcC
Confidence            9999997  445555889999999999988743

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.84  E-value=2.9e-20  Score=148.92  Aligned_cols=107  Identities=28%  Similarity=0.467  Sum_probs=94.8

Q ss_pred             CCCeeEeCCHhHHHHHHHhc--CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWHA--GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~--~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ...+.++.+.++|++.+...  .+++++|+||++||++|+.+.|.|++++++++++.|+.||++++.+++++|+|.++||
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   94 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPT   94 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCccCE
Confidence            44789999999999998743  5899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|++|+ .+..+. | .+.++|.++|++++
T Consensus        95 ~~~~~~G~-~~~~~~-G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           95 FMFLKEGK-ILDKVV-G-AKKDELQSTIAKHL  123 (124)
T ss_dssp             EEEEETTE-EEEEEE-S-CCHHHHHHHHHHHC
T ss_pred             EEEEECCE-EEEEEe-C-CCHHHHHHHHHHhc
Confidence            99998886 333333 5 58999999999875

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.84  E-value=3.1e-20  Score=142.29  Aligned_cols=104  Identities=31%  Similarity=0.559  Sum_probs=92.2

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.++++.++|.+.+....+++++|+||++||++|+.+.|.++++++++ +++.|+.||++++.+++++|+|.++||+++|
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEE
Confidence            567888899999997557899999999999999999999999999999 6899999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. | .+.++|.++|++++
T Consensus        82 ~~G~-~~~~~~-g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           82 KNGV-KVEEFA-G-ANAKRLEDVIKANI  106 (106)
T ss_dssp             ETTE-EEEEEE-S-CCHHHHHHHHHHTC
T ss_pred             cCCc-EEEEEc-C-CCHHHHHHHHHHhC
Confidence            9886 344443 5 78899999998763

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.6e-20  Score=146.16  Aligned_cols=105  Identities=21%  Similarity=0.356  Sum_probs=88.5

Q ss_pred             CeeEeCCHhHHHHHHHh-cCCCeEEEEEeCCCChHHHHHHHHHHHHHHH--CCCcEEEEEeccccHhHHHhcCccccCce
Q 022923          100 NMREVASAQDLVESLWH-AGDKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~-~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~--~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      ++.++++.++|.+.+.. ..+++++|+||++||++|+.+.|.+++++++  ++++.|+.||++++++++++|+|.++||+
T Consensus         1 ~v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             CEEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            36788998999998854 4589999999999999999999999999998  67899999999999999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+. |. ..++|.++|++++
T Consensus        81 ~~~~~G~-~~~~~~-G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           81 IIIHKGT-ILKELS-GA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEETTE-EEEEEC-SC-CHHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEec-CC-CHHHHHHHHHHHH
Confidence            9998886 333333 44 5667999998875

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.84  E-value=1.2e-20  Score=156.56  Aligned_cols=106  Identities=12%  Similarity=0.195  Sum_probs=93.9

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+..+.+.++|++.+....+++|||+|||+||++|+.+.|.+++++++|++ +.|+.||+|++++++++|+|.++||+++
T Consensus         4 ~l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~   83 (149)
T 3gix_A            4 LLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVF   83 (149)
T ss_dssp             SCCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEE
T ss_pred             ceeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEE
Confidence            466788999999999755789999999999999999999999999999987 9999999999999999999999999999


Q ss_pred             EeCCCcee---------eeecCC-ccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRV---------CSFSCT-NATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v---------~~~~~g-~~~~~~l~~~L~k~~  207 (290)
                      |++|+ .+         ..+ .| ..+.++|.++|++..
T Consensus        84 ~~~G~-~v~~~~g~~~~~~~-~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           84 FFNGQ-HMKVDYGSPDHTKF-VGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             EETTE-EEEEECSSSCCSCE-ESCCSSHHHHHHHHHHHH
T ss_pred             EECCe-EEEeecCCCCCCeE-eeecCCHHHHHHHHHHHH
Confidence            99987 33         233 36 788999999998774

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.84  E-value=1.9e-20  Score=147.27  Aligned_cols=104  Identities=30%  Similarity=0.492  Sum_probs=92.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      ++.++++.++|.+.+....+++++|+||++||++|+.+.|.++++++++ ++.|+.||++++.+++++|+|.++||+++|
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   92 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAI   92 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEEEE
Confidence            3788998899999997557899999999999999999999999999999 999999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. | .+.++|.++|++++
T Consensus        93 ~~G~-~~~~~~-G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           93 KNGE-KVGDVV-G-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             ETTE-EEEEEE-S-SCHHHHHHHHHHHC
T ss_pred             eCCc-EEEEEe-C-CCHHHHHHHHHHhC
Confidence            9886 333333 5 68899999998864

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.84  E-value=2.5e-20  Score=144.25  Aligned_cols=105  Identities=13%  Similarity=0.297  Sum_probs=91.5

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.++ +.++|.+.+.. .+++++|+||++||++|+.+.|.++++++.+++ +.|+.||++++++++++|+|.++||+++
T Consensus         5 ~v~~l-~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   82 (111)
T 3gnj_A            5 SLEKL-DTNTFEQLIYD-EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILY   82 (111)
T ss_dssp             CSEEC-CHHHHHHHHTT-SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEE
T ss_pred             cceec-CHHHHHHHHHh-cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEE
Confidence            45555 66889988854 579999999999999999999999999999985 9999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |++|+ .+..+. |..+.++|.++|+++++
T Consensus        83 ~~~g~-~~~~~~-g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           83 FKDGE-YKGKMA-GDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EETTE-EEEEEE-SSCCHHHHHHHHHHHHH
T ss_pred             EECCE-EEEEEe-ccCCHHHHHHHHHHHhc
Confidence            99886 344444 88899999999998753

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.84  E-value=3.9e-20  Score=146.15  Aligned_cols=108  Identities=23%  Similarity=0.414  Sum_probs=94.2

Q ss_pred             CCCeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ...+..+.+.++|.+.+..  ..+++++|+||++||++|+.+.|.|++++++++++.|+.||++++.+++++|+|.++||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   90 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT   90 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccE
Confidence            4467778888999998864  26899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +++|++|+ .+..+. |.. .++|.++|+++++
T Consensus        91 ~~~~~~G~-~~~~~~-G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           91 FLFMKEGD-VKDRVV-GAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             EEEEETTE-EEEEEE-SSC-HHHHHHHHHHHHS
T ss_pred             EEEEeCCE-EEEEEe-CcC-HHHHHHHHHHHhc
Confidence            99999886 333344 666 9999999998763

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.84  E-value=2.7e-20  Score=148.88  Aligned_cols=105  Identities=12%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC------CCcEEEEEeccccHhHHHhcCccc
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN------PDVQFLQVNYEEHKSMCYSLNVHV  172 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~------~~v~~~~Vd~d~~~~l~~~~~I~~  172 (290)
                      ..+.+++ .++|++.+.. .+++++|+|||+||++|+.+.|.|+++++.+      +++.|+.||++++.+++++|+|.+
T Consensus        15 ~~v~~l~-~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   92 (127)
T 3h79_A           15 SRVVELT-DETFDSIVMD-PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG   92 (127)
T ss_dssp             CCCEECC-TTTHHHHHTC-TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS
T ss_pred             CceEECC-hhhHHHHHhC-CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc
Confidence            3566664 4688888853 5899999999999999999999999998754      359999999999999999999999


Q ss_pred             cCceEEEeCCCcee-eeecCCccCHHHHHHHHHhh
Q 022923          173 LPFFRFYRGAHGRV-CSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       173 ~PT~~~~~~G~~~v-~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +||+++|++|+... ..+. |.++.++|.+||+++
T Consensus        93 ~Pt~~~~~~g~~~~~~~~~-G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           93 FPTMRYYTRIDKQEPFEYS-GQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SSEEEEECSSCSSSCEECC-SCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCceEec-CCccHHHHHHHHHhc
Confidence            99999999887322 3444 889999999999886

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.84  E-value=1.8e-20  Score=148.00  Aligned_cols=103  Identities=17%  Similarity=0.426  Sum_probs=91.0

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      +.+.++++.++|++.+.  .+++++|+||++||++|+.+.|.+++++++++++.|+.||++++.+++++|+|.++||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   89 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIK--QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVL   89 (114)
T ss_dssp             GGSCBCCSHHHHHHHHH--HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             hheeecCCHHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEE
Confidence            46888999999998884  5799999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      |++|+ .+..+. |.. .++|.++|+++
T Consensus        90 ~~~G~-~~~~~~-G~~-~~~l~~~l~~~  114 (114)
T 2oe3_A           90 GKDGQ-LIGKII-GAN-PTALEKGIKDL  114 (114)
T ss_dssp             EETTE-EEEEEE-SSC-HHHHHHHHHTC
T ss_pred             EeCCe-EEEEEe-CCC-HHHHHHHHHhC
Confidence            98886 333344 666 89999998763

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.84  E-value=2.7e-20  Score=149.71  Aligned_cols=103  Identities=21%  Similarity=0.307  Sum_probs=92.3

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      .+.++++.++|++.+  ..++++||+||++||++|+.+.|.|++++++++++.|+.||++++.+++++|+|.++||+++|
T Consensus        20 mv~~l~~~~~f~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~   97 (125)
T 1r26_A           20 SVVDVYSVEQFRNIM--SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIA   97 (125)
T ss_dssp             CCEEECCHHHHHHHH--HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEECCCHHHHHHHH--ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            467888889999988  578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. | .+.++|.++|++++
T Consensus        98 ~~G~-~~~~~~-G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           98 RSGK-MLGHVI-G-ANPGMLRQKLRDII  122 (125)
T ss_dssp             ETTE-EEEEEE-S-SCHHHHHHHHHHHH
T ss_pred             eCCe-EEEEEe-C-CCHHHHHHHHHHHh
Confidence            9886 344443 5 68899999998875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.83  E-value=3.3e-20  Score=148.88  Aligned_cols=103  Identities=18%  Similarity=0.313  Sum_probs=85.1

Q ss_pred             CCeeEeCCHhHHHHHHHhcC-CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923           99 PNMREVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~-~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      +.+.+| +.++|.+.+..++ +++|+|+|||+||++|+.+.|.+++++++|++++|++||+|+.   +++|+|.++||++
T Consensus         3 G~v~~i-t~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEEC-CGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred             cceEEe-CHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEEE
Confidence            467788 5578888876432 4599999999999999999999999999999999999999986   5899999999999


Q ss_pred             EEeCCCceeeeecC----C--ccCHHHHHHHHHhh
Q 022923          178 FYRGAHGRVCSFSC----T--NATIKKFKDALAKH  206 (290)
Q Consensus       178 ~~~~G~~~v~~~~~----g--~~~~~~l~~~L~k~  206 (290)
                      +|++|+ .+..+.+    |  ..+.++|+.+|.++
T Consensus        79 ~fk~G~-~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           79 VYKNGQ-IEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEETTE-EEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEECCE-EEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999998 3333331    1  25788899988875

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.83  E-value=6.2e-20  Score=143.50  Aligned_cols=109  Identities=22%  Similarity=0.407  Sum_probs=95.3

Q ss_pred             CCCeeEeCCHhHHHHHHHhc--CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWHA--GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~--~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ...+.++.+.++|++.+...  .+++++|+||++||++|+.+.|.+++++++++++.|+.||++++.+++++|+|.++||
T Consensus         5 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt   84 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPT   84 (118)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBSE
T ss_pred             CCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCcE
Confidence            45788999999999998642  4889999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+ .+..+. | .+.++|.++|++++..
T Consensus        85 ~~~~~~g~-~~~~~~-g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           85 FLFIKDGE-KVDSVV-G-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             EEEEETTE-EEEEEE-S-CCHHHHHHHHHHHHC-
T ss_pred             EEEEeCCe-EEEEec-C-CCHHHHHHHHHHHhcc
Confidence            99998886 333333 5 5899999999998643

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.83  E-value=7.4e-20  Score=142.37  Aligned_cols=106  Identities=30%  Similarity=0.461  Sum_probs=90.7

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-ccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-~~~~l~~~~~I~~~PT~  176 (290)
                      ...+.++++ ++|.+.+....+++++|+||++||++|+.+.|.+++++++++++.|+.||++ ++.+++++|+|.++||+
T Consensus         4 ~~~v~~l~~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~   82 (111)
T 2pu9_C            4 VGKVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF   82 (111)
T ss_dssp             TTSEEEECT-TTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSEE
T ss_pred             cCccEEech-HHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeEE
Confidence            345777776 6899888654689999999999999999999999999999999999999998 78999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+. |. +.++|.++|++++
T Consensus        83 ~~~~~G~-~~~~~~-G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           83 KILKENS-VVGEVT-GA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             EEESSSS-EEEEEE-SS-CHHHHHHHHHHHH
T ss_pred             EEEeCCc-EEEEEc-CC-CHHHHHHHHHHhh
Confidence            9998887 333333 54 5889999998763

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.83  E-value=7.2e-20  Score=143.05  Aligned_cols=105  Identities=22%  Similarity=0.406  Sum_probs=92.0

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      .+......+.++|.+.+.  .+++++|+||++||++|+.+.|.+++++++++++.|+.||++++.+++++|+|.++||++
T Consensus         7 ~~~~~~~~~~~~f~~~~~--~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIIS--QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFK   84 (112)
T ss_dssp             --CCEEECSHHHHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             ceeEEEECCHHHHHHHHc--cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            455667788899999984  689999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|++|+ .+..+. |. +.++|.++|++++
T Consensus        85 ~~~~G~-~~~~~~-G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           85 VYKNGS-SVDTLL-GA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEETTE-EEEEEE-SC-CHHHHHHHHHTTC
T ss_pred             EEECCc-EEEEEe-CC-CHHHHHHHHHHhh
Confidence            999886 333343 66 9999999999875

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.83  E-value=7e-20  Score=140.33  Aligned_cols=102  Identities=21%  Similarity=0.386  Sum_probs=89.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.++ +.++|.+.+   ++++++|+||++||++|+.+.|.++++++.+++ +.|+.||++++++++++|+|.++||+++
T Consensus         4 ~v~~l-~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 3die_A            4 AIVKV-TDADFDSKV---ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIV   79 (106)
T ss_dssp             CCEEC-CTTTHHHHS---CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             ceEEC-CHHHHHHHh---cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEE
Confidence            35555 457888888   689999999999999999999999999999976 9999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+ .+. ...|..+.++|.++|++++
T Consensus        80 ~~~G~-~~~-~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           80 FKDGQ-PVD-KVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EETTE-EEE-EEESCCCHHHHHHHHHTTC
T ss_pred             EeCCe-EEE-EEeCCCCHHHHHHHHHHhC
Confidence            99886 333 4448899999999998764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.83  E-value=7.7e-20  Score=140.54  Aligned_cols=100  Identities=20%  Similarity=0.302  Sum_probs=88.6

Q ss_pred             eCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       104 I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      ..+.++|++.+.  ++++++|+||++||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++||+++|++|
T Consensus         8 ~l~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g   85 (109)
T 3tco_A            8 VLTEENFDEVIR--NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNG   85 (109)
T ss_dssp             ECCTTTHHHHHH--HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             EecHHHHHHHHh--cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCC
Confidence            445578998884  48999999999999999999999999999997 599999999999999999999999999999888


Q ss_pred             CceeeeecCCccCHHHHHHHHHhhC
Q 022923          183 HGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      + .+.. ..|..+.++|.++|++++
T Consensus        86 ~-~~~~-~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           86 Q-LVDS-LVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             E-EEEE-EESCCCHHHHHHHHHHHC
T ss_pred             c-EEEe-eeccCCHHHHHHHHHHHh
Confidence            6 3444 448889999999999875

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.83  E-value=2.5e-20  Score=151.19  Aligned_cols=108  Identities=15%  Similarity=0.208  Sum_probs=93.9

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      ..+.++++.++|.+.+....++++||+||++||++|+.+.|.++++++.+ ++.|+.||++++.+++++|+|.++||+++
T Consensus        20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   98 (133)
T 3cxg_A           20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEF   98 (133)
T ss_dssp             EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEEEE
Confidence            35788999899999887656789999999999999999999999998887 79999999999999999999999999999


Q ss_pred             Ee--CCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          179 YR--GAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       179 ~~--~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |+  +|++.+.....|. +.++|.++|++++.
T Consensus        99 ~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           99 YFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            97  7765455444455 89999999999864

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.83  E-value=8.8e-20  Score=147.69  Aligned_cols=108  Identities=18%  Similarity=0.306  Sum_probs=94.8

Q ss_pred             CCCeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ...+.++.+.++|.+.+..  ..+++++|+||++||++|+.+.|.+++++++++++.|+.||++++.+++++|+|.++||
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt  102 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPT  102 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccE
Confidence            3468889999999998863  24899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +++|++|+  +.....|. +.++|.++|++++.
T Consensus       103 ~~~~~~G~--~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A          103 FFFLRDGQ--QVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             EEEEETTE--EEEEEESC-CHHHHHHHHHHHHH
T ss_pred             EEEEcCCe--EEEEEeCC-CHHHHHHHHHHHhc
Confidence            99998886  33333355 88999999998864

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.82  E-value=6.3e-20  Score=142.37  Aligned_cols=107  Identities=27%  Similarity=0.454  Sum_probs=94.3

Q ss_pred             CCCeeEeCCHhHHHHHHHhc--CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWHA--GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~--~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ...+.++++.++|.+.+...  .+++++|+||++||++|+.+.|.++++++.++++.|+.||++++++++++|+|.++||
T Consensus         3 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A            3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CCceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccE
Confidence            35688999999999999742  4899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|++|+  +.....| .+.++|.++|++++
T Consensus        83 ~~~~~~G~--~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           83 FIFLKDGK--LVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTE--EEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEeCCE--EEEEEec-CCHHHHHHHHHHhh
Confidence            99998886  3333335 68889999998874

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.82  E-value=4.6e-20  Score=144.25  Aligned_cols=103  Identities=17%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      +..+.+.++| +.+  .++++++|+||++||++|+.+.|.++++++.++++.|+.||++++.+++++|+|.++||+++|+
T Consensus         4 ~~~~~~~~~f-~~~--~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   80 (110)
T 2l6c_A            4 IRDITTEAGM-AHF--EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIR   80 (110)
T ss_dssp             CSBCGGGCSH-HHH--TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             eeecCCHHHH-HHH--HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence            4556677888 666  3579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +|+ .+..+ .|..+.++|.++|+++.+
T Consensus        81 ~G~-~v~~~-~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           81 DGK-VAKVF-SGIMNPRELQALYASIHH  106 (110)
T ss_dssp             SSS-EEEEE-ESCCCHHHHHHHHHTC--
T ss_pred             CCE-EEEEE-cCCCCHHHHHHHHHHHhh
Confidence            887 34444 477899999999998864

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.82  E-value=8.2e-20  Score=145.15  Aligned_cols=106  Identities=22%  Similarity=0.531  Sum_probs=94.7

Q ss_pred             CCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccHhHHHhcCccccC
Q 022923           97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLP  174 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~I~~~P  174 (290)
                      ....+..|++.++|.+.+  ..+++++|+||++||++|+.+.|.++++++.+++  +.|+.||++++.+++++|+|.++|
T Consensus        13 ~~~~~~~i~~~~~f~~~l--~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~P   90 (121)
T 2j23_A           13 PRGSVQVISSYDQFKQVT--GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP   90 (121)
T ss_dssp             CCCCEEECCSHHHHHHHH--SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSS
T ss_pred             CCcceEEcCCHHHHHHHH--cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCccc
Confidence            456889999999999998  5789999999999999999999999999999876  999999999999999999999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |+++|++|+ .+..+. |. +.++|.++|++++
T Consensus        91 t~~~~~~G~-~~~~~~-G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           91 TFVFFKNGQ-KIDTVV-GA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEEETTE-EEEEEE-SS-CHHHHHHHHHHHT
T ss_pred             EEEEEECCe-EEeeEc-CC-CHHHHHHHHHHhh
Confidence            999999886 344444 66 9999999999875

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.82  E-value=1.9e-19  Score=142.44  Aligned_cols=106  Identities=20%  Similarity=0.363  Sum_probs=92.1

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      ++.+.+.+.++|.+.+.. .++++||+||++||++|+.+.|.|.++++++. ++.|+.||++++.+++++|+|.++||++
T Consensus        12 ~~~~~~~~~~~f~~~v~~-~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   90 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVVN-SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL   90 (119)
T ss_dssp             CSEEECCSHHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             ceEEEecChhhHHHHHHc-CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEE
Confidence            456667788899987764 58899999999999999999999999999985 6999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|++|+ .+..+ .|..+.++|.++|++++
T Consensus        91 ~~~~G~-~~~~~-~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           91 AMKNGD-VVDKF-VGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEETTE-EEEEE-ESCCCHHHHHHHHHHHH
T ss_pred             EEeCCc-EEEEE-cCCCCHHHHHHHHHHHh
Confidence            998886 33333 47789999999998864

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.82  E-value=2.8e-19  Score=141.72  Aligned_cols=106  Identities=31%  Similarity=0.495  Sum_probs=91.0

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-ccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-~~~~l~~~~~I~~~PT~  176 (290)
                      ...+.++++ ++|.+.+....+++++|+||++||++|+.+.|.+++++++++++.|+.||++ ++.+++++|+|.++||+
T Consensus        17 ~~~v~~l~~-~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~   95 (124)
T 1faa_A           17 VGKVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF   95 (124)
T ss_dssp             TTSEEEECT-TTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEE
T ss_pred             CCceEEecc-hhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeeeEE
Confidence            456777766 6788888755789999999999999999999999999999999999999998 78999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+. |.. .+++.++|+++.
T Consensus        96 ~~~~~G~-~~~~~~-G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           96 KILKENS-VVGEVT-GAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             EEEETTE-EEEEEE-SSC-HHHHHHHHHHHT
T ss_pred             EEEeCCc-EEEEEc-CCC-HHHHHHHHHHhh
Confidence            9999887 333333 544 899999998764

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.82  E-value=1.4e-19  Score=141.60  Aligned_cols=103  Identities=17%  Similarity=0.346  Sum_probs=90.0

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +++++. ++|.+.+   .+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||+++|
T Consensus         3 v~~l~~-~~~~~~~---~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            3 IVKATD-QSFSAET---SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             CEECCT-TTHHHHH---SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEE
T ss_pred             eEEecH-HHHHHHh---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            345544 6788888   68999999999999999999999999999985 699999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ++|+  +.....|..+.++|.++|+++++.
T Consensus        79 ~~G~--~~~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           79 KDGE--VVETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             ETTE--EEEEEESCCCHHHHHHHHHTTSCS
T ss_pred             eCCE--EEEEEeCCCCHHHHHHHHHHHHHh
Confidence            8886  333344889999999999999754

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.82  E-value=1.7e-19  Score=139.24  Aligned_cols=102  Identities=17%  Similarity=0.459  Sum_probs=88.7

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .+.++ +.++|++.+.   +++++|+||++||++|+.+.|.++++++.+.    ++.|+.||++++.+++++|+|.++||
T Consensus         6 ~v~~l-~~~~~~~~~~---~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   81 (111)
T 3uvt_A            6 TVLAL-TENNFDDTIA---EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT   81 (111)
T ss_dssp             CSEEC-CTTTHHHHHH---SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             cceEc-ChhhHHHHhc---CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccE
Confidence            45555 4578999884   7899999999999999999999999999873    69999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|++|+ .+.. ..|..+.++|.++|++++
T Consensus        82 ~~~~~~g~-~~~~-~~g~~~~~~l~~~l~~~a  111 (111)
T 3uvt_A           82 LLLFRGGK-KVSE-HSGGRDLDSLHRFVLSQA  111 (111)
T ss_dssp             EEEEETTE-EEEE-ECSCCSHHHHHHHHHHHC
T ss_pred             EEEEeCCc-EEEe-ccCCcCHHHHHHHHHhcC
Confidence            99999886 3444 448899999999998863

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=1.2e-19  Score=146.56  Aligned_cols=104  Identities=13%  Similarity=0.341  Sum_probs=90.9

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----cEEEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .+.++ +.++|.+.+  ..++++||+||++||++|+.+.|.|+++++.+.+    +.|+.||++++.+++++|+|.++||
T Consensus        18 ~v~~l-~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   94 (140)
T 2dj1_A           18 GVWVL-NDGNFDNFV--ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT   94 (140)
T ss_dssp             TEEEC-CTTTHHHHH--TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSE
T ss_pred             CCEEc-ChHhHHHHH--hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCe
Confidence            56666 557898887  4589999999999999999999999999988743    9999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+  +..+. |..+.++|.++|++++..
T Consensus        95 ~~~~~~G~--~~~~~-g~~~~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           95 IKILKKGQ--AVDYD-GSRTQEEIVAKVREVSQP  125 (140)
T ss_dssp             EEEEETTE--EEECC-SCCCHHHHHHHHHHHHSS
T ss_pred             EEEEECCc--EEEcC-CCCCHHHHHHHHHHhcCC
Confidence            99998886  55554 889999999999998743

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.81  E-value=2.1e-19  Score=138.49  Aligned_cols=104  Identities=14%  Similarity=0.358  Sum_probs=89.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.+++. ++|.+.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||+++
T Consensus         3 ~v~~l~~-~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   80 (108)
T 2trx_A            3 KIIHLTD-DSFDTDVL-KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TEEECCT-TTHHHHTT-TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred             cceecch-hhHHHHHH-hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEE
Confidence            4555554 67876664 468999999999999999999999999999996 69999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+  +.....|..+.++|.++|++++
T Consensus        81 ~~~G~--~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           81 FKNGE--VAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EETTE--EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EeCCE--EEEEEecCCCHHHHHHHHHHhh
Confidence            98886  3334447889999999998864

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.81  E-value=2.7e-19  Score=137.23  Aligned_cols=102  Identities=20%  Similarity=0.421  Sum_probs=86.8

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.++++ ++|.+.+  ..+++++|+||++||++|+.+.|.++++++++++ +.|+.||++++.+++++|+|.++||+++|
T Consensus         2 v~~l~~-~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            2 TMTLTD-ANFQQAI--QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECT-TTHHHHH--SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccH-HhHHHHH--hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence            344555 5788655  4679999999999999999999999999999965 99999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+  +.....|..+.++|.++|++++
T Consensus        79 ~~G~--~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           79 KGGR--PVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTE--EEEEEESCCCHHHHHHHTTTTT
T ss_pred             eCCe--EEEEEecCCCHHHHHHHHHHHh
Confidence            8886  3333348889999999988764

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.81  E-value=3e-19  Score=137.01  Aligned_cols=104  Identities=19%  Similarity=0.402  Sum_probs=88.4

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.+++. ++|.+.+  ..+++++|+||++||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++||+++|
T Consensus         3 v~~l~~-~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            3 PIEVTD-QNFDETL--GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILF   79 (109)
T ss_dssp             CEECCT-TTHHHHH--HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEccH-hHHHHHh--cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEE
Confidence            455554 6788666  357899999999999999999999999999997 599999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ++|+  +.....|..+.++|.++|+++++.
T Consensus        80 ~~g~--~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           80 KDGQ--PVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             ETTE--EEEEEESCCCHHHHHHHHHTTC--
T ss_pred             eCCc--EeeeEeCCCCHHHHHHHHHHHhhh
Confidence            8886  333334788999999999998753

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.81  E-value=1.3e-19  Score=149.13  Aligned_cols=106  Identities=10%  Similarity=0.061  Sum_probs=88.6

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +..+.+.++|++.+....+++|+|+|||+||++|+.+.|.++++++++ +++.|+.||++++++++++|+|.++||+++|
T Consensus         5 l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~   84 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF   84 (142)
T ss_dssp             SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred             HhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEE
Confidence            566788899998886546899999999999999999999999999998 4699999999999999999999999999999


Q ss_pred             eCCCceeee--------ecCCcc-CHHHHHHHHHhhC
Q 022923          180 RGAHGRVCS--------FSCTNA-TIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~--------~~~g~~-~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..        ...|.. +.++|.++|++++
T Consensus        85 ~~G~-~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           85 FRNK-HIMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             ETTE-EEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             ECCc-EEEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence            9987 3321        112333 4788888888764

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.81  E-value=2.7e-19  Score=135.88  Aligned_cols=99  Identities=23%  Similarity=0.357  Sum_probs=87.5

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCce
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR  185 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~  185 (290)
                      +.++|.+.+  ..+++++|+||++||++|+.+.|.++++++.++++.|+.||++++.+++++|+|.++||+++|++|+  
T Consensus         5 ~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~--   80 (104)
T 2e0q_A            5 DSKNFDSFL--ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE--   80 (104)
T ss_dssp             CTTTHHHHH--HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTE--
T ss_pred             CHHHHHHHH--hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCe--
Confidence            346888888  3588999999999999999999999999999988999999999999999999999999999998886  


Q ss_pred             eeeecCCccCHHHHHHHHHhhCC
Q 022923          186 VCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       186 v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +.....|..+.+++.++|+++++
T Consensus        81 ~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           81 PVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EhhhccCCCCHHHHHHHHHHHhc
Confidence            33333478899999999998753

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.5e-19  Score=144.48  Aligned_cols=106  Identities=14%  Similarity=0.328  Sum_probs=90.8

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-----CcEEEEEeccccHhHHHhcCcccc
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-----DVQFLQVNYEEHKSMCYSLNVHVL  173 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-----~v~~~~Vd~d~~~~l~~~~~I~~~  173 (290)
                      ..+.+++. ++|.+.+.. .++++||+||++||++|+.+.|.+.++++++.     ++.|+.||++++.+++++|+|.++
T Consensus         7 ~~v~~l~~-~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   84 (133)
T 1x5d_A            7 GDVIELTD-DSFDKNVLD-SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF   84 (133)
T ss_dssp             CSCEECCT-THHHHHTTT-SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred             CcCEEcCH-hhHHHHHhc-CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence            35666665 678887653 57999999999999999999999999999874     699999999999999999999999


Q ss_pred             CceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          174 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       174 PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ||+++|++|+ .+..+. |..+.++|.++|++++.
T Consensus        85 Pt~~~~~~g~-~~~~~~-G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           85 PTIKIFQKGE-SPVDYD-GGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             SEEEEEETTE-EEEEEC-SCCSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCC-ceEEec-CCCCHHHHHHHHHHHhh
Confidence            9999999976 444444 78899999999998863

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.80  E-value=3.6e-19  Score=138.25  Aligned_cols=104  Identities=19%  Similarity=0.415  Sum_probs=88.8

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.++++ ++|.+.+. ..+++++|+||++||++|+.+.|.+.+++++++ ++.|+.||++++.+++++|+|.++||+++
T Consensus         6 ~v~~l~~-~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   83 (112)
T 1t00_A            6 TLKHVTD-DSFEQDVL-KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNV   83 (112)
T ss_dssp             CCEEECT-TTHHHHTT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eEEecch-hhHHHHHh-hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEE
Confidence            4566666 56776664 358999999999999999999999999999994 69999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+  +.....|..+.++|.++|++++
T Consensus        84 ~~~G~--~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           84 YQGGE--VAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             EETTE--EEEEEESCCCHHHHHHHTHHHH
T ss_pred             EeCCE--EEEEEeCCCCHHHHHHHHHHHh
Confidence            98886  3333348889999999998875

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.80  E-value=2.8e-19  Score=149.00  Aligned_cols=106  Identities=14%  Similarity=0.296  Sum_probs=91.6

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      ..+.+++ .++|.+.+  ..++++||+||++||++|+.+.|.|++++++++ ++.|+.||++++++++++|+|+++||++
T Consensus        47 ~~~~~l~-~~~f~~~~--~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  123 (155)
T 2ppt_A           47 GKVAGID-PAILARAE--RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFI  123 (155)
T ss_dssp             SSEEECC-HHHHHHHT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEE
T ss_pred             CCCccCC-HHHHHHHH--hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEE
Confidence            3456664 57888888  578999999999999999999999999999986 6999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|++|+  +.....|..+.++|.++|+++++.
T Consensus       124 ~~~~G~--~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          124 LFHKGR--ELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEETTE--EEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEeCCe--EEEEecCCCCHHHHHHHHHHHhcc
Confidence            998886  333344888999999999998643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.80  E-value=1.5e-19  Score=163.46  Aligned_cols=108  Identities=15%  Similarity=0.261  Sum_probs=94.4

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .+.++++++ ++|++.+..+.+++|+|+||++||++|+.+.|.++++++++++ +.|++||++++++++++|+|.++||+
T Consensus         6 ~~~v~~~~~-~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            6 VENIVNINE-SNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             CTTEEECCT-TTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CCccEECCH-HHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            346777766 7899977555689999999999999999999999999999976 99999999999999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ++|++|+ .+..+. |..+.+.+.++|.++++
T Consensus        85 ~~~~~G~-~~~~~~-g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           85 YLFQNGQ-PVDGFQ-GPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             EEEETTE-EEEEEE-SCCCHHHHHHHHHHHSC
T ss_pred             EEEECCE-EEEEee-CCCCHHHHHHHHHHHcC
Confidence            9999886 344444 88999999999999873

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.80  E-value=4.8e-19  Score=137.54  Aligned_cols=106  Identities=15%  Similarity=0.315  Sum_probs=91.2

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      ..+.++ +.++|.+.+. ..+++++|+||++||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++||++
T Consensus         7 ~~v~~l-~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~   84 (115)
T 1thx_A            7 KGVITI-TDAEFESEVL-KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALR   84 (115)
T ss_dssp             CSEEEC-CGGGHHHHTT-TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEe-eccchhhHhh-cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEE
Confidence            346666 4578887764 468999999999999999999999999999996 5999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +|++|+  +.....|..+.++|.++|+++++
T Consensus        85 ~~~~G~--~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           85 LVKGEQ--ILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEETTE--EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEcCCE--EEEEecCCCCHHHHHHHHHHHhc
Confidence            998886  33333478899999999998764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.80  E-value=7.8e-19  Score=139.20  Aligned_cols=106  Identities=23%  Similarity=0.408  Sum_probs=90.1

Q ss_pred             CCeeEeC-CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923           99 PNMREVA-SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        99 ~~v~~I~-s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      +.+..+. +.++|.+.+.. .++++||+||++||++|+.+.|.+++++++++++.|+.||++++.+++++|+|.++||++
T Consensus         3 ~~v~~~~g~~~~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   81 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKE-APGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALF   81 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHH-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcceEecCCHHHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            4577787 88899876654 589999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEeC----CCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          178 FYRG----AHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       178 ~~~~----G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +|++    |+  +..... +...++|++.|+++..
T Consensus        82 ~~~~~~~~G~--~~~~~~-G~~~~~l~~~~~~~~~  113 (118)
T 2f51_A           82 FVKKEGNEIK--TLDQFV-GADVSRIKADIEKFKH  113 (118)
T ss_dssp             EEEEETTEEE--EEEEEE-SCCHHHHHHHHHHHC-
T ss_pred             EEeCCCCcce--EEEeec-CCCHHHHHHHHHHhhh
Confidence            9987    54  443332 4456679999999874

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.80  E-value=8.4e-19  Score=142.06  Aligned_cols=108  Identities=19%  Similarity=0.380  Sum_probs=92.2

Q ss_pred             CeeEeCCHhHHHHHHHh----------cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhc
Q 022923          100 NMREVASAQDLVESLWH----------AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSL  168 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~----------~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~  168 (290)
                      .+.+++ .++|.+.+..          ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|
T Consensus        10 ~v~~l~-~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~   88 (136)
T 2l5l_A           10 KVIHLT-KAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAF   88 (136)
T ss_dssp             SEEEEC-HHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHT
T ss_pred             ceEEec-chHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHc
Confidence            466664 4788888753          147899999999999999999999999999996 5999999999999999999


Q ss_pred             CccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCCCCC
Q 022923          169 NVHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTPDRC  211 (290)
Q Consensus       169 ~I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~  211 (290)
                      +|.++||+++| ++|+  +..+. |..+.++|.++|+++++...
T Consensus        89 ~v~~~Pt~~~~~~~G~--~~~~~-G~~~~~~l~~~l~~~~~~~~  129 (136)
T 2l5l_A           89 GIRSIPSILFIPMEGK--PEMAQ-GAMPKASFKKAIDEFLLKKE  129 (136)
T ss_dssp             TCCSSCEEEEECSSSC--CEEEE-SCCCHHHHHHHHHHHHTSCT
T ss_pred             CCCCCCEEEEECCCCc--EEEEe-CCCCHHHHHHHHHHHhhccC
Confidence            99999999999 6776  44444 88999999999999975533

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.80  E-value=5.9e-19  Score=135.76  Aligned_cols=99  Identities=16%  Similarity=0.389  Sum_probs=86.5

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  184 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~  184 (290)
                      +.++|.+.+.. .+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||+++|++|+ 
T Consensus         7 ~~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~-   84 (107)
T 1dby_A            7 NDDTFKNVVLE-SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGK-   84 (107)
T ss_dssp             CHHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSS-
T ss_pred             cHHHHHHHHhc-CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCE-
Confidence            44678877653 58999999999999999999999999999996 5999999999999999999999999999998887 


Q ss_pred             eeeeecCCccCHHHHHHHHHhhC
Q 022923          185 RVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       185 ~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                       +.....|..+.++|.++|++++
T Consensus        85 -~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           85 -KCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             -EEEEEESCCCHHHHHHHHHHHC
T ss_pred             -EEEEEeCCCCHHHHHHHHHHHh
Confidence             3333348889999999999875

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=1.9e-19  Score=143.61  Aligned_cols=106  Identities=22%  Similarity=0.377  Sum_probs=91.4

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      ..+.+++. ++|++.+.. .++++||+||++||++|+.+.|.++++++++++ +.|+.||++++.+++++|+|.++||++
T Consensus        17 ~~v~~l~~-~~f~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~   94 (130)
T 2dml_A           17 DDVIELTP-SNFNREVIQ-SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK   94 (130)
T ss_dssp             SSSEECCT-TTHHHHTTT-CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred             CCcEECCH-HHHHHHHhc-CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEE
Confidence            35666655 678886653 588999999999999999999999999999976 999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|++|+..+..+. |..+.++|.++|.+++
T Consensus        95 ~~~~~~~~~~~~~-G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           95 IFGANKNKPEDYQ-GGRTGEAIVDAALSAL  123 (130)
T ss_dssp             EESSCTTSCEECC-SCCSHHHHHHHHHHHH
T ss_pred             EEeCCCCeEEEee-cCCCHHHHHHHHHHHH
Confidence            9988873244444 7889999999998875

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=2.7e-19  Score=145.56  Aligned_cols=105  Identities=17%  Similarity=0.264  Sum_probs=88.3

Q ss_pred             CCCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           97 LQPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ....+.+| +.++|.+.+... .++++||+|||+||++|+.+.|.|++++++|+++.|+.||++++.   ++|+|.++||
T Consensus         8 ~~g~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~Pt   83 (135)
T 2dbc_A            8 KFGELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCLPT   83 (135)
T ss_dssp             CCCSCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCCSE
T ss_pred             CCCceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCCCE
Confidence            34578888 888999988643 347999999999999999999999999999999999999999875   7999999999


Q ss_pred             eEEEeCCCceeeeecCCcc-------CHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSCTNA-------TIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~-------~~~~l~~~L~k~~  207 (290)
                      +++|++|+ .+..+. |..       +.++|+++|.++.
T Consensus        84 ~~~~~~G~-~v~~~~-G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           84 IFVYKNGQ-IEGKFI-GIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EEEESSSS-CSEEEE-STTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEEEECCE-EEEEEE-eEEeeCCCcCCHHHHHHHHHHcC
Confidence            99999887 333333 433       7888999988874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.80  E-value=5.8e-19  Score=135.37  Aligned_cols=104  Identities=18%  Similarity=0.331  Sum_probs=88.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.+++. ++|.+.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||+++
T Consensus         3 ~v~~l~~-~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   80 (107)
T 2i4a_A            3 HTLAVSD-SSFDQDVL-KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLML   80 (107)
T ss_dssp             CEEECCT-TTHHHHTT-TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEE
T ss_pred             ceeecch-hhhhHHHH-hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEE
Confidence            3455544 67877664 468999999999999999999999999999986 69999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+  +.....|..+.++|.++|++++
T Consensus        81 ~~~G~--~~~~~~G~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           81 VRDGK--VIDKKVGALPKSQLKAWVESAQ  107 (107)
T ss_dssp             EETTE--EEEEEESCCCHHHHHHHHHHTC
T ss_pred             EeCCE--EEEEecCCCCHHHHHHHHHhcC
Confidence            98886  3333447889999999998763

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.80  E-value=5.1e-19  Score=144.98  Aligned_cols=104  Identities=21%  Similarity=0.440  Sum_probs=91.1

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+..++. ++|.+.+  ..+++++|+||++||++|+.+.|.|+++++++ +++.|+.||++++.+++++|+|.++||+++
T Consensus        39 ~v~~l~~-~~~~~~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~  115 (148)
T 3p2a_A           39 EVINATA-ETLDKLL--QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIML  115 (148)
T ss_dssp             CCEECCT-TTHHHHT--TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CceecCH-HHHHHHH--hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEE
Confidence            4555544 7888887  57899999999999999999999999999998 469999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |++|+  +.....|..+.++|.++|++++.
T Consensus       116 ~~~G~--~~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          116 YRNGK--MIDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             EETTE--EEEEESSCCCHHHHHHHHHHHHH
T ss_pred             EECCe--EEEEEeCCCCHHHHHHHHHHHhc
Confidence            99886  44444488999999999999864

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.80  E-value=6e-19  Score=142.87  Aligned_cols=107  Identities=17%  Similarity=0.320  Sum_probs=90.4

Q ss_pred             CCeeEeCCHhHHHHHHHhc----------CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHh
Q 022923           99 PNMREVASAQDLVESLWHA----------GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS  167 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~----------~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~  167 (290)
                      ..+.++ +.++|.+.+...          .++++||+||++||++|+.+.|.|.++++.|+ ++.|+.||++++.+++++
T Consensus        22 ~~v~~l-~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  100 (141)
T 3hxs_A           22 SGTIHL-TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARD  100 (141)
T ss_dssp             -CCEEC-CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             CCcccc-cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHH
Confidence            355565 557888887532          37999999999999999999999999999997 599999999999999999


Q ss_pred             cCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          168 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       168 ~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |+|.++||+++|+.++ ++..+. |..+.++|.++|++++.
T Consensus       101 ~~v~~~Pt~~~~~~~g-~~~~~~-G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          101 FGIQSIPTIWFVPMKG-EPQVNM-GALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             TTCCSSSEEEEECSSS-CCEEEE-SCCCHHHHHHHHHHTTC
T ss_pred             cCCCCcCEEEEEeCCC-CEEEEe-CCCCHHHHHHHHHHHHc
Confidence            9999999999995443 345444 88999999999999864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.79  E-value=5.6e-19  Score=142.89  Aligned_cols=109  Identities=22%  Similarity=0.329  Sum_probs=94.2

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCCCcEEEEEec----cccHhHHHhcCc
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNY----EEHKSMCYSLNV  170 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~~v~~~~Vd~----d~~~~l~~~~~I  170 (290)
                      .+.+..+.+.+++...+....++++||+||++||++|+.+.|.+   .++++.++++.|+.||+    +++.+++++|+|
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v   89 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV   89 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCC
Confidence            45778899999999988765689999999999999999999999   99999999999999999    667899999999


Q ss_pred             cccCceEEE-eCCCceee--eecCCccCHHHHHHHHHhhCC
Q 022923          171 HVLPFFRFY-RGAHGRVC--SFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       171 ~~~PT~~~~-~~G~~~v~--~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      .++||+++| ++|+  +.  ....|..+.++|.++|++.-+
T Consensus        90 ~~~Pt~~~~d~~G~--~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           90 LGLPTILFFDGQGQ--EHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             CSSSEEEEECTTSC--BCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             CCCCEEEEECCCCC--EeeeeeeeeccCHHHHHHHHHhcCc
Confidence            999999999 6665  43  334488999999999998754

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.79  E-value=3e-19  Score=143.85  Aligned_cols=104  Identities=13%  Similarity=0.320  Sum_probs=89.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.+++ .++|++.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||+++
T Consensus        23 ~v~~l~-~~~f~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  100 (128)
T 2o8v_B           23 KIIHLT-DDSFDTDVL-KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL  100 (128)
T ss_dssp             CSEEEC-TTTHHHHTT-TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEE
T ss_pred             ccEecC-hhhHHHHHH-hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            456664 467887664 468999999999999999999999999999996 69999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+  +.....|..+.++|.++|++++
T Consensus       101 ~~~G~--~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          101 FKNGE--VAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EETTE--EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EeCCE--EEEEEcCCCCHHHHHHHHHHhh
Confidence            98886  3333447889999999998864

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.79  E-value=8.6e-19  Score=133.96  Aligned_cols=99  Identities=21%  Similarity=0.386  Sum_probs=85.9

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  184 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~  184 (290)
                      +.++|.+.+.. .+++++|+||++||++|+.+.|.++++++++++ +.|+.||++++++++++|+|.++||+++|++|+ 
T Consensus         6 ~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~-   83 (105)
T 1fb6_A            6 NDSSWKEFVLE-SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGE-   83 (105)
T ss_dssp             CTTTHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE-
T ss_pred             hhhhHHHHHhc-CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCe-
Confidence            34678876653 589999999999999999999999999999974 999999999999999999999999999998886 


Q ss_pred             eeeeecCCccCHHHHHHHHHhhC
Q 022923          185 RVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       185 ~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                       +.....|..+.++|.++|++++
T Consensus        84 -~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           84 -RKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             -EEEEEEECCCHHHHHHHHHHHC
T ss_pred             -EEEEEecCCCHHHHHHHHHhhC
Confidence             3333347889999999998763

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.79  E-value=4.9e-19  Score=144.27  Aligned_cols=104  Identities=22%  Similarity=0.297  Sum_probs=90.3

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.+++ .++|.+.+.. .++++||+||++||++|+.+.|.|+++++.+++ +.|+.||++++++++++|+|.++||+++
T Consensus         7 ~v~~l~-~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   84 (140)
T 3hz4_A            7 SIIEFE-DMTWSQQVED-SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF   84 (140)
T ss_dssp             TEEEEC-HHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEE
T ss_pred             ceEEcc-hHhHHHHHHh-CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEE
Confidence            455665 4678855544 589999999999999999999999999999876 9999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+ .+..+ .|..+.++|.++|++++
T Consensus        85 ~~~G~-~~~~~-~G~~~~~~l~~~l~~~l  111 (140)
T 3hz4_A           85 FCHGR-PVWEQ-VGQIYPSILKNAVRDML  111 (140)
T ss_dssp             EETTE-EEEEE-ESSCCHHHHHHHHHHHH
T ss_pred             EeCCc-EEEEE-cCCCCHHHHHHHHHHHh
Confidence            99887 34444 48889999999999886

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=7.5e-19  Score=139.85  Aligned_cols=103  Identities=19%  Similarity=0.356  Sum_probs=88.2

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ...+.+++ .++|++.+   + +.+||+||++||++|+.+.|.+++++++++  ++.|+.||++++.+++++|+|.++||
T Consensus         6 ~~~v~~l~-~~~f~~~~---~-~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   80 (126)
T 1x5e_A            6 SGNVRVIT-DENWRELL---E-GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPT   80 (126)
T ss_dssp             CCSEEECC-TTTHHHHT---S-SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCccEEec-HHHHHHHh---C-CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCE
Confidence            34577774 47888765   2 349999999999999999999999999886  59999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +++|++|+  +..+ .|..+.++|.++|++++.
T Consensus        81 ~~~~~~G~--~~~~-~G~~~~~~l~~~l~~~~~  110 (126)
T 1x5e_A           81 IYHCKDGE--FRRY-QGPRTKKDFINFISDKEW  110 (126)
T ss_dssp             EEEEETTE--EEEC-CSCCCHHHHHHHHHTCGG
T ss_pred             EEEEeCCe--EEEe-ecCCCHHHHHHHHHHHhh
Confidence            99998886  5444 478899999999998863

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.79  E-value=4.7e-19  Score=143.69  Aligned_cols=103  Identities=11%  Similarity=0.153  Sum_probs=89.4

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------cccHhHHHhcC
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------EEHKSMCYSLN  169 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------d~~~~l~~~~~  169 (290)
                      ..+.++ +.++|++.+.   + +++|+|||+||++|+.+.|.+++++++++ +.|+.||+         +++.+++++|+
T Consensus        16 ~~v~~l-~~~~~~~~~~---~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~   89 (135)
T 3emx_A           16 GRLIYI-TPEEFRQLLQ---G-DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAG   89 (135)
T ss_dssp             TEEEEC-CHHHHHHHHT---S-SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             Cceeec-CHHHHHHHhC---C-cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcC
Confidence            356666 6689999882   3 99999999999999999999999999998 99999999         88999999999


Q ss_pred             ccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          170 VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       170 I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |.++||+++|++|+  +.....|..+.+.+.+++++++..
T Consensus        90 v~~~Pt~~~~~~G~--~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           90 VEGTPTLVFYKEGR--IVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             CCSSSEEEEEETTE--EEEEEESCCCHHHHHHHHHHHC--
T ss_pred             CceeCeEEEEcCCE--EEEEEeCCCCHHHHHHHHHHHhCC
Confidence            99999999999886  444445889999999999999754

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.79  E-value=3.9e-19  Score=141.23  Aligned_cols=102  Identities=13%  Similarity=0.089  Sum_probs=90.0

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccc-
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHV-  172 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~-  172 (290)
                      ..++.+|++.++|++.+.  .+++++|+|||+|||+|+.+.|.++++++. +++.|++||++++++    ++++|+|++ 
T Consensus         5 ~~~~~~i~s~e~f~~ii~--~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~   81 (112)
T 3iv4_A            5 QGVAIKLSSIDQFEQVIE--ENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHE   81 (112)
T ss_dssp             GGCEEECCSHHHHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred             hcceeecCCHHHHHHHHh--cCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccC
Confidence            457899999999999885  389999999999999999999999999987 789999999999976    899999995 


Q ss_pred             cCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      .||+++|++|+ .+.....+..+.+.|.++|
T Consensus        82 sPq~il~k~G~-~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           82 SPQAFYFVNGE-MVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             SSEEEEEETTE-EEEEEEGGGCSHHHHHHHT
T ss_pred             CCeEEEEECCE-EEEEeeccccCHHHHHHhh
Confidence            99999999998 4555555788888887764

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.78  E-value=1.1e-18  Score=137.67  Aligned_cols=106  Identities=21%  Similarity=0.348  Sum_probs=88.3

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.+++ .++|.+.+. ..+++++|+||++||++|+.+.|.++++++.++ ++.|+.||++++.+++++|+|.++||+++
T Consensus         4 ~v~~l~-~~~f~~~~~-~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (122)
T 3aps_A            4 ASIDLT-PQTFNEKVL-QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKL   81 (122)
T ss_dssp             CSEECC-HHHHHHHTT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             chhcCC-HHHHHHHHh-cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEE
Confidence            455555 577866554 368999999999999999999999999999987 69999999999999999999999999999


Q ss_pred             EeCCCceeeeec---CCccCHHHHHHHHHhhCC
Q 022923          179 YRGAHGRVCSFS---CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       179 ~~~G~~~v~~~~---~g~~~~~~l~~~L~k~~~  208 (290)
                      |++|+. +..+.   .|..+.++|.++|++++.
T Consensus        82 ~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           82 YQYERA-KKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EeCCCc-cceeeccccCcCCHHHHHHHHHHHHH
Confidence            987762 33333   234799999999998864

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.78  E-value=2.1e-18  Score=147.92  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeC-------CCChHHHHHHHHHHHHHHHC------CCcEEEEEeccccHhHH
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMN------PDVQFLQVNYEEHKSMC  165 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA-------~WC~~Ck~~~p~l~~la~~~------~~v~~~~Vd~d~~~~l~  165 (290)
                      ..++++++ ++|++.+....+.+|||+|||       +||++|+.+.|.|++++++|      +++.|++||+|++++++
T Consensus        18 ~~vi~lt~-~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           18 TGVITVTA-DNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TSEEECCT-TTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             CCCEECCH-HHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            45777765 689987754457789999999       49999999999999999987      45999999999999999


