Citrus Sinensis ID: 022971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MGAGISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKKRVHTIS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHccHHHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHccccccccccEEEEEEcccccEEEEEcccccEEEcccccccEEEccccccccccEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEEEEEEEcEEEEEEEccccccEEEEEccccccEEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEcccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHcccccccccccHHHHHHHHccccEcccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEEccccccEEEEEEEEEEcccccccccccEcEEEEEccccccEEEEEEccccccccEcccccccccEEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEcHHHHHHHHccEEEcc
Coil and Loop (DISEMBL)
MGAGISAGFATETLlstsspslndvpescvssifmhldppeICKLALLNktfrgassadflwetklpsnyKYLVKKVLNESPQKLTKKEIYARlsqpnrfdnatKEIWldkrsgkvcMSISAKsmkitgiddrrywnqiaTEESRFHSVAYLQQTWWCEAIgelefefpqgtySLFFRLQLGKASKRFGRRICNleqvhgwdvkpvrfqlstsngqkavsecclydpgnwvlyhvgdfavendqtstkIKFSMMQidcthtkgglcidsvliypSEFKERLKKRVHTIS
Flexible Loop (DISEMBL)
MGAGISAGFATETLlstsspslnDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVlnespqkltkkeiyarlsqpnrfdnatkeiwldkrsgkvcmsisaksmkitgiddrRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLeqvhgwdvkpvRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLiypsefkerlkkrvhtis
Low Complexity Region (SEG)
MGAGISAGFAtetllstsspslNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKKRVHTIS
Disordered region (IsUnstruct)
***************************SCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNE****LTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEF************
Disordered Region (DISOPRED)
***********************DVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKY******************YARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLS************LYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKKR*H***
Disordered Region (DISEMBL)
MGAGISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKE**********
Disordered Region (DISPRO)
*********************LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKKRVHTI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAGISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKKRVHTIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9LEX0	290	F-box protein PP2-A13 OS=	yes	no	0.955	0.951	0.626	1e-103
Q9LN77	291	F-box protein PP2-A12 OS=	no	no	0.951	0.945	0.591	7e-98
Q9FJ80	291	F-box protein PP2-A14 OS=	no	no	0.972	0.965	0.567	2e-94
Q9CAN4	289	F-box protein PP2-A11 OS=	no	no	0.968	0.968	0.542	9e-88
Q9LF92	300	F-box protein PP2-A15 OS=	no	no	0.923	0.89	0.548	2e-87
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.858	0.911	0.296	2e-21
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.678	0.583	0.300	3e-19
O80494	289	F-box protein PP2-B15 OS=	no	no	0.830	0.830	0.234	2e-18
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.885	0.8	0.271	8e-18
Q9FLU7	251	Putative F-box protein PP	no	no	0.816	0.940	0.227	4e-17

>sp|Q9LEX0|P2A13_ARATH F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/281 (62%), Positives = 216/281 (76%), Gaps = 5/281 (1%)

Query: 1   MGAGISAG---FATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASS 57
           MGA IS G   F     + +    L D+PE+CV+ I   LDPPEIC+LA LN+ FR ASS
Sbjct: 1   MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASS 60

Query: 58  ADFLWETKLPSNYKYLVKKVLNE-SPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKV 116
           ADF+WE+KLP+NY+ +  KV +E +  KL KK++YA+LSQPN FD+ TKE+W+DK +G++
Sbjct: 61  ADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRL 120

Query: 117 CMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLF 176
           C+SIS+K+++ITGIDDRRYW+ I T+ESRF S AY+QQ WW E  GE E +FP GTYSLF
Sbjct: 121 CLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLF 180

Query: 177 FRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCL-YDPGNWVLYHV 235
           FR+QLGK SKR GRRICN E +HGWD+KPVRFQL+TS+ Q+AVS C L  +PG+W  YHV
Sbjct: 181 FRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPGSWSHYHV 240