Q ss_pred             HhcCccccCceEEEeCCCcee-----------eeec--CC-ccCHHHHHHHHHhhCCC
Q 022923          166 YSLNVHVLPFFRFYRGAHGRV-----------CSFS--CT-NATIKKFKDALAKHTPD  209 (290)
Q Consensus       166 ~~~~I~~~PT~~~~~~G~~~v-----------~~~~--~g-~~~~~~l~~~L~k~~~~  209 (290)
                      ++|+|+++||+++|++|++..           ..|.  .+ +++++.|.+||.+.++.
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~  154 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI  154 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence            999999999999999997332           3331  24 79999999999998864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.78  E-value=1.2e-18  Score=136.83  Aligned_cols=107  Identities=16%  Similarity=0.338  Sum_probs=90.6

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      ...+.++++ ++|.+.+.. .+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||+
T Consensus        11 ~~~v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~   88 (121)
T 2i1u_A           11 KSATIKVTD-ASFATDVLS-SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL   88 (121)
T ss_dssp             -CCSEECCT-TTHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cccceecCH-HHHHHHHHh-CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            345667766 567766543 58899999999999999999999999999985 599999999999999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ++|++|+  +.....|..+.++|.++|+++++
T Consensus        89 ~~~~~g~--~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           89 ILFKDGQ--PVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEETTE--EEEEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEECCE--EEEEecCCCCHHHHHHHHHHHHh
Confidence            9999886  33334488899999999988764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.78  E-value=7.1e-19  Score=140.89  Aligned_cols=88  Identities=16%  Similarity=0.333  Sum_probs=79.4

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccC
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNAT  195 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~  195 (290)
                      .++++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||+++|++|+  +.....|..+
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~--~~~~~~G~~~  117 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKT--MLARKDHFVS  117 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTE--EEEEESSCCC
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCE--EEEEecCCCC
Confidence            468999999999999999999999999999986 6999999999999999999999999999998886  4444458899


Q ss_pred             HHHHHHHHHhh
Q 022923          196 IKKFKDALAKH  206 (290)
Q Consensus       196 ~~~l~~~L~k~  206 (290)
                      .++|.++|+++
T Consensus       118 ~~~l~~~l~~~  128 (128)
T 3ul3_B          118 SNDLIALIKKH  128 (128)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999999764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.78  E-value=4.6e-19  Score=138.24  Aligned_cols=105  Identities=22%  Similarity=0.438  Sum_probs=90.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .+.+++ .++|.+.+.  ++++++|+||++||++|+.+.|.++++++.+.    ++.|+.||++++.+++++|+|.++||
T Consensus         8 ~v~~l~-~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   84 (120)
T 1mek_A            8 HVLVLR-KSNFAEALA--AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             TEEECC-TTTHHHHHH--HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CcEEec-hhhHHHHHc--cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccE
Confidence            455554 468888774  57999999999999999999999999999874    59999999999999999999999999


Q ss_pred             eEEEeCCCcee--eeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRV--CSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v--~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+ .+  ..+ .|..+.++|.++|+++++.
T Consensus        85 ~~~~~~g~-~~~~~~~-~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           85 IKFFRNGD-TASPKEY-TAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEESSC-SSSCEEC-CCCSSHHHHHHHHHTTSCC
T ss_pred             EEEEeCCC-cCCcccc-cCccCHHHHHHHHHhccCC
Confidence            99999887 33  334 4788999999999998754

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.78  E-value=2e-18  Score=151.60  Aligned_cols=107  Identities=13%  Similarity=0.333  Sum_probs=92.3

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.. .+.++|++.+.. +++++||+||++||++|+.+.|.|+++++++++ +.|+.||++++.+++++|+|.++||+++
T Consensus        13 ~~~~-lt~~~f~~~v~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~   90 (222)
T 3dxb_A           13 KIIH-LTDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   90 (222)
T ss_dssp             CCEE-CCTTTHHHHHTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEE
T ss_pred             Ccee-CCHHHHHHHHHh-cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence            4444 455789887654 689999999999999999999999999999976 9999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhCCCC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHTPDR  210 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~  210 (290)
                      |++|+ .+.. ..|..+.++|.++|++++...
T Consensus        91 ~~~G~-~~~~-~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           91 FKNGE-VAAT-KVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             EETTE-EEEE-EESCCCHHHHHHHHHHHSCCS
T ss_pred             EECCe-EEEE-eccccChHHHHHHHHhhcccc
Confidence            99886 3334 448899999999999998543

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.77  E-value=4.5e-18  Score=135.30  Aligned_cols=93  Identities=9%  Similarity=0.150  Sum_probs=82.7

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEe--ccccHhHHHhcCccccCceEEEe-CCCceeeeecCC
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVN--YEEHKSMCYSLNVHVLPFFRFYR-GAHGRVCSFSCT  192 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd--~d~~~~l~~~~~I~~~PT~~~~~-~G~~~v~~~~~g  192 (290)
                      ..+++++|+||++||++|+.+.|.++++++++ +++.|+.||  ++++.+++++|+|.++||+++|+ +|+  +.....|
T Consensus        24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~--~~~~~~G  101 (126)
T 2l57_A           24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGN--KFYVHQG  101 (126)
T ss_dssp             CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCC--EEEEEES
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCC--EEEEecC
Confidence            46899999999999999999999999999999 679999999  99999999999999999999998 676  4333447


Q ss_pred             ccCHHHHHHHHHhhCCCCC
Q 022923          193 NATIKKFKDALAKHTPDRC  211 (290)
Q Consensus       193 ~~~~~~l~~~L~k~~~~~~  211 (290)
                      ..+.++|.++|++++....
T Consensus       102 ~~~~~~l~~~l~~~~~~~~  120 (126)
T 2l57_A          102 LMRKNNIETILNSLGVKEG  120 (126)
T ss_dssp             CCCHHHHHHHHHHHCCCCC
T ss_pred             CCCHHHHHHHHHHHhcccc
Confidence            8999999999999986543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.77  E-value=2.4e-18  Score=150.77  Aligned_cols=130  Identities=13%  Similarity=0.306  Sum_probs=102.5

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----cEEEEEeccccHhHHHhcCccccC
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLP  174 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d~~~~l~~~~~I~~~P  174 (290)
                      ..+.+++. ++|++.+  .++++++|+|||+||++|+.+.|.|+++++.+++    +.|+.||++++.+++++|+|+++|
T Consensus        15 ~~v~~l~~-~~~~~~~--~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   91 (241)
T 3idv_A           15 NGVLVLND-ANFDNFV--ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYP   91 (241)
T ss_dssp             TTEEEECT-TTHHHHH--TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCcEEecc-cCHHHHH--hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCC
Confidence            35666655 6888888  5689999999999999999999999999988743    999999999999999999999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCC--CCCcHHHHHHHHhCCCCc
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPT--KGLEEKELLALAANKDLS  234 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~--~~~~~~e~~~l~~~~~~~  234 (290)
                      |+++|++|+  ...+. |..+.++|.++|+++........+.  ..++.++++.+....+.-
T Consensus        92 t~~~~~~g~--~~~~~-g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (241)
T 3idv_A           92 TIKILKKGQ--AVDYE-GSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADII  150 (241)
T ss_dssp             EEEEEETTE--EEECC-SCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEE
T ss_pred             EEEEEcCCC--ccccc-CcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeE
Confidence            999999886  44544 8899999999999987543222221  134556666666555433

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.76  E-value=1.7e-19  Score=143.51  Aligned_cols=109  Identities=21%  Similarity=0.404  Sum_probs=94.9

Q ss_pred             CCCeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .+.+.++++.++|.+.+..  ..+++++|+||++||++|+.+.|.|++++++++++.|+.||++++.+++++|+|.++||
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt   92 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPT   92 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSCC
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccce
Confidence            3468888888999998874  25899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+  +.....| .+.++|.++|++++..
T Consensus        93 ~~~~~~g~--~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           93 FLFIKDGA--EADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             CCBCTTTT--CCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             EEEEeCCe--EEEEEeC-CCHHHHHHHHHHHHhc
Confidence            99998887  3333334 5788999999998754

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.2e-19  Score=145.52  Aligned_cols=102  Identities=14%  Similarity=0.180  Sum_probs=84.2

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCcc------
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVH------  171 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~------  171 (290)
                      .+.+++ .++|.+.+....+++++|+|||+||++|+.+.|.|++++++|.  ++.|+.||++++++++++|+|.      
T Consensus         8 ~v~~l~-~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~   86 (137)
T 2dj0_A            8 YIKYFN-DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTK   86 (137)
T ss_dssp             CCEECC-TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSS
T ss_pred             eEEEcc-HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcC
Confidence            455555 4789999877667799999999999999999999999999985  6999999999999999999999      


Q ss_pred             ccCceEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923          172 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA  204 (290)
Q Consensus       172 ~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~  204 (290)
                      ++||+++|++|+ .+..+ .|..+.++|.++|.
T Consensus        87 ~~Pt~~~~~~G~-~~~~~-~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           87 QLPTLILFQGGK-EAMRR-PQIDKKGRAVSWTF  117 (137)
T ss_dssp             CSSEEEEESSSS-EEEEE-SCBCSSSCBCCCCC
T ss_pred             CCCEEEEEECCE-EEEEe-cCcCchHHHHHHHh
Confidence            999999999887 33333 36666555554443

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.76  E-value=5.2e-18  Score=137.70  Aligned_cols=104  Identities=19%  Similarity=0.368  Sum_probs=79.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.+++ .++|.+.+.. .++ ++|+||++||++|+.+.|.|++++++++ ++.|+.||++++.+++++|+|.++||+++
T Consensus        34 ~v~~l~-~~~~~~~~~~-~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  110 (140)
T 1v98_A           34 WVVEAD-EKGFAQEVAG-APL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVL  110 (140)
T ss_dssp             ----------------C-CCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccccCC-HHHHHHHHHc-CCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEE
Confidence            445554 4678877753 345 9999999999999999999999999997 69999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |++|+  +.....|..+.++|.++|++++.
T Consensus       111 ~~~G~--~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          111 FRRGA--PVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EETTE--EEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EeCCc--EEEEEeCCCCHHHHHHHHHHHHc
Confidence            99886  33333488899999999998864

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.75  E-value=3.4e-18  Score=150.76  Aligned_cols=107  Identities=21%  Similarity=0.352  Sum_probs=92.2

Q ss_pred             CCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .+.+.+|.+.++|.+.+... .+++|||+||++||++|+.+.|.|.+++++|+++.|++||++ ++.++++|+|.++||+
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~PTl  176 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVLPTL  176 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGCSEE
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCCCEE
Confidence            45788998999999998743 358999999999999999999999999999999999999999 8889999999999999


Q ss_pred             EEEeCCCceeeeecCCccC-------HHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTNAT-------IKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~-------~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+. |..+       .++|..+|.++.
T Consensus       177 ~~~~~G~-~v~~~~-G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          177 LVYKGGE-LISNFI-SVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETTE-EEEEET-TGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEECCE-EEEEEe-CCcccCcccCCHHHHHHHHHHcC
Confidence            9999886 333333 5544       489999998874

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.75  E-value=1e-18  Score=144.26  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=77.6

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCC--ChHHHHHHHHHHHHHHHCCCcE--EEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPDVQ--FLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~W--C~~Ck~~~p~l~~la~~~~~v~--~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .+..+++ ++|++.+.  .++.++|+||++|  |++|+.+.|.|++++++|+++.  |++||+|++++++++|+|.++||
T Consensus        18 ~~~~l~~-~~f~~~i~--~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT   94 (142)
T 2es7_A           18 GWQPVEA-STVDDWIK--RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPA   94 (142)
T ss_dssp             TCEECCC-C----------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSE
T ss_pred             cCccccc-ccHHHHHH--hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCe
Confidence            4566666 78998884  4556899999988  9999999999999999997788  99999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+ .+..+ .|..+.++|.++|++++..
T Consensus        95 ~~~fk~G~-~v~~~-~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           95 TLVFTDGK-LRGAL-SGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             EEEESCC-----CE-ESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEeCCE-EEEEE-eCCCCHHHHHHHHHHHhcc
Confidence            99999887 34334 4888999999999998743

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=6.3e-19  Score=141.19  Aligned_cols=110  Identities=17%  Similarity=0.327  Sum_probs=90.4

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccC
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLP  174 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~P  174 (290)
                      ...+.+++. ++|.+.+.. .++++||+||++||++|+.+.|.|+++++++.   ++.|+.||++++..++++|+|.++|
T Consensus         6 ~~~v~~l~~-~~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P   83 (133)
T 2dj3_A            6 SGPVKVVVG-KTFDAIVMD-PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFP   83 (133)
T ss_dssp             SCSSEECCT-TTCCCCCTC-TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSS
T ss_pred             CCceEEEcC-CCHHHHhcc-CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCC
Confidence            345666664 567766632 58999999999999999999999999999884   5999999999999999999999999


Q ss_pred             ceEEEeCCCc-eeeeecCCccCHHHHHHHHHhhCCC
Q 022923          175 FFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       175 T~~~~~~G~~-~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |+++|++|+. ....+..|..+.++|.++|++++..
T Consensus        84 t~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~  119 (133)
T 2dj3_A           84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATK  119 (133)
T ss_dssp             EEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSS
T ss_pred             EEEEEeCCCcccceEecCCCcCHHHHHHHHHHhccc
Confidence            9999988762 1223443558999999999999854

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.75  E-value=1.3e-18  Score=139.38  Aligned_cols=104  Identities=13%  Similarity=0.338  Sum_probs=84.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCCh--------------HHHHHHHHHHHHHHHCC-CcEEEEEeccccHhH
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCG--------------GCKALHPKICQLAEMNP-DVQFLQVNYEEHKSM  164 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~--------------~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l  164 (290)
                      .+.++++ ++|++.+. ..+++++|+||++||+              +|+.+.|.+++++++++ ++.|+.||+++++++
T Consensus         4 ~v~~l~~-~~f~~~~~-~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l   81 (123)
T 1oaz_A            4 KIIHLTD-DSFDTDVL-KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT   81 (123)
T ss_dssp             SCEECCS-TTHHHHTT-SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTT
T ss_pred             ccEecCh-hhHHHHHH-hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH
Confidence            4556644 67876664 4689999999999999              99999999999999986 599999999999999


Q ss_pred             HHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          165 CYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       165 ~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|+|.++||+++|++|+ .+..+ .|..+.++|.++|++++
T Consensus        82 ~~~~~v~~~Pt~~~~~~G~-~~~~~-~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           82 APKYGIRGIPTLLLFKNGE-VAATK-VGALSKGQLKEFLDANL  122 (123)
T ss_dssp             GGGGTCCBSSEEEEEESSS-EEEEE-ESCCCHHHHHHHHTTTC
T ss_pred             HHHcCCCccCEEEEEECCE-EEEEE-eCCCCHHHHHHHHHHHh
Confidence            9999999999999998887 33334 47889999999998875

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.75  E-value=3.2e-18  Score=134.83  Aligned_cols=97  Identities=9%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEe----ccccHhHHHhcCccccCceEEE
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVN----YEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd----~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      .+.++|.+.+  ..+++++|+||++||++|+.+.|.+++++++++ .+.++.+|    ++++.+++++|+|.++||+++|
T Consensus        17 ~~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~   94 (118)
T 1zma_A           17 TTVVRAQEAL--DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHI   94 (118)
T ss_dssp             CCHHHHHHHH--HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEE
T ss_pred             CCHHHHHHHH--hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEE
Confidence            3667888887  357899999999999999999999999998875 35555332    2334688999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHh
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      ++|+  +.....|..+.++|.++|++
T Consensus        95 ~~G~--~~~~~~G~~~~~~l~~~l~k  118 (118)
T 1zma_A           95 TDGQ--INVRCDSSMSAQEIKDFAGL  118 (118)
T ss_dssp             ETTE--EEEECCTTCCHHHHHHHHTC
T ss_pred             ECCE--EEEEecCCCCHHHHHHHhhC
Confidence            9886  44445588899999998853

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.8e-17  Score=152.54  Aligned_cols=126  Identities=21%  Similarity=0.346  Sum_probs=100.9

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc--ccHhHHHhcCccccC
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE--EHKSMCYSLNVHVLP  174 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d--~~~~l~~~~~I~~~P  174 (290)
                      ...+++++ .++|++.+. ..++++||+|||+||++|+.+.|.|+++++.+++ +.|+.||||  ++.++|++|+|.++|
T Consensus        16 ~~~vv~lt-~~~f~~~i~-~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~P   93 (298)
T 3ed3_A           16 DPHISELT-PKSFDKAIH-NTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFP   93 (298)
T ss_dssp             CTTCEECC-HHHHHHHHT-SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSS
T ss_pred             CCCeEEeC-HHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccc
Confidence            34566664 478999885 3588999999999999999999999999999975 899999998  689999999999999


Q ss_pred             ceEEEeCCCc----------------eeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCC-cHHHHHHHHhCC
Q 022923          175 FFRFYRGAHG----------------RVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAANK  231 (290)
Q Consensus       175 T~~~~~~G~~----------------~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~-~~~e~~~l~~~~  231 (290)
                      |+++|++|+.                ....|. |.++.+.|.+||.++++.     +...+ +.++++.+..+.
T Consensus        94 t~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~-G~r~~~~i~~fl~~~~~~-----~v~~i~~~~~l~~~l~~~  161 (298)
T 3ed3_A           94 TLMVFRPPKIDLSKPIDNAKKSFSAHANEVYS-GARTLAPIVDFSLSRIRS-----YVKKFVRIDTLGSLLRKS  161 (298)
T ss_dssp             EEEEEECCCC-------------CCCEEEECC-SCCSHHHHHHHHHTTCCC-----CEEECSCGGGHHHHHTSC
T ss_pred             eEEEEECCceeecccccccccccccccceeec-CCcCHHHHHHHHHHhccc-----ccEEcCCHHHHHHHHhcC
Confidence            9999999861                234454 889999999999999754     22233 445566666653

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.75  E-value=7.1e-18  Score=134.57  Aligned_cols=103  Identities=11%  Similarity=0.176  Sum_probs=89.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCC-------CChHHHHHHHHHHHHHHHCC-CcEEEEEec-------cccHhH
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSP-------GCGGCKALHPKICQLAEMNP-DVQFLQVNY-------EEHKSM  164 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~-------WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~-------d~~~~l  164 (290)
                      +.+.+.+.++|.+.+....+++++|+|||+       ||++|+.+.|.+++++++++ ++.|+.||+       +.+..+
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             eeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHH
Confidence            356678889999999765689999999999       99999999999999999995 799999999       788999


Q ss_pred             HHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          165 CYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       165 ~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      +++|+|.++||+++|++++ ++.++.  +.+.++|.++|++
T Consensus        85 ~~~~~i~~~Pt~~~~~~~~-~~~g~~--~~~~~~l~~~i~~  122 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGTPQ-KLVESE--CLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHCCCSSSEEEETTSSC-EEEGGG--GGCHHHHHHHHHC
T ss_pred             HHHCCCCeeCEEEEEcCCc-eEeccc--cCCHHHHHHHHhc
Confidence            9999999999999998865 555543  4678889998874

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.74  E-value=1.8e-17  Score=147.06  Aligned_cols=130  Identities=18%  Similarity=0.328  Sum_probs=98.9

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEec--cccHhHHHhcCcccc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNY--EEHKSMCYSLNVHVL  173 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~--d~~~~l~~~~~I~~~  173 (290)
                      .+.++++ ++|++.+.. .+++++|+|||+||++|+.+.|.|++++++++    ++.|+.|||  +++.++|++|+|+++
T Consensus        13 ~v~~l~~-~~f~~~i~~-~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           13 PLTLLQA-DTVRGAVLG-SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             SSEEECT-TTHHHHHSS-CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CceeCCh-hhHHHHHhh-CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            5666665 678887754 56999999999999999999999999999986    599999999  679999999999999


Q ss_pred             CceEEEeCCCce--eeeecCCccCHHHHHHHHHhhCCCCCCCCC-----CCCCcHHHHHHHHhCC
Q 022923          174 PFFRFYRGAHGR--VCSFSCTNATIKKFKDALAKHTPDRCGLGP-----TKGLEEKELLALAANK  231 (290)
Q Consensus       174 PT~~~~~~G~~~--v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p-----~~~~~~~e~~~l~~~~  231 (290)
                      ||+++|++|+..  ...+..++.+.+.|.++|.+++.......|     ....+.+++..+...+
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~  155 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARN  155 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTTCCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHC
T ss_pred             CEEEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcC
Confidence            999999986511  111233558999999999888743322111     2345567777665543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.74  E-value=8.3e-18  Score=151.12  Aligned_cols=107  Identities=21%  Similarity=0.321  Sum_probs=91.9

Q ss_pred             CCCeeEeCCHhHHHHHHHh-cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWH-AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~-~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .+.|.+|.+.++|.+.+.. ..+++|||+|||+||++|+.+.|.|.+++++|+++.|++||+++ ..++.+|+|.++||+
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~PTl  189 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVLPTL  189 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTCSEE
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCCCEE
Confidence            4578899899999999964 35899999999999999999999999999999999999999987 778999999999999


Q ss_pred             EEEeCCCceeeeecCCc-------cCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTN-------ATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~-------~~~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+. |.       .+.+.|..+|.++.
T Consensus       190 l~~~~G~-~v~~~v-G~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          190 LVYKGGE-LLSNFI-SVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             EEEETTE-EEEEET-TGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             EEEECCE-EEEEEe-CCcccccccccHHHHHHHHHHcC
Confidence            9999886 233222 22       46788999999885

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.74  E-value=1.3e-17  Score=144.91  Aligned_cols=105  Identities=17%  Similarity=0.364  Sum_probs=91.1

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+..+ +.++|...+  ..++++||+||++||++|+.+.|.|+++++++++ +.|+.||++++.+++++|+|.++||+++
T Consensus        98 ~v~~l-~~~~f~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  174 (210)
T 3apq_A           98 EIITL-ERREFDAAV--NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  174 (210)
T ss_dssp             TSEEC-CHHHHHHHH--HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceEEe-cHHHHHHHH--ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEE
Confidence            45555 457888888  4589999999999999999999999999999964 9999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |++|+ .+.. ..|..+.++|.++|+++++.
T Consensus       175 ~~~G~-~~~~-~~G~~~~~~l~~~i~~~l~~  203 (210)
T 3apq_A          175 FRSGM-AAVK-YNGDRSKESLVAFAMQHVRS  203 (210)
T ss_dssp             ECTTS-CCEE-CCSCCCHHHHHHHHHHHHHC
T ss_pred             EECCC-ceeE-ecCCCCHHHHHHHHHHhCcc
Confidence            98887 3333 44789999999999998743

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.74  E-value=1.4e-17  Score=161.19  Aligned_cols=127  Identities=21%  Similarity=0.376  Sum_probs=102.4

Q ss_pred             eeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          101 MREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      +.++++ ++|++.+... .+++++|+|||+||++|+.+.|.|+++++.+++ +.|+.|||+++.++|++|+|+++||+++
T Consensus         3 v~~l~~-~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~   81 (481)
T 3f8u_A            3 VLELTD-DNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKI   81 (481)
T ss_dssp             CEEECT-TTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEE
T ss_pred             eEEecH-HHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence            455544 6899888321 239999999999999999999999999999976 9999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCC-cHHHHHHHHhCCCCcc
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAANKDLSF  235 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~-~~~e~~~l~~~~~~~~  235 (290)
                      |++|+ .+..+. |.++.+.|.+||.++++.     +...+ +.++++.+..+.+..+
T Consensus        82 ~~~g~-~~~~~~-G~~~~~~l~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~v  132 (481)
T 3f8u_A           82 FRDGE-EAGAYD-GPRTADGIVSHLKKQAGP-----ASVPLRTEEEFKKFISDKDASI  132 (481)
T ss_dssp             EETTE-EEEECC-SCSSHHHHHHHHHHHTSC-----SEEEECSHHHHHHHTTSSSCEE
T ss_pred             EeCCc-eeeeec-CccCHHHHHHHHHhhccc-----CceecCCHHHHHHHHhcCCcEE
Confidence            99986 455554 889999999999999743     22233 5566666666655443

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.74  E-value=8e-18  Score=135.06  Aligned_cols=100  Identities=12%  Similarity=0.147  Sum_probs=82.8

Q ss_pred             CCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHHH--HHHHHC-CCcEEEEEec---cccHhHHHhcCc---ccc
Q 022923          105 ASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKIC--QLAEMN-PDVQFLQVNY---EEHKSMCYSLNV---HVL  173 (290)
Q Consensus       105 ~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l~--~la~~~-~~v~~~~Vd~---d~~~~l~~~~~I---~~~  173 (290)
                      .+.+++++.+..  ..++++||+||++||++|+.+.|.|.  ++.+.+ +++.|+.||+   +++.+++++|+|   .++
T Consensus        13 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~   92 (133)
T 3fk8_A           13 DAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI   92 (133)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCS
T ss_pred             ChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCcc
Confidence            344566665542  35899999999999999999999999  999888 5699999999   899999999999   999


Q ss_pred             CceEEE-eCCCceeeeecCC-------ccCHHHHHHHHHhh
Q 022923          174 PFFRFY-RGAHGRVCSFSCT-------NATIKKFKDALAKH  206 (290)
Q Consensus       174 PT~~~~-~~G~~~v~~~~~g-------~~~~~~l~~~L~k~  206 (290)
                      ||+++| ++|+  +.....|       ..+.+++.++|+++
T Consensus        93 Pt~~~~d~~G~--~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           93 PAVVVVNSDGK--VRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             SEEEEECTTSC--EEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCC--EEEEecCCcccccccCCHHHHHHHHHHh
Confidence            999999 6665  4444335       46889999998875

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.73  E-value=1.1e-17  Score=146.49  Aligned_cols=105  Identities=17%  Similarity=0.382  Sum_probs=91.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC----CCcEEEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ......+.++|.+.+.  .+++++|+||++||++|+.+.|.+.++++.+    +++.|+.||++++.+++++|+|.++||
T Consensus       130 ~~~~~~~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  207 (241)
T 3idv_A          130 EVTLVLTKENFDEVVN--DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPT  207 (241)
T ss_dssp             CSSEECCTTTHHHHHH--HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             ccceeccHHHHHHhhc--cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCE
Confidence            4455566688998884  4689999999999999999999999999876    349999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+  ...+. |..+.++|.++|.++++.
T Consensus       208 ~~~~~~g~--~~~~~-g~~~~~~l~~~l~~~~~~  238 (241)
T 3idv_A          208 LKIFRKGR--PYDYN-GPREKYGIVDYMIEQSGA  238 (241)
T ss_dssp             EEEEETTE--EEECC-SCCSHHHHHHHHHHHTTC
T ss_pred             EEEEECCe--EEEec-CCCCHHHHHHHHHhhhCC
Confidence            99999986  44454 889999999999999754

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.72  E-value=4.1e-17  Score=159.17  Aligned_cols=106  Identities=20%  Similarity=0.466  Sum_probs=93.1

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      .+.+++ .++|++.+  ..+++++|+|||+||++|+.+.|.|+++++.+.  ++.|+.|||+++.++|++|+|+++||++
T Consensus        15 ~v~~l~-~~~f~~~~--~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   91 (504)
T 2b5e_A           15 AVVKLA-TDSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK   91 (504)
T ss_dssp             SCEECC-TTTHHHHH--TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcEECC-HHHHHHHH--hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            566664 47899987  468999999999999999999999999999996  4999999999999999999999999999


Q ss_pred             EEeCCCce-eeeecCCccCHHHHHHHHHhhCCC
Q 022923          178 FYRGAHGR-VCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       178 ~~~~G~~~-v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|++|+.. +..+. |.++.+.|.++|.++++.
T Consensus        92 ~~~~g~~~~~~~~~-G~~~~~~l~~~l~~~~~~  123 (504)
T 2b5e_A           92 IFKNSDVNNSIDYE-GPRTAEAIVQFMIKQSQP  123 (504)
T ss_dssp             EEETTCTTCEEECC-SCCSHHHHHHHHHHHTSC
T ss_pred             EEeCCccccceeec-CCCCHHHHHHHHHHhcCC
Confidence            99998721 45554 889999999999999854

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.72  E-value=5.1e-18  Score=133.48  Aligned_cols=104  Identities=21%  Similarity=0.405  Sum_probs=85.3

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC------CcEEEEEeccccHhHHHhcCccc
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP------DVQFLQVNYEEHKSMCYSLNVHV  172 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~------~v~~~~Vd~d~~~~l~~~~~I~~  172 (290)
                      ..+.+++. ++|.+.+. ..+++++|+||++||++|+.+.|.|++++++++      ++.|+.||+++++ +++  +|.+
T Consensus         7 ~~v~~l~~-~~f~~~v~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            7 GPVTVVVA-KNYNEIVL-DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSSEECCT-TTTTTSSS-CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCeEEecc-cCHHHHhh-cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            35666654 67777653 368999999999999999999999999999885      5999999999876 565  9999


Q ss_pred             cCceEEEeCCCce-eeeecCCccCHHHHHHHHHhhCC
Q 022923          173 LPFFRFYRGAHGR-VCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       173 ~PT~~~~~~G~~~-v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +||+++|++|+.. +..+. |..+.++|.++|++++.
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYS-GSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCC-CCSCHHHHHHHHHHTSS
T ss_pred             CCeEEEEeCcCCCCceEec-CCCCHHHHHHHHHhccC
Confidence            9999999888522 33443 78899999999999874

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=156.66  Aligned_cols=106  Identities=16%  Similarity=0.356  Sum_probs=88.6

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-------CcEEEEEeccccHhHHHhcCccc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-------DVQFLQVNYEEHKSMCYSLNVHV  172 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-------~v~~~~Vd~d~~~~l~~~~~I~~  172 (290)
                      .+.+++. ++|++.+.  .++++||+|||+||++|+.+.|.|+++++.+.       ++.|+.|||+++.++|++|+|++
T Consensus         6 ~v~~l~~-~~f~~~~~--~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~   82 (382)
T 2r2j_A            6 EITSLDT-ENIDEILN--NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISK   82 (382)
T ss_dssp             --CBCCT-TTHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCE
T ss_pred             ceEECCH-HHHHHHHh--cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCc
Confidence            4555544 68888773  57899999999999999999999999998862       39999999999999999999999


Q ss_pred             cCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +||+++|++|+ .+.....|.++.+.|.+||.++++.
T Consensus        83 ~Pt~~~f~~G~-~~~~~~~G~~~~~~l~~~i~~~~~~  118 (382)
T 2r2j_A           83 YPTLKLFRNGM-MMKREYRGQRSVKALADYIRQQKSD  118 (382)
T ss_dssp             ESEEEEEETTE-EEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred             CCEEEEEeCCc-EeeeeecCcchHHHHHHHHHHhccC
Confidence            99999999986 3332234889999999999998754

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.71  E-value=3.1e-17  Score=153.17  Aligned_cols=123  Identities=11%  Similarity=0.197  Sum_probs=100.4

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHH-------HHHHHHHCC--CcEEEEEeccccHhHHHhcCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-------ICQLAEMNP--DVQFLQVNYEEHKSMCYSLNV  170 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~-------l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I  170 (290)
                      .+.++ +.++|++.+  ..+++++|+|||+||+ |+.+.|.       |+++++.+.  ++.|++|||+++.++|++|+|
T Consensus        12 ~v~~l-~~~~f~~~i--~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v   87 (350)
T 1sji_A           12 RVVSL-TEKNFKQVL--KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGF   87 (350)
T ss_dssp             CCEEE-CHHHHHHHH--TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTC
T ss_pred             ccEEC-CHHHHHHHH--hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCC
Confidence            45555 457899888  4579999999999999 9988888       899998875  599999999999999999999


Q ss_pred             cccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCC-cHHHHHHHHh-CCCCc
Q 022923          171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAA-NKDLS  234 (290)
Q Consensus       171 ~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~-~~~e~~~l~~-~~~~~  234 (290)
                      +++||+++|++|+  +..+. |.++.+.|.++|.++++.     +...+ +.++++.+.. +.+..
T Consensus        88 ~~~Pt~~~~~~g~--~~~~~-G~~~~~~l~~~i~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~  145 (350)
T 1sji_A           88 DEEGSLYVLKGDR--TIEFD-GEFAADVLVEFLLDLIED-----PVEIINSKLEVQAFERIEDQIK  145 (350)
T ss_dssp             CSTTEEEEEETTE--EEEEC-SCCCHHHHHHHHHTTSSC-----SEEECCSHHHHHHHHHCCSSCE
T ss_pred             CccceEEEEECCc--EEEec-CCCCHHHHHHHHHHhcCC-----cceeccchHHHHHHhccCCCcE
Confidence            9999999999986  55665 889999999999999753     23344 4567777766 44443

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.71  E-value=3.5e-17  Score=154.34  Aligned_cols=124  Identities=13%  Similarity=0.171  Sum_probs=98.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCC--CcEEEEEeccccHhHHHhcCcc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALH------PKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVH  171 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~------p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~  171 (290)
                      .+.+++. ++|++.+.  .+++++|+|||+||++|+...      |.++++++.+.  ++.|++|||++++++|++|+|+
T Consensus        14 ~v~~lt~-~~f~~~i~--~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~   90 (367)
T 3us3_A           14 RVINVNA-KNYKNVFK--KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT   90 (367)
T ss_dssp             CCEECCT-TTHHHHHH--HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCC
T ss_pred             ccEECCH-HHHHHHHh--hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCC
Confidence            4555544 68999883  579999999999999974433      68889988764  4999999999999999999999


Q ss_pred             ccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCC-cHHHHHHHHh-CCCCc
Q 022923          172 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAA-NKDLS  234 (290)
Q Consensus       172 ~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~-~~~e~~~l~~-~~~~~  234 (290)
                      ++||+++|++|+  ...|. |.++.+.|.+||.++++.     +...+ +.++++.+.. +.++.
T Consensus        91 ~~PTl~~f~~G~--~~~y~-G~~~~~~i~~~i~~~~~~-----~v~~i~~~~~~~~~~~~~~~~~  147 (367)
T 3us3_A           91 EEDSIYVFKEDE--VIEYD-GEFSADTLVEFLLDVLED-----PVELIEGERELQAFENIEDEIK  147 (367)
T ss_dssp             STTEEEEEETTE--EEECC-SCCSHHHHHHHHHHHHSC-----SEEECCSHHHHHHHHHCCSSCE
T ss_pred             cCceEEEEECCc--EEEeC-CCCCHHHHHHHHHHhcCC-----CcEEcCCHHHHHHHhccCCCcE
Confidence            999999999886  45565 889999999999998743     23344 4567777766 44433

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.69  E-value=8.3e-17  Score=140.19  Aligned_cols=98  Identities=17%  Similarity=0.096  Sum_probs=82.4

Q ss_pred             CHhHHHHHHHhcCCCeE-EEEEeCCCChHHHHHHHHHHHHHHHCC-----CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          106 SAQDLVESLWHAGDKLV-VVDFFSPGCGGCKALHPKICQLAEMNP-----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~v-lV~FyA~WC~~Ck~~~p~l~~la~~~~-----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.+.+....  ..++++ +|+||++||++|+.+.|.++++++.++     ++.|+.||++++.+++++|+|.++||+++|
T Consensus       122 ~~~~~~~~~--~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  199 (226)
T 1a8l_A          122 MDETKQAIR--NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ  199 (226)
T ss_dssp             CHHHHHHHT--TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CHHHHHHHH--hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEE
Confidence            345555543  344556 999999999999999999999999886     799999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+ .|..+.++|.++|++++
T Consensus       200 ~~G~-~~~~~-~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          200 VNGE-DRVEF-EGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             ETTE-EEEEE-ESCCCHHHHHHHHHHHH
T ss_pred             eCCc-eeEEE-cCCCCHHHHHHHHHHhh
Confidence            9887 33334 48899999999998764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.50  E-value=2.7e-18  Score=130.73  Aligned_cols=96  Identities=24%  Similarity=0.499  Sum_probs=82.3

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCcee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV  186 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v  186 (290)
                      ++|.+.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||+++|++|+  +
T Consensus         9 ~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~--~   85 (106)
T 2yj7_A            9 ENFEQEVL-KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQ--V   85 (106)
Confidence            56665553 468899999999999999999999999999987 6999999999999999999999999999998876  3


Q ss_pred             eeecCCccCHHHHHHHHHhh
Q 022923          187 CSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L~k~  206 (290)
                      .....|..+.+++.++|+++
T Consensus        86 ~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           86 VDRLVGAQPKEALKERIDKH  105 (106)
Confidence            33334778889999988765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.68  E-value=2.4e-16  Score=155.51  Aligned_cols=129  Identities=15%  Similarity=0.291  Sum_probs=99.1

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----cEEEEEecc--ccHhHHHhcCcccc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYE--EHKSMCYSLNVHVL  173 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d--~~~~l~~~~~I~~~  173 (290)
                      .+.+++. ++|++.+.. .+++++|+|||+||++|+.+.|.|+++++++++    +.|+.||++  ++.++|++|+|.++
T Consensus        13 ~V~~Lt~-~~f~~~v~~-~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           13 PLTLLDA-DSVRPTVLG-SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             SSEEECT-TTHHHHHSS-CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CcEECCh-HHHHHHHHh-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            4666655 678887753 579999999999999999999999999998864    999999995  58999999999999


Q ss_pred             CceEEEeCCC--ceeeeecCCccCHHHHHHHHHhhCCCCCCCCC-----CCCCcHHHHHHHHhC
Q 022923          174 PFFRFYRGAH--GRVCSFSCTNATIKKFKDALAKHTPDRCGLGP-----TKGLEEKELLALAAN  230 (290)
Q Consensus       174 PT~~~~~~G~--~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p-----~~~~~~~e~~~l~~~  230 (290)
                      ||+++|++|+  +.......|+.+.++|.++|.+++.......|     ...++.+++..+...
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~  154 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTR  154 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGS
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhcc
Confidence            9999998643  22344455789999999999988754332111     234455666555444

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.67  E-value=8.4e-17  Score=118.54  Aligned_cols=82  Identities=21%  Similarity=0.282  Sum_probs=73.3

Q ss_pred             CeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHH
Q 022923          120 KLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK  198 (290)
Q Consensus       120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~  198 (290)
                      .+++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||+++  +|+  + . ..|..+.++
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~--~-~-~~G~~~~~~   76 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGD--V-E-FIGAPTKEA   76 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTE--E-E-CCSSSSSHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCE--E-e-eecCCCHHH
Confidence            578999999999999999999999999997 69999999999999999999999999998  765  4 3 337779999


Q ss_pred             HHHHHHhhC
Q 022923          199 FKDALAKHT  207 (290)
Q Consensus       199 l~~~L~k~~  207 (290)
                      |.++|++++
T Consensus        77 l~~~l~~~l   85 (85)
T 1fo5_A           77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998763

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1e-16  Score=127.74  Aligned_cols=100  Identities=22%  Similarity=0.299  Sum_probs=80.6

Q ss_pred             hHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHC-CCcEEEEEecc--ccHhHHHhcCccccCceEEE
Q 022923          108 QDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMN-PDVQFLQVNYE--EHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       108 ~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~-~~v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~  179 (290)
                      ++|.+.+..  ..++++||+||++||++|+.+.|.+   ..+.+.+ .++.++.||++  .+..++++|+|.++||+++|
T Consensus        14 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   93 (130)
T 2kuc_A           14 LSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFI   93 (130)
T ss_dssp             CCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEE
Confidence            345555531  2578999999999999999999999   6776655 35899999998  57899999999999999999


Q ss_pred             -eCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          180 -RGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       180 -~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                       ++|+  +.....|..+.++|.++|++++..
T Consensus        94 d~~G~--~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           94 NSSGE--VVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             CTTSC--EEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             CCCCc--EEEEecCCCCHHHHHHHHHHHHHh
Confidence             4665  443344788999999999998754

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.66  E-value=1.1e-16  Score=117.92  Aligned_cols=81  Identities=11%  Similarity=0.195  Sum_probs=72.6

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923          121 LVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      ..+|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||+++  +|+  + .+. |..+.++|
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~--~-~~~-G~~~~~~l   76 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV--V-RFV-GAPSREEL   76 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT--E-EEE-CSSCCHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCE--E-EEc-cCCCHHHH
Confidence            46899999999999999999999999987 69999999999999999999999999998  776  3 333 77789999


Q ss_pred             HHHHHhhC
Q 022923          200 KDALAKHT  207 (290)
Q Consensus       200 ~~~L~k~~  207 (290)
                      .++|++++
T Consensus        77 ~~~l~~~l   84 (85)
T 1nho_A           77 FEAINDEM   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998875

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.66  E-value=2.6e-16  Score=133.38  Aligned_cols=98  Identities=8%  Similarity=0.061  Sum_probs=76.9

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcC---ccccCceEEEeC
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN---VHVLPFFRFYRG  181 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~---I~~~PT~~~~~~  181 (290)
                      ...+++...+...++++++|+|||+||++|+.+.|.++++++.++++.|+.||+|++++++++|.   |.++||+++|++
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~  119 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE  119 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECC
Confidence            33355556565446889999999999999999999999999999999999999999999999997   999999999988


Q ss_pred             CCceeeeecCCccCHHHHHHHHHh
Q 022923          182 AHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       182 G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      |+ ++.... |+.. ..+.+.+++
T Consensus       120 ~G-~~~~~~-g~~p-~~~~~~i~~  140 (167)
T 1z6n_A          120 EF-NLLGRF-VERP-QAVLDGGPQ  140 (167)
T ss_dssp             TC-CEEEEE-ESSC-HHHHHHCHH
T ss_pred             CC-CEEEEE-cCCC-HHHHHhHHH
Confidence            64 244433 3333 344444444

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.65  E-value=5.2e-16  Score=150.23  Aligned_cols=103  Identities=20%  Similarity=0.375  Sum_probs=88.9

Q ss_pred             eCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       104 I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      +.+.++|++.+. +.+++|+|+|||+||++|+.+.|.|+++++.++   ++.|+.||++.+ +++++|+|.++||+++|+
T Consensus       356 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~  433 (481)
T 3f8u_A          356 VVVAENFDEIVN-NENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSP  433 (481)
T ss_dssp             EECTTTHHHHHT-CTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEEC
T ss_pred             EecccCHHHHhh-cCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEe
Confidence            345568888774 358999999999999999999999999999985   499999999988 899999999999999998


Q ss_pred             CCCce-eeeecCCccCHHHHHHHHHhhCCC
Q 022923          181 GAHGR-VCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       181 ~G~~~-v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|+.. +..+. |.++.++|.++|++++..
T Consensus       434 ~~~~~~~~~~~-G~~~~~~l~~~l~~~~~~  462 (481)
T 3f8u_A          434 ANKKLNPKKYE-GGRELSDFISYLQREATN  462 (481)
T ss_dssp             TTCTTSCEECC-SCCSHHHHHHHHHHHCSS
T ss_pred             CCCeEeeeEeC-CCCCHHHHHHHHHHhcCC
Confidence            88732 44454 889999999999999854

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.65  E-value=1.6e-15  Score=136.50  Aligned_cols=101  Identities=15%  Similarity=0.250  Sum_probs=86.1

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEe--CCCChHHHHHHHHHHHHHHHC----CCcEEEEEeccc-----cHhHHHhc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFF--SPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEE-----HKSMCYSL  168 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~Fy--A~WC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~-----~~~l~~~~  168 (290)
                      .++.++ .++|++.+  ..+++|||+||  ||||+    +.|.|+++++.+    +++.|++|||++     ++++|++|
T Consensus        17 ~v~~Lt-~~nF~~vi--~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           17 GCVDLD-ELSFEKTV--ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             TCEECC-TTTHHHHH--TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             CcEECC-HHHHHHHH--hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            455554 47899866  46889999999  99999    999999999987    469999999998     89999999


Q ss_pred             Ccc--ccCceEEEeCCC-ceeeeec-CCccCHHHHHHHHHhhCC
Q 022923          169 NVH--VLPFFRFYRGAH-GRVCSFS-CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       169 ~I~--~~PT~~~~~~G~-~~v~~~~-~g~~~~~~l~~~L~k~~~  208 (290)
                      +|+  ++|||++|+ |+ ..+..|. .|.++.++|.+||+++++
T Consensus        90 ~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           90 KVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            999  999999999 76 2345551 388999999999999976

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.64  E-value=5.2e-16  Score=144.75  Aligned_cols=105  Identities=23%  Similarity=0.484  Sum_probs=87.9

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC---cEEEEEeccccHhHHHhcCccccCce
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~---v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .+..++ .++|.+.+. ..+++++|+|||+||++|+.+.|.|+++++.+++   +.|+.||++.+.  +++|+|.++||+
T Consensus       250 ~v~~l~-~~~f~~~~~-~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~  325 (361)
T 3uem_A          250 PVKVLV-GKNFEDVAF-DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTL  325 (361)
T ss_dssp             SSEEEC-TTTHHHHHT-CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEE
T ss_pred             CcEEee-cCchhhhcc-cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeE
Confidence            355554 467888774 3689999999999999999999999999999864   999999999887  789999999999


Q ss_pred             EEEeCCCc-eeeeecCCccCHHHHHHHHHhhCCC
Q 022923          177 RFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       177 ~~~~~G~~-~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ++|++|++ .+..+. |.++.++|.+||+++...
T Consensus       326 ~~~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~~  358 (361)
T 3uem_A          326 KFFPASADRTVIDYN-GERTLDGFKKFLESGGQD  358 (361)
T ss_dssp             EEECSSSSCCCEECC-SCSSHHHHHHHHTTTSCS
T ss_pred             EEEECCCCcceeEec-CCCCHHHHHHHHHhcCCC
Confidence            99976633 345555 889999999999988643

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.64  E-value=2.4e-16  Score=132.09  Aligned_cols=98  Identities=15%  Similarity=0.296  Sum_probs=74.9

Q ss_pred             hHHHHHHH--hcCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEEeccccHhH-----------------
Q 022923          108 QDLVESLW--HAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEEHKSM-----------------  164 (290)
Q Consensus       108 ~~f~~~l~--~~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~d~~~~l-----------------  164 (290)
                      .+|.+.+.  ..++|+|||+|||+||++|+.+.+.+   .++.+.+. ++.|+.||++++.++                 
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~  113 (172)
T 3f9u_A           34 DDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRT  113 (172)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEE
T ss_pred             hhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhh
Confidence            45555553  24689999999999999999985444   45554443 699999999876655                 


Q ss_pred             ---------HHhcCccccCceEEE-eCCCceeeeecCCccC-HHHHHHHHHhhC
Q 022923          165 ---------CYSLNVHVLPFFRFY-RGAHGRVCSFSCTNAT-IKKFKDALAKHT  207 (290)
Q Consensus       165 ---------~~~~~I~~~PT~~~~-~~G~~~v~~~~~g~~~-~~~l~~~L~k~~  207 (290)
                               +++|+|.++||++|| ++|+  +.....|..+ .++|.++|++.+
T Consensus       114 ~~~~~~~~~~~~~~v~~~Pt~~lid~~G~--~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          114 VGDKWSYLQRVKFGANAQPFYVLIDNEGN--PLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             HHHHHHHHHHHHHSCCCSSEEEEECTTSC--BSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHcCCCCcceEEEECCCCC--EEeeccCCCCCHHHHHHHHHHHH
Confidence                     789999999999999 5665  4444447777 999999998764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.63  E-value=4.4e-16  Score=135.54  Aligned_cols=122  Identities=12%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             eCCHhHHHHHH-HhcCCCeEEEEEeCC-CChHHHHHHHHHHHHHHHCCCcEEEEEeccc--cHhHHHhcCccccCceEEE
Q 022923          104 VASAQDLVESL-WHAGDKLVVVDFFSP-GCGGCKALHPKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       104 I~s~~~f~~~l-~~~~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~~  179 (290)
                      ..+.+++.+.+ ....+..++|+||++ ||++|+.+.|.++++++..+++.|+.||+++  +++++++|+|.++||+++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (226)
T 1a8l_A            6 DADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT   85 (226)
T ss_dssp             HHHHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEE
Confidence            34556777777 444567778999999 9999999999999999887889999999999  9999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHh
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA  229 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~  229 (290)
                      ++|+.....+. |..+.+++.+++..++...   ++...++.+.++.+..
T Consensus        86 ~~g~~~~~~~~-G~~~~~~l~~~l~~~l~~~---~~~~~l~~~~~~~~~~  131 (226)
T 1a8l_A           86 QDGKDFGVRYF-GLPAGHEFAAFLEDIVDVS---REETNLMDETKQAIRN  131 (226)
T ss_dssp             ETTBCCSEEEE-SCCCTTHHHHHHHHHHHHH---HTCCCCCHHHHHHHTT
T ss_pred             cCCceeeEEEe-ccCcHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHh
Confidence            99863224454 6677778888887764210   1223445555555543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.63  E-value=1e-15  Score=156.73  Aligned_cols=105  Identities=15%  Similarity=0.313  Sum_probs=84.9

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .+.. .+.++|++.+  ..+++++|+|||+||++|+.+.|.|+++++.+.+ +.|++|||+++.++|++|+|.++||+++
T Consensus       117 ~v~~-l~~~~f~~~i--~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  193 (780)
T 3apo_A          117 EIIT-LERREFDAAV--NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  193 (780)
T ss_dssp             TEEE-CCHHHHHHHH--TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEE
T ss_pred             ceee-echHhHHhhh--cCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEE
Confidence            4544 4557899998  5789999999999999999999999999999865 9999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |++|+ .+..+. |.++.+.|.++|.++++.
T Consensus       194 ~~~g~-~~~~~~-G~~~~~~l~~~l~~~~~~  222 (780)
T 3apo_A          194 FRSGM-AAVKYN-GDRSKESLVAFAMQHVRS  222 (780)
T ss_dssp             ECTTS-CCEECC-SCSCHHHHHHHHHTTSCC
T ss_pred             EeCCc-EeeEec-CCCCHHHHHHHHHHhchh
Confidence            99997 345554 889999999999999854

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.62  E-value=5.3e-17  Score=157.91  Aligned_cols=84  Identities=17%  Similarity=0.320  Sum_probs=73.7

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---------CcEEEEEeccccHhHHHhcC
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEHKSMCYSLN  169 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---------~v~~~~Vd~d~~~~l~~~~~  169 (290)
                      ..+++++. ++|++.+....+++|||+|||+||++|+.+.|.|++++++|.         ++.|+.||++++.+++++|+
T Consensus        23 ~~V~~Lt~-~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           23 SSVVDLSG-DDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             TTEEECSC-SCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCcEECCH-HHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            35666655 678887754456899999999999999999999999999986         39999999999999999999


Q ss_pred             ccccCceEEEeCCC
Q 022923          170 VHVLPFFRFYRGAH  183 (290)
Q Consensus       170 I~~~PT~~~~~~G~  183 (290)
                      |.++||+++|++|+
T Consensus       102 V~~~PTlilf~~gg  115 (470)
T 3qcp_A          102 INFVPRLFFFYPRD  115 (470)
T ss_dssp             CCSSCEEEEEEESS
T ss_pred             CCccCeEEEEECCC
Confidence            99999999997665

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.61  E-value=3.3e-15  Score=133.36  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=80.3

Q ss_pred             HHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-----CCcEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923          110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-----PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  184 (290)
Q Consensus       110 f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-----~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~  184 (290)
                      ..+.+....++.++++|||+||++|+.+.|.|++++..+     +++.+..||++++++++++|+|.++||+++  +|+ 
T Consensus       129 ~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~-  205 (243)
T 2hls_A          129 TKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGY-  205 (243)
T ss_dssp             HHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTE-
T ss_pred             HHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCE-
Confidence            334443335778899999999999999999999999988     679999999999999999999999999988  665 


Q ss_pred             eeeeecCCccCHHHHHHHHHhhCCC
Q 022923          185 RVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       185 ~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                       +. +. |.++.++|.++|+++++.
T Consensus       206 -~~-~~-G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          206 -LV-FV-GVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             -EE-EE-SCCCHHHHHHHHHHHHTT
T ss_pred             -EE-Ee-CCCCHHHHHHHHHHHhhc
Confidence             33 44 889999999999998754

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.41  E-value=4.2e-17  Score=130.12  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=77.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCCC-cEEEEEecc--ccHhHHHhcCccccCceEEE--eCCCcee--
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPD-VQFLQVNYE--EHKSMCYSLNVHVLPFFRFY--RGAHGRV--  186 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~~-v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~--~~G~~~v--  186 (290)
                      ..++++||+||++||++|+.+.|.+   .++.+.+++ +.++.||++  ++.+++++|+|.++||+++|  ++|+  +  
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~--~~~   94 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGA--WEE   94 (130)
Confidence            4688999999999999999999999   899888765 999999994  67889999999999999999  4565  4  


Q ss_pred             eeecCCccCHHHHHHHHHhhCCC
Q 022923          187 CSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      .....|..+.++|.++|++++..
T Consensus        95 ~~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           95 VGRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            33444778899999999988743

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.61  E-value=1.3e-15  Score=126.29  Aligned_cols=88  Identities=11%  Similarity=0.169  Sum_probs=74.3

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHH---HHHHHHC-CCcEEEEEecccc-----------HhHHHhcCccccCceEEE-e
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKI---CQLAEMN-PDVQFLQVNYEEH-----------KSMCYSLNVHVLPFFRFY-R  180 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l---~~la~~~-~~v~~~~Vd~d~~-----------~~l~~~~~I~~~PT~~~~-~  180 (290)
                      .+++++|+|| ++||++|+.+.|.+   .++.+.+ .++.++.||+++.           .+++++|+|.++||+++| +
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~  125 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDA  125 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEECT
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEcC
Confidence            5899999999 99999999999999   7776665 5699999999765           489999999999999999 5


Q ss_pred             CCCceeeeecCCcc--CHHHHHHHHHhhCC
Q 022923          181 GAHGRVCSFSCTNA--TIKKFKDALAKHTP  208 (290)
Q Consensus       181 ~G~~~v~~~~~g~~--~~~~l~~~L~k~~~  208 (290)
                      +|+  +.... |..  +.++|.++|++.+.
T Consensus       126 ~G~--~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          126 EGK--QLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             TCC--EEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             CCC--EEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            665  44445 777  89999999988753

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.61  E-value=5.3e-15  Score=117.44  Aligned_cols=87  Identities=28%  Similarity=0.426  Sum_probs=76.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc----------------------cHhHHHhcCccccCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----------------------HKSMCYSLNVHVLPF  175 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----------------------~~~l~~~~~I~~~PT  175 (290)
                      .+++++|+||++||++|+.+.|.+.++.++++++.|+.|+++.                      +..++++|+|.++|+
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  102 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCE
Confidence            5789999999999999999999999999999999999999977                      678999999999999


Q ss_pred             eEEEe-CCCceeeeecC---CccCHHHHHHHHHhhC
Q 022923          176 FRFYR-GAHGRVCSFSC---TNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~-~G~~~v~~~~~---g~~~~~~l~~~L~k~~  207 (290)
                      +++++ +|+  +. ...   |..+.++|.++|++++
T Consensus       103 ~~lid~~G~--i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          103 FVFYRADGT--ST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             EEEECTTSC--EE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             EEEECCCCc--EE-EEEcCCCccCHHHHHHHHHHHh
Confidence            99994 554  55 555   7789999999998864

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.61  E-value=3.2e-15  Score=130.66  Aligned_cols=96  Identities=15%  Similarity=0.147  Sum_probs=81.2

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCce
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR  185 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~  185 (290)
                      +.++|+..+ ...+..++|+||++||++|+.+.|.+++++++++++.|+.||++++++++++|+|.++||+++  +|+  
T Consensus       124 ~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~--  198 (229)
T 2ywm_A          124 SEKTLELLQ-VVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG--  198 (229)
T ss_dssp             CHHHHHHHT-TCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG--
T ss_pred             CHHHHHHHH-hcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE--
Confidence            446676655 223444488999999999999999999999999999999999999999999999999999988  665  


Q ss_pred             eeeecCCccCHHHHHHHHHhhC
Q 022923          186 VCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       186 v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +..+. |..+.++|.++|++++
T Consensus       199 ~~~~~-G~~~~~~l~~~l~~~~  219 (229)
T 2ywm_A          199 VAEFV-GAQPENAFLGYIMAVY  219 (229)
T ss_dssp             TEEEE-SCCCHHHHHHHHHHHH
T ss_pred             EEEee-CCCCHHHHHHHHHHHh
Confidence            44444 8899999999998875

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.60  E-value=7.7e-16  Score=123.17  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHH---CCCcEEEEEecccc--HhHHHhcCccccCceEEEeCCCceeeeecCC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEH--KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT  192 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~---~~~v~~~~Vd~d~~--~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g  192 (290)
                      +.+.+||+|||+||++|+.+.+.+....+.   ...+.+++||++++  .+++.+|+|.++|||+||++|+ .+.. ..|
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~-ev~R-i~G   94 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDV-ESGR-LEG   94 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTE-EEEE-EEC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCE-EEee-ecC
Confidence            467899999999999999999755433221   11378999999875  5789999999999999999887 4444 448


Q ss_pred             ccCHHHHHHHHHhhC
Q 022923          193 NATIKKFKDALAKHT  207 (290)
Q Consensus       193 ~~~~~~l~~~L~k~~  207 (290)
                      ....+.|..+|++.+
T Consensus        95 ~~~~~~f~~~L~~~l  109 (116)
T 3dml_A           95 YPGEDFFWPMLARLI  109 (116)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999998875

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.60  E-value=2.5e-15  Score=121.62  Aligned_cols=105  Identities=16%  Similarity=0.227  Sum_probs=86.5

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccc--cCc
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHV--LPF  175 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~--~PT  175 (290)
                      |.+.+++ .++|.+.+  ..+.+|+|+|||+ |++|+.+.|.+++++++|. ++.|++||+|+++.++++|+|++  +||
T Consensus         6 plv~~~t-~~~f~~~~--~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPt   81 (133)
T 2djk_A            6 PLIGEIG-PETYSDYM--SAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPA   81 (133)
T ss_dssp             CCSEECC-HHHHHHHH--HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSE
T ss_pred             CceeccC-hHHHHHHh--cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCE
Confidence            3455554 46788775  4678999999999 8999999999999999996 59999999999999999999999  999


Q ss_pred             eEEEeCCCceeeeecC-CccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSC-TNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~-g~~~~~~l~~~L~k~~  207 (290)
                      +++|++++++...... |..+.++|.+||++++
T Consensus        82 l~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           82 FAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             EEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred             EEEEecCcCcccCCCCccccCHHHHHHHHHHHH
Confidence            9999872222332211 7789999999999886

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.59  E-value=3.2e-15  Score=145.79  Aligned_cols=105  Identities=19%  Similarity=0.325  Sum_probs=86.7

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .+..++. ++|++.+. ..++++||+|||+||++|+.+.|.|+++++.++    ++.+++||++.+... . |+|.++||
T Consensus       359 ~v~~l~~-~~f~~~v~-~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt  434 (504)
T 2b5e_A          359 SVFQLVG-KNHDEIVN-DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPT  434 (504)
T ss_dssp             SEEEECT-TTHHHHHH-CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSE
T ss_pred             cceeccc-ccHHHhhc-cCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCe
Confidence            3555544 67888775 368999999999999999999999999999875    699999999987644 4 99999999


Q ss_pred             eEEEeCCCc-eeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~-~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+. .+..+. |.++.++|.++|++++..
T Consensus       435 ~~~~~~G~~~~~~~~~-G~~~~~~l~~~i~~~~~~  468 (504)
T 2b5e_A          435 IVLYPGGKKSESVVYQ-GSRSLDSLFDFIKENGHF  468 (504)
T ss_dssp             EEEECCTTSCCCCBCC-SCCCHHHHHHHHHHHCTT
T ss_pred             EEEEeCCceecceEec-CCCCHHHHHHHHHhcCCC
Confidence            999998862 144444 789999999999999754

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.59  E-value=6.4e-15  Score=131.90  Aligned_cols=100  Identities=14%  Similarity=0.231  Sum_probs=85.2

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeC--CCChHHHHHHHHHHHHHHHC---CCcEEEEEecc-----ccHhHHHhcC
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFS--PGCGGCKALHPKICQLAEMN---PDVQFLQVNYE-----EHKSMCYSLN  169 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA--~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d-----~~~~l~~~~~  169 (290)
                      .++++++ ++|++.+  ..+++|||+|||  |||+    +.|.|+++++.+   +++.|++||++     +++++|++|+
T Consensus         6 ~v~~Lt~-~nF~~~i--~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~   78 (240)
T 2qc7_A            6 GALPLDT-VTFYKVI--PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK   78 (240)
T ss_dssp             TCEECCT-THHHHHG--GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT
T ss_pred             CceECCH-HHHHHHH--cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC
Confidence            4555554 7899876  457899999999  9999    999999999987   46999999954     5899999999


Q ss_pred             cc--ccCceEEEeCCC-ceeeeecCCccCHHHHHHHHHhhC
Q 022923          170 VH--VLPFFRFYRGAH-GRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       170 I~--~~PT~~~~~~G~-~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |+  ++|||++|++|+ ..+..|. |.++.+.|.+||+++.
T Consensus        79 V~~~~~PTl~~f~~G~~~~~~~y~-G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           79 LDKESYPVFYLFRDGDFENPVPYT-GAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CCGGGCSEEEEEETTCSSCCEECC-SCSCHHHHHHHHHHTT
T ss_pred             CCCCCCCEEEEEeCCCcCcceeec-CCCCHHHHHHHHHHhc
Confidence            99  999999999987 3455665 8899999999999986

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.58  E-value=1.3e-14  Score=114.80  Aligned_cols=87  Identities=22%  Similarity=0.325  Sum_probs=76.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~~P  174 (290)
                      .+++++|+||++||++|+.+.|.+.++.++++++.|+.|+++.                       +..++++|+|.++|
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  103 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCc
Confidence            5789999999999999999999999999999999999999853                       56789999999999


Q ss_pred             ceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++++++ +|+  +. ...|..+.++|.++|++++
T Consensus       104 ~~~~id~~g~--i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A          104 AYAFVDPHGN--VD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             EEEEECTTCC--EE-EEESCCCHHHHHHHHHHHC
T ss_pred             eEEEECCCCC--EE-EEecCCCHHHHHHHHHHHh
Confidence            999995 554  54 4447889999999999876

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.58  E-value=9e-15  Score=117.15  Aligned_cols=85  Identities=14%  Similarity=0.283  Sum_probs=73.5

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~I  170 (290)
                      .++++||+||++||++|+.+.|.+.++.++++  ++.|+.|+++.                         +..++++|+|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            57999999999999999999999999999997  69999999864                         5689999999


Q ss_pred             cccCceEEE-eCCCceeeeecCCccCHHHHHHHHH
Q 022923          171 HVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALA  204 (290)
Q Consensus       171 ~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~  204 (290)
                      .++|+++++ ++|+  +.....|..+.++|.++|+
T Consensus       113 ~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          113 ITIPTSFLLNEKGE--IEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             CEESEEEEECTTCC--EEEEEESCCCHHHHHHHHC
T ss_pred             CccCeEEEEcCCCc--EEEEEcCCcCHHHHHHhhC
Confidence            999999999 4554  5544558889999988873

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.57  E-value=1.1e-14  Score=117.13  Aligned_cols=89  Identities=15%  Similarity=0.413  Sum_probs=76.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEec---------------------------cccHhHHHhcC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY---------------------------EEHKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~---------------------------d~~~~l~~~~~  169 (290)
                      .+++++|+||++||++|+.+.|.+.++.+++++ +.|+.|++                           +.+..+++.|+
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  107 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence            579999999999999999999999999999876 99999995                           44568999999


Q ss_pred             ccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          170 VHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       170 I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |.++|+++++ ++|+  +.....|..+.++|.++|++.+.
T Consensus       108 v~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A          108 NEYVPAYYVFDKTGQ--LRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             CCCSSEEEEECTTCB--EEEEEESCSTTHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCc--EEEEecCCCCHHHHHHHHHHHHh
Confidence            9999999999 4554  54444477889999999998764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.56  E-value=2e-14  Score=147.15  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=97.3

Q ss_pred             hhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHh
Q 022923           89 AQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS  167 (290)
Q Consensus        89 ~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~  167 (290)
                      +..|..+...+.+.+++ .++|.+.+. ..+++++|+|||+||++|+.+.|.++++++++. ++.|+.||+++++.++++
T Consensus       647 l~~fi~~~~~~~v~~l~-~~~~~~~~~-~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~  724 (780)
T 3apo_A          647 LRSWGLGFLPQASIDLT-PQTFNEKVL-QGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQK  724 (780)
T ss_dssp             HHHHHHTTSCCCSEEEC-HHHHHHHTT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHH
T ss_pred             HHHHHhhhcccccccCC-HHHHHHHHh-cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHh
Confidence            44566666666777775 467877664 368999999999999999999999999999984 699999999999999999


Q ss_pred             cCccccCceEEEeCCCc--eeeeecCCccCHHHHHHHHHhhCCC
Q 022923          168 LNVHVLPFFRFYRGAHG--RVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       168 ~~I~~~PT~~~~~~G~~--~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |+|.++||+++|++|+.  +..++..|..+.++|.++|++++..
T Consensus       725 ~~v~~~Pt~~~~~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~  768 (780)
T 3apo_A          725 AGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET  768 (780)
T ss_dssp             TTCCSSSEEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred             cCCCcCCEEEEEcCCCccccccCcccCCcCHHHHHHHHHHHHHH
Confidence            99999999999988872  1222222468999999999999843

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.56  E-value=1.5e-15  Score=119.11  Aligned_cols=78  Identities=9%  Similarity=0.119  Sum_probs=64.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc------ccHhHHHhcCccccCceEEEeCCCceeeeecC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE------EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSC  191 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d------~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~  191 (290)
                      .+++++|+|||+||++|+.+.|.|+++++.++     .||++      ++.+++++|+|.++||+++  +|+  .  +. 
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~--~--~~-   78 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR--T--YT-   78 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE--E--EE-
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-----EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE--E--ec-
Confidence            35778999999999999999999999998775     45555      6789999999999999777  665  2  33 


Q ss_pred             CccCHHHHHHHHHhhC
Q 022923          192 TNATIKKFKDALAKHT  207 (290)
Q Consensus       192 g~~~~~~l~~~L~k~~  207 (290)
                      |..+.++|.+++.-..
T Consensus        79 G~~~~~~l~~~~~~~~   94 (106)
T 3kp8_A           79 GVRSLEALAVASGYPL   94 (106)
T ss_dssp             SCCCHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHhCCcc
Confidence            8899999999986443

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.55  E-value=1.4e-14  Score=105.04  Aligned_cols=73  Identities=14%  Similarity=0.320  Sum_probs=62.9

Q ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCcc-CHHHH
Q 022923          122 VVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNA-TIKKF  199 (290)
Q Consensus       122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~-~~~~l  199 (290)
                      ..|+||++||++|+.+.|.+++++++++ ++.++.||   +.+++++|+|.++||+++  +|+  +...  |.. +.++|
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~--~~~~--G~~~~~~~l   72 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGE--LKIM--GRVASKEEI   72 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTE--EEEC--SSCCCHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCE--EEEc--CCCCCHHHH
Confidence            4689999999999999999999999987 68999998   788999999999999998  665  4333  666 88888


Q ss_pred             HHHH
Q 022923          200 KDAL  203 (290)
Q Consensus       200 ~~~L  203 (290)
                      .++|
T Consensus        73 ~~~l   76 (77)
T 1ilo_A           73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8875

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.55  E-value=2.5e-14  Score=116.18  Aligned_cols=92  Identities=16%  Similarity=0.320  Sum_probs=79.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccH-----------------------hHHHhcCccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK-----------------------SMCYSLNVHV  172 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~-----------------------~l~~~~~I~~  172 (290)
                      .++++||+||++||++|+.+.|.+.++.+++++  +.|+.|+++...                       .+++.|+|.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            579999999999999999999999999999864  999999988764                       7899999999


Q ss_pred             cCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCCCCC
Q 022923          173 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPDRC  211 (290)
Q Consensus       173 ~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~  211 (290)
                      +|++++++ +|+  +.....|..+.++|.++|+++.....
T Consensus       109 ~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~~~~~~~  146 (152)
T 2lja_A          109 IPRFILLDRDGK--IISANMTRPSDPKTAEKFNELLGLEG  146 (152)
T ss_dssp             SCCEEEECTTSC--EEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred             CCEEEEECCCCe--EEEccCCCCCHHHHHHHHHHHhcccc
Confidence            99999997 554  55555577899999999999875543

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.55  E-value=1.8e-15  Score=126.97  Aligned_cols=96  Identities=20%  Similarity=0.305  Sum_probs=74.9

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHh-HHHhcCc--cccCceEEE-eCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKS-MCYSLNV--HVLPFFRFY-RGA  182 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~-l~~~~~I--~~~PT~~~~-~~G  182 (290)
                      +.|....  ..+++|||+|||+||++|+.+.|.|.++++.+. ++.|+.||++.+.. ++.+|++  .++||++|| ++|
T Consensus        37 ~~~~~~~--~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G  114 (164)
T 1sen_A           37 DGKKEAA--ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG  114 (164)
T ss_dssp             HHHHHHH--HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS
T ss_pred             HHHHHHH--hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCC
Confidence            3444444  358999999999999999999999998776553 47888899988777 8889998  669999999 577


Q ss_pred             CceeeeecCC----------ccCHHHHHHHHHhhC
Q 022923          183 HGRVCSFSCT----------NATIKKFKDALAKHT  207 (290)
Q Consensus       183 ~~~v~~~~~g----------~~~~~~l~~~L~k~~  207 (290)
                      +  +.....|          ..+.++|.+.|++.+
T Consensus       115 ~--~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          115 K--VHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             C--BCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             C--EEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            6  3322224          378899999998775

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.55  E-value=9.7e-15  Score=127.59  Aligned_cols=120  Identities=13%  Similarity=0.053  Sum_probs=90.2

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEe-----CCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccccCceE
Q 022923          106 SAQDLVESLWHAGDKLVVVDFF-----SPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFR  177 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~Fy-----A~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~  177 (290)
                      +.+++.+.+..+..++|+|.||     ++||++|+.+.|.|.++++++   +++.|++||+++++++|++|+|+++||++
T Consensus         7 ~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~   86 (229)
T 2ywm_A            7 VRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIV   86 (229)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEE
T ss_pred             HHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEE
Confidence            3466777662224566666666     899999999999999998765   45999999999999999999999999999


Q ss_pred             EEeCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHhC
Q 022923          178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN  230 (290)
Q Consensus       178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~~  230 (290)
                      +|++|+ ....|. |.++.+++.+++.+++..   .+....++.+.++.+...
T Consensus        87 ~~~~~~-~~~~~~-G~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~~~~~~  134 (229)
T 2ywm_A           87 IEGDKD-YGIRYI-GLPAGLEFTTLINGIFHV---SQRKPQLSEKTLELLQVV  134 (229)
T ss_dssp             EESSSC-CCEEEE-SCCCTTHHHHHHHHHHHH---HTTCCSCCHHHHHHHTTC
T ss_pred             EECCCc-ccceec-CCccHHHHHHHHHHHHhc---cCCccCCCHHHHHHHHhc
Confidence            998654 455555 778888899998876521   113345666776666543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.54  E-value=4.8e-14  Score=115.06  Aligned_cols=90  Identities=16%  Similarity=0.288  Sum_probs=76.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc------------------------cHhHHHhcC--
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE------------------------HKSMCYSLN--  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~------------------------~~~l~~~~~--  169 (290)
                      .++++||+||++||++|+.+.|.+.++.++|.  ++.|+.|++|.                        ...+++.|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            68999999999999999999999999999984  59999999873                        345778899  


Q ss_pred             ccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          170 VHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       170 I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |.++|++++++ +|+  +.....|..+.++|.++|++....
T Consensus       103 v~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A          103 VGVLPFTVVEAPKCG--YRQTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             SCCSSEEEEEETTTT--EEEECCSCCCHHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEECCCCc--EEEEECCCCCHHHHHHHHHHHHHH
Confidence            99999998885 454  555555888999999999988644

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.53  E-value=5.4e-14  Score=114.43  Aligned_cols=90  Identities=20%  Similarity=0.268  Sum_probs=76.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------cHhHHHhcCcccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------HKSMCYSLNVHVL  173 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------~~~l~~~~~I~~~  173 (290)
                      .++++||+||++||++|+.+.|.+.++.++++  ++.|+.|+++.                      +..+++.|+|.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            57999999999999999999999999999885  49999999875                      3478999999999


Q ss_pred             CceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          174 PFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       174 PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      |++++++ +|+  +.....|..+.++|.++|++++..
T Consensus       105 P~~~lid~~G~--i~~~~~G~~~~~~l~~~l~~ll~~  139 (151)
T 2f9s_A          105 PTTFLINPEGK--VVKVVTGTMTESMIHDYMNLIKPG  139 (151)
T ss_dssp             CEEEEECTTSE--EEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             CeEEEECCCCc--EEEEEeCCCCHHHHHHHHHHHHhh
Confidence            9999994 444  554444778999999999998754

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.53  E-value=2.1e-14  Score=119.82  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHH--HCCCcEEEEEecc-ccHhHHHhcCccccCceEEEe-CCCceeeeecCC
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYR-GAHGRVCSFSCT  192 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~--~~~~v~~~~Vd~d-~~~~l~~~~~I~~~PT~~~~~-~G~~~v~~~~~g  192 (290)
                      ..+++|||+|||+||++|+.+.|.+.+..+  .+.+..|+.||+| +..+++.+|+|.++||++||+ +|+  +.....|
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~--~v~~~~G  119 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLT--VRADIAG  119 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSC--BCTTCCC
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCC--EEEEEeC
Confidence            358999999999999999999999986422  2222345555554 455678899999999999998 776  3323334


Q ss_pred             c----------cCHHHHHHHHHhhC
Q 022923          193 N----------ATIKKFKDALAKHT  207 (290)
Q Consensus       193 ~----------~~~~~l~~~L~k~~  207 (290)
                      .          .+.+++.+.+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          120 RYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             SCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             CcCCcccccchhhHHHHHHHHHHHH
Confidence            4          45666777666554

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.52  E-value=1.1e-14  Score=119.91  Aligned_cols=91  Identities=14%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEec----------------------------cccHhHHH
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNY----------------------------EEHKSMCY  166 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~----------------------------d~~~~l~~  166 (290)
                      ..++++||+||++||++|+.+.|.+.++.++|  .++.|+.|++                            +.+..+++
T Consensus        36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  115 (164)
T 2h30_A           36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ  115 (164)
T ss_dssp             CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence            35789999999999999999999999999885  3566665543                            34567899


Q ss_pred             hcCccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          167 SLNVHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       167 ~~~I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|+|.++||++++ ++|+  +.....|..+.++|.++|++.+..
T Consensus       116 ~~~v~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~~~~~  157 (164)
T 2h30_A          116 NLNISVYPSWALIGKDGD--VQRIVKGSINEAQALALIRNPNAD  157 (164)
T ss_dssp             HTTCCSSSEEEEECTTSC--EEEEEESCCCHHHHHHHHHCTTCC
T ss_pred             HcCCCccceEEEECCCCc--EEEEEcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999 4554  544445788999999999998754

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.52  E-value=7.2e-14  Score=114.40  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=75.4

Q ss_pred             CCCeEEEEEeCCCChHHHH-HHHHHHHHHHHCCC--cEEEEEec----------------------------cccHh---
Q 022923          118 GDKLVVVDFFSPGCGGCKA-LHPKICQLAEMNPD--VQFLQVNY----------------------------EEHKS---  163 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~-~~p~l~~la~~~~~--v~~~~Vd~----------------------------d~~~~---  163 (290)
                      .+|++||+||++||++|+. +.|.+.++.++|++  +.|+.|++                            +....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            5899999999999999999 69999999999964  99999986                            22334   


Q ss_pred             ---HHHhcCccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          164 ---MCYSLNVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       164 ---l~~~~~I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                         +++.|+|.++|++++++ +|+  +.....|..+.+++.+.|++++..
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGR--IRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSB--EEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhHHHhcccCccceEEEECCCCc--EEEEecCcCCHHHHHHHHHHHHhc
Confidence               89999999999999995 444  555555888999999999988743

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.51  E-value=7.3e-14  Score=113.85  Aligned_cols=87  Identities=23%  Similarity=0.321  Sum_probs=76.8

Q ss_pred             CeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------cccHhHHHhcCccc
Q 022923          120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------EEHKSMCYSLNVHV  172 (290)
Q Consensus       120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------d~~~~l~~~~~I~~  172 (290)
                      +++||+||++||++|+.+.|.+.++.+++ ++.|+.|++                           +....++++|+|.+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  109 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG  109 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence            89999999999999999999999999999 999999999                           36778999999999


Q ss_pred             cCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          173 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       173 ~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|++++++ +|  ++.....|..+.++|.++|+++...
T Consensus       110 ~P~~~lid~~G--~i~~~~~g~~~~~~l~~~l~~~~~~  145 (154)
T 3ia1_A          110 QPWTFVVDREG--KVVALFAGRAGREALLDALLLAGAD  145 (154)
T ss_dssp             SCEEEEECTTS--EEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred             ccEEEEECCCC--CEEEEEcCCCCHHHHHHHHHhccCc
Confidence            99988884 44  3555555888999999999999754

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.51  E-value=8.9e-14  Score=114.23  Aligned_cols=90  Identities=14%  Similarity=0.246  Sum_probs=76.5

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccHhHHHhc---------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSL---------------------------  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~---------------------------  168 (290)
                      .++++||+||++||++|+.+.|.+.++.++|++  +.|+.|+++...+.+++|                           
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            579999999999999999999999999999864  999999999877766666                           


Q ss_pred             CccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          169 NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       169 ~I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +|.++|++++++ +|+  +.....|..+.+++.++|++++..
T Consensus       113 ~i~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A          113 GITGIPTSFVIDASGN--VSGVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             CSCSSSEEEEECTTSB--EEEEECSCCCHHHHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCc--EEEEEcCCCCHHHHHHHHHHHHhh
Confidence            899999999884 444  555555888999999999988743

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.51  E-value=8.9e-14  Score=113.79  Aligned_cols=91  Identities=14%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             CCCeEEEEEeCCCChHHHHH-HHHHHHHHHHCC--CcEEEEEecc----------------------------ccH----
Q 022923          118 GDKLVVVDFFSPGCGGCKAL-HPKICQLAEMNP--DVQFLQVNYE----------------------------EHK----  162 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~-~p~l~~la~~~~--~v~~~~Vd~d----------------------------~~~----  162 (290)
                      .+|++||+||++||++|+.+ .|.+.++.++|+  ++.|+.|+++                            ...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            58999999999999999995 999999999996  5999999863                            122    


Q ss_pred             -hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          163 -SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       163 -~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                       .+++.|+|.++|++++++.++ ++.....|..+.++|.+.|++++..
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G-~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAG-DLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTS-EEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCCCCEEEEECCCC-CEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             589999999999999985332 4555555888999999999998743

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.51  E-value=1.1e-13  Score=109.02  Aligned_cols=87  Identities=17%  Similarity=0.196  Sum_probs=73.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEec----------------------------cccHhHHHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNY----------------------------EEHKSMCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~----------------------------d~~~~l~~~~  168 (290)
                      .++++||+||++||++|+.+.+.+.++.++++ ++.++.|++                            +.+..++++|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            58999999999999999999999999999986 588888853                            3355789999


Q ss_pred             CccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          169 NVHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       169 ~I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +|.++|+++++ ++|+  +.....|..+.+++.++|++.
T Consensus       101 ~v~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          101 GVRSYPTQAFIDKEGK--LVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TCCSSSEEEEECTTCC--EEEEEESCCCHHHHHHHHHHC
T ss_pred             CcccCCeEEEECCCCc--EEEeecCCCcHHHHHHHHHhh
Confidence            99999999999 4554  554455888999999999874

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.51  E-value=1.9e-14  Score=122.74  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=62.3

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHH-H--HHHHHHCC-CcEEEEEeccccHhHHHhc--------CccccC
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-I--CQLAEMNP-DVQFLQVNYEEHKSMCYSL--------NVHVLP  174 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~-l--~~la~~~~-~v~~~~Vd~d~~~~l~~~~--------~I~~~P  174 (290)
                      .+.|....  ..+|+|||+|||+||++|+.|.+. +  .++++.+. ++.+++||.++++++.+.|        +|.++|
T Consensus        29 ~ea~~~A~--~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~P  106 (173)
T 3ira_A           29 EEAFEKAR--KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWP  106 (173)
T ss_dssp             HHHHHHHH--HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSS
T ss_pred             HHHHHHHH--HhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCc
Confidence            45666655  458999999999999999999993 3  35665553 5999999999999999988        999999


Q ss_pred             ceEEEe-CCC
Q 022923          175 FFRFYR-GAH  183 (290)
Q Consensus       175 T~~~~~-~G~  183 (290)
                      |++||+ +|+
T Consensus       107 t~v~l~~dG~  116 (173)
T 3ira_A          107 LNIIMTPGKK  116 (173)
T ss_dssp             EEEEECTTSC
T ss_pred             ceeeECCCCC
Confidence            999997 665

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.50  E-value=1.6e-13  Score=111.46  Aligned_cols=93  Identities=18%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccH----------------------hHHHhcCcccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK----------------------SMCYSLNVHVL  173 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~----------------------~l~~~~~I~~~  173 (290)
                      .++++||+||++||++|+.+.|.+.++.++|++  +.|+.|+++...                      .+++.|+|.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            578999999999999999999999999999864  899999988654                      67889999999


Q ss_pred             CceEEE-eCCCceeeeecCCc--cCHHHHHHHHHhhCCCCCC
Q 022923          174 PFFRFY-RGAHGRVCSFSCTN--ATIKKFKDALAKHTPDRCG  212 (290)
Q Consensus       174 PT~~~~-~~G~~~v~~~~~g~--~~~~~l~~~L~k~~~~~~s  212 (290)
                      |+++++ ++|+  +.....|.  .+.++|.++|++++....+
T Consensus       107 P~~~lid~~G~--i~~~~~g~~~~~~~~l~~~i~~~~~~~~~  146 (152)
T 3gl3_A          107 PTSFLIDRNGK--VLLQHVGFRPADKEALEQQILAALGGNEG  146 (152)
T ss_dssp             SEEEEECTTSB--EEEEEESCCTTTHHHHHHHHHHHTC----
T ss_pred             CeEEEECCCCC--EEEEEccCCCcCHHHHHHHHHHHHccccc
Confidence            998888 4554  44333343  5679999999999865433

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.50  E-value=1.4e-13  Score=113.79  Aligned_cols=86  Identities=13%  Similarity=0.337  Sum_probs=74.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc------------------cc------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE------------------EH------------------  161 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d------------------~~------------------  161 (290)
                      .++++||+||++||++|+.+.|.+.++.++|+++.|+.|+++                  +.                  
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM  115 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence            579999999999999999999999999999999999999998                  44                  


Q ss_pred             ----HhHHHhcCccccCceEEEe-CCCceeeeecCCcc-CHHHHHHHHHhhC
Q 022923          162 ----KSMCYSLNVHVLPFFRFYR-GAHGRVCSFSCTNA-TIKKFKDALAKHT  207 (290)
Q Consensus       162 ----~~l~~~~~I~~~PT~~~~~-~G~~~v~~~~~g~~-~~~~l~~~L~k~~  207 (290)
                          ..+++.|+|.++|++++++ +|+  +..  .|.. +.++|.+.|++++
T Consensus       116 ~~d~~~~~~~~~v~~~P~~~lid~~G~--i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          116 VMDDGSLVEKFNVRSIDYIVIMDKSSN--VLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             EECCSHHHHHTTCCSSSEEEEEETTCC--EEE--EEESCCHHHHHHHHHHC-
T ss_pred             EeChHHHHHHhCCCCceEEEEEcCCCc--EEE--eCCCCCHHHHHHHHHHHh
Confidence                2789999999999999995 454  444  4677 8999999999875

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.49  E-value=9.1e-14  Score=111.79  Aligned_cols=86  Identities=8%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CC--cEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PD--VQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~--v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .++++||+||++||++|+.+.|.+.++.++| ++  +.|+.|+++.                         +..++++|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            5799999999999999999999999999999 54  8999999886                         448899999


Q ss_pred             ccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          170 VHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       170 I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      |.++|++++++ +|+  +.....   +.+++.+.|++++.
T Consensus       112 v~~~P~~~lid~~G~--i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTLPTNILLSPTGK--ILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSSSEEEEECTTSB--EEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCcCEEEEECCCCe--EEEecC---CHHHHHHHHHHHHc
Confidence            99999999994 554  544432   88999999988763

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.49  E-value=4e-14  Score=113.89  Aligned_cols=87  Identities=16%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccHh-------------------------HHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKS-------------------------MCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~-------------------------l~~~~~I  170 (290)
                      .++++||+||++||++|+.+.|.+.++.++|++  +.|+.|+++.+.+                         +++.|+|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            579999999999999999999999999999864  9999999997766                         9999999


Q ss_pred             cccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhh
Q 022923          171 HVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       171 ~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      .++|++++++ +|+  +.....|..+.+++.+.+.+.
T Consensus       110 ~~~P~~~lid~~G~--i~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A          110 YATPVLYVLDKNKV--IIAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             CSSCEEEEECTTCB--EEEESCCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCc--EEEecCCHHHHHHHHHHHHHH
Confidence            9999999994 454  555555777777777777654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.48  E-value=1.8e-13  Score=111.82  Aligned_cols=87  Identities=17%  Similarity=0.267  Sum_probs=70.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccc-------------------------cHhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE-------------------------HKSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~-------------------------~~~l~~~~~I  170 (290)
                      .+++++|+||++||++|+.+.|.+.++.++|++  +.|+.|+++.                         +..+++.|+|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            579999999999999999999999999998864  9999999987                         5789999999


Q ss_pred             cccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          171 HVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       171 ~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      .++|++++++ +|+  +.....   +.+++.++|++++..
T Consensus       108 ~~~P~~~lid~~G~--i~~~~~---~~~~l~~~l~~l~~~  142 (152)
T 2lrn_A          108 VGFPHIILVDPEGK--IVAKEL---RGDDLYNTVEKFVNG  142 (152)
T ss_dssp             CSSCEEEEECTTSE--EEEECC---CTTHHHHHHHHHHTS
T ss_pred             CcCCeEEEECCCCe--EEEeeC---CHHHHHHHHHHHHhh
Confidence            9999999994 454  544332   345677777766543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.47  E-value=9e-14  Score=105.45  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      +++||++||++|+.+.|.+++++..+    +.+||++++++++++|+++ +||+++ .+|+  ...   |..+.++|.++
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~--~v~---g~~~~~~L~~~   71 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGR--ELD---WPFDAPRLRAW   71 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCC--EEE---SCCCHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCE--EEe---CCCCHHHHHHH
Confidence            78899999999999999999986554    7899999999999999998 999998 7886  332   67899999999


Q ss_pred             HHhhCC
Q 022923          203 LAKHTP  208 (290)
Q Consensus       203 L~k~~~  208 (290)
                      |++++.
T Consensus        72 l~~~~~   77 (87)
T 1ttz_A           72 LDAAPH   77 (87)
T ss_dssp             HHTCC-
T ss_pred             HHHHHH
Confidence            988763

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.47  E-value=9.2e-14  Score=109.54  Aligned_cols=78  Identities=12%  Similarity=0.099  Sum_probs=69.1

Q ss_pred             CeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923          120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      .++|++||++||++|+.+.+.+++++++++ +.|..||++++++++.+|+++ +|++++|.+|+  .. . .|..+.++|
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~--~v-~-~g~~~~~~L  102 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDK--EL-C-HYFLDSDVI  102 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTE--EE-E-CSSCCCHHH
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCE--EE-E-ecCCCHHHH
Confidence            367999999999999999999999999985 999999999999999999997 99999999986  33 2 267888888


Q ss_pred             HHHH
Q 022923          200 KDAL  203 (290)
Q Consensus       200 ~~~L  203 (290)
                      +++|
T Consensus       103 ~~~L  106 (107)
T 2fgx_A          103 GAYL  106 (107)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8886

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.46  E-value=9e-14  Score=115.25  Aligned_cols=86  Identities=15%  Similarity=0.239  Sum_probs=70.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec-----------------------cccHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~-----------------------d~~~~l~~~~~I~~~P  174 (290)
                      .++++||+||++||++|+.+.|.+.++.++  ++.|+.|++                       |.+..++++|+|.++|
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  127 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  127 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence            689999999999999999999999999987  788888884                       4566789999999999


Q ss_pred             ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++++ ++|+  +.....|..+.+++.++|++++
T Consensus       128 ~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          128 ETFLIDGNGI--IRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             EEEEECTTSB--EEEEEESCCCHHHHHHTTHHHH
T ss_pred             EEEEECCCCe--EEEEEeCCCCHHHHHHHHHHHH
Confidence            76555 4554  5544447788999988888764

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.45  E-value=2.1e-13  Score=110.81  Aligned_cols=89  Identities=19%  Similarity=0.323  Sum_probs=74.2

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEec-----------------------cccHhHHHhcCccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNY-----------------------EEHKSMCYSLNVHV  172 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~-----------------------d~~~~l~~~~~I~~  172 (290)
                      .++++||+||++||++|+.+.|.+.++.++++  ++.|+.|+.                       +.+..+++.|+|.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            57999999999999999999999999999986  488887663                       44667999999999


Q ss_pred             cCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          173 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       173 ~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +|++++++ +|+  +.....|..+.++|.++|++++.
T Consensus       107 ~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A          107 YPTSVLIGKKGE--ILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             SSEEEEECSSSC--CCEEEESSCCHHHHHHHHHHHHH
T ss_pred             cCeEEEECCCCc--EEEEEcCCCCHHHHHHHHHHHHH
Confidence            99999994 554  44444478899999999998864

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.44  E-value=4e-13  Score=107.93  Aligned_cols=85  Identities=15%  Similarity=0.367  Sum_probs=68.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHH---HHHHC--CCcEEEEEeccccHhH------------------------HHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQ---LAEMN--PDVQFLQVNYEEHKSM------------------------CYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~---la~~~--~~v~~~~Vd~d~~~~l------------------------~~~~  168 (290)
                      .++++||+||++||++|+.+.|.+.+   +.++|  .++.|+.|++|...+.                        ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            58999999999999999999999988   88777  3599999998865543                        3489


Q ss_pred             CccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          169 NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       169 ~I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|.++|++++++ +|+  +..   +..+.+++.++|+++.
T Consensus       106 ~v~~~P~~~lid~~G~--i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKR--VIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CCCSSSEEEEECTTCB--EEE---CSCCHHHHHHHHHC--
T ss_pred             CCCCCCeEEEECCCCC--EEe---cCCCHHHHHHHHHHHc
Confidence            999999999995 443  443   4678999999998864

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.44  E-value=4.2e-13  Score=108.33  Aligned_cols=84  Identities=15%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHH---HHHHC--CCcEEEEEeccccHh------------------------HHHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQ---LAEMN--PDVQFLQVNYEEHKS------------------------MCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~---la~~~--~~v~~~~Vd~d~~~~------------------------l~~~~  168 (290)
                      .++++||+||++||++|+.+.|.+.+   +.++|  .++.++.|+.|...+                        +++.|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            57999999999999999999999999   88887  469999999886533                        47789


Q ss_pred             CccccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          169 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       169 ~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      +|.++|++++++.++ ++....   .+.+++.++|++
T Consensus       110 ~v~~~P~~~lid~~G-~i~~~~---~~~~~l~~~l~e  142 (142)
T 3eur_A          110 DLRAIPTLYLLDKNK-TVLLKD---ATLQKVEQYLAE  142 (142)
T ss_dssp             CCTTCSEEEEECTTC-BEEEEE---ECHHHHHHHHHC
T ss_pred             CCCcCCeEEEECCCC-cEEecC---CCHHHHHHHHhC
Confidence            999999999995433 454433   357888888764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.43  E-value=3.3e-13  Score=109.76  Aligned_cols=87  Identities=16%  Similarity=0.236  Sum_probs=71.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-----------------------ccHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------------------EHKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------------------~~~~l~~~~~I~~~P  174 (290)
                      .+++++|+||++||++|+.+.|.+.++.++ +++.|+.|+++                       .+..+++.|+|.++|
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  119 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  119 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccC
Confidence            478999999999999999999999999887 67999998864                       345788999999999


Q ss_pred             ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++++ ++|+  +.....|..+.+++.++|++++
T Consensus       120 ~~~~id~~G~--i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          120 ETFVVGREGT--IVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             EEEEECTTSB--EEEEEESCCCHHHHHHTHHHHH
T ss_pred             eEEEEcCCCC--EEEEEeCCCCHHHHHHHHHHHH
Confidence            77766 4554  5444447788999998888764

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.43  E-value=9.5e-13  Score=108.24  Aligned_cols=88  Identities=20%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------cHhHHHhcCccccCce
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------HKSMCYSLNVHVLPFF  176 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------~~~l~~~~~I~~~PT~  176 (290)
                      .++++||+||++||++|+.+.|.+.++.++++  ++.|+.|+++.                   +..+++.|+|.++|++
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT  119 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence            57899999999999999999999999999996  69999999987                   6789999999999998


Q ss_pred             EEEe-CCCceeeeecCCc--cCHHHHHHHHHhhC
Q 022923          177 RFYR-GAHGRVCSFSCTN--ATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~-~G~~~v~~~~~g~--~~~~~l~~~L~k~~  207 (290)
                      ++++ +|+  +.....|.  .+.+++++.+.+..
T Consensus       120 ~lid~~G~--i~~~~~G~~~~~~~~~~~~~~~~~  151 (158)
T 3hdc_A          120 FIVDRKGI--IRQRVTGGIEWDAPKVVSYLKSLE  151 (158)
T ss_dssp             EEECTTSB--EEEEEESCCCTTSHHHHHHHHTTC
T ss_pred             EEEcCCCC--EEEEEeCCCccchHHHHHHHHhhc
Confidence            8884 444  44333344  56778888887765

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.42  E-value=9.3e-13  Score=107.05  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=71.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEecccc-----------------------HhHHHhcCccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEH-----------------------KSMCYSLNVHV  172 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~-----------------------~~l~~~~~I~~  172 (290)
                      .++++||+||++||++|+.+.|.+.++.+++++  +.|+.|+++.+                       ..+++.|+|.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            579999999999999999999999999999965  89999998875                       34889999999


Q ss_pred             cCceEEEe-CCCceeeeecCCc--cCHHHHHHHHHhhCCC
Q 022923          173 LPFFRFYR-GAHGRVCSFSCTN--ATIKKFKDALAKHTPD  209 (290)
Q Consensus       173 ~PT~~~~~-~G~~~v~~~~~g~--~~~~~l~~~L~k~~~~  209 (290)
                      +|+++++. +|+  +.....|.  .+.+++.++|++....
T Consensus       107 ~P~~~lid~~G~--i~~~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A          107 VPETFVIDRHGV--ILKKVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             BCEEEEECTTSB--EEEEEESCCCTTSHHHHHHHHTC---
T ss_pred             CCeEEEECCCCc--EEEEEcCCCccccHHHHHHHHHHHHH
Confidence            99877774 554  44433354  3778999999987643

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.41  E-value=6.6e-13  Score=111.78  Aligned_cols=88  Identities=13%  Similarity=0.217  Sum_probs=71.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--c------EEEEEeccc-cHhHHHhc--------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--V------QFLQVNYEE-HKSMCYSL--------------------  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v------~~~~Vd~d~-~~~l~~~~--------------------  168 (290)
                      .+|++||+||++||++|+.+.|.|.++.++|++  +      .|+.|+++. +.+..++|                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            579999999999999999999999999998743  7      999999988 66666655                    


Q ss_pred             -----CccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          169 -----NVHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       169 -----~I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                           +|.++|+++++ ++|+  +.....|..+.++|.++|++++
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHR--PAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSC--EEEEECSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCc--EEEEEcCCCCHHHHHHHHHHHH
Confidence                 78999987766 4554  5555557789999999998875

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.40  E-value=8.8e-13  Score=106.50  Aligned_cols=66  Identities=14%  Similarity=0.325  Sum_probs=58.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEecccc------------------------HhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~------------------------~~l~~~~~I  170 (290)
                      .++++||+||++||++|+.+.|.+.++.++|+   ++.++.|++|..                        ..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            57899999999999999999999999999886   589999988752                        578999999


Q ss_pred             cccCceEEEe--CCC
Q 022923          171 HVLPFFRFYR--GAH  183 (290)
Q Consensus       171 ~~~PT~~~~~--~G~  183 (290)
                      .++||+++++  +|+
T Consensus       107 ~~~P~~~lid~~~G~  121 (144)
T 1i5g_A          107 KSIPTLVGVEADSGN  121 (144)
T ss_dssp             CSSSEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCc
Confidence            9999999996  565

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.40  E-value=9e-13  Score=106.84  Aligned_cols=66  Identities=15%  Similarity=0.311  Sum_probs=58.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEecccc------------------------HhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~------------------------~~l~~~~~I  170 (290)
                      .++++||+||++||++|+.+.|.+.+++++|+   ++.++.|++|..                        ..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            57899999999999999999999999999886   589999988753                        478999999


Q ss_pred             cccCceEEEe--CCC
Q 022923          171 HVLPFFRFYR--GAH  183 (290)
Q Consensus       171 ~~~PT~~~~~--~G~  183 (290)
                      .++||+++++  +|+
T Consensus       107 ~~~Pt~~lid~~~G~  121 (146)
T 1o8x_A          107 ESIPTLIGVDADSGD  121 (146)
T ss_dssp             CSSSEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCe
Confidence            9999999997  555

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.40  E-value=1.6e-12  Score=106.78  Aligned_cols=85  Identities=14%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHh-----------------------HHHhcCccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKS-----------------------MCYSLNVHV  172 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~-----------------------l~~~~~I~~  172 (290)
                      .++++||+||++||++|+...|.+.++.++|+  ++.|+.|++|...+                       +++.|+|.+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            47899999999999999999999999999885  49999999987653                       889999999


Q ss_pred             cCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      +|++++++..+ ++.....|..+.++....+
T Consensus       114 ~P~~~lid~~G-~i~~~~~g~~~~e~~~~~~  143 (152)
T 2lrt_A          114 LPSVFLVNRNN-ELSARGENIKDLDEAIKKL  143 (152)
T ss_dssp             CSEEEEEETTT-EEEEETTTCSCHHHHHHHH
T ss_pred             CceEEEECCCC-eEEEecCCHHHHHHHHHHH
Confidence            99999995332 4666666777776655444

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=1.2e-12  Score=106.46  Aligned_cols=85  Identities=8%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             CCCeEEEEEeCCCChH--HHHHHHHHHHHHHHC---CCcEEEEEeccccH-------------------------hHHHh
Q 022923          118 GDKLVVVDFFSPGCGG--CKALHPKICQLAEMN---PDVQFLQVNYEEHK-------------------------SMCYS  167 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~--Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~-------------------------~l~~~  167 (290)
                      .+++++|+||++||++  |+.+.|.+.++.++|   .++.|+.|++|...                         .+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            5799999999999999  999999999999988   45999999988654                         78999


Q ss_pred             cCccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          168 LNVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |+|.++|++++++ +|+  +....   .+.+++.+.|++++
T Consensus       112 ~~v~~~P~~~lid~~G~--i~~~~---~~~~~l~~~l~~ll  147 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGK--ILAKN---LRGEELKKKIENIV  147 (150)
T ss_dssp             TTCCSSSEEEEECTTSB--EEEES---CCHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCE--EEEcc---CCHHHHHHHHHHHH
Confidence            9999999999994 444  55443   27778888877654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.39  E-value=1e-12  Score=105.72  Aligned_cols=66  Identities=15%  Similarity=0.339  Sum_probs=58.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccc------------------------cHhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE------------------------HKSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~------------------------~~~l~~~~~I  170 (290)
                      .++++||+||++||++|+.+.|.+.+++++++   ++.++.|++|.                        +..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            58899999999999999999999999999876   68899998875                        3468999999


Q ss_pred             cccCceEEEe--CCC
Q 022923          171 HVLPFFRFYR--GAH  183 (290)
Q Consensus       171 ~~~PT~~~~~--~G~  183 (290)
                      .++||+++++  +|+
T Consensus       107 ~~~Pt~~lid~~~G~  121 (144)
T 1o73_A          107 ESIPTLITINADTGA  121 (144)
T ss_dssp             CSSSEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCe
Confidence            9999999998  554

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.38  E-value=1.4e-12  Score=108.84  Aligned_cols=72  Identities=15%  Similarity=0.362  Sum_probs=61.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEecccc------------------------HhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~------------------------~~l~~~~~I  170 (290)
                      .+|++||+||++||++|+.+.|.+.++.++|+   ++.|+.|++|..                        ..+++.|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            57999999999999999999999999999885   588999988865                        678999999


Q ss_pred             cccCceEEEeCCCceeeee
Q 022923          171 HVLPFFRFYRGAHGRVCSF  189 (290)
Q Consensus       171 ~~~PT~~~~~~G~~~v~~~  189 (290)
                      .++||+++++..++++...
T Consensus       127 ~~~Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDTVTT  145 (165)
T ss_dssp             CSSSEEEEEETTTCCEEES
T ss_pred             CCCCEEEEEeCCCCEEEec
Confidence            9999999997431235443

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.38  E-value=1.5e-12  Score=109.78  Aligned_cols=86  Identities=21%  Similarity=0.313  Sum_probs=71.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec-----------------------cccHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~-----------------------d~~~~l~~~~~I~~~P  174 (290)
                      .++++||+||++||++|+.+.|.+.++.++  ++.|+.|++                       |.+..+++.|+|.++|
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  134 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAP  134 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCC
Confidence            579999999999999999999999999988  788998885                       3345688999999999


Q ss_pred             ceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++++++ +|+  +.....|..+.+++.+.|++.+
T Consensus       135 ~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          135 ETYLIDKQGI--IRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             EEEEECTTCB--EEEEEESCCCHHHHHHHTHHHH
T ss_pred             eEEEECCCCe--EEEEEcCCCCHHHHHHHHHHHH
Confidence            887774 444  5555557788988888887765

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.36  E-value=2.1e-12  Score=104.28  Aligned_cols=83  Identities=7%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecccc--------------------------HhHHHhcC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEH--------------------------KSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~--------------------------~~l~~~~~  169 (290)
                      .+|+++|+||++||++|+.+.|.+.++.++|+  ++.|+.|++|..                          ..+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            57999999999999999999999999999985  499999988743                          25778999


Q ss_pred             ccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHh
Q 022923          170 VHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       170 I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      |.++|++++++ +|+  +....   ...+++.+.|++
T Consensus       111 v~~~P~~~lid~~G~--i~~~~---~~~~~l~~~l~~  142 (143)
T 4fo5_A          111 LRKGFKNFLINDEGV--IIAAN---VTPEKLTEILKA  142 (143)
T ss_dssp             GGGCCCEEEECTTSB--EEEES---CCHHHHHHHHTC
T ss_pred             CCCCCcEEEECCCCE--EEEcc---CCHHHHHHHHHh
Confidence            99999999886 444  55443   346677776654

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.35  E-value=3.3e-12  Score=107.94  Aligned_cols=88  Identities=16%  Similarity=0.191  Sum_probs=70.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc-----------------------------ccHhHHHh
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-----------------------------EHKSMCYS  167 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d-----------------------------~~~~l~~~  167 (290)
                      .+|++||+||++||++|+.+.|.+.++.++|.+ +.|+.|+++                             .+..+++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            579999999999999999999999999999977 999999983                             35578999