Query: 236 GDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSE 276
           GDF V N   ST IKFSM QIDCTHTKGGLCIDSVLI P E
Sbjct: 241 GDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKE 281

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN77|P2A12_ARATH F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1

 Score =  357 bits (915), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 165/279 (59%), Positives = 216/279 (77%), Gaps = 4/279 (1%)

Query: 6   SAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK 65
           S+ F    +L    P L D+PE+CV+ I  +LDP EIC+ + LN+ FRGAS AD +WE+K
Sbjct: 15  SSCFGDRNILK---PGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESK 71

Query: 66  LPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSM 125
           LP NY+ +++K+L   P+ L K+ +YA LS+ N FD+ATK++W+DKR+  VC+SISAK +
Sbjct: 72  LPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGL 131

Query: 126 KITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKAS 185
            ITGIDDRRYW+ I T+ESRF SVAYLQQ WW E  GE++F FP GTYS+FFRLQLG++ 
Sbjct: 132 SITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSG 191

Query: 186 KRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAV-ENDQ 244
           K FGRR+CN EQVHGWD+KPVRFQL T +GQ + S+C L + GNW+ YH GD  V E+++
Sbjct: 192 KWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNR 251

Query: 245 TSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
           +STKIKFSM QIDCTHTKGGL +DSV++YPS  K++LK+
Sbjct: 252 SSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQLKR 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ80|P2A14_ARATH F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1

 Score =  345 bits (886), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/289 (56%), Positives = 215/289 (74%), Gaps = 8/289 (2%)

Query: 1   MGAGISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADF 60
           MGA  S+   +E         L DVPE+C++++FM+++PPEIC LA +NK+F  AS +D 
Sbjct: 1   MGAASSSIVRSEPFAGKLC-GLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDA 59

Query: 61  LWETKLPSNYKYLVKKVLNESPQ-----KLT--KKEIYARLSQPNRFDNATKEIWLDKRS 113
           +WE KLPSNYK+LV+++L +  Q     KL   KKEIYARL +PN FD  TKE WLDKRS
Sbjct: 60  VWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRS 119

Query: 114 GKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTY 173
           GKV ++IS K+MKITGIDDRRYW  I+++ESRF S+ YL+Q WW EA+G++ FEF  G Y
Sbjct: 120 GKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKY 179

Query: 174 SLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLY 233
           SL F++QLGK  ++ GR+ C+L+QVHGWD+KPVRFQLSTS+GQ A+SE  L + G WV +
Sbjct: 180 SLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDESGRWVYH 239

Query: 234 HVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLK 282
           H GDF VEN  +   +KFSM+QIDCTHTKGGLC+D V+I P E++ + K
Sbjct: 240 HAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYRGKYK 288

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN4|P2A11_ARATH F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1

 Score =  323 bits (828), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 158/291 (54%), Positives = 211/291 (72%), Gaps = 11/291 (3%)

Query: 1   MGAG-------ISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFR 53
           MG+G       +S+ +    LL    P L D+PESCV+ I  +LDP EIC+ + LN  F 
Sbjct: 1   MGSGFSLFQKNLSSCYGDRDLLQ---PGLGDLPESCVALILQNLDPVEICRFSKLNTAFH 57

Query: 54  GASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRS 113
           GAS ADF+WE+KLP +YK +++K+L   P  L K++I+  LS+ N FD   K+ W+DKR+
Sbjct: 58  GASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRT 117

Query: 114 GKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTY 173
           G +C+  SAK + ITGIDDRRYW+ I +++SRF SVAY+QQ WW +  GE++F FP GTY
Sbjct: 118 GGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTY 177

Query: 174 SLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLY 233
           S++FRLQLGK  KRFG ++ + EQVHGW++KPVRFQLST +GQ + S+C L + GNW  Y
Sbjct: 178 SVYFRLQLGKPGKRFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEAGNWSHY 237

Query: 234 HVGDFAV-ENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
           H GDF V ++  +STKIKFSM QIDCTHTKGGLC+DSV++YPS  K+RL +
Sbjct: 238 HAGDFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDRLMQ 288