Q ss_pred             cCccccCceEEEe-CCCceeeeec--------CCccCHHHHHHHHHhhC
Q 022923          168 LNVHVLPFFRFYR-GAHGRVCSFS--------CTNATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~~~PT~~~~~-~G~~~v~~~~--------~g~~~~~~l~~~L~k~~  207 (290)
                      |+|.++|++++++ +|+  +....        .|..+.++|.+.|++++
T Consensus       112 ~~v~~~P~~~lid~~G~--i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll  158 (188)
T 2cvb_A          112 YRALRTPEVFLFDERRL--LRYHGRVNDNPKDPSKVQSHDLEAAIEALL  158 (188)
T ss_dssp             TTCCEESEEEEECTTCB--EEEEECSSSCTTCGGGCCCCHHHHHHHHHH
T ss_pred             cCCCCCCeEEEECCCCc--EEEEEecCCccccccccCHHHHHHHHHHHH
Confidence            9999999999994 444  44331        12236678888887765

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.34  E-value=1.8e-12  Score=115.55  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=82.4

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCC--ChHHHHHHHHHHHHHHHCCC------cEEEEEeccccHhHHHhcCccc
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD------VQFLQVNYEEHKSMCYSLNVHV  172 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~W--C~~Ck~~~p~l~~la~~~~~------v~~~~Vd~d~~~~l~~~~~I~~  172 (290)
                      +....+.++|.+.+.. -+++|+|.||++|  |++|+.+.+.++++++.++.      +.|+.+|++++++++++|+|++
T Consensus         8 ~~~~~~~~ql~~~~~~-~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~   86 (243)
T 2hls_A            8 DLSEDFRRELRETLAE-MVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVER   86 (243)
T ss_dssp             CCCHHHHHHHHHHHTT-CCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCS
T ss_pred             hCCHHHHHHHHHHHHh-CCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCc
Confidence            3445556778777743 4689999999999  99999999999999999766      9999999999999999999999


Q ss_pred             cCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +||+++| +|   ...|. |..+.+++..++..++
T Consensus        87 ~Pt~~i~-~g---~~~~~-G~~~~~~l~~fv~~~l  116 (243)
T 2hls_A           87 VPTVAFL-GG---EVRWT-GIPAGEEIRALVEVIM  116 (243)
T ss_dssp             SSEEEET-TT---TEEEE-SCCCTTHHHHHHHHHH
T ss_pred             CCEEEEE-CC---ceeEc-CCCcHHHHHHHHHHHH
Confidence            9999999 55   33444 5556667777776653

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.34  E-value=3.3e-12  Score=106.76  Aligned_cols=97  Identities=9%  Similarity=0.173  Sum_probs=72.1

Q ss_pred             HHHHHHH--hcCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHC-CCcEEEEEeccc--cHhHHHhcCccccCceEEEe
Q 022923          109 DLVESLW--HAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMN-PDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       109 ~f~~~l~--~~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~-~~v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~~~  180 (290)
                      +|++.+.  ...+|+|||+||++||..|+.|...+   .++.+.+ .++.++++|++.  +..+.++|+|.++|+++|++
T Consensus        30 ~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld  109 (153)
T 2dlx_A           30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILD  109 (153)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEEC
T ss_pred             CHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEe
Confidence            3444443  23589999999999999999997654   3444443 368999999975  45688999999999999996


Q ss_pred             CC-CceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GA-HGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G-~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .. +..+...  ++.+.++|.++|++.+
T Consensus       110 ~~~G~~l~~~--~g~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          110 PRTGQKLVEW--HQLDVSSFLDQVTGFL  135 (153)
T ss_dssp             TTTCCCCEEE--SSCCHHHHHHHHHHHH
T ss_pred             CCCCcEeeec--CCCCHHHHHHHHHHHH
Confidence            53 2234443  3489999999887764

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.34  E-value=6.2e-12  Score=117.04  Aligned_cols=118  Identities=9%  Similarity=0.122  Sum_probs=97.2

Q ss_pred             hhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc--ccHhH
Q 022923           88 KAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE--EHKSM  164 (290)
Q Consensus        88 ~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d--~~~~l  164 (290)
                      .+.+|......|.+.+++. +++...+. ...++++|+||++||++|+.+.+.|.+++++|.+ +.|+.||++  ++..+
T Consensus       106 ~i~~fi~~~~~p~v~~~~~-~~~~~~~~-~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~  183 (361)
T 3uem_A          106 NLLDFIKHNQLPLVIEFTE-QTAPKIFG-GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRI  183 (361)
T ss_dssp             HHHHHHHHHSSCSEEECST-TTHHHHHS-CSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHH
T ss_pred             HHHHHHHHcCCCcceecCc-ccHHHHhc-CCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHH
Confidence            4567888888888888876 46666653 3456789999999999999999999999999964 999999999  79999


Q ss_pred             HHhcCccc--cCceEEEeCCCceeeeec--CCccCHHHHHHHHHhhCC
Q 022923          165 CYSLNVHV--LPFFRFYRGAHGRVCSFS--CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       165 ~~~~~I~~--~PT~~~~~~G~~~v~~~~--~g~~~~~~l~~~L~k~~~  208 (290)
                      ++.|+|.+  +|++++|..|+ ....|.  .+..+.+.|.+|+++++.
T Consensus       184 ~~~fgi~~~~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~l~  230 (361)
T 3uem_A          184 LEFFGLKKEECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRFLE  230 (361)
T ss_dssp             HHHTTCCTTTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHHHT
T ss_pred             HHHcCCCccCCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHHhc
Confidence            99999998  99999998865 233443  367999999999998864

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.33  E-value=3.4e-12  Score=105.55  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=71.6

Q ss_pred             CCCeEEEEEeCCCChH-HHHHHHHHHHHHHHCC-----CcEEEEEecccc----------------------------Hh
Q 022923          118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMNP-----DVQFLQVNYEEH----------------------------KS  163 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~-Ck~~~p~l~~la~~~~-----~v~~~~Vd~d~~----------------------------~~  163 (290)
                      .+|++||+||++||++ |+...|.+.++.++|+     ++.|+.|++|..                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5899999999999997 9999999999999987     699999998742                            35


Q ss_pred             HHHhcC---------------ccccCceEEEeCCCceeeeecCCcc--CHHHHHHHHHhhC
Q 022923          164 MCYSLN---------------VHVLPFFRFYRGAHGRVCSFSCTNA--TIKKFKDALAKHT  207 (290)
Q Consensus       164 l~~~~~---------------I~~~PT~~~~~~G~~~v~~~~~g~~--~~~~l~~~L~k~~  207 (290)
                      +++.|+               |.++|+++++++|  ++.....|..  +.++|.+.|++++
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G--~i~~~~~g~~~~~~~~l~~~l~~ll  172 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEG--RLVLLYSPDKAEATDRVVADLQALL  172 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETT--EEEEEECHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECC--EEEEEECCCCCCCHHHHHHHHHHhC
Confidence            666665               5689999999844  4655555666  8999999998753

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.33  E-value=3.2e-12  Score=108.42  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             CCC-eEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc-----------------------------ccHhHH
Q 022923          118 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE-----------------------------EHKSMC  165 (290)
Q Consensus       118 ~~k-~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d-----------------------------~~~~l~  165 (290)
                      .++ ++||+||++||++|+.+.|.+.++.++|.  ++.|+.|+++                             .+..++
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA  123 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence            355 69999999999999999999999999885  4999999983                             355789


Q ss_pred             HhcCccccCceEEEe-CCCceeeee---------cCCccCHHHHHHHHHhhC
Q 022923          166 YSLNVHVLPFFRFYR-GAHGRVCSF---------SCTNATIKKFKDALAKHT  207 (290)
Q Consensus       166 ~~~~I~~~PT~~~~~-~G~~~v~~~---------~~g~~~~~~l~~~L~k~~  207 (290)
                      +.|+|.++|++++++ +|+  +...         ..|..+.++|.+.|++++
T Consensus       124 ~~~~v~~~P~~~lid~~G~--i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          124 KAYDAACTPDFYIFDRDLK--CVYRGQLDDSRPNNGIPVTGESIRAALDALL  173 (196)
T ss_dssp             HHHTCCEESEEEEEETTCB--EEEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred             HHhCCCCCCeEEEEcCCCe--EEEccccCcccccccCccCHHHHHHHHHHHH
Confidence            999999999999995 554  4433         235568889998888775

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.32  E-value=8.2e-13  Score=103.24  Aligned_cols=81  Identities=15%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-----HhHHHhcCccccCceEEEeCCCceeeeecCCc
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN  193 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~  193 (290)
                      ++.+++ ||++||++|+.+.|.|+++...   +.++.||.+.+     ..++++|+|.++||+  |.+|+ .+..+. |.
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~-~v~~~~-~~   90 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGK-QIGGCD-TV   90 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTE-EEECHH-HH
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCE-EECChH-HH
Confidence            456666 9999999999999999988543   56777776655     569999999999999  45775 333322 22


Q ss_pred             c---CHHHHHHHHHhhC
Q 022923          194 A---TIKKFKDALAKHT  207 (290)
Q Consensus       194 ~---~~~~l~~~L~k~~  207 (290)
                      .   +.++|.++|+++.
T Consensus        91 ~~~~~~~~l~~~l~~~g  107 (116)
T 2e7p_A           91 VEKHQRNELLPLLQDAA  107 (116)
T ss_dssp             HHHHHTTCHHHHHHHTT
T ss_pred             HHHHhCChHHHHHHHcc
Confidence            2   5567888887753

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.31  E-value=9.4e-12  Score=104.79  Aligned_cols=89  Identities=13%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecccc-----HhHHHhcCcc-------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEH-----KSMCYSLNVH-------------------  171 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~-----~~l~~~~~I~-------------------  171 (290)
                      .+|++||+||++||++|+.+.|.+.++.++|+  ++.++.|++|..     ..+++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            57999999999999999999999999999986  699999998864     4566777774                   


Q ss_pred             ----ccCceEEEe-CCCceeeeecCCcc--CHHHHHHHHHhhCC
Q 022923          172 ----VLPFFRFYR-GAHGRVCSFSCTNA--TIKKFKDALAKHTP  208 (290)
Q Consensus       172 ----~~PT~~~~~-~G~~~v~~~~~g~~--~~~~l~~~L~k~~~  208 (290)
                          ++|++++++ +|+  +.....|..  +.+++.++|++++.
T Consensus       139 ~~~~~~P~~~lid~~G~--i~~~~~g~~~~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGC--EIATIAGPAEWASEDALKLIRAATG  180 (186)
T ss_dssp             TCCSSSSEEEEECTTSB--EEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCC--EEEEEecCCccCHHHHHHHHHHHhc
Confidence                899999984 444  444333554  47889999998864

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.29  E-value=7.3e-12  Score=117.89  Aligned_cols=88  Identities=13%  Similarity=0.190  Sum_probs=74.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------------cHhHHHhc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~~  168 (290)
                      .+|++||+||++||++|+.+.|.|.++.++|+  ++.|+.|++++                           +..+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            58999999999999999999999999999986  49999998752                           35789999


Q ss_pred             CccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          169 NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       169 ~I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|.++|++++++ +|+  +.....|..+.+++.++|++++
T Consensus       161 gV~~~Pt~~lID~~G~--Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          161 RNRYWPAEYLIDATGT--VRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             TCCEESEEEEECTTSB--EEEEEESBCCHHHHHHHHHHHH
T ss_pred             CCCccCEEEEEeCCCe--EEEEEcCCCCHHHHHHHHHHHH
Confidence            999999998884 444  5555557888999999988875

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.96  E-value=2.6e-13  Score=108.86  Aligned_cols=66  Identities=12%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             CCC-eEEEEEeCCCChHHHHHHHHHHHHHHHC----CCcEEEEEecccc-------------------------HhHHHh
Q 022923          118 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEH-------------------------KSMCYS  167 (290)
Q Consensus       118 ~~k-~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~~-------------------------~~l~~~  167 (290)
                      .++ +++|+||++||++|+.+.|.+.++.+++    +++.++.|++++.                         ..+++.
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            466 9999999999999999999999999988    4688888888754                         368899


Q ss_pred             cCccccCceEEEe-CCC
Q 022923          168 LNVHVLPFFRFYR-GAH  183 (290)
Q Consensus       168 ~~I~~~PT~~~~~-~G~  183 (290)
                      |+|.++|++++++ +|+
T Consensus       104 ~~v~~~P~~~lid~~G~  120 (143)
T 2lus_A          104 YGITGIPALVIVKKDGT  120 (143)
Confidence            9999999999997 554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.28  E-value=1.4e-11  Score=121.04  Aligned_cols=93  Identities=14%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +++.+.+....++..++.||++||++|+.+.|.+++++..++++.+..||++++++++++|+|.++||+++  ||+  ..
T Consensus       106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~--~~  181 (521)
T 1hyu_A          106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGK--EF  181 (521)
T ss_dssp             HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTE--EE
T ss_pred             HHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCE--EE
Confidence            34555555445778899999999999999999999999999999999999999999999999999999977  775  33


Q ss_pred             eecCCccCHHHHHHHHHhh
Q 022923          188 SFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       188 ~~~~g~~~~~~l~~~L~k~  206 (290)
                      ..  |..+.++|.++|++.
T Consensus       182 ~~--G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          182 GQ--GRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EE--SCCCHHHHHHHHCCS
T ss_pred             ec--CCCCHHHHHHHHhhc
Confidence            32  778899999987654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.26  E-value=1.7e-11  Score=101.31  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=71.6

Q ss_pred             CCCeEEEEEeCCCChH-HHHHHHHHHHHHHHC------CCcEEEEEecccc----------------------------H
Q 022923          118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMN------PDVQFLQVNYEEH----------------------------K  162 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~-Ck~~~p~l~~la~~~------~~v~~~~Vd~d~~----------------------------~  162 (290)
                      .++++||+||++||++ |+...|.+.++.++|      +++.|+.|++|..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5799999999999998 999999999999887      4799999998731                            2


Q ss_pred             hHHHhcCccccC---------------ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          163 SMCYSLNVHVLP---------------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       163 ~l~~~~~I~~~P---------------T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .+++.|+|..+|               +++++ ++|+  +.....|..+.+++.+.|++++
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGL--FTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSC--EEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCe--EEEEECCCCCHHHHHHHHHHHH
Confidence            578899999888               66666 4554  5555557788999999988775

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.26  E-value=9.9e-13  Score=120.75  Aligned_cols=86  Identities=9%  Similarity=0.160  Sum_probs=64.5

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEe---c-cccHhHHHhcCccccCceEEEeCCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---Y-EEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd---~-d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ..+.+.+..    ..+|+|||+||+||+++.|.+++++++++   ++.+|   . +++++++++|+|+++||+++  ||+
T Consensus       190 ~~la~~l~~----~~vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~  260 (291)
T 3kp9_A          190 VGLAAHLRQ----IGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR  260 (291)
T ss_dssp             HHHHHHHHH----TTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE
T ss_pred             HHHHHHhCC----CCEEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE
Confidence            345555532    24799999999999999999999997764   33333   2 33789999999999999554  775


Q ss_pred             ceeeeecCCccCHHHHHHHHHhhC
Q 022923          184 GRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                        .  +. |.++.+++.++++-..
T Consensus       261 --~--~~-G~~~~~~L~~~l~~~~  279 (291)
T 3kp9_A          261 --T--YT-GVRSLEALAVASGYPL  279 (291)
T ss_dssp             --E--EE-SCCCHHHHHHHTCCCC
T ss_pred             --E--ec-CCCCHHHHHHHHCCCC
Confidence              2  33 8899999999976543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.25  E-value=1.1e-11  Score=95.65  Aligned_cols=81  Identities=14%  Similarity=0.194  Sum_probs=67.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc--ccHhHHHhcCccccCceEEEeCCCceeeeecCCccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNAT  195 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~  195 (290)
                      .+.+++++||++||++|+.+.+.++++++   ++.|..||++  ++++++++|+ .++|++  |.+|+  .. . .++.+
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~--~~-~-~~g~~   83 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQ--FL-M-MHRVN   83 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSS--EE-E-ESSCC
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCE--EE-E-ecCCC
Confidence            46678999999999999999999987753   4899999999  8899999999 999976  45776  32 2 36788


Q ss_pred             HHHHHHHHHhhCC
Q 022923          196 IKKFKDALAKHTP  208 (290)
Q Consensus       196 ~~~l~~~L~k~~~  208 (290)
                      .++|.++|++++.
T Consensus        84 ~~~l~~~l~~~~~   96 (100)
T 1wjk_A           84 TSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988763

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.23  E-value=2.3e-11  Score=99.78  Aligned_cols=88  Identities=15%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             CCCeEEEEEeCCCChH-HHHHHHHHHHHHHHC------CCcEEEEEecccc----------------------------H
Q 022923          118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMN------PDVQFLQVNYEEH----------------------------K  162 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~-Ck~~~p~l~~la~~~------~~v~~~~Vd~d~~----------------------------~  162 (290)
                      .++++||+||++||++ |+...|.+.++.+++      +++.++.|++|..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5799999999999998 999999999999876      3789999988642                            1


Q ss_pred             hHHHhcCccccC---------------ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          163 SMCYSLNVHVLP---------------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       163 ~l~~~~~I~~~P---------------T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .+++.|+|..+|               +++++ ++|+  +.....|..+.+++.+.|++++
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGE--FLDYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSC--EEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCe--EEEEeCCCCCHHHHHHHHHHHH
Confidence            478899999999               55555 4554  5555557788999999988765

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=9.1e-13  Score=108.15  Aligned_cols=87  Identities=14%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHH-HHHHCC---CcEEEEEeccccHhHHHhc----------------------C--
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQ-LAEMNP---DVQFLQVNYEEHKSMCYSL----------------------N--  169 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~-la~~~~---~v~~~~Vd~d~~~~l~~~~----------------------~--  169 (290)
                      .+++++|+||++||++|+.+.|.+.+ +.+++.   ++.++.|++++..+..++|                      +  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            57899999999999999999999998 887775   5899999988655444433                      3  


Q ss_pred             ccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          170 VHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       170 I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +.++|+++++ ++|+  +.... .+.+.+++.++|++..
T Consensus       112 ~~~~P~~~lid~~G~--i~~~~-~g~~~~~l~~~l~~l~  147 (159)
T 2ls5_A          112 DAGITRNVLIDREGK--IVKLT-RLYNEEEFASLVQQIN  147 (159)
Confidence            6779999998 4554  44443 2356667777776654

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.21  E-value=4.2e-11  Score=104.48  Aligned_cols=88  Identities=15%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             CCC-eEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEecc-----------------------------ccHhHH
Q 022923          118 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE-----------------------------EHKSMC  165 (290)
Q Consensus       118 ~~k-~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d-----------------------------~~~~l~  165 (290)
                      .++ ++||+||++||++|+.+.|.|.++.++|++  +.|+.|+++                             ....++
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            456 599999999999999999999999999864  999999983                             356789


Q ss_pred             HhcCccccCceEEEe-CCCceeeeec---------CCccCHHHHHHHHHhhC
Q 022923          166 YSLNVHVLPFFRFYR-GAHGRVCSFS---------CTNATIKKFKDALAKHT  207 (290)
Q Consensus       166 ~~~~I~~~PT~~~~~-~G~~~v~~~~---------~g~~~~~~l~~~L~k~~  207 (290)
                      +.|+|.++|++++++ +|+  +....         .+..+.++|++.|++++
T Consensus       137 ~~~~v~~~P~~~liD~~G~--i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll  186 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERR--LVYHGQFDDARPGNGKDVTGADLRAAVDAVL  186 (218)
T ss_dssp             HHHTCCEESEEEEECTTCB--EEEEECSSSCCTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHcCCCCCCeEEEECCCCc--EEEeccccccccccccccCHHHHHHHHHHHH
Confidence            999999999999994 444  43221         12345677887777765

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.20  E-value=3e-11  Score=89.03  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=60.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhcC--ccccCceEEEeCCCceeeeecCCccCH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLN--VHVLPFFRFYRGAHGRVCSFSCTNATI  196 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~--I~~~PT~~~~~~G~~~v~~~~~g~~~~  196 (290)
                      ++.||++||++|+.+.+.+++++++++++.|..+|+++++    ++.++++  +.++|++  |.+|+  ...   |   .
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~--~i~---~---~   72 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQ--HIG---G---Y   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTE--EEE---S---S
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCE--EEE---C---H
Confidence            6789999999999999999999998888999999998654    8999999  9999998  34775  321   2   2


Q ss_pred             HHHHHHHHhh
Q 022923          197 KKFKDALAKH  206 (290)
Q Consensus       197 ~~l~~~L~k~  206 (290)
                      +++.+++++.
T Consensus        73 ~~l~~~~~~~   82 (85)
T 1ego_A           73 TDFAAWVKEN   82 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5777777764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.16  E-value=8.4e-11  Score=97.15  Aligned_cols=87  Identities=11%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             CCCe-EEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc---------------------ccHhHHHhcCccc
Q 022923          118 GDKL-VVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHV  172 (290)
Q Consensus       118 ~~k~-vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d---------------------~~~~l~~~~~I~~  172 (290)
                      .++. ++|+|| ++||++|+...|.+.++.++|+  ++.|+.|++|                     ....+++.|+|.+
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence            4565 999999 9999999999999999999884  4899999887                     4567899999999


Q ss_pred             ----cCceEEEe-CCCceeeeecCC----ccCHHHHHHHHHhh
Q 022923          173 ----LPFFRFYR-GAHGRVCSFSCT----NATIKKFKDALAKH  206 (290)
Q Consensus       173 ----~PT~~~~~-~G~~~v~~~~~g----~~~~~~l~~~L~k~  206 (290)
                          +|++++++ +|+  +.....|    ....+++.+.|++.
T Consensus       107 ~~~~~P~~~lid~~G~--i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          107 FILPARITFVIDKKGI--IRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             SSSCCCEEEEECTTSB--EEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             cCcccceEEEECCCCE--EEEEEecCCCCCcCHHHHHHHHHHh
Confidence                99988885 454  5444334    23455565555544

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.15  E-value=1.2e-10  Score=98.96  Aligned_cols=89  Identities=11%  Similarity=0.049  Sum_probs=68.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc--------c---HhHH-H-----------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE--------H---KSMC-Y-----------------  166 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~--------~---~~l~-~-----------------  166 (290)
                      .++++||+||++||++|+...|.+.++.++|.  ++.|+.|++|.        .   .+++ +                 
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            57899999999999999999999999999885  49999998872        1   1222 1                 


Q ss_pred             ------------hcCccccC------ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          167 ------------SLNVHVLP------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       167 ------------~~~I~~~P------T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                                  .|+|.++|      +++++ ++|+  +.....|..+.+++.+.|++++.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGV--PVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSC--EEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCc--EEEEECCCCCHHHHHHHHHHHHh
Confidence                        24888899      66666 4554  55555577889999999988763

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.15  E-value=2.2e-11  Score=89.56  Aligned_cols=59  Identities=12%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEecc-ccHhHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d-~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.||++||++|+.+.+.++++.++++ ++.++.||.+ ++.+++++|+|.++||+++  +|+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCE
Confidence            677999999999999999999987764 3666666655 5788999999999999877  665

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.14  E-value=1.1e-10  Score=96.23  Aligned_cols=89  Identities=9%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc--------c---HhHHH-hc---------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE--------H---KSMCY-SL---------------  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~--------~---~~l~~-~~---------------  168 (290)
                      .+|++||+||++||++|+...|.+.++.++|.  ++.++.|++|.        .   ..+++ +|               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            58999999999999999999999999999885  49999998852        1   22233 32               


Q ss_pred             --------------Cc--cccC---ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          169 --------------NV--HVLP---FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       169 --------------~I--~~~P---T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                                    +|  .++|   +++++ ++|+  +.....|..+.+++.+.|++++.
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQ--VVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSC--EEEEECTTSCGGGGHHHHHHHTT
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCC--EEEeeCCCCCHHHHHHHHHHHhh
Confidence                          44  6678   76666 4554  55555577888899999988764

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.14  E-value=5.9e-11  Score=98.93  Aligned_cols=88  Identities=9%  Similarity=0.075  Sum_probs=66.2

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------cHhHH-------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------HKSMC-------------------  165 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------~~~l~-------------------  165 (290)
                      .+|++||+||++||++|+ ..|.+.++.++|.  ++.++.|++|.           ...++                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            579999999999999999 9999999999885  48999997641           11122                   


Q ss_pred             -----------HhcCccccC------ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          166 -----------YSLNVHVLP------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       166 -----------~~~~I~~~P------T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                                 +.|+|.++|      +++++ ++|+  +.....|..+.+++.+.|++++.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGK--VYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSC--EEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCC--EEEEeCCCCCHHHHHHHHHHHHH
Confidence                       247899999      76666 4554  55555577888888888888753

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.13  E-value=1.3e-10  Score=95.25  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             CCC-eEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------------------cHhHHHhcCc
Q 022923          118 GDK-LVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------HKSMCYSLNV  170 (290)
Q Consensus       118 ~~k-~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------------------~~~l~~~~~I  170 (290)
                      .++ ++||+|| ++||++|+...|.+.++.++|.  ++.++.|++|.                       +..+++.|+|
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v  113 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGV  113 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTC
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCC
Confidence            355 9999998 9999999999999999999984  59999998863                       5678999999


Q ss_pred             c----ccC--ceEEE-eCCCceeeeecCCc----cCHHHHHHHHHhh
Q 022923          171 H----VLP--FFRFY-RGAHGRVCSFSCTN----ATIKKFKDALAKH  206 (290)
Q Consensus       171 ~----~~P--T~~~~-~~G~~~v~~~~~g~----~~~~~l~~~L~k~  206 (290)
                      .    ++|  +++++ ++|+  +.....|.    .+.+++.+.|+++
T Consensus       114 ~~~~~~~p~~~~~lid~~G~--i~~~~~g~~~~~~~~~~l~~~l~~l  158 (160)
T 1xvw_A          114 FNEQAGIANRGTFVVDRSGI--IRFAEMKQPGEVRDQRLWTDALAAL  158 (160)
T ss_dssp             EETTTTEECSEEEEECTTSB--EEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             ccccCCCeeeeEEEECCCCe--EEEEEecCCCCCCCHHHHHHHHHHh
Confidence            9    999  66555 4554  44433333    2567777777654

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.13  E-value=1.1e-10  Score=98.51  Aligned_cols=88  Identities=9%  Similarity=0.066  Sum_probs=66.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------c----HhHHHh-----------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------H----KSMCYS-----------------  167 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~----~~l~~~-----------------  167 (290)
                      .+|++||+||++||++|+...|.+.++.++|+  ++.++.|++|.       .    ..++++                 
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            57999999999999999999999999999885  39999998763       1    122222                 


Q ss_pred             -------cCccccC-------ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          168 -------LNVHVLP-------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       168 -------~~I~~~P-------T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                             |.+.++|       +++++ ++|+  +.....|..+.++|.+.|++++
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGK--VVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSC--EEEEECTTSCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCC--EEEEeCCCCCHHHHHHHHHHHh
Confidence                   3366789       65555 4554  5555557788999999998865

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.12  E-value=9.4e-11  Score=100.09  Aligned_cols=89  Identities=16%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .++++||+|| ++||++|+...|.+.++.++|+  ++.|+.|++|.                         +..+++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            4789999999 9999999999999999999885  69999998874                         346788999


Q ss_pred             cc-----ccCceEEEe-CCCceeeeecCCc----cCHHHHHHHHHhhCC
Q 022923          170 VH-----VLPFFRFYR-GAHGRVCSFSCTN----ATIKKFKDALAKHTP  208 (290)
Q Consensus       170 I~-----~~PT~~~~~-~G~~~v~~~~~g~----~~~~~l~~~L~k~~~  208 (290)
                      |.     ++|++++++ +|+  +.....|.    .+.+++.+.|+++..
T Consensus       124 v~~~~g~~~P~~~lid~~G~--i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNE--IQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSB--EEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CcccCCCccceEEEEcCCCe--EEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            99     999999995 444  44433233    378999999988763

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.11  E-value=1.7e-10  Score=94.89  Aligned_cols=88  Identities=5%  Similarity=-0.002  Sum_probs=64.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------c----HhH-HHhc---------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------H----KSM-CYSL---------------  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~----~~l-~~~~---------------  168 (290)
                      .++++||+||++||++|+...|.+.++.++|.  ++.++.|++|.       .    ... .+++               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            57999999999999999999999999999885  49999998752       1    122 1222               


Q ss_pred             --------------C-----ccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          169 --------------N-----VHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       169 --------------~-----I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                                    +     |..+|++++++ +|+  +.....|..+.+++.+.|++++
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQ--PVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSC--EEEEECTTSCGGGGHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCC--EEEEcCCCCCHHHHHHHHHHHh
Confidence                          3     44468877774 444  5555557777888888887764

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.11  E-value=8.8e-11  Score=99.38  Aligned_cols=88  Identities=8%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .++++||+|| ++||++|+...|.+.++.++|+  ++.++.|++|.                         +..+++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            4799999999 9999999999999999999875  69999998874                         346888999


Q ss_pred             cc------ccCceEEEe-CCCceeeeecCCc----cCHHHHHHHHHhhC
Q 022923          170 VH------VLPFFRFYR-GAHGRVCSFSCTN----ATIKKFKDALAKHT  207 (290)
Q Consensus       170 I~------~~PT~~~~~-~G~~~v~~~~~g~----~~~~~l~~~L~k~~  207 (290)
                      |.      ++|++++++ +|+  +.....|.    .+.+++.+.|+++.
T Consensus       110 v~~~~~g~~~P~~~lid~~G~--i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGV--IQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSB--EEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCe--EEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99      999999994 554  44433233    36788888887664

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.09  E-value=1.5e-10  Score=98.98  Aligned_cols=89  Identities=11%  Similarity=0.029  Sum_probs=70.7

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .++++||+|| ++||++|+...|.+.++.++|.  ++.++.|++|.                            +..+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            5789999999 9999999999999999998874  58999998874                            346889


Q ss_pred             hcCcc-----ccCceEEEeCCCceeeeecCCc----cCHHHHHHHHHhhC
Q 022923          167 SLNVH-----VLPFFRFYRGAHGRVCSFSCTN----ATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I~-----~~PT~~~~~~G~~~v~~~~~g~----~~~~~l~~~L~k~~  207 (290)
                      .|+|.     ++|++++++.++ ++.....|.    .+.+++.+.|+++.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G-~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNM-KVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTT-EEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     999999885332 344443333    36788888888764

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.07  E-value=5.7e-10  Score=93.23  Aligned_cols=83  Identities=17%  Similarity=0.355  Sum_probs=67.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------  158 (290)
                      ..+++|+.||.+||++|+.+.|.+.++.++++++.+...++                                       
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~  100 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANE  100 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCH
Confidence            57889999999999999999999999999998877776653                                       


Q ss_pred             ------------------------------cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          159 ------------------------------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       159 ------------------------------d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                                                    +.+..++++++|.++||+++  +|+  .   ..|..+.+.|.+.|++.+
T Consensus       101 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~--~---~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          101 TGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA--L---VPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE--E---ECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE--E---eeCCCCHHHHHHHHHHHH
Confidence                                          23445778899999999987  664  2   237789999999988754

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.05  E-value=5.5e-10  Score=94.77  Aligned_cols=89  Identities=11%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccc--------cHhHH----------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE--------HKSMC----------------------  165 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~--------~~~l~----------------------  165 (290)
                      .+|+|||+||++||++|+...|.+.++.++|++  +.++.|++|.        ...+.                      
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            579999999999999999999999999999854  8999998752        11111                      


Q ss_pred             --------------HhcCccccC---ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          166 --------------YSLNVHVLP---FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       166 --------------~~~~I~~~P---T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                                    ..+++..+|   +++++ ++|+  +.....|..+.++|.+.|++++.
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~--i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGV--PVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSC--EEEEECTTCCHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCC--EEEEECCCCCHHHHHHHHHHHHh
Confidence                          112344666   77777 4444  66555578899999999999875

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.03  E-value=5e-10  Score=97.74  Aligned_cols=81  Identities=21%  Similarity=0.361  Sum_probs=62.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------  158 (290)
                      .++++|+.||++||++|+++.|.++++.+.  ++++..++.                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~  162 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  162 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence            578999999999999999999999998764  555544322                                       


Q ss_pred             -----cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          159 -----EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       159 -----d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                           +++..++++|+|+++||+ ++.||. .+    .|..+.++|.++|++.
T Consensus       163 ~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~-~~----~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          163 CDVDIADHYALGVQLGVSGTPAV-VLSNGT-LV----PGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CSCCHHHHHHHHHHHTCCSSSEE-ECTTSC-EE----ESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCccCEE-EEcCCe-Ee----cCCCCHHHHHHHHHHh
Confidence                 245678899999999999 555764 22    2667888999888765

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.02  E-value=6.3e-10  Score=93.74  Aligned_cols=87  Identities=9%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------c----HhHHHhc----------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------H----KSMCYSL----------------  168 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~----~~l~~~~----------------  168 (290)
                      .++++||+||++||++|+...|.+.++.++|.  ++.|+.|++|.       .    ..+++++                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            57999999999999999999999999999885  49999998752       1    1112221                


Q ss_pred             ---------------C-----ccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhh
Q 022923          169 ---------------N-----VHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       169 ---------------~-----I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                                     +     |..+|++++++ +|+  +.....|..+.++|.+.|+++
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC--VVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSC--EEEEECTTSCTHHHHTTSGGG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCC--EEEEeCCCCCHHHHHHHHHHh
Confidence                           3     34469988874 454  555555777888888877664

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.02  E-value=7.5e-10  Score=95.07  Aligned_cols=89  Identities=9%  Similarity=0.035  Sum_probs=70.1

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .++++||+|| ++||++|+...|.+.++.++|  .++.|+.|++|.                            ...+++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            4789999999 999999999999999999988  469999998864                            346888


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeecCC----ccCHHHHHHHHHhhC
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFSCT----NATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~~g----~~~~~~l~~~L~k~~  207 (290)
                      .|+|.      ++|++++++..+ ++.....|    +.+.+++.+.|+++.
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G-~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQ-NLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCC-EEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            99999      999988885332 34433322    356788888887653

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.01  E-value=5.4e-10  Score=97.14  Aligned_cols=42  Identities=10%  Similarity=0.059  Sum_probs=38.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d  159 (290)
                      .+++|||+|||+||++|+...|.|.++.++|.  ++.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            57999999999999999999999999999885  4899999885

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.99  E-value=9.7e-10  Score=93.40  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=69.9

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .++++||+|| ++||++|+...|.+.++.++|  .++.++.|++|.                            +..+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            5789999999 999999999999999999988  579999998763                            246888


Q ss_pred             hcCcc-----ccCceEEEe-CCCceeeeecCC----ccCHHHHHHHHHhhC
Q 022923          167 SLNVH-----VLPFFRFYR-GAHGRVCSFSCT----NATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I~-----~~PT~~~~~-~G~~~v~~~~~g----~~~~~~l~~~L~k~~  207 (290)
                      .|+|.     .+|++++++ +|+  +.....|    +.+.+++.+.|+++.
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~--i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGV--VQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSB--EEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCE--EEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            99999     999999994 444  4443323    346788888877653

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.98  E-value=1.9e-09  Score=89.12  Aligned_cols=87  Identities=14%  Similarity=0.115  Sum_probs=67.3

Q ss_pred             CCCeEEEEEeCCC-ChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCccc-
Q 022923          118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHV-  172 (290)
Q Consensus       118 ~~k~vlV~FyA~W-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~-  172 (290)
                      .+++++|+||++| |++|+...|.+.++.++|+++.++.|+.|.                       +.++++.|+|.. 
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~  122 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK  122 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBT
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccc
Confidence            4789999999999 999999999999999988789999998763                       246788899987 


Q ss_pred             -----cCceEEEe-CCCceeeeecCC-----ccCHHHHHHHHHhh
Q 022923          173 -----LPFFRFYR-GAHGRVCSFSCT-----NATIKKFKDALAKH  206 (290)
Q Consensus       173 -----~PT~~~~~-~G~~~v~~~~~g-----~~~~~~l~~~L~k~  206 (290)
                           +|++++++ +|+  +.....|     ..+.+++.+.|+++
T Consensus       123 ~~g~~~p~~~lid~~G~--i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          123 ELRLLARSVFVLDENGK--VVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             TTCSBCCEEEEECTTSC--EEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             cCCceeeEEEEEcCCCc--EEEEEecCCcCCCCCHHHHHHHHHHh
Confidence                 49888885 444  4443322     23557888887765

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.97  E-value=9.6e-10  Score=92.48  Aligned_cols=42  Identities=12%  Similarity=0.029  Sum_probs=38.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d  159 (290)
                      .+|++||+||++||++|+...|.+.++.++|++  +.++.|+++
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   80 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCN   80 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            578999999999999999999999999999864  899999765

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.97  E-value=1.5e-09  Score=94.93  Aligned_cols=88  Identities=11%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .++++||+|| ++||++|+...|.+.++.++|  .++.++.|++|.                            ...+++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            4699999999 999999999999999999988  579999998763                            346889


Q ss_pred             hcCcc------ccCceEEEe-CCCceeeeecCC----ccCHHHHHHHHHhhC
Q 022923          167 SLNVH------VLPFFRFYR-GAHGRVCSFSCT----NATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~-~G~~~v~~~~~g----~~~~~~l~~~L~k~~  207 (290)
                      .|+|.      .+|++++++ +|+  +.....|    +.+.+++.+.|+++.
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~--I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGV--IKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSB--EEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCE--EEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            99999      999999994 444  4333222    357788888888764

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.97  E-value=1.2e-09  Score=92.43  Aligned_cols=87  Identities=10%  Similarity=0.005  Sum_probs=63.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------cHhHHHhcCc--------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------HKSMCYSLNV--------------  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------~~~l~~~~~I--------------  170 (290)
                      .++++||+||++||++|+...|.+.++.++|+  ++.++.|++|.           ..++++++++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            57999999999999999999999999999885  48999998752           1223333322              


Q ss_pred             ----------------------cccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhh
Q 022923          171 ----------------------HVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       171 ----------------------~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                                            +.+|++++++ +|+  +.....|..+.+++.+.|+++
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC--VVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSC--EEEEECTTSCGGGGGGGHHHH
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCC--EEEeeCCCCCHHHHHHHHHHh
Confidence                                  2257877774 444  555555777778888877765

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.95  E-value=2.1e-09  Score=93.59  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .++++||+|| ++||++|+...|.+.++.++|  .++.++.|++|.                            +.++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            5789999999 999999999999999999988  568999988763                            345888


Q ss_pred             hcCcc-----ccCceEEEeCCCceeeeecCC----ccCHHHHHHHHHhhC
Q 022923          167 SLNVH-----VLPFFRFYRGAHGRVCSFSCT----NATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I~-----~~PT~~~~~~G~~~v~~~~~g----~~~~~~l~~~L~k~~  207 (290)
                      .|+|.     .+|++++++... ++.....+    +++.+++.+.|++..
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G-~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNG-IVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTS-BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     899988885332 34433222    356888888887653

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.92  E-value=2.6e-09  Score=91.72  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             CCCeEEEEEeCCCChH-HHHHHHHHHHHHHHC-----CCcEEEEEeccc----------------------------cHh
Q 022923          118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMN-----PDVQFLQVNYEE----------------------------HKS  163 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~-Ck~~~p~l~~la~~~-----~~v~~~~Vd~d~----------------------------~~~  163 (290)
                      .++++||+||++||++ |+...|.|.++.+++     .++.++.|++|.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            5789999999999997 999999999976654     368889888772                            135


Q ss_pred             HHHhcCcc-ccC---------------ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          164 MCYSLNVH-VLP---------------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       164 l~~~~~I~-~~P---------------T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++.|+|. ..|               +++++ ++|+  +.....|..+.+.+.+.|.+.+
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~--i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQ--FVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSC--EEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCc--EEEEeCCCCCHHHHHHHHHHHH
Confidence            77888887 444               55555 4444  6555546566666666555544

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.91  E-value=6.3e-09  Score=87.25  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             CCCeEEEEEeCCC-ChHHHHHHHHHHHHHHHCCCcEEEEEeccc----------------------cHhHHHhcCcccc-
Q 022923          118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE----------------------HKSMCYSLNVHVL-  173 (290)
Q Consensus       118 ~~k~vlV~FyA~W-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----------------------~~~l~~~~~I~~~-  173 (290)
                      .++++||+||++| |++|+...|.+.++.++ +++.|+.|+.|.                      +..+++.|+|... 
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  121 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD  121 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence            4789999999999 99999999999999988 889999998872                      2457889999887 


Q ss_pred             --------CceEEEe-CCCceeeeecCC-----ccCHHHHHHHHHhhCC
Q 022923          174 --------PFFRFYR-GAHGRVCSFSCT-----NATIKKFKDALAKHTP  208 (290)
Q Consensus       174 --------PT~~~~~-~G~~~v~~~~~g-----~~~~~~l~~~L~k~~~  208 (290)
                              |++++++ +|+  +.....|     ..+.+++++.+.+-.+
T Consensus       122 ~~~~g~~~p~~~lid~~G~--I~~~~~g~~~~~~~~~~~~l~~l~~~~~  168 (175)
T 1xvq_A          122 GPMAGLLARAIVVIGADGN--VAYTELVPEIAQEPNYEAALAALGATSG  168 (175)
T ss_dssp             STTTTSBCSEEEEECTTSB--EEEEEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred             cccCCcccceEEEECCCCe--EEEEEECCCcCCCCCHHHHHHHHHhhcC
Confidence                    8877774 454  4433321     2356666666665543

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.90  E-value=3.2e-09  Score=92.44  Aligned_cols=81  Identities=16%  Similarity=0.247  Sum_probs=63.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------  158 (290)
                      .++.+|+.|+.+||++|+++.|.++++.+.  ++++..+..                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            578899999999999999999999998763  455543322                                       


Q ss_pred             -----cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          159 -----EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       159 -----d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                           +++..++++++|+++||+++ .||+ .    ..|..+.++|.++|++.
T Consensus       163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~-~----~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE-L----IGGYLKPADLLRALEET  209 (211)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC-C----CCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE-E----ecCCCCHHHHHHHHHhc
Confidence                 23456789999999999988 6775 2    23667899999998764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.89  E-value=1.1e-09  Score=79.88  Aligned_cols=72  Identities=11%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHH---hcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~---~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      ++.||++||++|+.+.+.++++     ++.|..+|+++++++.+   ++++.++|++  |.+|+ .+     ++.+.+++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~-~~-----~g~~~~~l   69 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDL-SW-----SGFRPDMI   69 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTE-EE-----ESCCHHHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCE-EE-----ecCCHHHH
Confidence            6779999999999999998874     57888999998766554   5899999998  34664 22     34567777


Q ss_pred             HHHHHhhC
Q 022923          200 KDALAKHT  207 (290)
Q Consensus       200 ~~~L~k~~  207 (290)
                      .++|+++.
T Consensus        70 ~~~l~~~~   77 (81)
T 1h75_A           70 NRLHPAPH   77 (81)
T ss_dssp             GGGSCCC-
T ss_pred             HHHHhccc
Confidence            77766553

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.89  E-value=4.2e-09  Score=87.05  Aligned_cols=90  Identities=12%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             CCCeEEEEEeCCCCh-HHHHHHHHHHHHHHHCC----CcEEEEEeccc---c-------------------------HhH
Q 022923          118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMNP----DVQFLQVNYEE---H-------------------------KSM  164 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~---~-------------------------~~l  164 (290)
                      .++++||+||++||+ +|+...|.+.++.++|+    ++.|+.|++|.   .                         .++
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            578999999999999 99999999999988763    49999998862   1                         111


Q ss_pred             HHh----------------cCccccCceEEEeCCCceeeeecCCcc--CHHHHHHHHHhhCC
Q 022923          165 CYS----------------LNVHVLPFFRFYRGAHGRVCSFSCTNA--TIKKFKDALAKHTP  208 (290)
Q Consensus       165 ~~~----------------~~I~~~PT~~~~~~G~~~v~~~~~g~~--~~~~l~~~L~k~~~  208 (290)
                      .+.                |++.++|++++++... ++.....|..  +.+++.+.|++++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G-~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDG-KVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTS-EEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCC-eEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            222                2456788877774332 4555444554  58999999998763

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.88  E-value=6e-09  Score=91.12  Aligned_cols=88  Identities=10%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|++||+||+ +||++|+...|.|.++.++|.  ++.|+.|++|.                            +..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            57899999996 999999999999999999884  58999998873                            235778


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeecCCc----cCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFSCTN----ATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~~g~----~~~~~l~~~L~k~  206 (290)
                      .|+|.      .+|++++++... ++.....+.    ...+++.+.|+..
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G-~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNG-ILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTS-EEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            89999      899999885333 344433222    3567777776543

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.88  E-value=2.9e-08  Score=79.74  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=83.0

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      .+..|++.+++.+.+  ..++.+||-|+++||++|   .+.+.++++.++++.|+.++   +.+++++|++. .|++++|
T Consensus        22 ~~~~i~s~~e~e~fi--~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~---~~~v~~~~~v~-~~~vvlf   92 (124)
T 2l4c_A           22 EPTWLTDVPAAMEFI--AATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGIST---DSEVLTHYNIT-GNTICLF   92 (124)
T ss_dssp             CCEECCSHHHHHHHH--HTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEEC---CHHHHHHTTCC-SSCEEEE
T ss_pred             cceEcCCHHHHHHHH--hcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEEC---hHHHHHHcCCC-CCeEEEE
Confidence            345689999999988  457899999999999999   56899999999889999876   47799999999 8999999


Q ss_pred             eCCCceeeeecC---CccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSC---TNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~---g~~~~~~l~~~L~k~~  207 (290)
                      ++.......|.+   |..+.++|.+||..+.
T Consensus        93 kkfde~~~~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           93 RLVDNEQLNLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             ETTTTEEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred             EcCCCCceeecCcccCCCCHHHHHHHHHHhc
Confidence            987655566653   3579999999998763

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.86  E-value=7.5e-08  Score=84.22  Aligned_cols=120  Identities=9%  Similarity=0.112  Sum_probs=95.0

Q ss_pred             chhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc--ccHh
Q 022923           87 GKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE--EHKS  163 (290)
Q Consensus        87 ~~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d--~~~~  163 (290)
                      ..+..|......|.+.+++ .+++.+.+. ..-..+++.|+.+||.+|..+.+.+.+++++|.+ +.|+.+|++  ++..
T Consensus       101 ~~l~~fi~~~~~plv~e~t-~~n~~~~~~-~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~  178 (227)
T 4f9z_D          101 TKLSRFIEINSLHMVTEYN-PVTVIGLFN-SVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGK  178 (227)
T ss_dssp             HHHHHHHHHHCCCSEEECC-HHHHHHHHH-SSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHH
T ss_pred             HHHHHHHHHhCCCceeecC-cccHHHHhc-cCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHH
Confidence            3467888888889998886 466777663 2335566778899999999999999999999964 999999996  4778


Q ss_pred             HHHhcCcc--ccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          164 MCYSLNVH--VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       164 l~~~~~I~--~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +++.||+.  .+|+++++...+.....+..+..+.+.|.+|+++.+.
T Consensus       179 ~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          179 VISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             HHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            89999998  8999999985543334443467899999999998753

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.84  E-value=7.7e-09  Score=73.94  Aligned_cols=69  Identities=13%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHH---hcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~---~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      ++.|+++||++|+.+.+.++++     ++.|..+|+++++++.+   ++++..+|++++  +|+  ..    ++.+.+++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~--~~----~g~~~~~l   69 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE--HW----SGFRPERI   69 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE--EE----ESCCHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCe--EE----cCCCHHHH
Confidence            5779999999999999999875     57888899988776655   899999999873  664  21    34567888


Q ss_pred             HHHHH
Q 022923          200 KDALA  204 (290)
Q Consensus       200 ~~~L~  204 (290)
                      .++|+
T Consensus        70 ~~~l~   74 (75)
T 1r7h_A           70 KQLQA   74 (75)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            77763

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.81  E-value=2.1e-08  Score=82.27  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCccc-
Q 022923          118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHV-  172 (290)
Q Consensus       118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~~-  172 (290)
                      .+++++|+||+ +||++|+...|.+.++.++|.  ++.++.|++|.                     ...+++.|++.. 
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            47799999998 999999999999999998874  58888888763                     335788899987 


Q ss_pred             -----------cCceEEEeCCCceeeeecCCc---cCHHHHHHHHHhhC
Q 022923          173 -----------LPFFRFYRGAHGRVCSFSCTN---ATIKKFKDALAKHT  207 (290)
Q Consensus       173 -----------~PT~~~~~~G~~~v~~~~~g~---~~~~~l~~~L~k~~  207 (290)
                                 +|++++++..+ ++.....+.   ...+++.+.|+++.
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G-~i~~~~~~~~~~~~~~~il~~l~~l~  161 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEG-QVVQAWRKVKVAGHADAVLAALKAHA  161 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTS-CEEEEECSCCSTTHHHHHHHHHHHHC
T ss_pred             cccccccccCcceEEEEECCCC-eEEEEEcCCCcccCHHHHHHHHHHHh
Confidence                       99999985433 344332222   34567777776653

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.78  E-value=2.1e-08  Score=84.99  Aligned_cols=86  Identities=20%  Similarity=0.298  Sum_probs=65.4

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc-------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-------------------------------------  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d-------------------------------------  159 (290)
                      .++++|+.||..||++|+.+.|.+.++.+++++ +.|..+.+.                                     
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            478999999999999999999999999999975 666655431                                     


Q ss_pred             ------------------------------------ccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          160 ------------------------------------EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       160 ------------------------------------~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                                                          .+..+++++||.++|||++  ||+ .+.... |..+.+.|.+.|
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~-~~~~~~-G~~~~e~l~~~i  179 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGK-YRFDIG-SAGGPEETLKLA  179 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTT-EEEEHH-HHTSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCE-EEeccc-ccCCHHHHHHHH
Confidence                                                0122456789999999987  776 333322 567888888888


Q ss_pred             HhhC
Q 022923          204 AKHT  207 (290)
Q Consensus       204 ~k~~  207 (290)
                      +..+
T Consensus       180 ~~l~  183 (192)
T 3h93_A          180 DYLI  183 (192)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.76  E-value=3.5e-08  Score=80.95  Aligned_cols=71  Identities=10%  Similarity=0.090  Sum_probs=54.2

Q ss_pred             CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCccccC
Q 022923          119 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVLP  174 (290)
Q Consensus       119 ~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~~~P  174 (290)
                      ++++||+|| ++||++|+...|.|.++.++|.  + .++.|++|.                     +..+++.|++...|
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p  113 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP  113 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence            348999997 9999999999999999998874  4 777777652                     34578899999999


Q ss_pred             -------ceEEEeCCCceeeeecCCc
Q 022923          175 -------FFRFYRGAHGRVCSFSCTN  193 (290)
Q Consensus       175 -------T~~~~~~G~~~v~~~~~g~  193 (290)
                             ++++ ++|+  +.....|.
T Consensus       114 ~~g~~~~~~li-~~G~--i~~~~~g~  136 (159)
T 2a4v_A          114 LSGSIRSHFIF-VDGK--LKFKRVKI  136 (159)
T ss_dssp             SSCBCCEEEEE-ETTE--EEEEEESC
T ss_pred             cCCccceEEEE-cCCE--EEEEEccC
Confidence                   5666 8876  54444343

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.75  E-value=4e-08  Score=83.49  Aligned_cols=42  Identities=33%  Similarity=0.591  Sum_probs=38.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d  159 (290)
                      .++++||.||++||++|+.+.|.+.++.++++ ++.|..++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            57899999999999999999999999999997 4888888774

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.75  E-value=3.6e-08  Score=87.49  Aligned_cols=87  Identities=14%  Similarity=0.213  Sum_probs=65.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------  158 (290)
                      ..+.+|+.|+.+||++|+++.+.+.++.+. ++|+|..+++                                       
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            467789999999999999999999988776 4677765543                                       


Q ss_pred             -----------cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          159 -----------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       159 -----------d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                                 +++..++++++|+++||+++.+++ +++.. ..|..+.++|.++|++..
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~-G~~~~-~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKE-NTLQQ-AVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETT-TEEEE-EESSCCHHHHHHHTTC--
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-CCEEE-ecCCCCHHHHHHHHHHHH
Confidence                       123456789999999999998632 23322 337789999999887764

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.71  E-value=1e-07  Score=83.36  Aligned_cols=100  Identities=12%  Similarity=0.140  Sum_probs=83.9

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      ...+++++.+++++.+  ..++.+||-|+++||   ..+.+.|.++++.++++.|+...   +.+++++|+|.+ |++++
T Consensus         9 ~~~~~l~s~~~~~~~l--~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~~~~F~~t~---~~~v~~~~~v~~-p~i~l   79 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFI--AATEVAVIGFFQDLE---IPAVPILHSMVQKFPGVSFGIST---DSEVLTHYNITG-NTICL   79 (227)
T ss_dssp             CCCEECCSHHHHHHHH--HTSSEEEEEECSCSC---STHHHHHHHHTTTCTTSEEEEEC---CHHHHHHTTCCS-SEEEE
T ss_pred             CCCeeeCCHHHHHHHH--hcCCeEEEEEecCCC---chhHHHHHHHHHhCCCceEEEEC---CHHHHHHcCCCC-CeEEE
Confidence            3678899999999987  457899999999985   68889999999999889998754   678999999998 99999


Q ss_pred             EeCCCceeeeecC---CccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSC---TNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~---g~~~~~~l~~~L~k~~  207 (290)
                      |+++......|..   |..+.+.|.+||.++.
T Consensus        80 fk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~  111 (227)
T 4f9z_D           80 FRLVDNEQLNLEDEDIESIDATKLSRFIEINS  111 (227)
T ss_dssp             EETTTTEEEEECHHHHHTCCHHHHHHHHHHHC
T ss_pred             EEecCcccccccccccCCCCHHHHHHHHHHhC
Confidence            9976544555653   4689999999999986

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.71  E-value=8.9e-08  Score=79.95  Aligned_cols=91  Identities=9%  Similarity=0.135  Sum_probs=66.9

Q ss_pred             CCCeEEEEEeCCCCh-HHHHHHHHHHHHHHHC----CCcEEEEEeccc-------------------------------c
Q 022923          118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMN----PDVQFLQVNYEE-------------------------------H  161 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~-------------------------------~  161 (290)
                      .+|+++|+||++||+ .|....+.+.++.+++    .++.++.|.+|.                               .
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            489999999999997 7999999999999987    348888887651                               1


Q ss_pred             HhHHHhcC---------ccccCceEEEeCCCceeeeecCC-ccCHHHHHHHHHhhCCC
Q 022923          162 KSMCYSLN---------VHVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDALAKHTPD  209 (290)
Q Consensus       162 ~~l~~~~~---------I~~~PT~~~~~~G~~~v~~~~~g-~~~~~~l~~~L~k~~~~  209 (290)
                      ..+++.|+         +...|++++++.. +++..+..| ..+.+++.+.|++....
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~-G~i~~~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPE-LQIKDYIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTT-SBEEEEEESSSCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCC-CeEEEEEeCCCCCHHHHHHHHHHhhcc
Confidence            23555555         4456777777433 346544334 47899999999998754

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.71  E-value=3.4e-08  Score=86.63  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|++||+|| ++||++|+...|.|.++.++|  .++.++.|++|.                            ...+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            5789999999 999999999999999999887  468888887653                            124677


Q ss_pred             hcCc-----cccCceEEEeCCCceeeeecCC----ccCHHHHHHHHHhhC
Q 022923          167 SLNV-----HVLPFFRFYRGAHGRVCSFSCT----NATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I-----~~~PT~~~~~~G~~~v~~~~~g----~~~~~~l~~~L~k~~  207 (290)
                      .|+|     ..+|++++++... ++.....|    ..+.+++.+.|+++.
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G-~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNG-CVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTS-BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            8888     4789998885332 34443322    357888888887653

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.70  E-value=1.3e-08  Score=77.89  Aligned_cols=57  Identities=19%  Similarity=0.270  Sum_probs=45.0

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-------HhHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-------KSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-------~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|+++||++|+.+.+.++++...+++  |..+|++.+       ..+.+.+++.++|++  |.+|+
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~   77 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKE   77 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTE
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCE
Confidence            6669999999999999999988766655  555666654       357888999999997  34765

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.69  E-value=7.3e-08  Score=84.34  Aligned_cols=41  Identities=17%  Similarity=0.148  Sum_probs=36.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d  159 (290)
                      .+|+|||+|||+||++|+ ..|.|.++.++|.  ++.++.|+++
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            589999999999999999 8899999999885  4899999865

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.65  E-value=8.1e-08  Score=83.38  Aligned_cols=89  Identities=8%  Similarity=0.005  Sum_probs=66.4

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|++||+|| ++||++|....|.|.++.++|  .++.++.|++|.                            ...+++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            4789999999 999999999999999999887  468888887652                            124677


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeecCC----ccCHHHHHHHHHhhC
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFSCT----NATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~~g----~~~~~~l~~~L~k~~  207 (290)
                      .|+|.      .+|++++++... ++.....|    +.+.+++.+.|+.+.
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G-~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKG-ILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            88884      699998885433 34433222    257788888877653

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.64  E-value=9.4e-08  Score=81.03  Aligned_cols=89  Identities=7%  Similarity=-0.046  Sum_probs=64.8

Q ss_pred             CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .+|++||+||+ +||++|+...|.|.++.++|.  ++.++.|++|.                         +..+++.|+
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            47899999995 999999999999999988774  68888887652                         123567788


Q ss_pred             cc------ccCceEEEeCCCceeeeecCCc----cCHHHHHHHHHhhC
Q 022923          170 VH------VLPFFRFYRGAHGRVCSFSCTN----ATIKKFKDALAKHT  207 (290)
Q Consensus       170 I~------~~PT~~~~~~G~~~v~~~~~g~----~~~~~l~~~L~k~~  207 (290)
                      |.      .+|++++++... ++.....+.    .+.+++.+.|+++.
T Consensus       109 v~~~~~g~~~p~~~lID~~G-~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQG-IIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            87      379988885332 344433232    36788888877653

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.63  E-value=1.9e-07  Score=77.06  Aligned_cols=87  Identities=9%  Similarity=0.020  Sum_probs=62.7

Q ss_pred             CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCcc--
Q 022923          118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVH--  171 (290)
Q Consensus       118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~--  171 (290)
                      .+|+++|+||+ +||++|+...|.+.++.++|.++.++.|++|.                       ...+++.|++.  
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~  120 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLIN  120 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCT
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCccc
Confidence            57899999995 99999999999999999888778888887652                       23466677776  


Q ss_pred             --c--cCceEEEeCCCceeeeecCC-----ccCHHHHHHHHHh
Q 022923          172 --V--LPFFRFYRGAHGRVCSFSCT-----NATIKKFKDALAK  205 (290)
Q Consensus       172 --~--~PT~~~~~~G~~~v~~~~~g-----~~~~~~l~~~L~k  205 (290)
                        +  .|++++++... ++.....|     ..+.+++.+.|++
T Consensus       121 ~~g~~~p~~~liD~~G-~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          121 EWHLLARAVFVLDTDN-TIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTCSBCCEEEEECTTC-BEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             cCCceEEEEEEEcCCC-eEEEEEecCCcCCCCCHHHHHHHHHh
Confidence              3  38888885332 34443322     2455778777764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=2e-08  Score=80.85  Aligned_cols=66  Identities=14%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc---H----hHHHhcCccccCceEEE
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---K----SMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~---~----~l~~~~~I~~~PT~~~~  179 (290)
                      .+.+.+.+..  + .|+| |+++||++|+.+.+.|+++.     +.|..+|++.+   +    ++.+.+++..+|+++  
T Consensus        17 ~~~~~~~i~~--~-~vvv-f~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--   85 (130)
T 2cq9_A           17 VNQIQETISD--N-CVVI-FSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--   85 (130)
T ss_dssp             HHHHHHHHHH--S-SEEE-EECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--
T ss_pred             HHHHHHHHcC--C-cEEE-EEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--
Confidence            3556666632  3 3444 99999999999999999873     45566777654   3    378889999999984  


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus        86 i~G~   89 (130)
T 2cq9_A           86 VNGT   89 (130)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            3765

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.63  E-value=1e-07  Score=82.75  Aligned_cols=41  Identities=15%  Similarity=0.029  Sum_probs=36.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d  159 (290)
                      .+|+|||+|||+||++| ...|.|.++.++|.  ++.++.|+++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            58999999999999999 67899999999885  4899999864

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.62  E-value=1.3e-07  Score=78.60  Aligned_cols=87  Identities=11%  Similarity=0.069  Sum_probs=62.7

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCccc-
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHV-  172 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~-  172 (290)
                      .+++++|+|| ++||++|+...|.+.++.+++.++.++.|++|.                       ...+ +.|++.. 
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~  124 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIG  124 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBC
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEec
Confidence            5789999999 899999999999999999888778888887653                       1234 5666642 


Q ss_pred             --------cCceEEEeCCCceeeeecC-----CccCHHHHHHHHHhh
Q 022923          173 --------LPFFRFYRGAHGRVCSFSC-----TNATIKKFKDALAKH  206 (290)
Q Consensus       173 --------~PT~~~~~~G~~~v~~~~~-----g~~~~~~l~~~L~k~  206 (290)
                              +|++++++... ++.....     ...+.+++.+.|+++
T Consensus       125 ~~~~~g~~~p~~~liD~~G-~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          125 EGALKGILARAVFIIDKEG-KVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             SSTTTTSBCCEEEEECTTS-BEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             ccccCCceeeEEEEEcCCC-eEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence                    58888885332 3443332     235677888887764

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.59  E-value=1.7e-07  Score=77.45  Aligned_cols=86  Identities=13%  Similarity=0.042  Sum_probs=63.6

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCccc-
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHV-  172 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~-  172 (290)
                      .+|+++|+|| +.||++|....|.+.++.++ .++.++.|+.|.                       ...+++.|++.. 
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~  123 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVME  123 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEET
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccc
Confidence            5789999999 88999999999999999887 778888887652                       235677788875 


Q ss_pred             -----cCceEEEeCCCceeeee-c----CCccCHHHHHHHHHh
Q 022923          173 -----LPFFRFYRGAHGRVCSF-S----CTNATIKKFKDALAK  205 (290)
Q Consensus       173 -----~PT~~~~~~G~~~v~~~-~----~g~~~~~~l~~~L~k  205 (290)
                           +|++++++... ++... .    ....+.+++.+.|++
T Consensus       124 ~~g~~~p~~~liD~~G-~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          124 ELRLLARAVFVLDADN-KVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             TTTEECCEEEEECTTC-BEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             cCCceeeEEEEECCCC-eEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                 89988885332 34433 1    123567788877765

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.59  E-value=2e-07  Score=81.89  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             CCCeEEEEEe-CCCChHHH-HHHHHHHHHHHHC--CCc-EEEEEeccc----------------------cHhHHHhcCc
Q 022923          118 GDKLVVVDFF-SPGCGGCK-ALHPKICQLAEMN--PDV-QFLQVNYEE----------------------HKSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck-~~~p~l~~la~~~--~~v-~~~~Vd~d~----------------------~~~l~~~~~I  170 (290)
                      .+|++||+|| ++||++|+ ...|.+.++.++|  .++ .++.|+.|.                      +..+++.|++
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            5789999999 99999999 9999999998877  468 899998763                      2346788888


Q ss_pred             c-----------ccCceEEEeCCCceeeeecCCc---------cCHHHHHHHHHhh
Q 022923          171 H-----------VLPFFRFYRGAHGRVCSFSCTN---------ATIKKFKDALAKH  206 (290)
Q Consensus       171 ~-----------~~PT~~~~~~G~~~v~~~~~g~---------~~~~~l~~~L~k~  206 (290)
                      .           ..|+.+++++|+  +.....+.         .+.+++.+.|...
T Consensus       112 ~~~~~~~g~~~~~~p~t~li~~G~--i~~~~~~~~~~~~~~~~~~~~~il~~l~~~  165 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLVKNGV--VEKMFIEPNEPGDPFKVSDADTMLKYLAPQ  165 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEEETTE--EEEEEECCSCSSCCCSSSSHHHHHHHHCTT
T ss_pred             eeecccccCcccceeEEEEEECCE--EEEEEEeccCCCccceecCHHHHHHHhhhh
Confidence            6           357766557775  43332222         5678888877654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.58  E-value=2e-07  Score=78.46  Aligned_cols=88  Identities=14%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCccc-
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHV-  172 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~~-  172 (290)
                      .+|++||+|| ++||++|....|.|.++.++|.  ++.++.|.+|.                     ...+++.|++.. 
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~  129 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE  129 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence            4789999998 9999999999999999999874  48888887763                     235778888864 


Q ss_pred             -----------cCceEEEeCCCceeeeecCC---ccCHHHHHHHHHhh
Q 022923          173 -----------LPFFRFYRGAHGRVCSFSCT---NATIKKFKDALAKH  206 (290)
Q Consensus       173 -----------~PT~~~~~~G~~~v~~~~~g---~~~~~~l~~~L~k~  206 (290)
                                 .|++++++... ++.....+   ....+++.+.|++.
T Consensus       130 ~~~~g~~~~~~~p~~~lID~~G-~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          130 KTMYGRQVIGIERSTFLIGPTH-RIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             ECCC--CEEEECCEEEEECTTS-BEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccCcccCCcceEEEEECCCC-EEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                       58888885332 34433222   24556677766654

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.58  E-value=9e-08  Score=85.78  Aligned_cols=89  Identities=7%  Similarity=0.017  Sum_probs=66.8

Q ss_pred             CCCe-EEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------------cHhHHHh
Q 022923          118 GDKL-VVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS  167 (290)
Q Consensus       118 ~~k~-vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~  167 (290)
                      .++. ||++||++||+.|....+.+.++.++|.  ++.++.|++|.                           +..+++.
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~  111 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  111 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence            4564 5668999999999999999999998874  69999998864                           2357888


Q ss_pred             cCcc-------ccCceEEEeCCCceeeeecCC----ccCHHHHHHHHHhhC
Q 022923          168 LNVH-------VLPFFRFYRGAHGRVCSFSCT----NATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~-------~~PT~~~~~~G~~~v~~~~~g----~~~~~~l~~~L~k~~  207 (290)
                      |+|.       .+|++++++..+ ++.....+    +++.+++...|+...
T Consensus       112 ygv~~~~~g~~~~p~~fIID~dG-~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          112 LGLLHAESATHTVRGVFIVDARG-VIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HTCCCTTCSSSCCEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccccCCCcccceEEEECCCC-eEEEEEecCCcccchhHHHHHHHHHHH
Confidence            9997       899988885332 34333222    367889888887653

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.58  E-value=3.6e-08  Score=77.33  Aligned_cols=59  Identities=17%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-------hHHHhcCccccCceEEEeCCC
Q 022923          121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-------SMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-------~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ..++.|+++||++|+.+.+.++++...+++  |..+|+++++       ++.+.+++.++|++++  +|+
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~   84 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKT   84 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            357779999999999999999876433222  7788887763       7888999999998743  665

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.57  E-value=4.5e-08  Score=80.80  Aligned_cols=87  Identities=10%  Similarity=0.073  Sum_probs=56.8

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcc--
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH--  171 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~--  171 (290)
                      .+|+++|+|| ++||++|+...|.+.++.+++.  ++.++.|+.|.                     +.++++.|+|.  
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~  108 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE  108 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence            5789999999 9999999999999998888774  58888887653                     23567788874  


Q ss_pred             ---------ccCceEEEe-CCCceeeeec-----CCccCHHHHHHHHHhh
Q 022923          172 ---------VLPFFRFYR-GAHGRVCSFS-----CTNATIKKFKDALAKH  206 (290)
Q Consensus       172 ---------~~PT~~~~~-~G~~~v~~~~-----~g~~~~~~l~~~L~k~  206 (290)
                               ..|+.++++ +|+  +....     .+..+.+++.+.|+.+
T Consensus       109 ~~~~~~~~~~~p~tflID~~G~--I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          109 FPALPGYVLAKRAVFVIDKEGK--VRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             CTTSTTCEEECEEEEEECTTSB--EEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             cccCCCcceeeeeEEEECCCCE--EEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                     356666663 443  43221     2345788888888764

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.55  E-value=1.8e-07  Score=77.35  Aligned_cols=64  Identities=19%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCccc-
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHV-  172 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~-  172 (290)
                      .+|++||+|| ++||++|+...|.+.++.++|.++.++.|+.|.                       +..+++.|++.. 
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~  121 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQ  121 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEEC
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCceec
Confidence            5789999999 899999999999999999988778888887642                       245677788764 


Q ss_pred             --------cCceEEEeC
Q 022923          173 --------LPFFRFYRG  181 (290)
Q Consensus       173 --------~PT~~~~~~  181 (290)
                              .|+.++++.
T Consensus       122 ~~~~~g~~~p~~~liD~  138 (165)
T 1q98_A          122 TGPLAGLTSRAVIVLDE  138 (165)
T ss_dssp             SSTTTTSBCCEEEEECT
T ss_pred             ccccCCccceeEEEEcC
Confidence                    488888853

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.53  E-value=2.5e-07  Score=76.53  Aligned_cols=66  Identities=14%  Similarity=0.097  Sum_probs=51.6

Q ss_pred             CCCeEEEEEe-CCCChHHH-HHHHHHHHHHHHC--CCcE-EEEEeccc-----------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCK-ALHPKICQLAEMN--PDVQ-FLQVNYEE-----------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck-~~~p~l~~la~~~--~~v~-~~~Vd~d~-----------------------~~~l~~~~~  169 (290)
                      ++|+++|+|| ++||++|. ...|.+.++.++|  .++. ++.|+.|.                       +..+++.|+
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  113 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG  113 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence            5789999999 89999999 8999999998877  3677 88887652                       234677788


Q ss_pred             cc-----------ccCceEEEeCCC
Q 022923          170 VH-----------VLPFFRFYRGAH  183 (290)
Q Consensus       170 I~-----------~~PT~~~~~~G~  183 (290)
                      +.           .+|+.+++++|+
T Consensus       114 v~~~~~~~g~~~~~~p~~~vid~G~  138 (162)
T 1tp9_A          114 LELDLQEKGLGTRSRRFALLVDDLK  138 (162)
T ss_dssp             CEEEETTTTSEEEECCEEEEEETTE
T ss_pred             cccccccCCCCccceeEEEEEECCE
Confidence            76           278888886443

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.52  E-value=3.5e-07  Score=81.13  Aligned_cols=88  Identities=7%  Similarity=0.021  Sum_probs=66.4

Q ss_pred             CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|++||+||+ +||++|....|.|.++.++|.  ++.++.|++|.                            ...+++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            57899999999 999999999999999999884  58888887763                            124678


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeecC----CccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~~----g~~~~~~l~~~L~k~  206 (290)
                      .|+|.      .+|++++++... ++.....    .+.+.+++.+.|+..
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G-~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKG-VLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCC-eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            89998      689988885332 3443321    245677887777654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.50  E-value=6.4e-07  Score=76.52  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=36.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~  158 (290)
                      .++++||.||..||++|+.+.|.+.++.+++++ +.|..+++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~   64 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV   64 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence            468899999999999999999999999999874 77777664

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.49  E-value=1.8e-07  Score=77.11  Aligned_cols=66  Identities=14%  Similarity=0.259  Sum_probs=48.5

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc---H----hHHHhcCccccCceEEE
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---K----SMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~---~----~l~~~~~I~~~PT~~~~  179 (290)
                      .+.+.+.+..  + .|+| |+++||++|+.+.+.|+++.     +.|..+|++.+   +    ++.+.+++.++|+++  
T Consensus        39 ~~~~~~~i~~--~-~Vvv-f~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--  107 (146)
T 2ht9_A           39 VNQIQETISD--N-CVVI-FSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--  107 (146)
T ss_dssp             HHHHHHHHHH--C-SEEE-EECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--
T ss_pred             HHHHHHHhcC--C-CEEE-EECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--
Confidence            4566766632  3 3444 99999999999999999873     45566666654   3    378899999999983  


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus       108 i~G~  111 (146)
T 2ht9_A          108 VNGT  111 (146)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            3775

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.48  E-value=2.1e-07  Score=69.42  Aligned_cols=69  Identities=17%  Similarity=0.205  Sum_probs=52.3

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-----cc----HhHHHhcCccccCceEEEeCCCceeeeecCCc
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----EH----KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN  193 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----~~----~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~  193 (290)
                      ++.|+++||++|+++...++++.     +.+-.+|++     +.    .++.+.+++..+|++++  +|+ .+     ++
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~-~i-----~G   80 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG-----VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDK-HV-----LG   80 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTE-EE-----ES
T ss_pred             EEEEECCCChHHHHHHHHHHHcC-----CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCE-EE-----eC
Confidence            56689999999999999998873     444455655     33    66778899999999877  664 22     35


Q ss_pred             cCHHHHHHHHH
Q 022923          194 ATIKKFKDALA  204 (290)
Q Consensus       194 ~~~~~l~~~L~  204 (290)
                      .+.+++.++|+
T Consensus        81 ~~~~~l~~~l~   91 (92)
T 3ic4_A           81 YNEEKLKELIR   91 (92)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHhc
Confidence            68899998875

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.45  E-value=6.1e-07  Score=75.05  Aligned_cols=66  Identities=9%  Similarity=0.003  Sum_probs=51.1

Q ss_pred             CCCeEEEEEe-CCCChHHHH-HHHHHHHHHHHC--CCc-EEEEEeccc-----------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCKA-LHPKICQLAEMN--PDV-QFLQVNYEE-----------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~-~~p~l~~la~~~--~~v-~~~~Vd~d~-----------------------~~~l~~~~~  169 (290)
                      .+++++|+|| ++||++|+. ..|.+.++.++|  .++ .++.|+.|.                       +.++++.|+
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g  109 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD  109 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence            4678888886 999999999 999999988877  468 899887653                       234677788


Q ss_pred             cccc-----------CceEEEeCCC
Q 022923          170 VHVL-----------PFFRFYRGAH  183 (290)
Q Consensus       170 I~~~-----------PT~~~~~~G~  183 (290)
                      +...           |+.+++++|+
T Consensus       110 v~~~~~~~~g~~~~~p~t~lI~~G~  134 (167)
T 2wfc_A          110 MELDLSAVLGNVRSKRYSLVIEDGV  134 (167)
T ss_dssp             CEECCHHHHSSCEECCEEEEEETTE
T ss_pred             CccccccccCcccceEEEEEEeCCE
Confidence            7754           8766667765

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.44  E-value=2.5e-06  Score=79.06  Aligned_cols=110  Identities=13%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             hhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHh
Q 022923           89 AQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYS  167 (290)
Q Consensus        89 ~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~  167 (290)
                      +.+|..+...+.+.++++.+++++.+.. .++.++|.||++||..   ..+.|.+++..+ +++.|+.++   +.+++++
T Consensus       113 l~~~i~~~~~~~~~~l~~~~~~~~~~~~-~~~~~vv~ff~~~~~~---~~~~~~~~A~~~~~~~~f~~~~---~~~~~~~  185 (350)
T 1sji_A          113 LVEFLLDLIEDPVEIINSKLEVQAFERI-EDQIKLIGFFKSEESE---YYKAFEEAAEHFQPYIKFFATF---DKGVAKK  185 (350)
T ss_dssp             HHHHHHTTSSCSEEECCSHHHHHHHHHC-CSSCEEEEECSCTTSH---HHHHHHHHHHHTTTTSEEEEEC---CHHHHHH
T ss_pred             HHHHHHHhcCCcceeccchHHHHHHhcc-CCCcEEEEEECCCCcH---HHHHHHHHHHhhccCcEEEEEC---CHHHHHH
Confidence            4567777778889999999999998841 3567899999998755   457899999988 669998875   5679999


Q ss_pred             cCccccCceEEEeCCCceeeeecCCc-cCHHHHHHHHHhhC
Q 022923          168 LNVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~~~PT~~~~~~G~~~v~~~~~g~-~~~~~l~~~L~k~~  207 (290)
                      |+|. +|++++|+++.+....|. |. .+.++|.+||.++.
T Consensus       186 ~~v~-~p~i~~~~~~~~~~~~y~-g~~~~~~~l~~fi~~~~  224 (350)
T 1sji_A          186 LSLK-MNEVDFYEPFMDEPIAIP-DKPYTEEELVEFVKEHQ  224 (350)
T ss_dssp             HTCC-TTCEEEECTTCSSCEECS-SSSCCHHHHHHHHHHHC
T ss_pred             cCCC-CCcEEEEeCCCCCceecC-CCCCCHHHHHHHHHHcC
Confidence            9999 999999987543445565 54 89999999999875

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.42  E-value=6.1e-07  Score=69.12  Aligned_cols=65  Identities=17%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeC-----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEE
Q 022923          108 QDLVESLWHAGDKLVVVDFFS-----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRF  178 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA-----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~  178 (290)
                      +.+.+.+  . ...|+| |+.     +||++|+++.+.+.++     ++.|..+|+++++.    +.+.+++.++|++  
T Consensus         8 ~~~~~~i--~-~~~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--   76 (105)
T 2yan_A            8 ERLKVLT--N-KASVML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--   76 (105)
T ss_dssp             HHHHHHH--T-SSSEEE-EESBCSSSBCTTHHHHHHHHHHHH-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--
T ss_pred             HHHHHHh--c-cCCEEE-EEecCCCCCCCccHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--
Confidence            4555665  2 334555 666     9999999999999887     47788899988766    4556899999997  


Q ss_pred             EeCCC
Q 022923          179 YRGAH  183 (290)
Q Consensus       179 ~~~G~  183 (290)
                      |.+|+
T Consensus        77 ~i~g~   81 (105)
T 2yan_A           77 YVKGE   81 (105)
T ss_dssp             EETTE
T ss_pred             EECCE
Confidence            34775

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.40  E-value=5.7e-07  Score=66.79  Aligned_cols=55  Identities=15%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc--ccHhHHHhc-CccccCceEEEeCCC
Q 022923          122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--EHKSMCYSL-NVHVLPFFRFYRGAH  183 (290)
Q Consensus       122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--~~~~l~~~~-~I~~~PT~~~~~~G~  183 (290)
                      -++.|+++||++|+.+.+.+++.     ++.|..+|++  ...++.+.+ ++.++|+++  .+|+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~   64 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDY   64 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCE
Confidence            36779999999999999999886     4678888888  567788889 999999984  3665

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.40  E-value=1e-06  Score=75.72  Aligned_cols=66  Identities=20%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCcc--
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVH--  171 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~--  171 (290)
                      .+|+++|+|| +.||++|+...|.+.++.++|.++.++.|.+|.                       ...+++.|+|.  
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~  156 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAIT  156 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEEC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCceee
Confidence            5789999999 789999999999999999999778888887653                       23566778876  


Q ss_pred             -------ccCceEEEe-CCC
Q 022923          172 -------VLPFFRFYR-GAH  183 (290)
Q Consensus       172 -------~~PT~~~~~-~G~  183 (290)
                             .+|++++++ +|+
T Consensus       157 ~~~~~g~~~p~~~lID~~G~  176 (200)
T 3zrd_A          157 EGPLAGLTARAVVVLDGQDN  176 (200)
T ss_dssp             SSTTTTSBCCEEEEECTTSB
T ss_pred             cccCCCccccEEEEECCCCe
Confidence                   369988885 443

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.38  E-value=3.6e-07  Score=72.28  Aligned_cols=68  Identities=13%  Similarity=0.219  Sum_probs=50.3

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHH-HHHHHHHHHHCCCcEEEEEeccccH-------hHHHhcCccccCceEEE
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKAL-HPKICQLAEMNPDVQFLQVNYEEHK-------SMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~-~p~l~~la~~~~~v~~~~Vd~d~~~-------~l~~~~~I~~~PT~~~~  179 (290)
                      +.+.+.+..  .+  ++.|+++||++|+.+ .+.++++.  ..++.|..+|++.++       ++.+.+++.++|++  |
T Consensus        16 ~~~~~~i~~--~~--Vvvf~~~~Cp~C~~alk~~L~~~~--~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--f   87 (118)
T 3c1r_A           16 KHVKDLIAE--NE--IFVASKTYCPYCHAALNTLFEKLK--VPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--Y   87 (118)
T ss_dssp             HHHHHHHHH--SS--EEEEECSSCHHHHHHHHHHHTTSC--CCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--E
T ss_pred             HHHHHHHcc--Cc--EEEEEcCCCcCHHHHHHHHHHHcC--CCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--E
Confidence            456666632  23  556999999999999 88877653  123788888888653       58889999999986  4


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus        88 i~g~   91 (118)
T 3c1r_A           88 INGK   91 (118)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            5776

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.37  E-value=6.5e-07  Score=80.22  Aligned_cols=88  Identities=8%  Similarity=0.010  Sum_probs=65.5

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|++||+|| ++||++|....|.|.++.++|.  ++.++.|++|.                            ...+++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            5789999999 9999999999999999999884  58888887763                            124677


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeecC----CccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~~----g~~~~~~l~~~L~k~  206 (290)
                      .|+|.      .+|++++++... ++.....    .+++.+++.+.|+..
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G-~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKG-ILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTS-BEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            88886      589888885332 3443322    246778888777654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.36  E-value=1.1e-07  Score=79.25  Aligned_cols=88  Identities=10%  Similarity=0.043  Sum_probs=63.3

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcc--
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH--  171 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~--  171 (290)
                      ++|+++|+|| ++||++|....|.+.++.++|.  ++.++.|+.|.                     +.++++.|||.  
T Consensus        32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~  111 (164)
T 4gqc_A           32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE  111 (164)
T ss_dssp             TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCccc
Confidence            5788999998 9999999999998888888774  58888887653                     34577888874  


Q ss_pred             --------ccCceEEEe-CCCceeeeec-----CCccCHHHHHHHHHhhC
Q 022923          172 --------VLPFFRFYR-GAHGRVCSFS-----CTNATIKKFKDALAKHT  207 (290)
Q Consensus       172 --------~~PT~~~~~-~G~~~v~~~~-----~g~~~~~~l~~~L~k~~  207 (290)
                              ..|+.++++ +|+  +....     .+..+.+++.+.|++.+
T Consensus       112 ~~~~~~~~~~p~tflID~~G~--I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A          112 DLKGLKMVAKRAVFIVKPDGT--VAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             EETTEEEEECCEEEEECTTSB--EEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             ccccCcCCeeeEEEEECCCCE--EEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence                    367776664 443  43221     13357888888887764

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.34  E-value=1.2e-06  Score=74.57  Aligned_cols=66  Identities=9%  Similarity=0.088  Sum_probs=48.6

Q ss_pred             CCCe-EEEEEeCCCChHHHH-HHHHHHHHHHHC--CCcE-EEEEeccc-----------------------cHhHHHhcC
Q 022923          118 GDKL-VVVDFFSPGCGGCKA-LHPKICQLAEMN--PDVQ-FLQVNYEE-----------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~-vlV~FyA~WC~~Ck~-~~p~l~~la~~~--~~v~-~~~Vd~d~-----------------------~~~l~~~~~  169 (290)
                      .+++ ||++||++||++|+. ..|.+.++.++|  .++. ++.|+.|.                       +..+++.|+
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yG  134 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIG  134 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcC
Confidence            3564 555667999999999 799999999887  3577 88888763                       234677888


Q ss_pred             ccc-----------cCceEEEeCCC
Q 022923          170 VHV-----------LPFFRFYRGAH  183 (290)
Q Consensus       170 I~~-----------~PT~~~~~~G~  183 (290)
                      |..           .|+.+++++|+
T Consensus       135 v~~~~~~~g~g~~~~r~tfiIddG~  159 (184)
T 3uma_A          135 MEIDLSAGTLGIRSKRYSMLVEDGV  159 (184)
T ss_dssp             CEEEEGGGTCEEEECCEEEEEETTE
T ss_pred             CceeccccCCcccceeEEEEECCCE
Confidence            863           46666667665

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.34  E-value=3.2e-06  Score=79.15  Aligned_cols=111  Identities=10%  Similarity=0.116  Sum_probs=88.1

Q ss_pred             hhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHh
Q 022923           89 AQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS  167 (290)
Q Consensus        89 ~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~  167 (290)
                      +..|..+...+.+..+++.+++.+.+.. .++.++|-||++||.   ...+.|.+++..+. ++.|+.++   +..++++
T Consensus       115 i~~~i~~~~~~~v~~i~~~~~~~~~~~~-~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~  187 (367)
T 3us3_A          115 LVEFLLDVLEDPVELIEGERELQAFENI-EDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATF---DSKVAKK  187 (367)
T ss_dssp             HHHHHHHHHSCSEEECCSHHHHHHHHHC-CSSCEEEEECSCTTC---HHHHHHHHHHHHHTTTSCEEEEC---CHHHHHH
T ss_pred             HHHHHHHhcCCCcEEcCCHHHHHHHhcc-CCCcEEEEEECCCCc---hHHHHHHHHHHhhcCCcEEEEEC---CHHHHHH
Confidence            4566666677889999999999998841 468899999999876   45678888888874 68998876   4678999


Q ss_pred             cCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          168 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |+|.. |++++|+++.+....|.++..+.+.|.+||..+.
T Consensus       188 ~~v~~-p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~  226 (367)
T 3us3_A          188 LTLKL-NEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR  226 (367)
T ss_dssp             HTCCT-TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTC
T ss_pred             cCCCC-CeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcC
Confidence            99995 9999998865445666633589999999999875

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.33  E-value=2.9e-06  Score=70.41  Aligned_cols=87  Identities=17%  Similarity=0.282  Sum_probs=65.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc--c----------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE--E----------------------------------  160 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d--~----------------------------------  160 (290)
                      .++++||.|+.-.|++|+++.+.+.++.+++++ +.+..+...  .                                  
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~   99 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   99 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999864 555544321  0                                  


Q ss_pred             ---------------------------------------cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHH
Q 022923          161 ---------------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKD  201 (290)
Q Consensus       161 ---------------------------------------~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~  201 (290)
                                                             +..+++++||+++|||++  ||+ .++... +..+.++|.+
T Consensus       100 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGk-y~v~~~-~~~s~e~~~~  175 (184)
T 4dvc_A          100 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNR-YLVQGQ-SAKSLDEYFD  175 (184)
T ss_dssp             CCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTT-EEECGG-GCSSHHHHHH
T ss_pred             hhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCE-EeeCCc-CCCCHHHHHH
Confidence                                                   123567889999999877  886 333322 4578899999


Q ss_pred             HHHhhCC
Q 022923          202 ALAKHTP  208 (290)
Q Consensus       202 ~L~k~~~  208 (290)
                      .|+.++.
T Consensus       176 ~i~~Ll~  182 (184)
T 4dvc_A          176 LVNYLLT  182 (184)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9887753

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.30  E-value=1.1e-06  Score=74.40  Aligned_cols=40  Identities=23%  Similarity=0.459  Sum_probs=34.2

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEe
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVN  157 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd  157 (290)
                      .++++|++||..||++|+.+.|.+.++.+++++ +.|..+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p   61 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH   61 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEE
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEec
Confidence            478899999999999999999999999999864 6665554

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.28  E-value=2.9e-06  Score=70.46  Aligned_cols=41  Identities=12%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHC--C-CcEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--P-DVQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~-~v~~~~Vd~  158 (290)
                      ..+.+|+.|+..||++|+.+.+.+.++.++|  + +|+|...++
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            4678899999999999999999999888887  3 566665543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.27  E-value=1.1e-06  Score=72.44  Aligned_cols=81  Identities=20%  Similarity=0.326  Sum_probs=62.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------  158 (290)
                      ..+.+|+.|..++|++|+++.+.+.++    +++++..++.                                       
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~   88 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG   88 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence            468899999999999999999998654    5655554431                                       


Q ss_pred             -------cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          159 -------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       159 -------d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                             +++..++++++|+++|||++ .||+ .+    .|..+.++|.+.|++...
T Consensus        89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~-~i----~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGR-TQ----SGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC-EE----ESCCCTTHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE-Ee----eCCCCHHHHHHHHHHHHH
Confidence                   12456788999999999998 5675 22    267788999999988763

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.27  E-value=1.7e-06  Score=72.91  Aligned_cols=86  Identities=15%  Similarity=0.108  Sum_probs=56.3

Q ss_pred             CCCeEEEEE-eCCCChHHH-HHHHHHHHHHHHCC--CcEEEE-Eeccc-----------------------cHhHHHhcC
Q 022923          118 GDKLVVVDF-FSPGCGGCK-ALHPKICQLAEMNP--DVQFLQ-VNYEE-----------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~F-yA~WC~~Ck-~~~p~l~~la~~~~--~v~~~~-Vd~d~-----------------------~~~l~~~~~  169 (290)
                      .+++++|+| |++||++|+ ...|.|.++.++|.  ++.++. |..|.                       +.++++.|+
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yG  121 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETD  121 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHT
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhC
Confidence            466665555 599999999 58999999988873  476664 66542                       235778888


Q ss_pred             cc-------------ccCceEEEeCCCceeeeecC----CccCHHHHHHHHHh
Q 022923          170 VH-------------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAK  205 (290)
Q Consensus       170 I~-------------~~PT~~~~~~G~~~v~~~~~----g~~~~~~l~~~L~k  205 (290)
                      |.             ..|+.+++++|+  +.....    .+++..+..+.|++
T Consensus       122 v~~~~~~~~~~g~~~~~r~tfvIDdG~--I~~~~v~~~~~g~~~~~~~~vl~~  172 (173)
T 3mng_A          122 LLLDDSLVSIFGNRRLKRFSMVVQDGI--VKALNVEPDGTGLTCSLAPNIISQ  172 (173)
T ss_dssp             CBCCSTTHHHHSSCCBCCEEEEEETTE--EEEEEECTTSSCSSTTSHHHHHHH
T ss_pred             CCcccccccccCCcceEEEEEEEECCE--EEEEEEeCCCCCcchHHHHHHHHh
Confidence            76             348888887554  433221    24565666555543

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.26  E-value=2.6e-06  Score=61.62  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|+++||++|+.+.+.+++.     ++.|..+|+++++    ++.+.+++..+|+++  .+|+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~   60 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTE
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence            5679999999999999999876     4667777777643    356788999999984  3665

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.25  E-value=3.7e-07  Score=78.70  Aligned_cols=44  Identities=18%  Similarity=0.282  Sum_probs=39.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEEecccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEEH  161 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~d~~  161 (290)
                      .++++||+||+.||+||+.+.|.+   +++.++++ +++|.++|++.+
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            367899999999999999999999   99999996 599999999865

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.25  E-value=2.1e-06  Score=73.05  Aligned_cols=41  Identities=24%  Similarity=0.450  Sum_probs=34.7

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEEecc
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYE  159 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~d  159 (290)
                      ++++||.||+.||++|+.+.|.+   .++.++++ +++|..+++.
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   58 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS   58 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence            57899999999999999999986   68888886 5888777653

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.25  E-value=2e-06  Score=65.91  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-----HhHH----HhcCccccCceEEEeCCCceeeeecC
Q 022923          121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----KSMC----YSLNVHVLPFFRFYRGAHGRVCSFSC  191 (290)
Q Consensus       121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----~~l~----~~~~I~~~PT~~~~~~G~~~v~~~~~  191 (290)
                      .-++.|+++||++|+++.+.++++     ++.+-.+|++..     .++.    +.+++.++|++++  +|+ +..    
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~-----~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~-~~i----   89 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDL-----GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE-KAI----   89 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHH-----TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT-EEE----
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc-----CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC-EEE----
Confidence            346669999999999999999887     344555666531     2332    3468999999876  442 222    


Q ss_pred             CccCHHHHHHHH
Q 022923          192 TNATIKKFKDAL  203 (290)
Q Consensus       192 g~~~~~~l~~~L  203 (290)
                      |+.+.++|.++|
T Consensus        90 gg~~~~~l~~~L  101 (103)
T 3nzn_A           90 VGFKEKEIRESL  101 (103)
T ss_dssp             ESCCHHHHHHHT
T ss_pred             EcCCHHHHHHHh
Confidence            567788887765

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.23  E-value=7.2e-06  Score=68.39  Aligned_cols=42  Identities=29%  Similarity=0.568  Sum_probs=34.9

Q ss_pred             CCCeEEEEEeCCCCh-HHHHHHHHHHHHHHHC----CCcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMN----PDVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~~~----~~v~~~~Vd~d  159 (290)
                      .+|++||+||.+||+ .|....+.+.++.+.+    .++.++.|.+|
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            589999999999996 7999999888877654    35888888765

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.21  E-value=2.1e-06  Score=65.33  Aligned_cols=74  Identities=18%  Similarity=0.318  Sum_probs=56.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc-----CccccCceEEEeCCCceeeeecCCccCHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL-----NVHVLPFFRFYRGAHGRVCSFSCTNATIK  197 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~-----~I~~~PT~~~~~~G~~~v~~~~~g~~~~~  197 (290)
                      |+.|..+||++|++....|++.     ++.|-.+|++++++..+.+     |.+.+|++++ .||+  +.    .+.+.+
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~~-----gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~--~l----~~~~~~   73 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTAN-----RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGS--TL----TNPSAD   73 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSC--EE----ESCCHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHhc-----CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCE--EE----eCCCHH
Confidence            6669999999999999888764     6888899998877654432     7889998755 4665  22    356788


Q ss_pred             HHHHHHHhhCC
Q 022923          198 KFKDALAKHTP  208 (290)
Q Consensus       198 ~l~~~L~k~~~  208 (290)
                      ++.++|.+..+
T Consensus        74 el~~~L~el~g   84 (92)
T 2lqo_A           74 EVKAKLVKIAG   84 (92)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999988754

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.20  E-value=9.9e-06  Score=68.09  Aligned_cols=41  Identities=27%  Similarity=0.460  Sum_probs=34.2

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~  158 (290)
                      ..+.+|+.||..||++|+.+.+.+.++.++++ +|.|..+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            35778999999999999999999999999886 466655543

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.20  E-value=2.9e-06  Score=65.08  Aligned_cols=58  Identities=10%  Similarity=0.103  Sum_probs=45.1

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHh----c-CccccCceEEEeCCC
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----L-NVHVLPFFRFYRGAH  183 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~----~-~I~~~PT~~~~~~G~  183 (290)
                      ++.-++.|+++||++|++....|+++     ++.|..+|++.++++.+.    . ++..+|++  |.+|+
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~-----~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~   76 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK-----GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQ   76 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH-----TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC-----CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCE
Confidence            44456779999999999999999987     467778888877655444    3 89999987  44775

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.20  E-value=7.3e-06  Score=71.80  Aligned_cols=86  Identities=7%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecccc-------------------------------HhHHHh
Q 022923          121 LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEH-------------------------------KSMCYS  167 (290)
Q Consensus       121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~-------------------------------~~l~~~  167 (290)
                      .||++||++||++|....+.+.++.++|.  ++.++.|.+|..                               .++++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            56667789999999999999999998874  588888877631                               235677


Q ss_pred             cCcc------------ccCceEEEeCCCceeeeecC----CccCHHHHHHHHHhhC
Q 022923          168 LNVH------------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~------------~~PT~~~~~~G~~~v~~~~~----g~~~~~~l~~~L~k~~  207 (290)
                      |++.            .+|++++++..+ ++.....    .+++.+++.+.|+.+.
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G-~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDK-KLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTS-BEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            8874            378888885433 3443322    2467888888887653

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.17  E-value=4.1e-06  Score=65.06  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=44.8

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----Hh----HHHhcCccccCceEEE
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KS----MCYSLNVHVLPFFRFY  179 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~----l~~~~~I~~~PT~~~~  179 (290)
                      +.+.+.+.  .++  ++.|+++||++|++..+.|+++     ++.|..+|++..    .+    +.+.+++..+|++  |
T Consensus        10 ~~~~~~i~--~~~--v~vy~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--f   78 (113)
T 3rhb_A           10 ESIRKTVT--ENT--VVIYSKTWCSYCTEVKTLFKRL-----GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--F   78 (113)
T ss_dssp             HHHHHHHH--HSS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--E
T ss_pred             HHHHHHHh--cCC--EEEEECCCChhHHHHHHHHHHc-----CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--E
Confidence            34444542  233  5669999999999999999876     445556666542    22    5556799999998  4


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus        79 i~g~   82 (113)
T 3rhb_A           79 VCGK   82 (113)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            4775

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.16  E-value=3.2e-06  Score=62.01  Aligned_cols=74  Identities=9%  Similarity=0.009  Sum_probs=51.4

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCc-----cccCceEEEeCCCceeeeecC
Q 022923          121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNV-----HVLPFFRFYRGAHGRVCSFSC  191 (290)
Q Consensus       121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I-----~~~PT~~~~~~G~~~v~~~~~  191 (290)
                      ..++.|+++||++|++....+.++.   -++.+..||.+++    .++.+.++.     ..+|++++  +|+  ...   
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~---i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~--~i~---   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN---IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDE--HIG---   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT---CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTE--EEE---
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC---CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCE--EEe---
Confidence            3477799999999999998887653   2356666676554    457778888     99999854  665  221   


Q ss_pred             CccCHHHHHHHHHhhC
Q 022923          192 TNATIKKFKDALAKHT  207 (290)
Q Consensus       192 g~~~~~~l~~~L~k~~  207 (290)
                         ..+++.+++++..
T Consensus        74 ---g~~~i~~~~~~~~   86 (89)
T 3msz_A           74 ---GFTELKANADKIL   86 (89)
T ss_dssp             ---SHHHHHHTHHHHT
T ss_pred             ---ChHHHHHHHHHHh
Confidence               2456666666554

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.15  E-value=7.8e-06  Score=72.25  Aligned_cols=88  Identities=8%  Similarity=0.013  Sum_probs=63.5

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc-----------------------------cHhHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE-----------------------------HKSMC  165 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~-----------------------------~~~l~  165 (290)
                      +++.+||+|| ++||+.|....+.+.++.++|  .++.++.|.+|.                             ..+++
T Consensus        28 Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va  107 (233)
T 2v2g_A           28 GNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELA  107 (233)
T ss_dssp             CSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHH
Confidence            3448999998 999999999999999998877  358888887653                             12356


Q ss_pred             HhcCcc------------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          166 YSLNVH------------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       166 ~~~~I~------------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      +.|++.            .+|++++++..+ ++....    ..+++.+++.+.|+.+
T Consensus       108 ~~ygv~~~~~~~~~g~~~~~p~~fiID~~G-~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          108 VKLGMVDPDERTSTGMPLTCRAVFIIGPDK-KLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             HHTTCEEEEEECTTCCEEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCcCcccccCCCcccccceEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            777875            578888885433 343332    1246788888888765

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.13  E-value=2.1e-05  Score=69.55  Aligned_cols=101  Identities=14%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             CCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCc
Q 022923           97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ..|.+.+|++.+++.+.+  ..++.++|-|+.+||   ....+.|.+++..+ +++.|+.+.   +.+++++|++.. |+
T Consensus         4 ~gP~v~~l~s~~~~~~~l--~~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~   74 (252)
T 2h8l_A            4 GSPASVPLRTEEEFKKFI--SDKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EG   74 (252)
T ss_dssp             --CCEEECCSHHHHHHHH--TSSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EE
T ss_pred             CCCCceeecCHHHHHHHh--hcCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-Cc
Confidence            467899999999999888  456788999999984   55677899999998 679998874   577999999997 99


Q ss_pred             eEEEeCCC------ceeeee-cCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAH------GRVCSF-SCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~------~~v~~~-~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|+++.      +....| . |..+.++|.+||..+.
T Consensus        75 i~~fk~~~~~~kf~e~~~~y~~-g~~~~~~l~~fi~~~~  112 (252)
T 2h8l_A           75 IILFRPSHLTNKFEDKTVAYTE-QKMTSGKIKKFIQENI  112 (252)
T ss_dssp             EEEECCGGGCCTTSCSEEECCC-SSCCHHHHHHHHHHHS
T ss_pred             EEEEcchhhcccccccccccCC-CCcCHHHHHHHHHhcc
Confidence            99998641      123455 4 6789999999999875

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.13  E-value=3.7e-06  Score=62.55  Aligned_cols=55  Identities=16%  Similarity=0.344  Sum_probs=43.1

Q ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCC
Q 022923          122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~  183 (290)
                      .++.|+++||++|+++.+.+++.     ++.|..+|+++++.    +.+.+++..+|++  |.+|+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~   65 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSV   65 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            36779999999999999988875     47778888886654    4557899999965  44765

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.12  E-value=5.6e-06  Score=72.34  Aligned_cols=85  Identities=7%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHHhcCc
Q 022923          121 LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCYSLNV  170 (290)
Q Consensus       121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~~~~I  170 (290)
                      .||+.||++||+.|....+.+.++.++|.  ++.++.|.+|.                            +..+++.|++
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            45556689999999999999999998874  58888887763                            1246777887


Q ss_pred             c------------ccCceEEEeCCCceeeeecC----CccCHHHHHHHHHhh
Q 022923          171 H------------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH  206 (290)
Q Consensus       171 ~------------~~PT~~~~~~G~~~v~~~~~----g~~~~~~l~~~L~k~  206 (290)
                      .            .+|++++++..+ ++.....    .+++.+++.+.|+.+
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G-~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEK-KIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            3            478888885433 3433321    357888888888765

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=5.5e-05  Score=64.25  Aligned_cols=99  Identities=10%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             HHHHHHHh------cCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHC-CCcEEEEEeccccH---------------h
Q 022923          109 DLVESLWH------AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMN-PDVQFLQVNYEEHK---------------S  163 (290)
Q Consensus       109 ~f~~~l~~------~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~-~~v~~~~Vd~d~~~---------------~  163 (290)
                      .|.+.+..      ...|+++||++++||..|..+...+   +++.+.. .++.+...|++...               .
T Consensus        39 s~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~  118 (178)
T 2ec4_A           39 SLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSV  118 (178)
T ss_dssp             CHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHH
Confidence            45555543      3699999999999999999987432   1233222 26889999988654               3


Q ss_pred             HHH---hcCccccCceEEEeCC--CceeeeecCCccCHHHHHHHHHhhC
Q 022923          164 MCY---SLNVHVLPFFRFYRGA--HGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       164 l~~---~~~I~~~PT~~~~~~G--~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++.   .|++.++|++.++...  ...+.....|..++++|.+.|.+..
T Consensus       119 ~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          119 VAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             HHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            443   3899999999998532  2235555568899999988886553

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.05  E-value=3.7e-06  Score=70.33  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=35.0

Q ss_pred             CeEEEEEeCCCChHHHHH-HHHHHHHHHHC--CCcE-EEEEeccc
Q 022923          120 KLVVVDFFSPGCGGCKAL-HPKICQLAEMN--PDVQ-FLQVNYEE  160 (290)
Q Consensus       120 k~vlV~FyA~WC~~Ck~~-~p~l~~la~~~--~~v~-~~~Vd~d~  160 (290)
                      +.||++||++||++|+.. .|.|.++.++|  .++. ++.|+.+.
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~   89 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAIND   89 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSC
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            577889999999999999 99999988877  4688 88888763

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.02  E-value=2.5e-05  Score=69.11  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             CCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCc
Q 022923           97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ..|.+.+|++.+++++.+.. .++.++|-|+.++|   ....+.|.++++.+ +++.|+.+.   +.+++++|++.. |+
T Consensus         4 ~gP~v~~l~s~~~~~~~~~~-~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~---~~~v~~~~~v~~-p~   75 (250)
T 3ec3_A            4 GSPPSKEILTLKQVQEFLKD-GDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTF---STEIAKFLKVSL-GK   75 (250)
T ss_dssp             -CCSSEECCCHHHHHHHHHH-CSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEEC---CHHHHHHHTCCS-SE
T ss_pred             CCCCceecCCHHHHHHHHhc-CCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEEC---cHHHHHHcCCCC-Ce
Confidence            46789999999999987732 26789999999985   56778899999887 679998864   578899999988 99


Q ss_pred             eEEEeCC------CceeeeecC-CccCHHHHHHHHHhhC
Q 022923          176 FRFYRGA------HGRVCSFSC-TNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G------~~~v~~~~~-g~~~~~~l~~~L~k~~  207 (290)
                      +++|+.+      ......|.+ |..+.++|.+||..+.
T Consensus        76 ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~  114 (250)
T 3ec3_A           76 LVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHA  114 (250)
T ss_dssp             EEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcC
Confidence            9999853      112345553 4689999999999875

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.00  E-value=5.1e-06  Score=65.03  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc--c-----HhHHHhcCccccCceEEE
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE--H-----KSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~--~-----~~l~~~~~I~~~PT~~~~  179 (290)
                      .+.+.+.+.  .++  ++.|+.+||++|++....|.++     ++.|..+|++.  +     ..+.+..+...+|++++ 
T Consensus         7 ~~~~~~~i~--~~~--v~vy~~~~Cp~C~~ak~~L~~~-----~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi-   76 (114)
T 3h8q_A            7 RRHLVGLIE--RSR--VVIFSKSYCPHSTRVKELFSSL-----GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV-   76 (114)
T ss_dssp             HHHHHHHHH--HCS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE-
T ss_pred             HHHHHHHhc--cCC--EEEEEcCCCCcHHHHHHHHHHc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE-
Confidence            456666663  234  3349999999999999999876     45566667664  2     23556778889998855 


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                       +|+
T Consensus        77 -~g~   79 (114)
T 3h8q_A           77 -NKV   79 (114)
T ss_dssp             -TTE
T ss_pred             -CCE
Confidence             765

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.96  E-value=1.8e-05  Score=67.59  Aligned_cols=41  Identities=17%  Similarity=0.332  Sum_probs=34.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~  158 (290)
                      .++++||.|+..||++|+++.|.+   .++.++++ +++|..++.
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~   64 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHV   64 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEEC
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEec
Confidence            357899999999999999999987   69999997 477766653

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=97.93  E-value=2.9e-05  Score=68.36  Aligned_cols=85  Identities=6%  Similarity=0.007  Sum_probs=61.7

Q ss_pred             CCCeEEEEEeCCC-ChHHH-----HHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhc
Q 022923          118 GDKLVVVDFFSPG-CGGCK-----ALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSL  168 (290)
Q Consensus       118 ~~k~vlV~FyA~W-C~~Ck-----~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~  168 (290)
                      .++++||+||+.| |++|.     ...+.|.++   |.++.++.|+.|.                       +..+++.|
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~y  123 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRY  123 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHT
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHh
Confidence            4789999999998 99999     777777766   6778888887652                       24678889


Q ss_pred             Cccc---------cCceEEEe-CCCceeeee-c----CCccCHHHHHHHHHhhC
Q 022923          169 NVHV---------LPFFRFYR-GAHGRVCSF-S----CTNATIKKFKDALAKHT  207 (290)
Q Consensus       169 ~I~~---------~PT~~~~~-~G~~~v~~~-~----~g~~~~~~l~~~L~k~~  207 (290)
                      +|..         .|+.++++ +|+  +... .    .+..+.+++.+.|++..
T Consensus       124 Gv~~~~~~~~G~~~p~tfvID~dG~--I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          124 GVLITEYPLSGYTSPAIILADAANV--VHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             TCBCCSTTSTTCBCCEEEEECTTCB--EEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             CCccccccccCCccCEEEEEcCCCE--EEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence            9875         78888885 554  3322 1    23467888888887664

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.93  E-value=2.1e-05  Score=60.91  Aligned_cols=66  Identities=15%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             hHHHHHHHhcCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEE
Q 022923          108 QDLVESLWHAGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFY  179 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~  179 (290)
                      +.+.+.+  ..+ .|+|++.+    +||++|++....|.++     ++.|..+|++++++    +.+.++...+|++  |
T Consensus         6 ~~~~~~i--~~~-~vvvy~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--f   75 (109)
T 1wik_A            6 SGLKVLT--NKA-SVMLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--Y   75 (109)
T ss_dssp             CCHHHHH--TTS-SEEEEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--E
T ss_pred             HHHHHHh--ccC-CEEEEEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE--E
Confidence            4566666  233 35554443    9999999999999875     68899999988764    4455688889974  5


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus        76 i~g~   79 (109)
T 1wik_A           76 VRGD   79 (109)
T ss_dssp             CSSS
T ss_pred             ECCE
Confidence            5776

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.85  E-value=9.2e-06  Score=65.24  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=48.1

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHH-HHHHHHHHHHCCCcEEEEEecccc-------HhHHHhcCccccCceEE
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKAL-HPKICQLAEMNPDVQFLQVNYEEH-------KSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~-~p~l~~la~~~~~v~~~~Vd~d~~-------~~l~~~~~I~~~PT~~~  178 (290)
                      .+.+.+.+..  .+  ++.|+.+||++|++. .+.+.++...  ++.+..+|++.+       .++.+.+++..+|++  
T Consensus        27 ~~~v~~~i~~--~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--   98 (129)
T 3ctg_A           27 VAHVKDLIGQ--KE--VFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--   98 (129)
T ss_dssp             HHHHHHHHHH--SS--EEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--
T ss_pred             HHHHHHHHcC--CC--EEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--
Confidence            3566666643  33  567899999999999 8888765421  255566666543       367888999999995  


Q ss_pred             EeCCC
Q 022923          179 YRGAH  183 (290)
Q Consensus       179 ~~~G~  183 (290)
                      |.+|+
T Consensus        99 fi~g~  103 (129)
T 3ctg_A           99 YINGK  103 (129)
T ss_dssp             EETTE
T ss_pred             EECCE
Confidence            44775

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.68  E-value=0.00022  Score=66.68  Aligned_cols=116  Identities=11%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             hhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCCh-HHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHH
Q 022923           88 KAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCG-GCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMC  165 (290)
Q Consensus        88 ~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~  165 (290)
                      .+.+|......|.+.+++. +++.+.+  ..+.+++|.|+.++|. .|..+...+.+++.++. .+.|+.+|+++...++
T Consensus       208 ~l~~fi~~~~~p~v~elt~-~~~~~~~--~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~  284 (382)
T 2r2j_A          208 VTYNWIQDKCVPLVREITF-ENGEELT--EEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPL  284 (382)
T ss_dssp             HHHHHHHHHHSCSSEECCH-HHHHHHH--TTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHH
T ss_pred             HHHHHHHhcccCceEecCh-hhHHHHh--cCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHH
Confidence            3556777767778887766 4566655  4678899999999984 45566666666665554 5999999999999999


Q ss_pred             HhcCcc--ccCceEEEeCCCceeeeec--CCccCHHHHHHHHHhhCC
Q 022923          166 YSLNVH--VLPFFRFYRGAHGRVCSFS--CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       166 ~~~~I~--~~PT~~~~~~G~~~v~~~~--~g~~~~~~l~~~L~k~~~  208 (290)
                      +.|++.  .+|.++++..++  ...+.  .+..+.+.|.+||++++.
T Consensus       285 ~~~gl~~~~~P~i~i~~~~~--~y~~~~~~~~~~~~~i~~F~~d~~~  329 (382)
T 2r2j_A          285 LHIQKTPADCPVIAIDSFRH--MYVFGDFKDVLIPGKLKQFVFDLHS  329 (382)
T ss_dssp             HHTTCCGGGCSEEEEECSSC--EEECCCSGGGGSTTHHHHHHHHHHH
T ss_pred             HHcCCCccCCCEEEEEcchh--cCCCCccccccCHHHHHHHHHHHHC
Confidence            999997  689999886544  22221  123367889999998863

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=97.54  E-value=0.0003  Score=64.89  Aligned_cols=86  Identities=15%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc---------------------cHhHHHhcCcc----
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE---------------------HKSMCYSLNVH----  171 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~---------------------~~~l~~~~~I~----  171 (290)
                      .+|+|||+|| +.||+.|....+.+.+  ..+.++.++.|+.|.                     +..+++.|||.    
T Consensus        23 ~Gk~vvl~F~p~~~tp~C~~e~~~~~~--~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~~~  100 (322)
T 4eo3_A           23 YGKYTILFFFPKAGTSGSTREAVEFSR--ENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGK  100 (322)
T ss_dssp             TTSEEEEEECSSTTSHHHHHHHHHHHH--SCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTTCEETTE
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHH--HhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcCCCCCCc
Confidence            5889999999 7899999988777654  345678888887653                     34688999995    


Q ss_pred             ccCceEEEe-CCCceeee-ec--CCccCHHHHHHHHHhhC
Q 022923          172 VLPFFRFYR-GAHGRVCS-FS--CTNATIKKFKDALAKHT  207 (290)
Q Consensus       172 ~~PT~~~~~-~G~~~v~~-~~--~g~~~~~~l~~~L~k~~  207 (290)
                      .+|+.++++ +|.  +.. +.  ......+++.+.|++..
T Consensus       101 ~~r~tfiId~~G~--i~~~~~~v~~~~h~~~~l~~~~~~~  138 (322)
T 4eo3_A          101 TVRSTFLIDRWGF--VRKEWRRVKVEGHVQEVKEALDRLI  138 (322)
T ss_dssp             ECCEEEEECTTSB--EEEEEESCCSTTHHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCE--EEEEEeCCCccccHHHHHHHHhhhc
Confidence            467766664 443  432 22  12345777877777653

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.53  E-value=0.0017  Score=52.90  Aligned_cols=110  Identities=10%  Similarity=0.088  Sum_probs=74.5

Q ss_pred             CCCCeeEeCCHhHHHHHHHhcCCCeEEEE-EeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEec--cccHhHHHhcCccc
Q 022923           97 LQPNMREVASAQDLVESLWHAGDKLVVVD-FFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNY--EEHKSMCYSLNVHV  172 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~~~k~vlV~-FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~--d~~~~l~~~~~I~~  172 (290)
                      ..|-|.+++. ++.....  ..+-++.+. |...--..-..+.+.+.+++++|. .+.|+.||.  +++..+.+.||+..
T Consensus        12 ~~PLV~e~t~-en~~~~~--~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~   88 (147)
T 3bj5_A           12 QLPLVIEFTE-QTAPKIF--GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKK   88 (147)
T ss_dssp             ---CEEECCT-TTHHHHH--SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCG
T ss_pred             cCCeeEEecc-ccHHHHh--cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCc
Confidence            3455666655 3455554  344455444 443333445668899999999996 499999999  66777889999996


Q ss_pred             --cCceEEEeC-CCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          173 --LPFFRFYRG-AHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       173 --~PT~~~~~~-G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                        +|+++++.. +.+.-..+..+..+.+.|.+|+++++.+
T Consensus        89 ~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~G  128 (147)
T 3bj5_A           89 EECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEG  128 (147)
T ss_dssp             GGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTT
T ss_pred             ccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcC
Confidence              999999975 3322222223678899999999998743

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.00063  Score=59.49  Aligned_cols=88  Identities=11%  Similarity=-0.008  Sum_probs=63.1

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|.+||+|| ++||+.|....+.+.+..++|.  ++.++.|.+|.                            +.++++
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak  130 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSR  130 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHH
Confidence            5789999999 9999999999999999988874  68888887663                            245788


Q ss_pred             hcCcc------ccCceEEEeCCCceeee--e--cCCccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCS--F--SCTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~--~--~~g~~~~~~l~~~L~k~  206 (290)
                      .|+|-      .++.+++++..+ ++..  +  ...+++.+++.+.|+.+
T Consensus       131 ~YGv~~~~~g~~~R~tFiID~~G-~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          131 DYGVLIEEEGVALRGLFIIDPKG-VIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             HHTCEETTTTEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceeeEEEEECCCC-eEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            89884      234455553322 3321  1  12457888888887754

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00038  Score=63.27  Aligned_cols=115  Identities=10%  Similarity=0.111  Sum_probs=83.2

Q ss_pred             hhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHH-
Q 022923           88 KAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMC-  165 (290)
Q Consensus        88 ~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~-  165 (290)
                      .+.+|..+...+.+..|.+.+++++.+.. .+++++|.|...     ....+.|..++..+ +++.|+.++-++...+. 
T Consensus       132 ~i~~fl~~~~~~~v~~i~~~~~l~~~l~~-~~~~~vi~fs~~-----~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~  205 (298)
T 3ed3_A          132 PIVDFSLSRIRSYVKKFVRIDTLGSLLRK-SPKLSVVLFSKQ-----DKISPVYKSIALDWLGKFDFYSISNKKLKQLTD  205 (298)
T ss_dssp             HHHHHHHTTCCCCEEECSCGGGHHHHHTS-CSSEEEEEEESS-----SSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCT
T ss_pred             HHHHHHHHhcccccEEcCCHHHHHHHHhc-CCceEEEEEcCC-----CcchHHHHHHHHHhhcCcEEEEEcchHhhhhhh
Confidence            34567777778889999999999888753 367777777332     23457899999988 56999999855433222 


Q ss_pred             -HhcC-----c-------------cccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          166 -YSLN-----V-------------HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       166 -~~~~-----I-------------~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                       ++|+     |             ...|++++|++..++...|.++..+.++|.+||.+...
T Consensus       206 ~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~  267 (298)
T 3ed3_A          206 MNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFS  267 (298)
T ss_dssp             TCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHT
T ss_pred             hhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcC
Confidence             2333     3             67999999987655677777556899999999996543

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.42  E-value=6e-05  Score=63.79  Aligned_cols=40  Identities=13%  Similarity=0.337  Sum_probs=37.0

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE  159 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d  159 (290)
                      ++++||.|+..||++|+++.|.+.++.+++ ++.|..+++.
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEecc
Confidence            688999999999999999999999999998 8888888875

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.37  E-value=0.0027  Score=55.87  Aligned_cols=118  Identities=10%  Similarity=0.109  Sum_probs=85.4

Q ss_pred             chhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeC-CCC---h-HHHHHHHHHHHHHHHCCCcEEEEEecccc
Q 022923           87 GKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFS-PGC---G-GCKALHPKICQLAEMNPDVQFLQVNYEEH  161 (290)
Q Consensus        87 ~~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA-~WC---~-~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~  161 (290)
                      ..+..|......|.+.+++.. ++....   .+++.++.|+. +++   . ....+...+.+++++|.++.|+.+|.++.
T Consensus       104 ~~l~~fi~~~~~Plv~e~t~~-n~~~~~---~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~kki~F~~~d~~~~  179 (250)
T 3ec3_A          104 SAIKDYVVKHALPLVGHRKTS-NDAKRY---SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDY  179 (250)
T ss_dssp             HHHHHHHHHHSSCTEEEECTT-THHHHS---CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCTTSEEEEEETTTT
T ss_pred             HHHHHHHHHcCCCceeecCcc-chhhhh---ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhcceeEEEEcHHHH
Confidence            346688888889999999874 454444   35666666664 333   3 34557888999999988999999999988


Q ss_pred             HhHHHhcCccc--cC-ceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          162 KSMCYSLNVHV--LP-FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       162 ~~l~~~~~I~~--~P-T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      ....+.||+..  +| .++++..+ +....+..+..+.+.|.+|+++.+.+
T Consensus       180 ~~~l~~fgl~~~~~~p~~~~~~~~-~~ky~~~~~~~t~~~i~~Fv~~~~~G  229 (250)
T 3ec3_A          180 ATEVKDLGLSESGGDVNAAILDES-GKKFAMEPEEFDSDALREFVMAFKKG  229 (250)
T ss_dssp             HHHHHHTTCSSCSCSCEEEEECTT-SCEEECCCCSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCccCCCcEEEEEcCC-CceecCCcccCCHHHHHHHHHHHHCC
Confidence            88889999974  45 56666433 23333333568999999999998744

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=97.32  E-value=0.0012  Score=56.46  Aligned_cols=40  Identities=30%  Similarity=0.454  Sum_probs=31.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHH-HHHHHHCC---CcEEEEEe
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKI-CQLAEMNP---DVQFLQVN  157 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l-~~la~~~~---~v~~~~Vd  157 (290)
                      ..+..||.|+...|++|+.+.+.+ ..+.++|.   +|+|...+
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~   71 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVN   71 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEE
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEe
Confidence            467889999999999999999986 56777773   47777654

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.28  E-value=0.00026  Score=57.31  Aligned_cols=66  Identities=11%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             hHHHHHHHhcCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHH----hcCccccCceEEE
Q 022923          108 QDLVESLWHAGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY----SLNVHVLPFFRFY  179 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~----~~~I~~~PT~~~~  179 (290)
                      +.+.+.+.   ...|+||.++    +||+.|++....|.++     ++.|..+|+++++++.+    ..+...+|.+  |
T Consensus        26 ~~v~~~i~---~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-----gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V--f   95 (135)
T 2wci_A           26 EKIQRQIA---ENPILLYMKGSPKLPSCGFSAQAVQALAAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQL--W   95 (135)
T ss_dssp             HHHHHHHH---HCSEEEEESBCSSSBSSHHHHHHHHHHHTT-----CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--E
T ss_pred             HHHHHHhc---cCCEEEEEEecCCCCCCccHHHHHHHHHHc-----CCceEEEECCCCHHHHHHHHHHHCCCCcCEE--E
Confidence            44555553   2347776665    9999999999988765     57788889887665443    4577777865  4


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus        96 I~G~   99 (135)
T 2wci_A           96 VDGE   99 (135)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            4775

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00053  Score=54.90  Aligned_cols=70  Identities=10%  Similarity=0.139  Sum_probs=44.4

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----hHHHhcCccccCceEEEeCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~~I~~~PT~~~~~~G  182 (290)
                      ++|.+++  +.++  |+.|..+||++|++....|.+.......+.++.||.+.+.     .+.+..+...+|++++  +|
T Consensus         5 ~~~~~ii--~~~~--Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI--~G   78 (127)
T 3l4n_A            5 KEYSLIL--DLSP--IIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV--NG   78 (127)
T ss_dssp             HHHHHHH--TSCS--EEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--TT
T ss_pred             HHHHHHH--ccCC--EEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE--CC
Confidence            5777777  2333  6668999999999999988874211123455555543322     2334458888998844  66


Q ss_pred             C
Q 022923          183 H  183 (290)
Q Consensus       183 ~  183 (290)
                      +
T Consensus        79 ~   79 (127)
T 3l4n_A           79 V   79 (127)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.05  E-value=0.0019  Score=56.49  Aligned_cols=40  Identities=13%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHH-HHHHHHC---CCcEEEEEe
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKI-CQLAEMN---PDVQFLQVN  157 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l-~~la~~~---~~v~~~~Vd  157 (290)
                      ..+..|+.|+...|++|+++.+.+ .++.++|   ++|+|+..+
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~   81 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH   81 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            456789999999999999999964 6787776   346665543

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.01  E-value=0.0026  Score=55.88  Aligned_cols=116  Identities=6%  Similarity=0.061  Sum_probs=81.4

Q ss_pred             cchhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCC-h--HH-HHHHHHHHHHHHHCC-C---cEEEEEe
Q 022923           86 IGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGC-G--GC-KALHPKICQLAEMNP-D---VQFLQVN  157 (290)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC-~--~C-k~~~p~l~~la~~~~-~---v~~~~Vd  157 (290)
                      ...+.+|......|.+.+++.. ++...    .+.+++|.|+..-+ .  .| ..+...+.+++++|. .   +.|+.+|
T Consensus       101 ~~~l~~fi~~~~~Plv~e~t~~-n~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d  175 (252)
T 2h8l_A          101 SGKIKKFIQENIFGICPHMTED-NKDLI----QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVAS  175 (252)
T ss_dssp             HHHHHHHHHHHSSCSSCEECTT-THHHH----SSSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             HHHHHHHHHhcccCCeeecccc-cHhhh----cCCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEc
Confidence            3346788888888999999885 45553    23455666664332 2  22 246777888888874 2   9999999


Q ss_pred             ccccHhHHHhcCc----cccCceEEEeCCCceeeeecCCccCHHH--HHHHHHhhCC
Q 022923          158 YEEHKSMCYSLNV----HVLPFFRFYRGAHGRVCSFSCTNATIKK--FKDALAKHTP  208 (290)
Q Consensus       158 ~d~~~~l~~~~~I----~~~PT~~~~~~G~~~v~~~~~g~~~~~~--l~~~L~k~~~  208 (290)
                      .++...+.+.||+    ..+|.++++...+ ....+. +..+.+.  |.+|+++.+.
T Consensus       176 ~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~-~ky~~~-~~~t~~~~~i~~F~~~~~~  230 (252)
T 2h8l_A          176 RKTFSHELSDFGLESTAGEIPVVAIRTAKG-EKFVMQ-EEFSRDGKALERFLQDYFD  230 (252)
T ss_dssp             TTTTHHHHGGGTCCCCSCSSCEEEEECTTS-CEEECC-SCCCTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCccCCCCEEEEEeCcC-cEecCC-cccCcchHHHHHHHHHHHC
Confidence            9999889999999    3699999985422 233333 5567777  9999998863

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.99  E-value=0.0056  Score=53.21  Aligned_cols=98  Identities=10%  Similarity=0.081  Sum_probs=66.7

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  184 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~  184 (290)
                      .+.+++.+.+.....+++.+.|...-|..++.+.-   .+ ..++++.+..++ +.+..++++|+|+++|++++|..++ 
T Consensus       143 ~~~~~l~~~~~~~~~~~~al~f~~~~~~~~~~~~~---d~-~~~~~i~v~~~~-~~~~~l~~~f~v~~~Pslvl~~~~g-  216 (244)
T 3q6o_A          143 AXLEEIDGFFARNNEEYLALIFEXGGSYLAREVAL---DL-SQHKGVAVRRVL-NTEANVVRKFGVTDFPSCYLLFRNG-  216 (244)
T ss_dssp             CCHHHHHTHHHHCCCSEEEEEEECTTCCHHHHHHH---HT-TTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTS-
T ss_pred             ccHHHHHHHhhcCCCceEEEEEEECCcchHHHHHH---Hh-ccCCceEEEEEe-CchHHHHHHcCCCCCCeEEEEeCCC-
Confidence            34577888777667788888899877654443222   11 123457776666 5568999999999999998886543 


Q ss_pred             eeeeecCCccCHHHHHHHHHhhCC
Q 022923          185 RVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       185 ~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +...+.....+.+.+..+|++..+
T Consensus       217 ~~~~~~~~~~~r~~~~~~l~~~~~  240 (244)
T 3q6o_A          217 SVSRVPVLMESRSFYTAYLQRLSG  240 (244)
T ss_dssp             CEEECCCSSSSHHHHHHHHHTC--
T ss_pred             CeEeeccccccHHHHHHHHHhCCC
Confidence            466666556677777777777653

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=96.97  E-value=0.0018  Score=49.92  Aligned_cols=65  Identities=25%  Similarity=0.312  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEe
Q 022923          109 DLVESLWHAGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYR  180 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~  180 (290)
                      .+++.+   ....|+|+-..    |||++|++....|.+.     ++.|-.+|+++++++    .+..+...+|.+  |.
T Consensus        10 ~v~~~i---~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~-----gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i--fi   79 (109)
T 3ipz_A           10 TLEKLV---NSEKVVLFMKGTRDFPMCGFSNTVVQILKNL-----NVPFEDVNILENEMLRQGLKEYSNWPTFPQL--YI   79 (109)
T ss_dssp             HHHHHH---TSSSEEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE--EE
T ss_pred             HHHHHH---ccCCEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHHCCCCCCeE--EE
Confidence            344444   33445554444    5999999999988875     567778888776554    334578889965  34


Q ss_pred             CCC
Q 022923          181 GAH  183 (290)
Q Consensus       181 ~G~  183 (290)
                      +|+
T Consensus        80 ~g~   82 (109)
T 3ipz_A           80 GGE   82 (109)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            775

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=96.96  E-value=0.0017  Score=54.97  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=33.1

Q ss_pred             CC-eEEEEEeCCCChHHHH-HHHHHHHHHHHC--CCc-EEEEEecc
Q 022923          119 DK-LVVVDFFSPGCGGCKA-LHPKICQLAEMN--PDV-QFLQVNYE  159 (290)
Q Consensus       119 ~k-~vlV~FyA~WC~~Ck~-~~p~l~~la~~~--~~v-~~~~Vd~d  159 (290)
                      +| .||+.|+++||+.|.. ..+.|.+..++|  .++ .++.|.+|
T Consensus        47 Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D   92 (176)
T 4f82_A           47 GKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVN   92 (176)
T ss_dssp             TCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred             CCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            45 5566777999999999 999999988887  357 78888765

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=96.69  E-value=0.0033  Score=46.03  Aligned_cols=55  Identities=13%  Similarity=0.129  Sum_probs=40.2

Q ss_pred             EEEEeCC----CChHHHHHHHHHHHHHHHCCCcEEEEEecc-----ccH----hHHHhcCcc-----ccCceEEEeCCC
Q 022923          123 VVDFFSP----GCGGCKALHPKICQLAEMNPDVQFLQVNYE-----EHK----SMCYSLNVH-----VLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~----WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----~~~----~l~~~~~I~-----~~PT~~~~~~G~  183 (290)
                      ++.|+.+    ||++|++....|++.     ++.+-.+|++     .++    ++.+..+..     .+|++++ .+|+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~-----gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~~g~   74 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK-----KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGS   74 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-----TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc-----CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-ECCE
Confidence            4567889    999999999888774     5667777777     543    456677888     8897654 3665

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=96.68  E-value=0.0034  Score=54.90  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|.+||+|| ++||+.|......|.+...+|.  ++.++.|.+|.                            +.++++
T Consensus        55 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  134 (219)
T 3tue_A           55 KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIAR  134 (219)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHHHH
Confidence            5789999999 9999999999999998888874  58888887653                            345788


Q ss_pred             hcCcc----ccC--ceEEEeCCCceeeee----cCCccCHHHHHHHHHhh
Q 022923          167 SLNVH----VLP--FFRFYRGAHGRVCSF----SCTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~----~~P--T~~~~~~G~~~v~~~----~~g~~~~~~l~~~L~k~  206 (290)
                      .|||-    +++  .++++ |.++++...    ...+++.+++.+.|+.+
T Consensus       135 ~yGv~~~~~g~~~R~tFiI-Dp~g~Ir~~~~~~~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          135 SYGVLEESQGVAYRGLFII-DPHGMLRQITVNDMPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             HTTCEETTTTEECEEEEEE-CTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCeeEEEEEEE-CCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            89885    333  23333 333333221    22467888888887754

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=96.68  E-value=0.0029  Score=57.06  Aligned_cols=80  Identities=20%  Similarity=0.267  Sum_probs=56.6

Q ss_pred             CeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc------------------ccHhHHHhcCcccc--CceEEE
Q 022923          120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE------------------EHKSMCYSLNVHVL--PFFRFY  179 (290)
Q Consensus       120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d------------------~~~~l~~~~~I~~~--PT~~~~  179 (290)
                      +..|..|..++|++|......+.+++..++ +..+.++++                  .+..+.++++++.+  |.+++ 
T Consensus        43 ~~~VelyTs~gCp~C~~Ak~lL~~~~~~~~-vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~I-  120 (270)
T 2axo_A           43 KGVVELFTSQGCASCPPADEALRKMIQKGD-VVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL-  120 (270)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHHTS-SEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE-
T ss_pred             CcEEEEEeCCCCCChHHHHHHHHHhhccCC-eeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEE-
Confidence            357778999999999999999999988754 432233322                  23457888999988  98666 


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                       ||+..+     ++.+.++|.+.|.+..
T Consensus       121 -ng~~~v-----~G~d~~~l~~~l~~~~  142 (270)
T 2axo_A          121 -NGRDHV-----KGADVRGIYDRLDAFK  142 (270)
T ss_dssp             -TTTEEE-----ETTCHHHHHHHHHHHH
T ss_pred             -CCEEee-----cCCCHHHHHHHHHHhh
Confidence             776211     3456788888887653

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.0052  Score=48.45  Aligned_cols=65  Identities=18%  Similarity=0.226  Sum_probs=42.5

Q ss_pred             HHHHHHHhcCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcE---EEEEeccccHhHH----HhcCccccCceE
Q 022923          109 DLVESLWHAGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQ---FLQVNYEEHKSMC----YSLNVHVLPFFR  177 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~---~~~Vd~d~~~~l~----~~~~I~~~PT~~  177 (290)
                      .+++.+  + ...|+|+-..    |||++|++....|.+.     ++.   |..+|++.++++.    +..+...+|.+ 
T Consensus         8 ~v~~~i--~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-----gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v-   78 (121)
T 3gx8_A            8 AIEDAI--E-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQ-----GVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL-   78 (121)
T ss_dssp             HHHHHH--H-SCSEEEEESBCSSSBCTTHHHHHHHHHHHH-----TBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE-
T ss_pred             HHHHHh--c-cCCEEEEEeccCCCCCCccHHHHHHHHHHc-----CCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE-
Confidence            344555  2 3345554444    5999999999999887     344   7778887765543    34466777776 


Q ss_pred             EEeCCC
Q 022923          178 FYRGAH  183 (290)
Q Consensus       178 ~~~~G~  183 (290)
                       |.+|+
T Consensus        79 -fI~g~   83 (121)
T 3gx8_A           79 -YVNKE   83 (121)
T ss_dssp             -EETTE
T ss_pred             -EECCE
Confidence             44775

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.61  E-value=0.0038  Score=54.28  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=50.0

Q ss_pred             CCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc---HhHHHhcCccccCceEEEe
Q 022923          105 ASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       105 ~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~---~~l~~~~~I~~~PT~~~~~  180 (290)
                      .+.+++.+.+... -....++.|+.+||+.|++....+++.     ++.+-.+|++++   .++.+.++...+|++++  
T Consensus       153 ~~~~~il~~l~~~~i~~~~i~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~--  225 (241)
T 1nm3_A          153 SDADTMLKYLAPQHQVQESISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--  225 (241)
T ss_dssp             SSHHHHHHHHCTTSCCCCCEEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--
T ss_pred             cCHHHHHHHhhhhccccceEEEEECCCChHHHHHHHHHHHc-----CCceEEEECCCchHHHHHHHHhCCCCcCEEEE--
Confidence            4556666666421 123456678899999999999988875     455666777644   45778899999999753  


Q ss_pred             CCC
Q 022923          181 GAH  183 (290)
Q Consensus       181 ~G~  183 (290)
                      +|+
T Consensus       226 ~g~  228 (241)
T 1nm3_A          226 GGK  228 (241)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            664

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=96.45  E-value=0.0035  Score=48.64  Aligned_cols=64  Identities=14%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCCCeEEEEEeC-----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHH----hcCccccCceEEE
Q 022923          109 DLVESLWHAGDKLVVVDFFS-----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY----SLNVHVLPFFRFY  179 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA-----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~----~~~I~~~PT~~~~  179 (290)
                      .+++.+   ...+|+| |..     +||++|++....|.+.     ++.|..+|++.++++.+    ..+...+|.++  
T Consensus         8 ~v~~~i---~~~~Vvl-f~kg~~~~~~Cp~C~~ak~~L~~~-----gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if--   76 (111)
T 3zyw_A            8 RLKKLT---HAAPCML-FMKGTPQEPRCGFSKQMVEILHKH-----NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY--   76 (111)
T ss_dssp             HHHHHH---TSSSEEE-EESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE--
T ss_pred             HHHHHH---hcCCEEE-EEecCCCCCcchhHHHHHHHHHHc-----CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE--
Confidence            344444   2344444 666     9999999999888865     56677788887665433    34777888864  


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus        77 i~g~   80 (111)
T 3zyw_A           77 VSGE   80 (111)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            3775

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=96.42  E-value=0.018  Score=48.62  Aligned_cols=42  Identities=7%  Similarity=0.104  Sum_probs=32.6

Q ss_pred             CCCeEEEEEe-CCCChHHH-HHHHHHHHHHHHC---CCcE-EEEEecc
Q 022923          118 GDKLVVVDFF-SPGCGGCK-ALHPKICQLAEMN---PDVQ-FLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck-~~~p~l~~la~~~---~~v~-~~~Vd~d  159 (290)
                      .++.+||+|| ..||+.|. ...+.+.+...++   .++. ++.|.+|
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D   89 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNN   89 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            4677888777 89999999 8888888888777   4563 7777655

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=96.40  E-value=0.005  Score=45.71  Aligned_cols=54  Identities=13%  Similarity=0.143  Sum_probs=38.6

Q ss_pred             EEEEeCCCChHH------HHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcC--ccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGC------KALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLN--VHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~C------k~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~--I~~~PT~~~~~~G~  183 (290)
                      ++.|+.+||+.|      ++....|++.     ++.|..+|++.+++    +.+.++  ...+|.++  .+|+
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if--i~g~   69 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK-----RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV--NGNH   69 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE--ETTE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE--ECCE
Confidence            556889999999      6766666543     57788888887643    455677  77899764  3665

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.37  E-value=0.0055  Score=47.37  Aligned_cols=55  Identities=15%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             EEEEEeCCCChHHH------HHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhc--------CccccCceEEEeCCC
Q 022923          122 VVVDFFSPGCGGCK------ALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSL--------NVHVLPFFRFYRGAH  183 (290)
Q Consensus       122 vlV~FyA~WC~~Ck------~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~--------~I~~~PT~~~~~~G~  183 (290)
                      -|+.|+.+||+.|+      +....|++.     ++.|..+|++.+++    +.+.+        +...+|.+  |.+|+
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~-----gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~v--fi~g~   81 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEAN-----KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQI--FNGDR   81 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEE--EETTE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEE--EECCE
Confidence            35668899999999      666666543     57888899987654    33444        56667765  34665

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=95.57  E-value=0.021  Score=47.31  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=34.8

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHH-HHHHHHCCC-cEEEEEecc
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKI-CQLAEMNPD-VQFLQVNYE  159 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l-~~la~~~~~-v~~~~Vd~d  159 (290)
                      .++++|+||..+|++|..+.+.+ .++.+++++ +.+..+...
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l~   59 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLE   59 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECT
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEecC
Confidence            56688999999999999999999 999998864 777777654

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=95.40  E-value=0.12  Score=43.65  Aligned_cols=42  Identities=10%  Similarity=0.085  Sum_probs=31.9

Q ss_pred             HHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          164 MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       164 l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .++++||.++|||++..+|+  ......|..+.+.+.+.|++++
T Consensus       161 ~a~~~gv~g~Pt~~v~~~~~--~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          161 LAKSLGVNSYPSLVLQINDA--YFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHTTCCSSSEEEEEETTE--EEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEEECCE--EEEeeCCCCCHHHHHHHHHHHH
Confidence            35677999999999987775  3333347788899998888775

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=95.02  E-value=0.11  Score=50.83  Aligned_cols=93  Identities=10%  Similarity=-0.011  Sum_probs=61.6

Q ss_pred             CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923          105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG  181 (290)
Q Consensus       105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~  181 (290)
                      .+.+++.+.+.....++++|.|+...       .....++...+   +++.+..++ +.+.+++++|+|+.+|++++|+.
T Consensus       143 it~~~l~~~l~~~~~~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~-~~~~~l~~kfgV~~~Pslvl~~~  214 (519)
T 3t58_A          143 AKLNDIDGFFTRNKADYLALVFERED-------SYLGREVTLDLSQYHAVAVRRVL-NTESDLVNKFGVTDFPSCYLLLR  214 (519)
T ss_dssp             CCHHHHTTGGGSCCCSEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEET
T ss_pred             CCHHHHHHHhccCCCCeEEEEecCCc-------hHHHHHHHHHhhccCCeeEEEec-CchHHHHHHcCCCCCCeEEEEeC
Confidence            34577877777667888999999765       22344444444   456765555 66789999999999999999976


Q ss_pred             CCceeeeecCCccCHHHHHHHHHhh
Q 022923          182 AHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       182 G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      ++ .+..+.......+.+..+|+++
T Consensus       215 nG-k~~~~~v~~~~r~~~~~~l~~l  238 (519)
T 3t58_A          215 NG-SVSRVPVLVESRSFYTSYLRGL  238 (519)
T ss_dssp             TS-CEEECCCSSCSHHHHHHHHTTS
T ss_pred             CC-ceeecccccccHHHHHHHHHHc
Confidence            64 3444443344445555665543

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=93.65  E-value=0.12  Score=40.65  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=41.0

Q ss_pred             HhHHHHHHHhcCCCeEEEEEe-----CCCChHHHHHHHHHHHHHHHCCCc-EEEEEeccccHhHHH----hcCccccCce
Q 022923          107 AQDLVESLWHAGDKLVVVDFF-----SPGCGGCKALHPKICQLAEMNPDV-QFLQVNYEEHKSMCY----SLNVHVLPFF  176 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~Fy-----A~WC~~Ck~~~p~l~~la~~~~~v-~~~~Vd~d~~~~l~~----~~~I~~~PT~  176 (290)
                      .+.+++.+..  + +|+| |.     .|.|+.|++....|.+.     ++ .|..+|++.++++.+    .-+-..+|.+
T Consensus        10 ~e~i~~~i~~--~-~Vvv-F~Kgt~~~P~C~fc~~ak~lL~~~-----gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqI   80 (118)
T 2wul_A           10 AEQLDALVKK--D-KVVV-FLKGTPEQPQCGFSNAVVQILRLH-----GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQV   80 (118)
T ss_dssp             HHHHHHHHHH--S-SEEE-EESBCSSSBSSHHHHHHHHHHHHT-----TCCSCEEEETTSCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHHHhc--C-CEEE-EEcCCCCCCCCHHHHHHHHHHHHh-----CCcCeEeecccCCHHHHHHHHHhccCCCCCeE
Confidence            4667777732  3 4544 44     36899999998877654     34 367778877665543    3344455554


Q ss_pred             EEEeCCC
Q 022923          177 RFYRGAH  183 (290)
Q Consensus       177 ~~~~~G~  183 (290)
                        |-+|+
T Consensus        81 --FI~g~   85 (118)
T 2wul_A           81 --YLNGE   85 (118)
T ss_dssp             --EETTE
T ss_pred             --eECCE
Confidence              45776

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.44  E-value=0.074  Score=52.28  Aligned_cols=69  Identities=12%  Similarity=0.255  Sum_probs=43.6

Q ss_pred             eCCH-hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc---Hh----HHHhcCccccCc
Q 022923          104 VASA-QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KS----MCYSLNVHVLPF  175 (290)
Q Consensus       104 I~s~-~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~---~~----l~~~~~I~~~PT  175 (290)
                      +++. +.+.+.+..  .+  ++.|..+||+.|++....|.+.     ++.+-.+|++..   .+    +.+..+...+|.
T Consensus         4 ~~~~~~~v~~~i~~--~~--v~vy~~~~Cp~C~~~k~~L~~~-----~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~   74 (598)
T 2x8g_A            4 ADGTSQWLRKTVDS--AA--VILFSKTTCPYCKKVKDVLAEA-----KIKHATIELDQLSNGSAIQKCLASFSKIETVPQ   74 (598)
T ss_dssp             --CHHHHHHHHHHH--CS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCE
T ss_pred             CccHHHHHHHHhcc--CC--EEEEECCCChhHHHHHHHHHHC-----CCCcEEEEcccCcchHHHHHHHHHHhCCceeCE
Confidence            3444 556666632  33  5669999999999999988865     344555666542   33    334567788887


Q ss_pred             eEEEeCCC
Q 022923          176 FRFYRGAH  183 (290)
Q Consensus       176 ~~~~~~G~  183 (290)
                      +  |.+|+
T Consensus        75 v--~i~g~   80 (598)
T 2x8g_A           75 M--FVRGK   80 (598)
T ss_dssp             E--EETTE
T ss_pred             E--EECCE
Confidence            6  44665

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=93.23  E-value=0.15  Score=40.23  Aligned_cols=55  Identities=9%  Similarity=0.201  Sum_probs=35.4

Q ss_pred             EEEEEeCCCChHHH------HHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhc--------CccccCceEEEeCCC
Q 022923          122 VVVDFFSPGCGGCK------ALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSL--------NVHVLPFFRFYRGAH  183 (290)
Q Consensus       122 vlV~FyA~WC~~Ck------~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~--------~I~~~PT~~~~~~G~  183 (290)
                      ||+.|.++.|+.|+      +..-.|+.     .+|.|-.+|++.+++    +.++.        |...+|.  +|.+|.
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~-----kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQ--IFi~~~   73 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEA-----NKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQ--IFNESQ   73 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHH-----TTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCE--EEETTE
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCE--EEECCE
Confidence            46677899999994      33333332     368899999986543    45566        5666664  344664

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=93.16  E-value=0.34  Score=37.65  Aligned_cols=42  Identities=10%  Similarity=0.139  Sum_probs=30.3

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-------hHHHhcC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-------SMCYSLN  169 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-------~l~~~~~  169 (290)
                      +..|+.++|+.|++....+++.     ++.|-.+|+++++       ++.++++
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~-----gi~y~~~di~~~~~~~~~l~~~~~~~g   55 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH-----GIDYTFHDYKKEGLDAETLDRFLKTVP   55 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCEEEEEHHHHCCCHHHHHHHHHHSC
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCcEEEEeeeCCCCCHHHHHHHHHHcC
Confidence            5567899999999999888875     5667677775432       3455666

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=92.97  E-value=0.098  Score=44.07  Aligned_cols=47  Identities=11%  Similarity=0.044  Sum_probs=36.3

Q ss_pred             cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          159 EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       159 d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++..++++++|.++|||+++.||+ .+..+ .|..+.+.|.+.|++.+
T Consensus       163 ~~~~~~a~~~gv~g~Pt~~i~~~G~-~~~~~-~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          163 LAGFQRVAQWGISGFPALVVESGTD-RYLIT-TGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTE-EEEEE-SSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccceEEEEECCE-EEEec-cCCCCHHHHHHHHHHHH
Confidence            3456678999999999999998886 32233 37788999999988764

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=92.44  E-value=0.07  Score=44.56  Aligned_cols=43  Identities=7%  Similarity=0.004  Sum_probs=33.8

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcE-EEEEeccc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQ-FLQVNYEE  160 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~-~~~Vd~d~  160 (290)
                      .++.+||+|| ..||+.|....+.+.+...++.  ++. ++.|.+|.
T Consensus        41 ~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~   87 (171)
T 2xhf_A           41 RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVND   87 (171)
T ss_dssp             TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            4678888888 7899999999999888777664  574 77777663

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=92.23  E-value=0.3  Score=40.12  Aligned_cols=41  Identities=29%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHH-HHHHHHCC---CcEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKI-CQLAEMNP---DVQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l-~~la~~~~---~v~~~~Vd~  158 (290)
                      ..+..|+.|+..-|++|+.+.+.+ ..+.++|.   ++++...++
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~   54 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNL   54 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEec
Confidence            467789999999999999999998 57878874   577776654

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=92.03  E-value=0.045  Score=51.22  Aligned_cols=59  Identities=15%  Similarity=0.051  Sum_probs=38.3

Q ss_pred             EEEEeCCCChHHHHHHH-HHHHHHHHCCCcEEEEEec-ccc----HhHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHP-KICQLAEMNPDVQFLQVNY-EEH----KSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p-~l~~la~~~~~v~~~~Vd~-d~~----~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      |+.|..+||+.|++... .|+++.-.|..+.++.+|- +++    ..|.+..+...+|.++  -+|+
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVF--I~Gk  327 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY--INGK  327 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEE--ETTE
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEE--ECCE
Confidence            44588999999999876 5666544454555555442 222    3455667889999864  3775

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=91.25  E-value=0.55  Score=36.06  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=26.3

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH  161 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~  161 (290)
                      ++.|+.++|+.|++....+++.     ++.|-.+|++++
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~-----gi~~~~~di~~~   35 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH-----KVAYDFHDYKAV   35 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-----TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC-----CCceEEEeecCC
Confidence            4567899999999998888763     577777887643

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=90.32  E-value=2.8  Score=32.09  Aligned_cols=82  Identities=6%  Similarity=0.063  Sum_probs=61.5

Q ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHH
Q 022923          122 VVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK  198 (290)
Q Consensus       122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~  198 (290)
                      ....|.+.--+..++....+.++.+.+.   .+.+--||+.+++++++.++|-++||++-....-  ... ..|..-.++
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK~~P~P--~rr-iiGd~i~~q   89 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPGS--RQV-LSGIDLTDQ   89 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESSS--CEE-EESSCHHHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCeeeccHhhccCCCC--ceE-EeChHHHHH
Confidence            4446777778888888888888776654   4899999999999999999999999987654432  222 236667788


Q ss_pred             HHHHHHhh
Q 022923          199 FKDALAKH  206 (290)
Q Consensus       199 l~~~L~k~  206 (290)
                      ++.|.-+-
T Consensus        90 l~~wwprW   97 (105)
T 1t4y_A           90 LANQLPQW   97 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhHHH
Confidence            88887544

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=89.09  E-value=0.5  Score=39.39  Aligned_cols=41  Identities=15%  Similarity=0.050  Sum_probs=32.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-C-CcEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN-P-DVQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~-~v~~~~Vd~  158 (290)
                      ..+.+||.|....|++|+++.+.+.++.+++ + +|+|+.-+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            3567888999999999999999988776664 5 577776664

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=89.06  E-value=0.44  Score=37.60  Aligned_cols=34  Identities=21%  Similarity=0.460  Sum_probs=26.9

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH  161 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~  161 (290)
                      ++.|+.++|+.|++....+++.     ++.|-.+|++++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~-----gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH-----EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCceEEEEccCC
Confidence            5568899999999999888764     567777787754

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=88.59  E-value=0.4  Score=43.04  Aligned_cols=30  Identities=13%  Similarity=0.207  Sum_probs=26.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHH
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEM  147 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~  147 (290)
                      .++.+++.|.-+.|++|+++.+.+.+..+.
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~  175 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE  175 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC
Confidence            467899999999999999999999966554

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=87.67  E-value=0.31  Score=40.49  Aligned_cols=44  Identities=11%  Similarity=0.125  Sum_probs=33.0

Q ss_pred             ccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       160 ~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .+..+++++||+++|||++  ||+ .+.... |..+.+.|.+.|+..+
T Consensus       140 ~~~~~a~~~gv~GtPtfvv--ng~-~~v~~~-Ga~~~e~~~~~i~~ll  183 (185)
T 3feu_A          140 NAKMLSEKSGISSVPTFVV--NGK-YNVLIG-GHDDPKQIADTIRYLL  183 (185)
T ss_dssp             HHHHHHHHHTCCSSSEEEE--TTT-EEECGG-GCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccCEEEE--CCE-EEEecC-CCCCHHHHHHHHHHHH
Confidence            4556789999999999987  776 223223 6788999999888764

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=87.36  E-value=0.4  Score=39.35  Aligned_cols=41  Identities=7%  Similarity=0.097  Sum_probs=31.1

Q ss_pred             ccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       160 ~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .+..+++++||.++|||++  ||+  .  + .|..+.+.|.+.|++.+
T Consensus       137 ~~~~~a~~~gv~GtPt~vv--nG~--~--~-~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          137 KDKKIAKDNHIKTTPTAFI--NGE--K--V-EDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             HHHHHHHHTTCCSSSEEEE--TTE--E--C-SCTTCHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCCCCCeEEE--CCE--E--c-CCCCCHHHHHHHHHHHH
Confidence            3456789999999999987  665  2  2 26789999999998765

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=87.12  E-value=1.4  Score=37.31  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=31.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHH-HC---CCcEEEEEec
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAE-MN---PDVQFLQVNY  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~-~~---~~v~~~~Vd~  158 (290)
                      ..+.+||.|...-|++|+++.+.+....+ +|   ++|+|+..+.
T Consensus        14 ~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A           14 AAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence            46778999999999999999998765544 76   3477765553

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=83.88  E-value=5.3  Score=38.40  Aligned_cols=104  Identities=14%  Similarity=0.032  Sum_probs=65.0

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +++.+.+.. =.++|.+.++.+-|..|..+...++++++.-+.+.+...| +.  .       ...|+|.+.++|+..-.
T Consensus         8 ~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~-~~--~-------~~~p~~~~~~~~~~~~i   76 (521)
T 1hyu_A            8 TQLRAYLEK-LTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDN-TL--P-------VRKPSFLITNPGSQQGP   76 (521)
T ss_dssp             HHHHHHHTT-CCSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECT-TS--S-------SCSSEEEEECTTCCCSC
T ss_pred             HHHHHHHHh-CCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEcC-Cc--c-------cCCCEEEEecCCCcceE
Confidence            445555533 4678888888888999999999999998877777764322 11  0       57899999987763334


Q ss_pred             eecC--CccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHH
Q 022923          188 SFSC--TNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALA  228 (290)
Q Consensus       188 ~~~~--g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~  228 (290)
                      .|.+  ++.....|...|....+      ....++.+.++.+.
T Consensus        77 ~f~g~p~g~e~~s~~~~l~~~~~------~~~~~~~~~~~~i~  113 (521)
T 1hyu_A           77 RFAGSPLGHEFTSLVLALLWTGG------HPSKEAQSLLEQIR  113 (521)
T ss_dssp             EEESCCCGGGHHHHHHHHHHHTT------CCCCSCHHHHHHHH
T ss_pred             EEeccCcchhHHHHHHHHHhhcC------CCCCCCHHHHHHHH
Confidence            4441  33444555555544432      22344555555554

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=82.58  E-value=5.5  Score=30.74  Aligned_cols=62  Identities=10%  Similarity=0.108  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHCCCcEEEEEeccccH----------hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923          136 ALHPKICQLAEMNPDVQFLQVNYEEHK----------SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA  204 (290)
Q Consensus       136 ~~~p~l~~la~~~~~v~~~~Vd~d~~~----------~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~  204 (290)
                      ++...++.+.++  ++.+.+.|...++          ++.+++|+..+|.+++  ||+  +... +...+.++|.+|+.
T Consensus        28 ~~~~~~~~lk~~--Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~V--DGe--vv~~-G~yPt~eEl~~~lg   99 (110)
T 3kgk_A           28 DFSTDVQWLKQS--GVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLL--DGE--TVMA-GRYPKRAELARWFG   99 (110)
T ss_dssp             HHHHHHHHHHHH--TCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEE--TTE--EEEE-SSCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHC--CCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCE--EEEe-ccCCCHHHHHHHhC
Confidence            344455555553  6899999988765          5678899999998877  776  4433 24589999998875

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=82.29  E-value=1.2  Score=34.49  Aligned_cols=79  Identities=15%  Similarity=0.219  Sum_probs=43.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCccccCceEEEeCCCceeeee--cCCccCH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSF--SCTNATI  196 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~~~G~~~v~~~--~~g~~~~  196 (290)
                      +..|+.++|+.|++....+++.     ++.|-.+|+.++    .++..-++-.+.|.--+++.........  .....+.
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~ls~   76 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH-----DVVFQEHNIMTSPLSRDELLKILSYTENGTEDIISTRSKVFQKLDIDVDELSV   76 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-----TCCEEEEETTTSCCCHHHHHHHHHHCSSTHHHHBCTTCHHHHHTTCCGGGCCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCCCcHHHHHHHHhhcCCCHHHhhcCCcHHHHHcCCCcccCCH
Confidence            4568899999999998888753     577777887653    2333333333445434443322111000  0112455


Q ss_pred             HHHHHHHHhh
Q 022923          197 KKFKDALAKH  206 (290)
Q Consensus       197 ~~l~~~L~k~  206 (290)
                      +++.+.|.++
T Consensus        77 ~~~~~~m~~~   86 (120)
T 3l78_A           77 SELINLISKN   86 (120)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            6666666554

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=82.28  E-value=4.5  Score=31.01  Aligned_cols=62  Identities=15%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHCCCcEEEEEeccccH----------hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923          136 ALHPKICQLAEMNPDVQFLQVNYEEHK----------SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA  204 (290)
Q Consensus       136 ~~~p~l~~la~~~~~v~~~~Vd~d~~~----------~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~  204 (290)
                      ++...++.+.+  .++.+.+.|...++          ++.+++|+..+|.+++  ||+  +.. .+...+.++|.+|+.
T Consensus        31 ~~~~~~~~lk~--~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~V--DGe--vv~-~G~yPt~eEl~~~lg  102 (106)
T 3ktb_A           31 RIAVVIESLKK--QGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLV--DGE--IAV-SQTYPTTKQMSEWTG  102 (106)
T ss_dssp             HHHHHHHHHHH--TTCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEE--TTE--EEE-CSSCCCHHHHHHHHC
T ss_pred             HHHHHHHHHHH--CCCEEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCE--EEE-eccCCCHHHHHHHhC
Confidence            44555556655  47889999987655          5677899999999877  775  443 324589999998863

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=82.14  E-value=0.6  Score=38.17  Aligned_cols=43  Identities=9%  Similarity=0.131  Sum_probs=31.1

Q ss_pred             cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       161 ~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +..+++++||.++|||++  ||+ .... ..|..+.+.|.+.|++.+
T Consensus       151 ~~~~a~~~gv~gtPt~~i--ng~-~~~~-~~g~~~~~~l~~~i~~~l  193 (195)
T 3c7m_A          151 WKASYDVAKIQGVPAYVV--NGK-YLIY-TKSIKSIDAMADLIRELA  193 (195)
T ss_dssp             GGGHHHHHHHHCSSEEEE--TTT-EEEC-GGGCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccCEEEE--CCE-EEec-cCCCCCHHHHHHHHHHHH
Confidence            456788999999999766  776 2222 225568999999988764

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=81.83  E-value=0.56  Score=39.07  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=28.9

Q ss_pred             cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       161 ~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                      +...++++||+++|||++  ||+ .+.+.. |..+.+++.++|
T Consensus       143 ~~~~a~~~GV~gtPtf~i--ng~-~~~~~s-~~~~~e~w~~~l  181 (182)
T 3gn3_A          143 HTKYARQNGIHVSPTFMI--NGL-VQPGMS-SGDPVSKWVSDI  181 (182)
T ss_dssp             HHHHHHHHTCCSSSEEEE--TTE-ECTTCC-TTSCHHHHHHHH
T ss_pred             HHHHHHHCCCCccCEEEE--CCE-EccCCC-CCCCHHHHHHHh
Confidence            345678899999999987  775 222233 778999988876

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=80.72  E-value=0.6  Score=37.54  Aligned_cols=79  Identities=11%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCccccCceEEEeCCCceeeee--cCCccCH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSF--SCTNATI  196 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~~~G~~~v~~~--~~g~~~~  196 (290)
                      +..|+.++|+.|++....+++-     ++.|-.+|+.++    .++.+.++-.++|.--+++.........  .....+.
T Consensus         4 itiY~~p~C~~crkak~~L~~~-----gi~~~~idi~~~~~~~~eL~~~~~~~g~p~~~l~n~~~~~yk~l~l~~~~ls~   78 (141)
T 1s3c_A            4 ITIYHNPASGTSRNTLEMIRNS-----GTEPTIILYLENPPSRDELVKLIADMGISVRALLRKNVEPYEQLGLAEDKFTD   78 (141)
T ss_dssp             CEEECCTTCHHHHHHHHHHHHT-----TCCCEEECTTTSCCCHHHHHHHHHHHTSCHHHHBCSSSHHHHHTTTTSSCCCH
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCCEEEEECCCCCccHHHHHHHhcccCCCHHHhccCCchhHHhcCCccccCCH
Confidence            4467899999999988887763     566777777653    3444455555667655554333111111  1112456


Q ss_pred             HHHHHHHHhh
Q 022923          197 KKFKDALAKH  206 (290)
Q Consensus       197 ~~l~~~L~k~  206 (290)
                      +++.+.|.++
T Consensus        79 ~~~~~lm~~~   88 (141)
T 1s3c_A           79 DQLIDFMLQH   88 (141)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            6666666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	5e-13
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-11
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	3e-10
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	3e-09
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	3e-08
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	6e-08
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	1e-07
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-07
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	1e-07
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-07
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	2e-07
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	2e-07
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	4e-07
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	5e-07
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	6e-07
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	7e-07
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	1e-06
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	1e-05
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-05
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	6e-05
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	8e-05
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	1e-04
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	1e-04
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	1e-04
d1eeja1	156	c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC	3e-04
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	0.001
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	0.001
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	0.002
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	0.003
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	0.003
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	0.003

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 5e-13
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++ V S  D    L  AG +L VV F   GCG C  + P    ++   P   FL+V+  +
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            +    + N+   P F+F+R    R+  +   +A     ++ + +H
Sbjct: 63  CQGTAATNNISATPTFQFFRNKV-RIDQYQGADA--VGLEEKIKQH 105

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++++ S     E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKDAL 203
            + +     V  +P F+F++    +V  FS  N   ++   + L
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQ-KVGEFSGANKEKLEATINEL 104

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.6 bits (136), Expect = 3e-10
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 100 NMREVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY 158
            + E+ + +  +E++        +VV+ +  G  GC AL+  +  LA   P V+F ++  
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRA 159

Query: 159 EEHKSMCYSLNVHVLPFFRFYRGAH--GRVCSFS---CTNATIKKFKDALAKHT--PDR 210
                     +  VLP    Y+G        S +     +      +  L ++   P+R
Sbjct: 160 SNTG-AGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLPER 217

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.4 bits (122), Expect = 3e-09
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEE 160
            +V    DL   L  A  KLVV+DFF+  CG CK + PK+ +L+     +V  L+V+ +E
Sbjct: 8   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            + +    N+  +P F F +    +V  F+  NA  K+ +D +  +
Sbjct: 68  CEDIAMEYNISSMPTFVFLKNG-VKVEEFAGANA--KRLEDVIKAN 110

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 94  EKGLQPNMREVASAQDLVESLWHA--GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDV 151
           E+G    +    +     E         KL+VVDF +  C  CK + P   +LA+  P+V
Sbjct: 2   EEG---QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV 58

Query: 152 QFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            FL+V+ +E K++    NV  +P F F +   G++   +   A        +AKH
Sbjct: 59  TFLKVDVDELKAVAEEWNVEAMPTFIFLKD--GKLVDKT-VGADKDGLPTLVAKH 110

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 47.9 bits (113), Expect = 6e-08
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160
           ++ V S  +    +  + ++LV+VDFF+  CG CK + P   + ++    + F++V+ +E
Sbjct: 2   VKIVTSQAEFDSII--SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 59

Query: 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
              +    N+  +P F+ Y+   G     +   A     K  + K+
Sbjct: 60  VSEVTEKENITSMPTFKVYKN--GSSVD-TLLGANDSALKQLIEKY 102

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 2/103 (1%)

Query: 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYE 159
           +  + +   + +++    D++VV+ F       C  +   +  +AE          V+  
Sbjct: 4   LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT 63

Query: 160 EHKSMCYSLNVH-VLPFFRFYRGAHGRVCSFSCTNATIKKFKD 201
           E         ++       F+R  H  +   +  N  I    +
Sbjct: 64  EVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAME 106

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCY 166
             +V++   AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  + +K++  
Sbjct: 17  WPIVKA---AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAK 73

Query: 167 SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            L + V+P F+  +     V     T A   K  +A+   
Sbjct: 74  ELGIRVVPTFKILKE--NSVVG-EVTGAKYDKLLEAIQAA 110

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 100 NMREVASAQDLVESLWHA--GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN 157
            +    + +   E L  A     LVVVDF +  CG C+ + P    LA+  P+V FL+V+
Sbjct: 7   QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVD 66

Query: 158 YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            +E KS+     +  +P F F +   G++       A   + +  +AKH
Sbjct: 67  TDELKSVASDWAIQAMPTFMFLKE--GKILD-KVVGAKKDELQSTIAKH 112

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 100 NMREVASAQDLVESLWHAGD--KLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQV 156
           ++  + S       L    +  K +VVDF +  CG CK + P    L+      V FL+V
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62

Query: 157 NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 208
           + +   ++  +  +  +P F  Y+   G         A+  K K  +AKH  
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKD--GVKAD-DLVGASQDKLKALVAKHAA 111

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 6/83 (7%), Positives = 20/83 (24%)

Query: 97  LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156
            +  +        L E L     +  ++      C  C+     +     + P+++   +
Sbjct: 32  FRQKLESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAII 91

Query: 157 NYEEHKSMCYSLNVHVLPFFRFY 179
           +    +                 
Sbjct: 92  SKGRAEDDLRQRLALERIAIPLV 114

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 90  QRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP 149
           QR   +G QP       A  + + +   GD ++++                I +L    P
Sbjct: 6   QRLLTRGWQP-----VEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP 60

Query: 150 DVQ--FLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181
                    + E+ +++    NV   P    +  
Sbjct: 61  QFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTD 94

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.1 bits (106), Expect = 4e-07
 Identities = 13/72 (18%), Positives = 28/72 (38%)

Query: 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY 166
           AQ L+E +           ++S  C  C  +   +  +A +NP ++   ++    ++   
Sbjct: 3   AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEIT 62

Query: 167 SLNVHVLPFFRF 178
             NV  +P    
Sbjct: 63  ERNVMGVPAVFV 74

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
           D  ++VDF++  CG CK + P + ++A E    +   ++N +++        +  +P   
Sbjct: 20  DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79

Query: 178 FYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            ++   G V +      +  + K+ L  +
Sbjct: 80  LFKN--GEVAATKVGALSKGQLKEFLDAN 106

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (107), Expect = 6e-07
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 90  QRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP 149
           QR   +G  P      S   L + L  A D +V++                I +L    P
Sbjct: 12  QRMLARGWTP-----VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP 66

Query: 150 DVQ--FLQVNYEEHKSMCYSLNVHVLPFFRFYR 180
           D        + E+ +++     V   P    + 
Sbjct: 67  DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 45.2 bits (106), Expect = 7e-07
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 95  KGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFL 154
           +   P++ +V S +     +  + D L V  F +  CG CK +   + ++A   P V+F 
Sbjct: 4   RARYPSVVDVYSVEQFRNIM--SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFA 61

Query: 155 QVNYEEHKSMCYSLNVHVLPFFRFYRG 181
           +V+ + +  +     V  LP F   R 
Sbjct: 62  KVDADNNSEIVSKCRVLQLPTFIIARS 88

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF 175
            GDK V+VDF++  CG C+ + P + + AE + D V   ++N +E+        +  +P 
Sbjct: 15  QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74

Query: 176 FRFYRG 181
              ++G
Sbjct: 75  LILFKG 80

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKIC--QLAEMNPDVQFLQVNYEEHKSMC-------YS 167
                 VV F      G K            +   D+    V  +++  +        Y 
Sbjct: 17  ERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 76

Query: 168 LNVHVLPFFRFYRGAHGRVCSFSCTNA-TIKKFKDALAKHTPDRCG 212
           ++    P    ++G              T+   K  ++ +TP   G
Sbjct: 77  VDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLYIG 122

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
               V+VDF++P CG C+ + P + ++  E    ++ +++N +E  ++     +  +P  
Sbjct: 18  SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTI 77

Query: 177 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
             ++G   +  +              + K+
Sbjct: 78  MVFKG-GKKCETIIGAV-PKATIVQTVEKY 105

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKI----CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172
           A  K ++V+F++P CG CKAL P+      +L     +++  +V+  E   +     V  
Sbjct: 22  AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG 81

Query: 173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207
            P  +F+R                    + L K T
Sbjct: 82  YPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 38.8 bits (89), Expect = 8e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176
            +  V+VDF++P CG CK + P I +L  E +  +   ++N +E   +    N+  +P  
Sbjct: 16  SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTV 75

Query: 177 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
            F++    R  S            D++ K+
Sbjct: 76  LFFKN-GERKESIIGAV-PKSTLTDSIEKY 103

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ-FLQVNYEEHKSMCYSLNVHVLPFF 176
            ++ V+V F++  CG C+ + P I   A    D    +++  + + +      V  +P  
Sbjct: 19  AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL 78

Query: 177 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 206
           R  +G   ++   +    +  K    L  H
Sbjct: 79  RLVKG--EQILDSTEGVISKDKLLSFLDTH 106

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 5/78 (6%)

Query: 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI-----CQLAEMNPDVQFLQVNYEEHKS 163
           +  +++ +    + ++ F +P C  C                     +    V   E+  
Sbjct: 5   ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 64

Query: 164 MCYSLNVHVLPFFRFYRG 181
                NV  +P       
Sbjct: 65  WADQYNVMAVPKIVIQVN 82

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFL---QVNYEEHKSMCYSLNVHVLP 174
             K V+++F++P CG CKAL PK  +L  +    +F     +   +  +      +   P
Sbjct: 19  DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFP 78

Query: 175 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH 206
             + Y  GA G+  ++S  + T++     +A++
Sbjct: 79  TIKLYPAGAKGQPVTYS-GSRTVEDLIKFIAEN 110

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 11/66 (16%), Positives = 21/66 (31%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177
            +K V+  F    CG C  LH ++     +   V++L    +   S        +     
Sbjct: 25  QEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKD 84

Query: 178 FYRGAH 183
             +   
Sbjct: 85  KNKAFD 90

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 118 GDKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCY 166
           G+K  ++ F+S  C  CK   P++ +   +    +  + V+    +    
Sbjct: 28  GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLD 77

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 7/84 (8%)

Query: 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYE-- 159
           EV +     E+L     +          C  C+     +  +  E    + F+       
Sbjct: 12  EVTTVVRAQEAL--DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQ 69

Query: 160 --EHKSMCYSLNVHVLPFFRFYRG 181
             + ++      +  +P F     
Sbjct: 70  LNDLQAFRSRYGIPTVPGFVHITD 93

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 121 LVVVDFFSPGCGGCKALHPKI-CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179
           + +  F SP C  C      +     E    +   +++    +       +  +P     
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAE--------MNPDVQFLQVNYEEHKSMC--Y 166
              K V+V F +    G K    K  +LAE        +  +V       + +  +   Y
Sbjct: 19  PKSKFVLVKFDTQYPYGEKQDEFK--RLAENSASSDDLLVAEVGISDYGDKLNMELSEKY 76

Query: 167 SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207
            L+    P F  +R               +   +  L    
Sbjct: 77  KLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG 117

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 120 KLVVVDFFSPGCGGCKAL-HPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178
           K+ +  F SP C  C A          EM   V+   +N  E+        +  +P    
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62

Query: 179 YRG 181
              
Sbjct: 63  NGD 65

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 17/108 (15%)

Query: 119 DKLVVVDFFSPGCGGCKALHPKICQLAE---MNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175
              ++V      CG CKAL PK  +  E   ++ +   + +  EE               
Sbjct: 25  GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIP 84

Query: 176 FRFYRGAHGRVCSFSCTNAT--------------IKKFKDALAKHTPD 209
              +    G+V                       ++  K+A  + T D
Sbjct: 85  RILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGD 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.91
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.9
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.9
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.9
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.9
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.9
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.89
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.89
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.89
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.89
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.89
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.88
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.88
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.86
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.85
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.8
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.8
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.8
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.8
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.79
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.79
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.78
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.77
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.77
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.77
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.75
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.74
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.7
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.65
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.53
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.52
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.5
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.43
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.41
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.4
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.37
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.33
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.32
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.29
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.27
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.24
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.24
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.16
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.15
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.99
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.42
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.33
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.26
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.23
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.17
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.13
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.05
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.01
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.96
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.94
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.9
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.89
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.89
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.83
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.78
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.77
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.75
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.72
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	97.7
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.64
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.64
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.61
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.58
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.53
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.51
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.48
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.45
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.41
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.4
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.35
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.3
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.26
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.19
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.19
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.17
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.13
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.06
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.83
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.82
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.73
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.25
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	95.99
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	94.96
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	92.06
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	91.74
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	89.57
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	88.84
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	84.17

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-24  Score=166.19  Aligned_cols=104  Identities=32%  Similarity=0.581  Sum_probs=94.9

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      |.+|.+.++|++.+..+++++|+|+|||+||++|+.+.|.+.+++++++++.|++||+|++++++++|+|+++||+++|+
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~   81 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK   81 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCceEEEEEEEEE
Confidence            67899999999999877789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|+ .+..+. | .+.++|+++|++++
T Consensus        82 ~G~-~v~~~~-G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          82 KGQ-KVGEFS-G-ANKEKLEATINELV  105 (105)
T ss_dssp             TTE-EEEEEE-S-CCHHHHHHHHHHHC
T ss_pred             CCE-EEEEEe-C-CCHHHHHHHHHhhC
Confidence            997 454444 4 57899999999864

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=167.54  Aligned_cols=105  Identities=26%  Similarity=0.521  Sum_probs=96.6

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      .|..|.+.++|++.+..+++++++|+|||+||++|+.+.|.+++++++|+++.|++||++++++++++|+|.++||+++|
T Consensus         2 ~v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~   81 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcCceeceEEEEE
Confidence            47789999999999987789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. | .+.++|.++|++++
T Consensus        82 ~~G~-~v~~~~-G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          82 RNKV-RIDQYQ-G-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             ETTE-EEEEEE-S-SCHHHHHHHHHHHH
T ss_pred             ECCE-EEEEEe-C-CCHHHHHHHHHHhh
Confidence            9997 455554 4 68999999999985

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.7e-23  Score=163.62  Aligned_cols=107  Identities=31%  Similarity=0.548  Sum_probs=96.0

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      ...+.+|.+.++|+..+...++++|+|+|||+||++|+.+.|.+++++++|++ +.++.||++++++++++|+|+++||+
T Consensus         4 ~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~   83 (111)
T d1xwaa_           4 AAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTF   83 (111)
T ss_dssp             SCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEE
Confidence            34678899999999999877899999999999999999999999999999986 89999999999999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+. | .+.++|+++|++++
T Consensus        84 ~~~~~G~-~v~~~~-G-~~~~~l~~~I~~~l  111 (111)
T d1xwaa_          84 VFLKNGV-KVEEFA-G-ANAKRLEDVIKANI  111 (111)
T ss_dssp             EEEETTE-EEEEEE-S-CCHHHHHHHHHHTC
T ss_pred             EEEECCE-EEEEEe-C-CCHHHHHHHHHhcC
Confidence            9999987 455544 4 56789999999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.90  E-value=7.4e-24  Score=166.50  Aligned_cols=107  Identities=28%  Similarity=0.437  Sum_probs=96.0

Q ss_pred             CCCeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .++++.+++.++|++.+..  ..+++|||+|||+||++|+.+.|.|++++++++++.|+.||+|++++++++|+|+++||
T Consensus         3 ~g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt   82 (113)
T d1ti3a_           3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CCcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCeecccce
Confidence            4689999999999988763  46899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|++|+ .+..+. | .+.++|.++|++|+
T Consensus        83 ~~~~k~G~-~v~~~~-G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          83 FIFLKDGK-LVDKTV-G-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTE-EEEEEE-C-CCTTHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEc-C-CCHHHHHHHHHHHh
Confidence            99999987 344443 4 68899999999985

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.8e-23  Score=164.62  Aligned_cols=107  Identities=27%  Similarity=0.459  Sum_probs=96.6

Q ss_pred             CCCeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      .++++.+.+.++|++.+..  ..++++||+|||+||++|+.+.|.++++++.|+++.|+.||++++++++++|+|+++||
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~~Pt   84 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPT   84 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccceeeeEE
Confidence            4578999999999988863  56899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +++|++|+ .+..+. | .+.++|+++|++++
T Consensus        85 ~~~~~~G~-~v~~~~-G-~~~~~l~~~i~k~l  113 (114)
T d1xfla_          85 FMFLKEGK-ILDKVV-G-AKKDELQSTIAKHL  113 (114)
T ss_dssp             EEEEETTE-EEEEEE-S-CCHHHHHHHHHHHC
T ss_pred             EEEEECCE-EEEEEe-C-cCHHHHHHHHHHhh
Confidence            99999997 454444 4 57899999999986

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.90  E-value=1.6e-23  Score=164.51  Aligned_cols=107  Identities=24%  Similarity=0.389  Sum_probs=95.9

Q ss_pred             CCeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCc
Q 022923           99 PNMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ++|..|++.++|++.+..  ..+++|||+|||+||++|+.+.|.|+++++++++ +.|+.||++++++++++|+|+++||
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   81 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCE
Confidence            578999999999998873  3579999999999999999999999999999975 9999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +++|++|+ .+..+. | .+.++|+++|++|+.
T Consensus        82 ~~~~~~G~-~v~~~~-G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          82 FHVYKDGV-KADDLV-G-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEETTE-EEEEEE-S-CCHHHHHHHHHHHHC
T ss_pred             EEEEECCE-EEEEEe-C-cCHHHHHHHHHHHhC
Confidence            99999987 455554 4 689999999999863

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.90  E-value=2e-23  Score=161.20  Aligned_cols=102  Identities=24%  Similarity=0.434  Sum_probs=92.2

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      +..|+|.++|++.+.  ++++++|+||++||++|+.+.|.+++++++|+++.|+.+|++++++++++|+|.++||+++|+
T Consensus         2 v~~i~s~~~f~~~i~--~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k   79 (103)
T d1syra_           2 VKIVTSQAEFDSIIS--QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYK   79 (103)
T ss_dssp             CEEECSHHHHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred             cEEeCCHHHHHHHHh--CCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeeeecceEEEEEE
Confidence            567899999999984  578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|+ .+..+. | .+.++|.++|++|+
T Consensus        80 ~G~-~v~~~~-G-~~~~~l~~~i~k~a  103 (103)
T d1syra_          80 NGS-SVDTLL-G-ANDSALKQLIEKYA  103 (103)
T ss_dssp             TTE-EEEEEE-S-CCHHHHHHHHHTTC
T ss_pred             CCE-EEEEEe-C-cCHHHHHHHHHhhC
Confidence            987 444544 4 57899999999874

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.89  E-value=2.7e-23  Score=163.66  Aligned_cols=106  Identities=22%  Similarity=0.310  Sum_probs=94.1

Q ss_pred             CCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923           97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        97 ~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      ..|.++++++.++|.+.+  .++++++|+|||+||++|+.+.|.|++++++++++.|++||+|++++++++|+|.++||+
T Consensus         6 ~~p~vi~i~s~~~~~~~~--~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~   83 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIM--SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTF   83 (113)
T ss_dssp             CCSCCEEECCHHHHHHHH--HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCceEEeCCHHHHHHHH--cCCCeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHccccCCCEE
Confidence            356899999999999998  468899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+. | .+.+.+.+.|++.+
T Consensus        84 ~~~~~G~-~v~~~~-G-~~~~~l~~~l~~~i  111 (113)
T d1r26a_          84 IIARSGK-MLGHVI-G-ANPGMLRQKLRDII  111 (113)
T ss_dssp             EEEETTE-EEEEEE-S-SCHHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEe-C-CCHHHHHHHHHHHh
Confidence            9999997 444444 4 46788888887654

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.89  E-value=3.5e-23  Score=159.67  Aligned_cols=103  Identities=23%  Similarity=0.437  Sum_probs=90.4

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      |.+|++ ++|++.+.. ++++|+|+|||+||++|+.+.|.+.++++++.+ +.++.||++++++++++|+|+++||+++|
T Consensus         1 v~el~d-~~f~~~v~~-~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVND-SSWKEFVLE-SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCT-TTHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECch-hhHHHHHHc-CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            356666 578887754 588999999999999999999999999999865 89999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. |..+.++|.++|++++
T Consensus        79 ~~G~-~v~~~~-G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNGE-RKESII-GAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETTE-EEEEEE-ECCCHHHHHHHHHHHC
T ss_pred             EcCe-EEEEEe-CCCCHHHHHHHHHHhC
Confidence            9986 444444 8899999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.89  E-value=6.3e-23  Score=159.10  Aligned_cols=103  Identities=16%  Similarity=0.361  Sum_probs=90.7

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +..|+ .++|++.+.. ++++|||+|||+||++|+.+.|.+.++++++. ++.|+.||+|++++++++|+|+++||+++|
T Consensus         3 ~~~i~-~~~f~~~v~~-s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVN-DDTFKNVVLE-SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEEC-HHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEec-HHHHHHHHHh-CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEE
Confidence            34454 5789888764 58999999999999999999999999999875 699999999999999999999999999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++|+ .+..+. |..+.++|.++|++++
T Consensus        81 ~~G~-~v~~~~-G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          81 KGGK-KCETII-GAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSSS-EEEEEE-SCCCHHHHHHHHHHHC
T ss_pred             ECCe-EEEEEe-CCCCHHHHHHHHHHhh
Confidence            9987 455554 8899999999999986

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.1e-23  Score=159.74  Aligned_cols=104  Identities=13%  Similarity=0.337  Sum_probs=91.5

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      +|+++++ ++|++.+.. .+++|+|+|||+||++|+.+.|.+.+++.++ .++.++.+|+|+++.++++|+|.++||+++
T Consensus         3 ~v~~lt~-~~f~~~v~~-~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~   80 (108)
T d2trxa_           3 KIIHLTD-DSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TEEECCT-TTHHHHTTT-CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred             CceECCH-HHHHHHHHh-CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEE
Confidence            5778876 688887654 5899999999999999999999999999886 469999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+ .+..+ .|.++.++|.++|++++
T Consensus        81 ~~~G~-~v~~~-~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          81 FKNGE-VAATK-VGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EETTE-EEEEE-ESCCCHHHHHHHHHHHH
T ss_pred             EECCE-EEEEE-eCCCCHHHHHHHHHHhc
Confidence            99986 44444 48899999999999875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.89  E-value=6.5e-23  Score=159.30  Aligned_cols=104  Identities=17%  Similarity=0.340  Sum_probs=91.6

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  178 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~  178 (290)
                      .++++++ ++|++.+.. .+++++|+|||+||++|+.+.|.|++++.++++ +.|+.||+|++++++++|+|+++||+++
T Consensus         3 ~V~~lt~-~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~   80 (108)
T d1thxa_           3 GVITITD-AEFESEVLK-AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL   80 (108)
T ss_dssp             SEEECCG-GGHHHHTTT-CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred             CceECCH-HHHHHHHHh-CCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEE
Confidence            4777855 688887754 578999999999999999999999999999975 8999999999999999999999999999


Q ss_pred             EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          179 YRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|+ .+..+. |..+.++|.++|++++
T Consensus        81 ~~~g~-~v~~~~-G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          81 VKGEQ-ILDSTE-GVISKDKLLSFLDTHL  107 (108)
T ss_dssp             EETTE-EEEEEE-SCCCHHHHHHHHHHHH
T ss_pred             EECCE-EEEEEe-CCCCHHHHHHHHHHhc
Confidence            99886 444444 8899999999999875

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.88  E-value=2e-22  Score=158.30  Aligned_cols=105  Identities=31%  Similarity=0.504  Sum_probs=91.9

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-cHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~~~l~~~~~I~~~PT~  176 (290)
                      .+.+.+++. ++|.+.+..+++++|+|+||++||++|+.+.|.|++++++|+++.|+.+|+++ +++++++|+|+++||+
T Consensus         5 ~g~v~~~~~-d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V~~~Pt~   83 (112)
T d1f9ma_           5 VGKVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF   83 (112)
T ss_dssp             TTSEEEECT-TTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEE
T ss_pred             ceeeEEeCH-HHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchhhHhheeeccCCEE
Confidence            456778855 57999988777899999999999999999999999999999999999999975 8999999999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      ++|++|+ .+..+. | .+.+++.++|+++
T Consensus        84 ~~~k~G~-~v~~~~-G-~~~~~l~e~i~~~  110 (112)
T d1f9ma_          84 KILKENS-VVGEVT-G-AKYDKLLEAIQAA  110 (112)
T ss_dssp             EEEETTE-EEEEEE-S-SCHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEe-C-CCHHHHHHHHHHc
Confidence            9999987 444444 4 5778999999876

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.88  E-value=7e-23  Score=158.33  Aligned_cols=101  Identities=22%  Similarity=0.468  Sum_probs=88.8

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      .++++ ++|++.+  +++++++|+|||+||++|+.+.|.+++++++|++ +.|++||+++++.++++|+|.++||+++|+
T Consensus         3 i~lt~-~~f~~~i--~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~   79 (105)
T d1nw2a_           3 MTLTD-ANFQQAI--QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             EEECT-TTHHHHT--TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEECH-HHHHHHH--hCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEE
Confidence            34544 6788877  5689999999999999999999999999999864 999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|+ .+..+ .|..+.++|+++|++++
T Consensus        80 ~G~-~~~~~-~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          80 GGE-PVKQL-IGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TTE-EEEEE-ESCCCHHHHHHHTTTTC
T ss_pred             CCE-EEEEE-ECCCCHHHHHHHHHHHh
Confidence            987 44444 48899999999998875

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.2e-21  Score=154.86  Aligned_cols=107  Identities=20%  Similarity=0.470  Sum_probs=92.1

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCc
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ...+++++. ++|++.+  .+++.+||+||++||++|+.+.|.|+++++.+.  ++.|++||++++.+++.+|+|.++||
T Consensus         9 ~s~v~~lt~-~~f~~~i--~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   85 (119)
T d2b5ea4           9 DSAVVKLAT-DSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS   85 (119)
T ss_dssp             TSSCEECCT-TTHHHHH--TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCccEEcCH-HHHHHHH--hcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCe
Confidence            345777655 6798887  467899999999999999999999999999884  59999999999999999999999999


Q ss_pred             eEEEeCCCc-eeeeecCCccCHHHHHHHHHhhCC
Q 022923          176 FRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       176 ~~~~~~G~~-~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      +++|++|+. ....|. |.++.++|++||+++++
T Consensus        86 i~~f~~g~~~~~~~y~-g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          86 LKIFKNSDVNNSIDYE-GPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             EEEEETTCTTCEEECC-SCCSHHHHHHHHHHHTS
T ss_pred             EEEEECCEEeeeEEec-CCCCHHHHHHHHHHhhC
Confidence            999999872 223344 78999999999999864

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.9e-22  Score=160.28  Aligned_cols=104  Identities=11%  Similarity=0.131  Sum_probs=89.1

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      +.++++.++|++.+...++++|||+|||+||++|+.+.|.+++++++|++ +.|++||+|++++++++|+|+++||++||
T Consensus         4 l~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f   83 (137)
T d1qgva_           4 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF   83 (137)
T ss_dssp             SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred             ccccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEE
Confidence            45688999999999987899999999999999999999999999999976 89999999999999999999999999999


Q ss_pred             eCCCceeeeecCCc----------cCHHHHHHHHHhh
Q 022923          180 RGAHGRVCSFSCTN----------ATIKKFKDALAKH  206 (290)
Q Consensus       180 ~~G~~~v~~~~~g~----------~~~~~l~~~L~k~  206 (290)
                      ++|+ .+. ...|.          .+.++|++.|+..
T Consensus        84 ~~g~-~i~-~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          84 FRNK-HIM-IDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             ETTE-EEE-EECC------CCSCCSCHHHHHHHHHHH
T ss_pred             eCCc-EEE-EEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            9998 332 22122          3667777776654

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.6e-22  Score=156.46  Aligned_cols=107  Identities=21%  Similarity=0.388  Sum_probs=90.7

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPF  175 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT  175 (290)
                      ++..+ +.++|++.+.  +++++||+|||+||++|+.+.|.|+++++.+.    ++.+++||++++..++++|+|.++||
T Consensus         8 ~V~~l-~~~~f~~~l~--~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           8 HVLVL-RKSNFAEALA--AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             TEEEC-CTTTHHHHHH--HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CeEEc-CHHHHHHHHh--cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            45555 4578998874  57899999999999999999999999999873    48999999999999999999999999


Q ss_pred             eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++|++|+........|.++.++|.+||+++++.
T Consensus        85 ~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p  118 (120)
T d1meka_          85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            9999998732222234889999999999999754

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.1e-20  Score=144.88  Aligned_cols=101  Identities=11%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCC-------CChHHHHHHHHHHHHHHHCC-CcEEEEEecc-------ccHhHHH
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSP-------GCGGCKALHPKICQLAEMNP-DVQFLQVNYE-------EHKSMCY  166 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~-------WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d-------~~~~l~~  166 (290)
                      +.|.+.++|.+.+...++++|+|+|||+       ||++|+.+.|.++++++.++ ++.|+.||++       .+..+++
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence            5688999999999988889999999995       99999999999999999986 4999999985       4567899


Q ss_pred             hcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          167 SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       167 ~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      +|+|.++||+++|++|+ ++.+..  ..+.+.++.++++
T Consensus        84 ~~~V~~iPT~i~~~~g~-~l~~~~--~~~~~ll~~~~~e  119 (119)
T d1woua_          84 NLKVTAVPTLLKYGTPQ-KLVESE--CLQANLVEMLFSE  119 (119)
T ss_dssp             HHCCCSSSEEEETTSSC-EEEGGG--GGCHHHHHHHHHC
T ss_pred             hCCeEEEEEEEEEECCe-EEeeee--cCCHHHHHHHhcC
Confidence            99999999999999987 666544  4667777777753

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.80  E-value=1.8e-19  Score=138.98  Aligned_cols=98  Identities=14%  Similarity=0.124  Sum_probs=80.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH----C-CCcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM----N-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  182 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~----~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G  182 (290)
                      ++..+.+....++.++++||++||++|+.+.|.+++++..    + .++.+..+|++++++++++|+|.++||+++|++|
T Consensus         4 ~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G   83 (107)
T d1a8la2           4 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG   83 (107)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT
T ss_pred             HHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCC
Confidence            3455555554455566689999999999999999999764    2 3489999999999999999999999999999998


Q ss_pred             CceeeeecCCccCHHHHHHHHHhhC
Q 022923          183 HGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       183 ~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      + .+..+ .|..+.++|.++|.+.+
T Consensus        84 ~-~~~~~-~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          84 E-DRVEF-EGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             E-EEEEE-ESCCCHHHHHHHHHHHH
T ss_pred             e-EEEEE-ECCCCHHHHHHHHHHhh
Confidence            7 34444 48999999999998764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=1.6e-20  Score=149.06  Aligned_cols=100  Identities=11%  Similarity=0.084  Sum_probs=76.7

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      +.+++++.+...++++|+|+||++||++|+.+.|.|.+++++|++  +.++.||+|++++++++|+|+++||+++|++|+
T Consensus        17 ~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G~   96 (119)
T d2es7a1          17 EASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGK   96 (119)
T ss_dssp             CCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC-
T ss_pred             cccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEcCe
Confidence            556788888777889999999999999999999999999999976  788999999999999999999999999999987


Q ss_pred             ceeeeecCCccCHHHHHHHHHhhC
Q 022923          184 GRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                        ......|..+.+++.++|++.+
T Consensus        97 --~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          97 --LRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             -----CEESCCCHHHHHHHHHHHH
T ss_pred             --EEEEeeCCCCHHHHHHHHHHHh
Confidence              3334448899999999998764

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.4e-20  Score=152.15  Aligned_cols=102  Identities=15%  Similarity=0.081  Sum_probs=91.6

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      +.++|++.+....+++|||+|||+||++|+.+.|.|.+++++|++  +.+++||+|++++++++|+|.++||+++|++|+
T Consensus        23 ~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~G~  102 (132)
T d2hfda1          23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN  102 (132)
T ss_dssp             CHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEEETTE
T ss_pred             ccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEEEcCc
Confidence            568999988877788999999999999999999999999999976  678899999999999999999999999999997


Q ss_pred             ceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          184 GRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       184 ~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                        ......|.++.++|.++|++.+..
T Consensus       103 --~v~~~~G~~~~~~l~~~i~~ll~~  126 (132)
T d2hfda1         103 --YRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_dssp             --EEEEECCCSCHHHHHHHHHHHHSC
T ss_pred             --EeeeecCCCCHHHHHHHHHHHhCc
Confidence              444445899999999999988744

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.1e-19  Score=139.68  Aligned_cols=105  Identities=22%  Similarity=0.313  Sum_probs=87.5

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCCCcEEEEEecc----ccHhHHHhcCccc
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHV  172 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~~v~~~~Vd~d----~~~~l~~~~~I~~  172 (290)
                      ++..|.+.++++..+...++|+|||+|||+||++|+.+.|.+   .++.+.+.++.++.+|++    .+.+++++|+|.+
T Consensus         3 ~f~~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~   82 (117)
T d2fwha1           3 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG   82 (117)
T ss_dssp             CCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred             CceEecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhh
Confidence            567899999999999887899999999999999999999998   567777888888888875    3567899999999


Q ss_pred             cCceEEEe-CCCceeee-ecCCccCHHHHHHHHHh
Q 022923          173 LPFFRFYR-GAHGRVCS-FSCTNATIKKFKDALAK  205 (290)
Q Consensus       173 ~PT~~~~~-~G~~~v~~-~~~g~~~~~~l~~~L~k  205 (290)
                      +||++||+ +|+ .+.. ...|..+.++|.++|++
T Consensus        83 ~Pt~~~~~~~G~-~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          83 LPTILFFDGQGQ-EHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             SSEEEEECTTSC-BCGGGCBCSCCCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCc-EEecccccccCCHHHHHHHHhc
Confidence            99999995 454 2322 23477999999999975

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.79  E-value=3.4e-19  Score=141.59  Aligned_cols=105  Identities=11%  Similarity=0.104  Sum_probs=86.2

Q ss_pred             CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHH------HHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCc
Q 022923           99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGC------KALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNV  170 (290)
Q Consensus        99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~C------k~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I  170 (290)
                      ..+++++ .++|++.+.  +++.++|+||||||++|      ..+.+.++.+++.+.  ++.|++|||+++.++|++|+|
T Consensus        11 ~~V~~L~-~~nf~~~l~--~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I   87 (124)
T d1a8ya1          11 DRVINVN-AKNYKNVFK--KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL   87 (124)
T ss_dssp             CCCEECC-TTTHHHHHH--HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTC
T ss_pred             CccEECC-HHHHHHHHH--hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccc
Confidence            3466666 468999885  46789999999999964      455556666666553  499999999999999999999


Q ss_pred             cccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923          171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       171 ~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~  209 (290)
                      +++||+++|++|+  ...|. |.++.+.|.+||.+.+.+
T Consensus        88 ~~yPTi~~f~~g~--~~~y~-G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          88 TEEDSIYVFKEDE--VIEYD-GEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             CSTTCEEEEESSS--EEECC-SCCSHHHHHHHHHHHHSC
T ss_pred             ccCCcEEEeccCc--cEEee-CCCCHHHHHHHHHHhcCC
Confidence            9999999999987  56676 889999999999988643

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=4e-20  Score=137.27  Aligned_cols=83  Identities=20%  Similarity=0.286  Sum_probs=74.7

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHH
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK  197 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~  197 (290)
                      +|..|++|||+||++|+.+.|.++++++.+++ +.+..+|++++++++++|+|+++||++++++|+  .    .|..+.+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~--~----~G~~~~~   75 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE--F----IGAPTKE   75 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE--C----CSSSSSH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE--E----ECCCCHH
Confidence            57889999999999999999999999999975 899999999999999999999999999886653  2    3788999


Q ss_pred             HHHHHHHhhC
Q 022923          198 KFKDALAKHT  207 (290)
Q Consensus       198 ~l~~~L~k~~  207 (290)
                      +|.++|++++
T Consensus        76 ~l~~~i~~~L   85 (85)
T d1fo5a_          76 ALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999999874

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.77  E-value=5.1e-20  Score=143.88  Aligned_cols=106  Identities=20%  Similarity=0.367  Sum_probs=82.8

Q ss_pred             CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC---cEEEEEeccccHhHHHhcCccccCce
Q 022923          100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus       100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~---v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .|..++ .++|++.+. .+++++||+|||+||++|+++.|.|+++++.+.+   ..+..+++++...++.+++|+++||+
T Consensus         3 ~V~~lt-~~nF~~~v~-~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti   80 (116)
T d2djja1           3 PVTVVV-AKNYNEIVL-DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI   80 (116)
T ss_dssp             SSEECC-TTTTTTSSS-CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEE
T ss_pred             CcEEcc-cCCHHHHHh-cCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEE
Confidence            445555 468888765 3688999999999999999999999999998754   22344555555566788999999999


Q ss_pred             EEEeCCCc-eeeeecCCccCHHHHHHHHHhhCC
Q 022923          177 RFYRGAHG-RVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       177 ~~~~~G~~-~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ++|++|+. ....+. |.++.++|.+||+++..
T Consensus        81 ~~f~~g~~~~~~~~~-g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          81 KLYPAGAKGQPVTYS-GSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             EEECSSCTTSCCCCC-CCSCHHHHHHHHHHTSS
T ss_pred             EEEECCccCceEEec-CCCCHHHHHHHHHHccC
Confidence            99988862 233444 78999999999999864

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.4e-19  Score=145.19  Aligned_cols=106  Identities=18%  Similarity=0.340  Sum_probs=86.1

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCcccc
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVL  173 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~  173 (290)
                      ...|.++++ ++|++.+.. .+++|||+|||+||++|+.+.|.|+++++.|.    .+.++.+|++  ..++++|+|+++
T Consensus        11 ~~~V~~l~~-~nf~~~v~~-~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~   86 (140)
T d2b5ea1          11 DSSVFQLVG-KNHDEIVND-PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGY   86 (140)
T ss_dssp             SCSEEEECT-TTHHHHHHC-TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSS
T ss_pred             CCCcEEecC-cCHHHHHhc-CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccC
Confidence            456888866 689988864 57899999999999999999999999998764    3666666654  457999999999


Q ss_pred             CceEEEeCCCc-eeeeecCCccCHHHHHHHHHhhCC
Q 022923          174 PFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTP  208 (290)
Q Consensus       174 PT~~~~~~G~~-~v~~~~~g~~~~~~l~~~L~k~~~  208 (290)
                      ||+++|++|+. ....|. |.++.+.|.+||+++..
T Consensus        87 Ptl~~f~~g~~~~~~~y~-G~~t~~~l~~fi~~~~~  121 (140)
T d2b5ea1          87 PTIVLYPGGKKSESVVYQ-GSRSLDSLFDFIKENGH  121 (140)
T ss_dssp             SEEEEECCTTSCCCCBCC-SCCCHHHHHHHHHHHCT
T ss_pred             CeEEEEECCEEcceeEeC-CCCCHHHHHHHHHHcCC
Confidence            99999998872 122343 78999999999999863

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=9.7e-19  Score=138.69  Aligned_cols=104  Identities=15%  Similarity=0.219  Sum_probs=84.7

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH----CCCcEEEEEecc-----ccHhHHHhcCc-
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYE-----EHKSMCYSLNV-  170 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~----~~~v~~~~Vd~d-----~~~~l~~~~~I-  170 (290)
                      ++++++ ++|++.+  .+++.+||+|||+||++|+.  |.|.++++.    ..++.+++|||+     ++.+++++|+| 
T Consensus         4 ~v~L~~-~nFd~~v--~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~   78 (122)
T d2c0ga2           4 CVDLDE-LSFEKTV--ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD   78 (122)
T ss_dssp             CEECCT-TTHHHHH--TTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC
T ss_pred             eEEcCh-HhHHHHH--hcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcc
Confidence            445555 6799999  56799999999999999994  899988875    357999999986     46899999988 


Q ss_pred             -cccCceEEEeCCCceeeeec-CCccCHHHHHHHHHhhCCC
Q 022923          171 -HVLPFFRFYRGAHGRVCSFS-CTNATIKKFKDALAKHTPD  209 (290)
Q Consensus       171 -~~~PT~~~~~~G~~~v~~~~-~g~~~~~~l~~~L~k~~~~  209 (290)
                       +++||+++|++|+.....+. .|.++.++|.+||+++.+.
T Consensus        79 ~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          79 DKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             TTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             cCCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence             57999999998874433332 3779999999999999753

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.75  E-value=2.8e-18  Score=134.48  Aligned_cols=99  Identities=11%  Similarity=0.153  Sum_probs=81.5

Q ss_pred             eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccc----cHhHHHhcCccccCce
Q 022923          102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE----HKSMCYSLNVHVLPFF  176 (290)
Q Consensus       102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~----~~~l~~~~~I~~~PT~  176 (290)
                      .++.+.+++.+.+  +++++++|+||++||++|+.+.|.|.+++++++. +.++.+|...    ..+++++|+|.++||+
T Consensus        11 ~~~~t~~~~~~~i--~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl   88 (115)
T d1zmaa1          11 LEVTTVVRAQEAL--DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF   88 (115)
T ss_dssp             SEECCHHHHHHHH--HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred             eeeCCHHHHHHHH--hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEE
Confidence            4567888999998  4688999999999999999999999999988753 6665555433    2468899999999999


Q ss_pred             EEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923          177 RFYRGAHGRVCSFSCTNATIKKFKDALA  204 (290)
Q Consensus       177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~  204 (290)
                      ++|++|+  +.....|..+.++|.+||.
T Consensus        89 i~~~~gk--~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          89 VHITDGQ--INVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEETTE--EEEECCTTCCHHHHHHHHT
T ss_pred             EEEECCE--EEEEEcCCCCHHHHHHHHc
Confidence            9999987  4444458899999999974

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=6.7e-18  Score=128.58  Aligned_cols=92  Identities=15%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCcee
Q 022923          107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV  186 (290)
Q Consensus       107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v  186 (290)
                      .+++.+.+..-.+...++.||++||++|+.+.|.++++++.++++.|..||++++++++++|+|+++||+++  +|+  .
T Consensus         3 ~~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~--~   78 (96)
T d1hyua4           3 AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGK--E   78 (96)
T ss_dssp             CHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTE--E
T ss_pred             hHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcccccccEEEE--CCE--E
Confidence            356777776656777899999999999999999999999999999999999999999999999999999754  776  3


Q ss_pred             eeecCCccCHHHHHHHHH
Q 022923          187 CSFSCTNATIKKFKDALA  204 (290)
Q Consensus       187 ~~~~~g~~~~~~l~~~L~  204 (290)
                      . +. |.++.++|+++|+
T Consensus        79 ~-~~-G~~~~~~l~~~le   94 (96)
T d1hyua4          79 F-GQ-GRMTLTEIVAKVD   94 (96)
T ss_dssp             E-EE-SCCCHHHHHHHHC
T ss_pred             E-Ee-cCCCHHHHHHHHh
Confidence            2 33 7899999998875

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=7.2e-18  Score=125.31  Aligned_cols=80  Identities=13%  Similarity=0.200  Sum_probs=70.1

Q ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHH
Q 022923          122 VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK  200 (290)
Q Consensus       122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~  200 (290)
                      .++.|||+||++|+.+.|.|++++++|++ +.|+.+|++++++++++|+|.++||+++  +|+++   +. |..+.++|+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~~---~~-G~~~~~~l~   77 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVVR---FV-GAPSREELF   77 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTEE---EE-CSSCCHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCcEE---EE-cCCCHHHHH
Confidence            35569999999999999999999999864 9999999999999999999999999876  55522   33 788999999


Q ss_pred             HHHHhhC
Q 022923          201 DALAKHT  207 (290)
Q Consensus       201 ~~L~k~~  207 (290)
                      ++|++++
T Consensus        78 ~~i~~~l   84 (85)
T d1nhoa_          78 EAINDEM   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999875

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=5.8e-17  Score=140.95  Aligned_cols=108  Identities=19%  Similarity=0.331  Sum_probs=90.5

Q ss_pred             CCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923           98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  176 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~  176 (290)
                      .+.+.+|.+.++|.+.+... .+..|||+||++||++|+.|.|.|.+|+.+|++++|++||++..+ +..+|+|.++|||
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-~~~~~~i~~lPtl  176 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-AGDRFSSDVLPTL  176 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-CSTTSCGGGCSEE
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccch-hHHhCCCCCCCeE
Confidence            46799999999999998753 356899999999999999999999999999999999999998764 6689999999999


Q ss_pred             EEEeCCCceeeeec------CCccCHHHHHHHHHhhC
Q 022923          177 RFYRGAHGRVCSFS------CTNATIKKFKDALAKHT  207 (290)
Q Consensus       177 ~~~~~G~~~v~~~~------~g~~~~~~l~~~L~k~~  207 (290)
                      ++|++|+ .+..+.      ....+.+.|..+|.++-
T Consensus       177 ~~yk~G~-~v~~~vg~~~~~g~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         177 LVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEECCE-EEEEEECccccccccCCHHHHHHHHHHcC
Confidence            9999997 333322      11246788999888873

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.5e-17  Score=128.93  Aligned_cols=97  Identities=15%  Similarity=0.181  Sum_probs=78.8

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--------cEEEEEeccccHhHHHhc--CccccCc
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--------VQFLQVNYEEHKSMCYSL--NVHVLPF  175 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--------v~~~~Vd~d~~~~l~~~~--~I~~~PT  175 (290)
                      +.++|++.+  .+++.+||+||++||.+|+.  |.+.++++.+.+        |.+..+|++++.++|.+|  +|+++||
T Consensus        10 ~~~nFd~~i--~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPT   85 (122)
T d1g7ea_          10 DTVTFYKVI--PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPV   85 (122)
T ss_dssp             SHHHHHHHG--GGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEE
T ss_pred             CHHhHHHHH--hhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCe
Confidence            447899888  46899999999999988874  788888887632        445556788899999986  5889999


Q ss_pred             eEEEeCCCc-eeeeecCCccCHHHHHHHHHhhC
Q 022923          176 FRFYRGAHG-RVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       176 ~~~~~~G~~-~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |++|++|+. ....|. |.++.+.|.+||+++.
T Consensus        86 i~~f~~G~~~~~~~y~-G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          86 FYLFRDGDFENPVPYS-GAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             EEEEESSCCCCCEEEE-SCCCHHHHHHHHHTTS
T ss_pred             EEEEecCcccCceecC-CCCCHHHHHHHHHhcc
Confidence            999999873 244566 8999999999999984

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=4.9e-14  Score=111.94  Aligned_cols=87  Identities=21%  Similarity=0.301  Sum_probs=72.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~~P  174 (290)
                      .+|++||+||++||++|+...|.+.++.++++++.++.|+.++                       +..+.+.|++.++|
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P  103 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccC
Confidence            5899999999999999999999999999999998888886542                       34688999999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      ++++++..+ ++..+ .|..+.+++.+.|+++
T Consensus       104 ~~~iiD~~G-~i~~~-~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         104 AYAFVDPHG-NVDVV-RGRMSQDELTRRVTAL  133 (134)
T ss_dssp             EEEEECTTC-CEEEE-ESCCCHHHHHHHHHHH
T ss_pred             eEEEECCCC-eEEEE-ECCCCHHHHHHHHHhh
Confidence            999995433 45444 4788999999999875

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=9.3e-15  Score=116.75  Aligned_cols=87  Identities=15%  Similarity=0.206  Sum_probs=66.0

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-----------------------ccHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------------------EHKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------------------~~~~l~~~~~I~~~P  174 (290)
                      ++|+|||+|||+||++|+...|.++++.+..  +.++.++.+                       .+..+.+.|+|.++|
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P   96 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQG--IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP   96 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTT--CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBS
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhhh--hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCcc
Confidence            6899999999999999999999999998764  444444432                       234578999999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++++++..+ ++.....|..+.+++.+.|++.+
T Consensus        97 ~~~liD~~G-~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          97 ETFLIDGNG-IIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             EEEEECTTS-CEEEEEESCCCHHHHHHHTHHHH
T ss_pred             eEEEEcCCC-EEEEEEEcCCCHHHHHHHHHHHH
Confidence            988884433 46555557788887777766553

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=6.6e-14  Score=111.61  Aligned_cols=88  Identities=25%  Similarity=0.402  Sum_probs=72.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc----------------------cHhHHHhcCccccCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----------------------HKSMCYSLNVHVLPF  175 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----------------------~~~l~~~~~I~~~PT  175 (290)
                      .+|+++|+||++||++|+...|.++++.++++++.++.|+.++                      ...+++.|+|.++|+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~  102 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCE
Confidence            5899999999999999999999999999999999999998753                      345788999999999


Q ss_pred             eEEEe-CCCceeeeecCCccCHHHHHHHHHh
Q 022923          176 FRFYR-GAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       176 ~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                      +++++ +|+.+......|..+.++|.+.|++
T Consensus       103 ~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         103 FVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             EEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             EEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            99995 4442222233467899999998875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.43  E-value=1.9e-13  Score=110.03  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec-----------------------cccHhHHHhcCccccC
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~-----------------------d~~~~l~~~~~I~~~P  174 (290)
                      ++|++||+||++||++|+...|.+.++.+.++ +.+..|+.                       |.+..+.+.|+|.++|
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  108 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR-FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  108 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC-ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence            68999999999999999999999999977663 44444432                       2245688999999999


Q ss_pred             ceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      |+++++.. +++.....|..+.+++.+.|++.+
T Consensus       109 ~~~liD~~-G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         109 ETFVVGRE-GTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             EEEEECTT-SBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             eEEEEcCC-CeEEEEEeCCCCHHHHHHHHHHHH
Confidence            99888533 346555558889999888887654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.41  E-value=3.7e-13  Score=107.75  Aligned_cols=90  Identities=14%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc----------------------------ccHhHHH
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE----------------------------EHKSMCY  166 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d----------------------------~~~~l~~  166 (290)
                      .++|++||+|||+||++|+...|.+.++.++++  ++.++.|+.+                            .+..+++
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence            468999999999999999999999999998764  4777766532                            2346789


Q ss_pred             hcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          167 SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       167 ~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .|+|.++|++++++..+ ++.....|..+.+++.++|++..
T Consensus       101 ~~~v~~~P~~~liD~~G-~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDG-DVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             HTTCCSSSEEEEECTTS-CEEEEEESCCCHHHHHHHHHCTT
T ss_pred             HcCCCccCEEEEECCCC-EEEEEEECCCCHHHHHHHHHHHh
Confidence            99999999999994332 46666668899999999998764

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.40  E-value=4.7e-13  Score=108.35  Aligned_cols=71  Identities=14%  Similarity=0.341  Sum_probs=57.8

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEecccc------------------------HhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~------------------------~~l~~~~~I  170 (290)
                      ++|+|+|+|||+||++|+...|.+.++.++|.   ++.++.|+.|+.                        ..+.+.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            68999999999999999999999999988874   478888877642                        236788999


Q ss_pred             cccCceEEEeCCCceeee
Q 022923          171 HVLPFFRFYRGAHGRVCS  188 (290)
Q Consensus       171 ~~~PT~~~~~~G~~~v~~  188 (290)
                      .++||+++++..++++..
T Consensus       107 ~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         107 KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCcCEEEEEeCCCCEEEe
Confidence            999999999753234543

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=1.3e-12  Score=104.88  Aligned_cols=89  Identities=16%  Similarity=0.418  Sum_probs=71.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccc---------------------------cHhHHHhc
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE---------------------------HKSMCYSL  168 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~---------------------------~~~l~~~~  168 (290)
                      .++|+++|+||++||++|+...|.+.++.++|++ +.++.|+++.                           ...+++.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            3689999999999999999999999999999864 7888886531                           22478889


Q ss_pred             CccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          169 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       169 ~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      +|.++|++++++.. +++.....|..+.+++.+.|+++
T Consensus       107 ~v~~~P~~~~id~~-G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1         107 ENEYVPAYYVFDKT-GQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             CCCCSSEEEEECTT-CBEEEEEESCSTTHHHHHHHHHH
T ss_pred             CCCcCCEEEEECCC-CEEEEEEECCCCHHHHHHHHHhC
Confidence            99999998888433 24655555888889999888763

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.33  E-value=1.8e-12  Score=104.47  Aligned_cols=72  Identities=15%  Similarity=0.360  Sum_probs=58.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEecccc------------------------HhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~------------------------~~l~~~~~I  170 (290)
                      .+|+|+|+|||+||++|+...|.+.++.++|.   ++.++.|+.|+.                        ..+.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            68999999999999999999999999998873   488888887631                        247789999


Q ss_pred             cccCceEEEeCCCceeeee
Q 022923          171 HVLPFFRFYRGAHGRVCSF  189 (290)
Q Consensus       171 ~~~PT~~~~~~G~~~v~~~  189 (290)
                      .++||+++++..++++...
T Consensus       107 ~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         107 ESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             CSSSEEEEEETTTCCEEES
T ss_pred             CcCCEEEEEECCCCEEEee
Confidence            9999999997432345543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.7e-13  Score=107.19  Aligned_cols=91  Identities=11%  Similarity=0.157  Sum_probs=68.7

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHC-CCcEEEEEeccc--cHhHHHhcCccccCceEEEeCCCceeeeec
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMN-PDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYRGAHGRVCSFS  190 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~-~~v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~  190 (290)
                      .++|++||+||++||++|+.|...+   .++.+.+ .++.++.+|.+.  ...++++|+|.++||++|+....+++....
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~  119 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW  119 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEE
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEeccc
Confidence            4689999999999999999998744   2444433 358899999875  477899999999999999963222343333


Q ss_pred             CCccCHHHHHHHHHhhCC
Q 022923          191 CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       191 ~g~~~~~~l~~~L~k~~~  208 (290)
                       |+.+.++|.+.|++.+.
T Consensus       120 -~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         120 -HQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             -SSCCHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHh
Confidence             67889988777776654

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.6e-12  Score=101.30  Aligned_cols=66  Identities=23%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHH---HHCCCcEEEEEeccccHhHHHh-cCccccCceEEEeCC
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLA---EMNPDVQFLQVNYEEHKSMCYS-LNVHVLPFFRFYRGA  182 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la---~~~~~v~~~~Vd~d~~~~l~~~-~~I~~~PT~~~~~~G  182 (290)
                      ..+|++||+|||+||++|+.+.|.+.+..   +...++.++.||.++...++.. +...++||++++...
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~   92 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPS   92 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTT
T ss_pred             HcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCC
Confidence            46999999999999999999999986443   3445799999999887776654 455679999999643

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=2.8e-12  Score=97.70  Aligned_cols=85  Identities=13%  Similarity=0.198  Sum_probs=71.3

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCH
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATI  196 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~  196 (290)
                      +...++|+.||++||++|+.+.+.|+++...|+ ++++.+|.++++++.++|+++ +|++++  +|+  .. .. +..+.
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~--~~-~~-g~~d~   84 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFD-IPVFHL--NGQ--FL-MM-HRVNT   84 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSS--EE-EE-SSCCH
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhccc-CCceee--cCc--eE-Ee-CCCCH
Confidence            356789999999999999999999999987775 678899999999999999998 997654  776  22 22 67899


Q ss_pred             HHHHHHHHhhCCC
Q 022923          197 KKFKDALAKHTPD  209 (290)
Q Consensus       197 ~~l~~~L~k~~~~  209 (290)
                      ++|+++|++..+.
T Consensus        85 ~~L~~~L~~l~~~   97 (100)
T d1wjka_          85 SKLEKQLRKLSGP   97 (100)
T ss_dssp             HHHHHHHHSSSCS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999987643

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.24  E-value=1.4e-11  Score=98.52  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=58.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccc------------------------cHhHHHhcCc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE------------------------HKSMCYSLNV  170 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~------------------------~~~l~~~~~I  170 (290)
                      .+|+|+|+||++||++|+...|.+.++.++|.   ++.++.|+.++                        ...+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            58999999999999999999999999999874   47777777653                        1357889999


Q ss_pred             cccCceEEEeCCCceeeee
Q 022923          171 HVLPFFRFYRGAHGRVCSF  189 (290)
Q Consensus       171 ~~~PT~~~~~~G~~~v~~~  189 (290)
                      .++||+++++...+++...
T Consensus       105 ~~~Pt~~liD~~~G~Vi~~  123 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVVTT  123 (144)
T ss_dssp             CSSSEEEEEETTTCCEEES
T ss_pred             CcCCEEEEEeCCCCEEEEE
Confidence            9999999997432346543

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=2.8e-11  Score=96.02  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=70.9

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------cHhHHHhcCcccc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------HKSMCYSLNVHVL  173 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------~~~l~~~~~I~~~  173 (290)
                      .+++++|+||++||++|+...+.+.++.+++.  ++.++.|++++                      ...+++.|++.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            57899999999999999999999999999875  48888887643                      2357889999999


Q ss_pred             CceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          174 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       174 PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                      |++++++..+ ++.....|..+.+.+.++|+..
T Consensus       104 P~~~liD~~G-~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         104 PTTFLINPEG-KVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             CEEEEECTTS-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             ceEEEECCCC-EEEEEEECCCCHHHHHHHHHhh
Confidence            9999885543 5655555778888888887654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=7.3e-11  Score=97.09  Aligned_cols=76  Identities=9%  Similarity=0.113  Sum_probs=63.6

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc---CccccCceEEEeCCC
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAH  183 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~---~I~~~PT~~~~~~G~  183 (290)
                      ++..+.+..-.++.+++.||++||++|++..|.+.++++.++++.+..|+.+++++..++|   +...+|+++++++..
T Consensus        43 ~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~  121 (166)
T d1z6na1          43 SALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEF  121 (166)
T ss_dssp             HHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTC
T ss_pred             HHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCccc
Confidence            3455555544688899999999999999999999999999999999999999999999998   555778887775443

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=4.3e-11  Score=100.78  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc-----------------------------ccHhHHHh
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-----------------------------EHKSMCYS  167 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d-----------------------------~~~~l~~~  167 (290)
                      .+|+|||+||++||++|+...|.+.++.++|.+ +.|+.|+..                             ....+++.
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            689999999999999999999999999999964 777777531                             23458899


Q ss_pred             cCccccCceEEEeCC
Q 022923          168 LNVHVLPFFRFYRGA  182 (290)
Q Consensus       168 ~~I~~~PT~~~~~~G  182 (290)
                      |++.++|++++++..
T Consensus       111 ~~v~~~P~~~liD~~  125 (187)
T d2cvba1         111 YRALRTPEVFLFDER  125 (187)
T ss_dssp             TTCCEESEEEEECTT
T ss_pred             ccccceeeEEEEcCC
Confidence            999999999999544

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.99  E-value=8.3e-10  Score=91.12  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=63.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc--c--------------------------HhHHHh
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE--H--------------------------KSMCYS  167 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~--~--------------------------~~l~~~  167 (290)
                      .+|++||+||++||++|+...+.+.++.+++.  ++.++.|.++.  .                          ..+...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            58999999999999999999999999998774  35556565431  1                          112334


Q ss_pred             cCccccCceEEEeCCCceeeeecCCc--cCHHHHHHHHHhhC
Q 022923          168 LNVHVLPFFRFYRGAHGRVCSFSCTN--ATIKKFKDALAKHT  207 (290)
Q Consensus       168 ~~I~~~PT~~~~~~G~~~v~~~~~g~--~~~~~l~~~L~k~~  207 (290)
                      |+|.++|++++++.. +++.....|.  .+.+++++.|+.++
T Consensus       135 ~~v~~~P~~~lID~~-G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALGMPTSVLVDPQ-GCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSSSSEEEEECTT-SBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCC-CEEEEEEECCCCCChHHHHHHHHHhc
Confidence            678889998888544 3455444343  45688888888764

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.42  E-value=8e-07  Score=71.16  Aligned_cols=90  Identities=10%  Similarity=0.025  Sum_probs=63.4

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccc---------------------cHhHHHhcCcc--
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE---------------------HKSMCYSLNVH--  171 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~---------------------~~~l~~~~~I~--  171 (290)
                      ++|+++|.|| ++||++|....+.+.++.+++.+  +.++.|..+.                     +..+++.|++.  
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE  108 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCcccc
Confidence            5789999999 99999999999999988887753  6677776542                     34578888873  


Q ss_pred             --------ccCceEEEeCCCceeeee-c----CCccCHHHHHHHHHhhCC
Q 022923          172 --------VLPFFRFYRGAHGRVCSF-S----CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       172 --------~~PT~~~~~~G~~~v~~~-~----~g~~~~~~l~~~L~k~~~  208 (290)
                              ..|++++++..+ ++... .    .+..+.+++.+.+++.++
T Consensus       109 ~~~~~~~~~~~~~flId~~G-~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         109 DLKGLKMVAKRAVFIVKPDG-TVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             EETTEEEEECCEEEEECTTS-BEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccceeeEEEEcCCC-EEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                    467777774332 34321 1    233577888888877654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=4.6e-07  Score=73.09  Aligned_cols=84  Identities=21%  Similarity=0.358  Sum_probs=62.5

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEe----------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN----------------------------------------  157 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd----------------------------------------  157 (290)
                      ..+.+|+.|.-+-|++|+++.|.+.++.+.+..+.+...=                                        
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD  104 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhc
Confidence            4788999999999999999999999997754333222210                                        


Q ss_pred             --ccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          158 --YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       158 --~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                        ++++..+++++||+++||++ +.||+  +.   .|..+.+.|.++|++..
T Consensus       105 ~~i~~~~~la~~lgv~GTPt~~-~~nG~--~v---~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         105 VDIADHYALGVQLGVSGTPAVV-LSNGT--LV---PGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCHHHHHHHHHHHTCCSSSEEE-CTTSC--EE---ESCCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCcCCCEEE-EeCCe--Ee---cCCCCHHHHHHHHHHHH
Confidence              12355688999999999965 45675  32   27789999999998764

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=1.3e-06  Score=70.99  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .+|++||+|| ++||+.|....+.+.+..+++.  ++.++.|..+.                         +..+++.||
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            6899999999 9999999999999999998874  57888887652                         345788999


Q ss_pred             c-----cccCceEEEe-CCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          170 V-----HVLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       170 I-----~~~PT~~~~~-~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      |     ...|+.++++ +|+  +....    ..+++.+++.+.|+.+
T Consensus       123 v~~~~~~~~r~~fvID~~G~--I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNE--IQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSB--EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCE--EEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8     6778777775 444  42211    1236778888877753

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.23  E-value=6.1e-07  Score=71.97  Aligned_cols=83  Identities=18%  Similarity=0.269  Sum_probs=63.3

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------  158 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------  158 (290)
                      +.+.+|+.|.-+-|++|+++.+.+.++.+....+.+.....                                       
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~  104 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP  104 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhh
Confidence            56778999999999999999999999988754444443211                                       


Q ss_pred             ---cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923          159 ---EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  206 (290)
Q Consensus       159 ---d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~  206 (290)
                         +++..+++.+||+++||+++ .||+  +   ..|..+.++|++.|++-
T Consensus       105 ~~i~~~~~la~~lGv~GTPt~~~-~nG~--~---i~G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         105 NIVKKHYELGIQFGVRGTPSIVT-STGE--L---IGGYLKPADLLRALEET  149 (150)
T ss_dssp             SHHHHHHHHHHHHTCCSSCEEEC-TTSC--C---CCSCCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHhcCcCCCCEEEE-cCCc--E---ecCCCCHHHHHHHHHhh
Confidence               12456889999999999876 3665  2   23778999999999863

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=3.1e-06  Score=68.04  Aligned_cols=66  Identities=8%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccc---------------------cHhHHHhcCccccC
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE---------------------HKSMCYSLNVHVLP  174 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~---------------------~~~l~~~~~I~~~P  174 (290)
                      +++.|+++|| +.||++|....+.+.+...+|.+ +.++.|+.|.                     +.++++.|++...|
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~  111 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP  111 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCccc
Confidence            4677888888 89999999999999998888754 5677776542                     44688899988777


Q ss_pred             c------eEEEeCCC
Q 022923          175 F------FRFYRGAH  183 (290)
Q Consensus       175 T------~~~~~~G~  183 (290)
                      .      +++..+|+
T Consensus       112 ~~~~~r~~~i~~dg~  126 (156)
T d2a4va1         112 LSGSIRSHFIFVDGK  126 (156)
T ss_dssp             SSCBCCEEEEEETTE
T ss_pred             cCCeeEEEEEEECCe
Confidence            3      45557876

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.13  E-value=2.2e-06  Score=69.49  Aligned_cols=87  Identities=9%  Similarity=0.051  Sum_probs=61.5

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|+|||+|| ++||+.|....+.+.++.++|.  ++.++.|+.|.                            +..+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            5789999999 9999999999999999998875  47777787653                            234677


Q ss_pred             hcCcc------ccCceEEEe-CCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~-~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      .|++.      .+|+.++++ +|+  +....    ..+++.+++.+.|+.+
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~--Ir~~~~~~~~~~~~~~evL~~l~al  160 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGK--LRQIIINDMPIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSB--EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCE--EEEEEEcCCCCCCCHHHHHHHHHHH
Confidence            78873      356666664 443  42221    1245778888777653

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.05  E-value=8.9e-06  Score=65.36  Aligned_cols=86  Identities=17%  Similarity=0.277  Sum_probs=64.2

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEecc--c----------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE--E----------------------------------  160 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d--~----------------------------------  160 (290)
                      ..++.||.|...-|++|+.+.+.+.++.+++++ +.+....+.  .                                  
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            567899999999999999999999999998864 555444321  0                                  


Q ss_pred             ---------------------------------------cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHH
Q 022923          161 ---------------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKD  201 (290)
Q Consensus       161 ---------------------------------------~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~  201 (290)
                                                             +..++++++|+++|||++  ||+ .+.... +..+.++|.+
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk-~~v~~~-~~~~~~~l~~  172 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNR-YLVQGQ-SVKSLDEYFD  172 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTT-EEECGG-GCCSHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCE-EeeCCC-CCCCHHHHHH
Confidence                                                   123567889999999988  786 344433 5578888888


Q ss_pred             HHHhhC
Q 022923          202 ALAKHT  207 (290)
Q Consensus       202 ~L~k~~  207 (290)
                      .|+.++
T Consensus       173 ~i~~L~  178 (181)
T d1beda_         173 LVNYLL  178 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.6e-05  Score=64.58  Aligned_cols=83  Identities=14%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc--------------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------------------------------------  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--------------------------------------  159 (290)
                      ..+.+|+.|.-+-|++|+++.+.++++.+.+ ++++..+++.                                      
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~  113 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  113 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence            3456789999999999999999999998764 5666655431                                      


Q ss_pred             ------------ccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923          160 ------------EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  203 (290)
Q Consensus       160 ------------~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L  203 (290)
                                  ++..+++++||.++|||++...+. ....+. |..+.+.|.+.|
T Consensus       114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g-~~~~~~-G~~~~~~l~~il  167 (169)
T d1v58a1         114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAV-GLPDQKTLNIIM  167 (169)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEE-SSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC-CEEEec-CCCCHHHHHHHh
Confidence                        134578889999999988876443 443333 777887776654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.96  E-value=1.1e-05  Score=65.63  Aligned_cols=87  Identities=8%  Similarity=0.015  Sum_probs=59.2

Q ss_pred             CCCeEEEEEeCC-CChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .+|.+||+||.. ||++|....+.+.++.+++.  ++.++.|..|.                         +.++++.|+
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            688999999955 99999999999999998883  58888887763                         235788888


Q ss_pred             cc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHh
Q 022923          170 VH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAK  205 (290)
Q Consensus       170 I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k  205 (290)
                      +.      ..|+.++++..+ .+....    ..+++.+++.+.|+.
T Consensus       110 v~~~~~~~~~r~tfvID~~G-~I~~~~i~~~~~~r~~~eil~~lka  154 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDG-VIQAIEINADGIGRDASTLINKVKA  154 (166)
T ss_dssp             CEETTTTEECEEEEEECTTS-BEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             CCccccCcccceEEEECCCC-cEEEEEEcCCCCCCCHHHHHHHHHh
Confidence            85      344455554332 342221    123466666666553

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.94  E-value=2.6e-05  Score=67.12  Aligned_cols=88  Identities=8%  Similarity=0.027  Sum_probs=65.3

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------------cHhHHHh
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS  167 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~  167 (290)
                      +++.+|++|| ++||+.|....+.+.++.+++.  ++.++.|.+|.                           +..+++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            6889999999 9999999999999998888773  57888887652                           3468899


Q ss_pred             cCc-------cccCceEEEeCCCceeeee----cCCccCHHHHHHHHHhh
Q 022923          168 LNV-------HVLPFFRFYRGAHGRVCSF----SCTNATIKKFKDALAKH  206 (290)
Q Consensus       168 ~~I-------~~~PT~~~~~~G~~~v~~~----~~g~~~~~~l~~~L~k~  206 (290)
                      |||       ...|++++++..+ ++...    ...+++.+++.+.|+.+
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG-~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARG-VIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTS-BEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            998       4678877774443 33221    12357899999888754

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.90  E-value=1.1e-05  Score=64.62  Aligned_cols=81  Identities=12%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC---cEEEEEeccc----------------------------------
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEE----------------------------------  160 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~---v~~~~Vd~d~----------------------------------  160 (290)
                      ..+..|+.|....|++|+++.+.+.++.+++++   +.+..+....                                  
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  102 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhc
Confidence            356679999999999999999999999887642   4444433210                                  


Q ss_pred             --------------------------------cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923          161 --------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  205 (290)
Q Consensus       161 --------------------------------~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k  205 (290)
                                                      ....+++++|+++|||++  ||+  .  + .|..+.++|.++|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~--~--~-~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         103 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY--I--F-DESVTEEELRGYIEK  172 (172)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE--E--E-CTTCCHHHHHHHHTC
T ss_pred             cccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCE--E--e-cCCCCHHHHHHHHcC
Confidence                                            112456789999999876  775  3  2 378999999999874

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.89  E-value=1.9e-05  Score=65.93  Aligned_cols=88  Identities=9%  Similarity=0.025  Sum_probs=64.2

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|+|||+|| ++||+.|....+.+.++.+++.  +++++.|..|.                            +.++++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            5789999999 9999999999999999988874  58888887652                            346889


Q ss_pred             hcCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      .|+|.      .+|+.++++.. +++....    .-+++.+++.+.|+.+
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~-G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPK-QNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTT-SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCC-CeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            99984      35555555332 2343221    2347888888888754

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.3e-05  Score=66.56  Aligned_cols=44  Identities=9%  Similarity=0.060  Sum_probs=38.6

Q ss_pred             cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc
Q 022923          117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE  160 (290)
Q Consensus       117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~  160 (290)
                      -++|++||.+||+||+.|.+..+.|++|.++|.  ++.++.+-|++
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nq   67 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ   67 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccc
Confidence            379999999999999999999999999999985  48888887653

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=4.3e-05  Score=60.36  Aligned_cols=87  Identities=17%  Similarity=0.071  Sum_probs=57.2

Q ss_pred             CCCeEEEE-EeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------------------cHhHHHhcCcc
Q 022923          118 GDKLVVVD-FFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------HKSMCYSLNVH  171 (290)
Q Consensus       118 ~~k~vlV~-FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------------------~~~l~~~~~I~  171 (290)
                      +++++++. |++.||++|....+.+.++.+++.  ++.++.|+.|.                       +..+++.|+|.
T Consensus        28 g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~  107 (153)
T d1xvwa1          28 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  107 (153)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhh
Confidence            34555555 459999999999999999988875  47888887653                       23577888875


Q ss_pred             c------cCceEEE-eCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          172 V------LPFFRFY-RGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       172 ~------~PT~~~~-~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      .      .|+.+++ ++|  ++....    ...++..++.+.|..+
T Consensus       108 ~~~~g~~~r~tfvID~~G--~I~~~~~~~~~~~~~~~~~~~~L~aL  151 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDRSG--IIRFAEMKQPGEVRDQRLWTDALAAL  151 (153)
T ss_dssp             ETTTTEECSEEEEECTTS--BEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             hhccCceeeeEEEECCCC--EEEEEEEeCCCcccCHHHHHHHHHhh
Confidence            3      3445555 344  343221    1235677787777664

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.78  E-value=6.9e-05  Score=57.74  Aligned_cols=88  Identities=15%  Similarity=0.215  Sum_probs=64.4

Q ss_pred             cCCCeEEEEEeC--CCChHHHHHHHHHHHHHHHCCCcEEEEEecc--ccHhHHHhcCccccCceEEEeCCCceeeeecCC
Q 022923          117 AGDKLVVVDFFS--PGCGGCKALHPKICQLAEMNPDVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT  192 (290)
Q Consensus       117 ~~~k~vlV~FyA--~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g  192 (290)
                      .=.++|-|.+|.  +.|..|..+...+++++..-+.+.+...|.+  ++.+++++|+|...|+|.++++|+..-+.|. |
T Consensus        19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~-G   97 (119)
T d1a8la1          19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYF-G   97 (119)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEE-S
T ss_pred             hCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEE-e
Confidence            346677777665  5799999999999999988777877777765  4678999999999999999988763223444 3


Q ss_pred             ccCHHHHHHHHHh
Q 022923          193 NATIKKFKDALAK  205 (290)
Q Consensus       193 ~~~~~~l~~~L~k  205 (290)
                      -..=.+|..+|..
T Consensus        98 iP~GhEf~Slila  110 (119)
T d1a8la1          98 LPAGHEFAAFLED  110 (119)
T ss_dssp             CCCTTHHHHHHHH
T ss_pred             ccCchhHHHHHHH
Confidence            3343444444443

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.77  E-value=5.5e-05  Score=60.65  Aligned_cols=86  Identities=9%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|+|||+|| +.||+.|....+.+.++.+++.  ++.++.|..|.                            ...+++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHH
Confidence            4789999999 9999999999999999988763  57777776542                            335788


Q ss_pred             hcCccccC------ceEEE-eCCCceeeee----cCCccCHHHHHHHHHh
Q 022923          167 SLNVHVLP------FFRFY-RGAHGRVCSF----SCTNATIKKFKDALAK  205 (290)
Q Consensus       167 ~~~I~~~P------T~~~~-~~G~~~v~~~----~~g~~~~~~l~~~L~k  205 (290)
                      .|++...+      +.+++ ++|.  +...    ...+++.+++.+.|+.
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~~G~--I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDPNGV--IKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSB--EEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHhccccCCccccEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHH
Confidence            89887544      33444 4443  4321    1234678888888874

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.75  E-value=5.4e-05  Score=60.84  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=36.9

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEecc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d  159 (290)
                      .+|++||.|| +.||+.|....+.+.+...++.++.++.|..+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d   83 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESS
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEec
Confidence            5788999888 78999999999999998888888888888765

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.72  E-value=4.3e-05  Score=62.13  Aligned_cols=88  Identities=11%  Similarity=0.032  Sum_probs=60.6

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      +++++|++|| +.||+.|....+.+.+..+++  .++.++.|+.|.                            ..++++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence            4568999999 999999999999999888776  357788887652                            345788


Q ss_pred             hcCcc-----ccCceEEEeCCCceee--eec--CCccCHHHHHHHHHhh
Q 022923          167 SLNVH-----VLPFFRFYRGAHGRVC--SFS--CTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~-----~~PT~~~~~~G~~~v~--~~~--~g~~~~~~l~~~L~k~  206 (290)
                      .|++.     ..|+.++++... ++.  .+.  ..+++.+++.+.|+.+
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G-~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNM-KVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTT-EEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HcCCCccccceeEEEEEEcCCC-eEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            89884     456666664433 332  111  1245677777776644

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.70  E-value=0.00018  Score=55.63  Aligned_cols=106  Identities=16%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCc--cccC
Q 022923           98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNV--HVLP  174 (290)
Q Consensus        98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I--~~~P  174 (290)
                      .|-+.+++ .+++....  ..+++.++.|+..- .....+...+.+++++|.+ +.|+.+|.+++....+.|++  ..+|
T Consensus         5 lPLv~e~~-~~n~~~~~--~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P   80 (133)
T d2djka1           5 SPLIGEIG-PETYSDYM--SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFP   80 (133)
T ss_dssp             CCCSEECC-HHHHHHHH--HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSS
T ss_pred             CCceeccC-hhhHHHHh--cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCC
Confidence            34556665 56777777  45778888888664 4568889999999999965 99999999998888899998  5689


Q ss_pred             ceEEEeCCCceeeeec-CCccCHHHHHHHHHhhC
Q 022923          175 FFRFYRGAHGRVCSFS-CTNATIKKFKDALAKHT  207 (290)
Q Consensus       175 T~~~~~~G~~~v~~~~-~g~~~~~~l~~~L~k~~  207 (290)
                      .++++.........+. .+..+.+.+.+||++++
T Consensus        81 ~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~  114 (133)
T d2djka1          81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCceecCCccccCCHHHHHHHHHHHH
Confidence            9999865543343333 24578999999999886

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.64  E-value=7.9e-05  Score=51.91  Aligned_cols=67  Identities=12%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh---HHHhcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  199 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~---l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l  199 (290)
                      ++.|..+||++|.+....|++.     ++.|..+|++++++   ..+.++...+|++++  +|+ .+     |+.+.++|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~-~i-----gGf~~d~l   69 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE-HW-----SGFRPERI   69 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE-EE-----ESCCHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCE-EE-----eCCCHhHH
Confidence            5678999999999999888764     67788888887654   446678999997643  665 33     34455666


Q ss_pred             HHH
Q 022923          200 KDA  202 (290)
Q Consensus       200 ~~~  202 (290)
                      .+.
T Consensus        70 ~~L   72 (74)
T d1r7ha_          70 KQL   72 (74)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00013  Score=56.98  Aligned_cols=89  Identities=13%  Similarity=0.164  Sum_probs=58.4

Q ss_pred             CCCeEEEEEeCCCCh-HHHHHHHHHHHHHHHC---C---CcEEEEEeccc----------------------------cH
Q 022923          118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMN---P---DVQFLQVNYEE----------------------------HK  162 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~~~---~---~v~~~~Vd~d~----------------------------~~  162 (290)
                      .+|++||+||.+||+ .|..+.+.+.++.+.+   .   .+.+..+..+.                            ..
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            689999999999996 7998888888777653   2   24444444321                            11


Q ss_pred             hHHHhcCccc---------------cCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          163 SMCYSLNVHV---------------LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       163 ~l~~~~~I~~---------------~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      .+...|++..               .++++++.. ++++..+..+..+.+++.+.|.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~-~G~i~~~~~~~~~~~~i~~~I~~~l  157 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHM  157 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            2445555443               355566633 3357666656778888888888775

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=4.5e-05  Score=61.46  Aligned_cols=42  Identities=29%  Similarity=0.312  Sum_probs=37.1

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEecc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d  159 (290)
                      .+|++||.|| +.||++|....+.+.++..++.++.++.|..|
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d   85 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISAD   85 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcC
Confidence            5788999888 77999999999999999999988888888765

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=4.3e-05  Score=54.96  Aligned_cols=74  Identities=16%  Similarity=0.226  Sum_probs=53.4

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhc--CccccCceEEEeCCCceeeeecCCccCH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSL--NVHVLPFFRFYRGAHGRVCSFSCTNATI  196 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~--~I~~~PT~~~~~~G~~~v~~~~~g~~~~  196 (290)
                      +|.|..+||++|++....+.++...+.++.+..+|+++++    .+.+..  ++..+|.+++  +|+ .+     |+.  
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~-~I-----GG~--   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ-HI-----GGY--   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE-EE-----ESS--
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE-EE-----ECH--
Confidence            5678999999999999999999999999999999886543    333333  4567888644  775 33     222  


Q ss_pred             HHHHHHHHhh
Q 022923          197 KKFKDALAKH  206 (290)
Q Consensus       197 ~~l~~~L~k~  206 (290)
                      ++|.+++++.
T Consensus        73 ~el~~~~~~~   82 (85)
T d1egoa_          73 TDFAAWVKEN   82 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            4566666654

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00043  Score=52.00  Aligned_cols=97  Identities=10%  Similarity=0.077  Sum_probs=75.3

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~  180 (290)
                      ...|.+.+++++.+.  .+..++|-|+.+--..   ....+.++++.++++.|+.+.   +.++++.+++.. |++++|+
T Consensus         2 a~~l~~~~~~e~f~~--~~~v~VVGfF~~~~~~---~~~~F~~~A~~~~d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k   72 (110)
T d1bjxa_           2 ATTLPDGAAAESLVE--SSEVAVIGFFKDVESD---SAKQFLQAAEAIDDIPFGITS---NSDVFSKYQLDK-DGVVLFK   72 (110)
T ss_dssp             EEECCSHHHHHHHHH--HSSEEEEEECTTTTSH---HHHHHHHHHHHCSSSCEEEEC---CSHHHHHTTCSS-CEEEEEE
T ss_pred             ceEcCCHHHHHHHhc--cCCeEEEEEEcCCCch---HHHHHHHHHHhCcCceEEEEC---CHHHHHHcCCCC-CeEEEec
Confidence            456888999999984  5688888888764333   445788889999888888765   457889999976 9999999


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +....... ..|..+.++|.+||..+.
T Consensus        73 ~~de~~~~-~~~~~~~~~l~~fi~~~~   98 (110)
T d1bjxa_          73 KFDEGRNN-FEGEVTKENLLDFIKHNQ   98 (110)
T ss_dssp             SSSSSBCC-CCSCCCHHHHHHHHHHHS
T ss_pred             cCCccccc-cCCCCCHHHHHHHHHHcC
Confidence            87633333 347789999999999886

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.51  E-value=0.00029  Score=58.07  Aligned_cols=88  Identities=6%  Similarity=-0.056  Sum_probs=61.6

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN  169 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~  169 (290)
                      .+|.+||+|| ++||+.|....+.+.+..+++.  ++.++.|..|.                         +..+++.|+
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            5789999999 9999999999999999988873  57788777653                         345788898


Q ss_pred             cc------ccCceEEEeCCCceeeee--c--CCccCHHHHHHHHHhh
Q 022923          170 VH------VLPFFRFYRGAHGRVCSF--S--CTNATIKKFKDALAKH  206 (290)
Q Consensus       170 I~------~~PT~~~~~~G~~~v~~~--~--~g~~~~~~l~~~L~k~  206 (290)
                      |.      ..|+.++++..+ .+...  .  ..+++.+++.+.|+.+
T Consensus       109 v~~~~~g~~~r~tfiID~~G-~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQG-IIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             CEETTTTEECEEEEEECTTS-BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchh-eEEEEeecCCCcccCHHHHHHHHHHH
Confidence            85      244555553322 33211  1  2357888888777653

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.48  E-value=0.00041  Score=48.85  Aligned_cols=72  Identities=11%  Similarity=0.176  Sum_probs=53.6

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  202 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~  202 (290)
                      +..|..++|+-|......+.    +..++.+..+|+++++++..+|+.. +|.++ + +|+ ....   -..+.+++.++
T Consensus         2 ltLyt~~~C~LCe~A~~~l~----~~~~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~-~~~-~~l~---w~fd~~~l~~~   70 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA----QARAGAFFSVFIDDDAALESAYGLR-VPVLR-D-PMG-RELD---WPFDAPRLRAW   70 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----HTTCCCEEEEECTTCHHHHHHHTTT-CSEEE-C-TTC-CEEE---SCCCHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH----hccCCcEEEEEccCCHHHHHHhCCe-eeEEE-E-CCe-eEEc---CccCHHHHHHH
Confidence            56689999999988765543    2346889999999999999999977 89664 3 443 2322   24689999999


Q ss_pred             HHh
Q 022923          203 LAK  205 (290)
Q Consensus       203 L~k  205 (290)
                      |..
T Consensus        71 L~~   73 (75)
T d1ttza_          71 LDA   73 (75)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            864

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00013  Score=51.22  Aligned_cols=54  Identities=15%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHH---HhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~---~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|..+||++|.+....|++.     ++.|..+|++++++..   +..|.+.+|++++  +|+
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~   59 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDL   59 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCE
Confidence            5668899999999999888765     6888888998876543   4568999999765  554

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00017  Score=58.13  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHH---HCC-CcEEEEEe
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKICQLAE---MNP-DVQFLQVN  157 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~---~~~-~v~~~~Vd  157 (290)
                      .++++||.|+.-.|+||+.+.+.+..+.+   .++ ++.|...+
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            46778999999999999999998754443   333 35555554

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.40  E-value=0.00027  Score=57.20  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      ++++|||+|| +.||+.|......+.+..+++.  ++.++.|+.|.                            +..+++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  105 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  105 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHH
Confidence            4589999999 9999999999999998888763  58888888662                            246788


Q ss_pred             hcCcc-----ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923          167 SLNVH-----VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~-----~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~  206 (290)
                      .|+|.     ..++.++++.++ .+....    ..+++.+++.+.|+.+
T Consensus       106 ~ygv~~~~~~~~R~tfiId~~G-~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         106 SYDVLFNESVALRAFVLIDKQG-VVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             HTTCEETTTEECCEEEEECTTS-BEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhCCccccccceeeeEEEcCCC-eEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            88884     345655554333 343221    2335778888777653

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.35  E-value=0.00046  Score=55.38  Aligned_cols=42  Identities=17%  Similarity=0.395  Sum_probs=34.8

Q ss_pred             CCCeEEEEEeCCCCh-HHHHHHHHHHHHHHHC----CCcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMN----PDVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~~~----~~v~~~~Vd~d  159 (290)
                      .+|++||+||.+||+ .|....+.+.++.+.+    .++.++.|.+|
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            589999999999996 7999999988877654    45888888765

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.0016  Score=49.90  Aligned_cols=100  Identities=11%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccc-cCceEEEeCCC
Q 022923          106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHV-LPFFRFYRGAH  183 (290)
Q Consensus       106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~-~PT~~~~~~G~  183 (290)
                      +.+++...+  ..+.|+++.||.+-- .-..+...+.+++++|.+ +.|+.+|.+++....+.||+.. .|.+++....+
T Consensus         6 ~~~~~~~y~--~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~   82 (125)
T d2b5ea3           6 DGSVFAQYV--ESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTE   82 (125)
T ss_dssp             CHHHHHHHH--HTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTT
T ss_pred             CHHHHHHHH--hcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEeccc
Confidence            346777777  468899999998753 455788899999999976 9999999999988999999864 89998886544


Q ss_pred             ceeeeec------------CCccCHHHHHHHHHhhCC
Q 022923          184 GRVCSFS------------CTNATIKKFKDALAKHTP  208 (290)
Q Consensus       184 ~~v~~~~------------~g~~~~~~l~~~L~k~~~  208 (290)
                      .....+.            .+..+.+.|.+|+++.+.
T Consensus        83 ~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          83 DLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             TEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             CcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence            2222211            245789999999998863

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.26  E-value=0.0019  Score=47.89  Aligned_cols=99  Identities=12%  Similarity=0.167  Sum_probs=73.7

Q ss_pred             eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923          101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  179 (290)
Q Consensus       101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~  179 (290)
                      |..|.+.+++.+.+.. .+..++|=|+.+--+.   ....+.++++.+ +++.|+...   +.+++++++|. .|++++|
T Consensus         1 v~~i~~~~e~~~F~~~-~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v~-~~~vvlf   72 (102)
T d1a8ya2           1 VELIEGERELQAFENI-EDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK-LNEIDFY   72 (102)
T ss_dssp             EEEECSHHHHHHHTTC-CSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCCC-TTCEEEE
T ss_pred             CeeecCHHHHHHHhcc-CCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEEC---CHHHHHHcCCC-CCCEEEe
Confidence            3467888888888732 4567888888764444   445777888776 679998755   78899999995 7999999


Q ss_pred             eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          180 RGAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      ++=......|.....+.++|..||.++.
T Consensus        73 r~fde~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          73 EAFMEEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             CTTCSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             eecCCCceecCCCCCCHHHHHHHHHHhc
Confidence            8765445555522478999999999874

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.19  E-value=0.00073  Score=47.79  Aligned_cols=71  Identities=17%  Similarity=0.359  Sum_probs=53.7

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCc-cCHHHHHH
Q 022923          124 VDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKD  201 (290)
Q Consensus       124 V~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~-~~~~~l~~  201 (290)
                      |....+.|..|.++....++..++.+ +..+.+|  ++..++. +|||.++|.+++  ||+  +.. . |. .+.+++++
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~--vv~-~-G~vPs~~ei~~   74 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGE--LKI-M-GRVASKEEIKK   74 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTE--EEE-C-SSCCCHHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCE--EEE-E-ecCCCHHHHHH
Confidence            45568999999999999999888874 3444444  5667776 599999999988  775  433 2 43 58999988


Q ss_pred             HH
Q 022923          202 AL  203 (290)
Q Consensus       202 ~L  203 (290)
                      +|
T Consensus        75 ~L   76 (77)
T d1iloa_          75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            75

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0014  Score=55.15  Aligned_cols=88  Identities=9%  Similarity=0.110  Sum_probs=62.1

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc-------------------------------ccHh
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE-------------------------------EHKS  163 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d-------------------------------~~~~  163 (290)
                      +++++|++|| ++||+.|......+.+..+++.  ++.++.|.+|                               .+.+
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccH
Confidence            5689999999 8999999999999998888874  4777777654                               2346


Q ss_pred             HHHhcCcc------------ccCceEEEeCCCceeeee----cCCccCHHHHHHHHHhh
Q 022923          164 MCYSLNVH------------VLPFFRFYRGAHGRVCSF----SCTNATIKKFKDALAKH  206 (290)
Q Consensus       164 l~~~~~I~------------~~PT~~~~~~G~~~v~~~----~~g~~~~~~l~~~L~k~  206 (290)
                      +++.|++.            ...+.++++..+ .+...    ...+++.+++...|+.+
T Consensus       106 va~~ygv~~~~~~~~~~~~~~~RatFIID~~g-~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         106 LAILLGMLDPAEKDEKGMPVTARVVFVFGPDK-KLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             HHHHTTSSCSCTTCSSSCCTTCCEEEEECTTS-BEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccccceeeeEEEEEEcCcc-ceeEEEEecCCcccchHHHHHHHHHH
Confidence            78899886            234455553332 33221    12457899998888755

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.17  E-value=0.00036  Score=55.96  Aligned_cols=43  Identities=23%  Similarity=0.238  Sum_probs=37.2

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE  160 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~  160 (290)
                      .+|+++|+|| +.||+.|....+.|.+..+++.++.++.|.+|.
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~   84 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADL   84 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSC
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCCc
Confidence            5788999999 668888999999999999999998888887763

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00086  Score=55.62  Aligned_cols=88  Identities=14%  Similarity=0.062  Sum_probs=62.7

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      .+|.+||+|| ++||+.|......+.+..++|.  ++.++.|.+|.                            +.++++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            4789999999 9999999999999999998875  58888887652                            345788


Q ss_pred             hcCcc------ccCceEEEeCCCceeee---e-cCCccCHHHHHHHHHhh
Q 022923          167 SLNVH------VLPFFRFYRGAHGRVCS---F-SCTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~------~~PT~~~~~~G~~~v~~---~-~~g~~~~~~l~~~L~k~  206 (290)
                      .|++.      .+++.++++.. +++..   + ..-+++.+++...|+.+
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~-g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGK-GVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTT-SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCC-CcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            89885      34555555322 23322   1 12347888888877654

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.00043  Score=55.48  Aligned_cols=42  Identities=19%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE  160 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~  160 (290)
                      .+|++|++|| +.||+.|....+.+.+..+++ +++++.|..|.
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d~   84 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKDL   84 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccch
Confidence            5788999999 558888999999988877765 56777776653

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.0025  Score=49.00  Aligned_cols=29  Identities=17%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             CCCeEEEEEeCCCCh-HHHHHHHHHHHHHH
Q 022923          118 GDKLVVVDFFSPGCG-GCKALHPKICQLAE  146 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~  146 (290)
                      .+|++||+||.+||+ .|..+...+..+..
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~   54 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLN   54 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhh
Confidence            689999999999996 55555555554443

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.82  E-value=0.00042  Score=51.61  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=44.8

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh-----HHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-----MCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~-----l~~~~~I~~~PT~~~~~~G~  183 (290)
                      +|.|..+||++|++....|.++.-.+..+.+..+|.+.+..     +.+..+...+|.+++  +|+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~   77 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE   77 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence            56799999999999999998877667778888888776543     333457778887643  775

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.73  E-value=0.0014  Score=46.25  Aligned_cols=54  Identities=15%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~  183 (290)
                      |..|..+||++|++....|++.     ++.|..+|++++.+    +.+..+...+|.+++  +|+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~   60 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            4568899999999999888776     57778888876543    455568889998643  665

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.0054  Score=42.13  Aligned_cols=54  Identities=17%  Similarity=0.279  Sum_probs=39.6

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH---hHHHhcCccccCceEEEeCCC
Q 022923          123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK---SMCYSLNVHVLPFFRFYRGAH  183 (290)
Q Consensus       123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~---~l~~~~~I~~~PT~~~~~~G~  183 (290)
                      ++.|..++|++|++....|++.     ++.|..+|++++.   .+.+..+...+|.+++  +|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~   63 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGK   63 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCE
Confidence            4668999999999999888876     5666677776433   3445677888998643  665

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=95.99  E-value=0.015  Score=48.66  Aligned_cols=88  Identities=8%  Similarity=0.140  Sum_probs=61.7

Q ss_pred             CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923          118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY  166 (290)
Q Consensus       118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~  166 (290)
                      +++.+|++|| ++||+.|......+.+..+++.  ++.++.|.+|.                            +.++++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence            6899999999 9999999999999998888764  57888887652                            335788


Q ss_pred             hcCccc----------cC--ceEEEeCCCceee-e--e-cCCccCHHHHHHHHHhh
Q 022923          167 SLNVHV----------LP--FFRFYRGAHGRVC-S--F-SCTNATIKKFKDALAKH  206 (290)
Q Consensus       167 ~~~I~~----------~P--T~~~~~~G~~~v~-~--~-~~g~~~~~~l~~~L~k~  206 (290)
                      .||+..          ++  +.++++ .++.+. .  + ...+++.+++.+.|+.+
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiID-p~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFIS-PEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEEC-TTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCcccccccCcccceeeeeeEEEc-CcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            888832          22  344443 332332 1  1 12457899988888754

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.029  Score=41.58  Aligned_cols=64  Identities=16%  Similarity=0.168  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCCeEEEEEeC-----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHH----HhcCccccCceEEE
Q 022923          109 DLVESLWHAGDKLVVVDFFS-----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFY  179 (290)
Q Consensus       109 ~f~~~l~~~~~k~vlV~FyA-----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~----~~~~I~~~PT~~~~  179 (290)
                      .++.++   ++.+|+| |.-     |.|+.|++....|.++     ++.|..+|+++++++.    +..+...+|.++  
T Consensus         7 ~i~~~i---~~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF--   75 (109)
T d1wika_           7 GLKVLT---NKASVML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY--   75 (109)
T ss_dssp             CHHHHH---TTSSEEE-EESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE--
T ss_pred             HHHHHH---hcCCEEE-EeCCCCCCCCChHHHHHHHHHHhc-----CCCceEEEecccHHHHHHHHHhcCCCCCCeEE--
Confidence            345555   3445555 643     8899999999888654     5778888888776543    344566666654  


Q ss_pred             eCCC
Q 022923          180 RGAH  183 (290)
Q Consensus       180 ~~G~  183 (290)
                      .+|+
T Consensus        76 i~g~   79 (109)
T d1wika_          76 VRGD   79 (109)
T ss_dssp             CSSS
T ss_pred             ECCE
Confidence            4776

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.028  Score=45.82  Aligned_cols=42  Identities=19%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             CCCeEEEEEeCCCChHHHHHHHHHH---HHHHHCC-CcEEEEEecc
Q 022923          118 GDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYE  159 (290)
Q Consensus       118 ~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d  159 (290)
                      .+++.|+.|+.-+|++|+++.|.+.   ++.+.++ ++.|..+.+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4678899999999999999999875   5555665 4777766553

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.74  E-value=0.57  Score=38.70  Aligned_cols=83  Identities=19%  Similarity=0.208  Sum_probs=59.9

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc--------c----------cHhHHHhcCccccCceEEEe
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------E----------HKSMCYSLNVHVLPFFRFYR  180 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--------~----------~~~l~~~~~I~~~PT~~~~~  180 (290)
                      -+.||=.|.+.||..|=.....+.+|++. ++|..+.+.+|        +          ...++..++...+||=-++.
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv   83 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL   83 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhCC-CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE
Confidence            34466678899999999999999999876 67777776654        1          12456778999999866666


Q ss_pred             CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923          181 GAHGRVCSFSCTNATIKKFKDALAKHT  207 (290)
Q Consensus       181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~  207 (290)
                      +|+...     .+.+...+.+.|.++.
T Consensus        84 nG~~~~-----~gs~~~~~~~~i~~~~  105 (225)
T d2axoa1          84 NGRDHV-----KGADVRGIYDRLDAFK  105 (225)
T ss_dssp             TTTEEE-----ETTCHHHHHHHHHHHH
T ss_pred             eCcccc-----cccCHHHHHHHHHHHh
Confidence            887322     3456677777776654

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=89.57  E-value=2.3  Score=30.75  Aligned_cols=83  Identities=8%  Similarity=0.155  Sum_probs=57.4

Q ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHC-C--CcEEEEEeccccHhHHHhcCccccCceE-EEeCCCceeeeecCCcc
Q 022923          119 DKLVVVDFFSPGCGGCKALHPKICQLAEMN-P--DVQFLQVNYEEHKSMCYSLNVHVLPFFR-FYRGAHGRVCSFSCTNA  194 (290)
Q Consensus       119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~-~~~~G~~~v~~~~~g~~  194 (290)
                      .+...+..|.+.-+........+.++.+.+ .  .+.+=-||+.+++++++.++|-++||++ +...-. +  .+. |..
T Consensus        10 ~~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~P~-q--~l~-Gs~   85 (105)
T d1t4za_          10 AQPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPGSR-Q--VLS-GID   85 (105)
T ss_dssp             CCCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESSCC-E--EEE-SSC
T ss_pred             CCCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCCcc-e--eec-Chh
Confidence            445566666666666666666666666654 3  3799999999999999999999999987 444433 1  222 555


Q ss_pred             CHHHHHHHHHh
Q 022923          195 TIKKFKDALAK  205 (290)
Q Consensus       195 ~~~~l~~~L~k  205 (290)
                      -.+++..|.-+
T Consensus        86 i~~ql~~w~pr   96 (105)
T d1t4za_          86 LTDQLANQLPQ   96 (105)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHhhhhhH
Confidence            66777776644

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.84  E-value=1.4  Score=31.75  Aligned_cols=88  Identities=16%  Similarity=0.037  Sum_probs=58.2

Q ss_pred             hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923          108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  187 (290)
Q Consensus       108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~  187 (290)
                      +++...+.. =.++|.+..+.+-|..|..+...+++++.--+.+.+..-+.          +....|+|.+.++|+..-+
T Consensus         8 ~QLk~~f~~-l~~~V~l~~~~~~~~~s~el~~~l~eva~lSdkI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI   76 (102)
T d1hyua3           8 TQLRAYLEK-LTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNT----------LPVRKPSFLITNPGSQQGP   76 (102)
T ss_dssp             HHHHHHHTT-CCSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTT----------SSSCSSEEEEECTTCCCSC
T ss_pred             HHHHHHHHh-CCCCEEEEEEeCCChhHHHHHHHHHHHHhhCCCeEEEEcCC----------CCCCCCeEEEecCCCEeee
Confidence            345555543 46788888999999999999999999998877777653222          2234699999887763223


Q ss_pred             eec--CCccCHHHHHHHHHhh
Q 022923          188 SFS--CTNATIKKFKDALAKH  206 (290)
Q Consensus       188 ~~~--~g~~~~~~l~~~L~k~  206 (290)
                      .|.  -++.....|+..|-..
T Consensus        77 ~F~GiP~GhEF~Slilail~v   97 (102)
T d1hyua3          77 RFAGSPLGHEFTSLVLALLWT   97 (102)
T ss_dssp             EEESCCCGGGHHHHHHHHHHH
T ss_pred             EEecCCCcccHHHHHHHHHhc
Confidence            343  2444555555554444

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.17  E-value=0.93  Score=31.67  Aligned_cols=38  Identities=8%  Similarity=0.114  Sum_probs=29.2

Q ss_pred             EEEEeCCCCh------HHHHHHHHHHHHHHHCCCcEEEEEeccccHhHH
Q 022923          123 VVDFFSPGCG------GCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC  165 (290)
Q Consensus       123 lV~FyA~WC~------~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~  165 (290)
                      ++.|+++||+      .|.++.-.|+..     ++.|-.+|++.+.+..
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~-----~I~y~~iDi~~d~~~~   47 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK-----RIQYQLVDISQDNALR   47 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCCEEEETTSCHHHH
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC-----CCceEEEEecCchhHH
Confidence            4557999995      898888777764     6888899998765543