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF92|P2A15_ARATH F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 153/279 (54%), Positives = 197/279 (70%), Gaps = 12/279 (4%)

Query: 19  SPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVL 78
            P L D+PESCV+ +FM+L PPEIC LA LN++FRGA+S+D +WE KLP NY+ L+  + 
Sbjct: 18  GPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLP 77

Query: 79  NESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQ 138
            E    L+KK+I+A LS+P  FD+  KE+W+D+ +G+VCM+ISA+ M ITGI+DRRYWN 
Sbjct: 78  PERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNW 137

Query: 139 IATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQV 198
           I TEESRFH VAYLQQ WW E  G + F  P G YSL FR+ LG+ +KR GRR+C+ E  
Sbjct: 138 IPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHFELT 197

Query: 199 HGWDVKPVRFQLSTSNGQKAVSECCLYD-----------PGNWVLYHVGDFAVENDQTST 247
           HGWD+KPVRF LSTS+GQ+A  E  L D            G W+ Y VG+F V   + ST
Sbjct: 198 HGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPST 257

Query: 248 KIKFSMMQIDCTHTKGGLCIDSVLIYP-SEFKERLKKRV 285
           +I++SM QIDCTH+KGGLC+DSV I P  + KE  +K V
Sbjct: 258 EIQWSMKQIDCTHSKGGLCVDSVFINPIGDVKEHKRKAV 296

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 134/277 (48%), Gaps = 29/277 (10%)

Query: 16  STSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVK 75
           S SSP  +  PE C+S I    +P + C  A ++KTF     +D +WE  LP++Y+ L+ 
Sbjct: 9   SESSP-FDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI- 66

Query: 76  KVLNESPQKL--TKKEIYARL-SQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDD 132
                 P ++  +KKE+Y  L + P  FD+  K +WL+K SGK C+ +SA ++ I   D+
Sbjct: 67  -----PPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDN 121

Query: 133 RRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEF--PQGTYSLFFRLQLGKASKRFGR 190
            +YW  I   ESRF  VA L+   W E  G        P+  YS +  +      K +G 
Sbjct: 122 PQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAY--IVFKGVDKCYGF 179

Query: 191 RICNLEQVHG-WDVKPVR----FQLSTSNGQKAVSECCLYDPGNWVLYHVGDF-----AV 240
           +   +E   G    +P R    F  +   G++ V +    + G W+   +G+F      +
Sbjct: 180 QNVAIEAAVGVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDG-WMEIELGEFFNDGGIM 238

Query: 241 ENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEF 277
           +ND+    I+ S ++    + K GL I  + I P++ 
Sbjct: 239 DNDE----IEMSALETKQLNRKCGLIIQGIEIRPAKI 271

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 20/216 (9%)

Query: 17  TSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKK 76
           T +   + +PE C+S +  H  P + C +A ++K+ + A+ +D +WE  LPS Y  LV  
Sbjct: 27  TRASRFDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVL- 85

Query: 77  VLNESPQKLTKKEIYARLSQPNRF-DNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRY 135
              +S   L+KKEI+  L+  +   +N  K  W++K SGK C  +SA  + I   D   Y
Sbjct: 86  ---QSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAY 142

Query: 136 WNQIATEESRFHSVAYLQQTWWCEAIGELEFE-FPQGT-YSLFFRLQLGKASKRFGRRIC 193
           W  I   ES+F  VA L+   W E  G++      +GT YS++   +        GR   
Sbjct: 143 WKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTAN-----GRS-- 195

Query: 194 NLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGN 229
                +G+D+ PV   +    G+ A  +   ++ GN
Sbjct: 196 -----YGFDLVPVEAGVGFV-GKVATKKSVYFESGN 225

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 59/299 (19%)

Query: 25  VPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQK 84
           +PE+CV++I     P +    A ++  FR A  +DF+WE  LP++Y +++ +  +  P +
Sbjct: 3   LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISR--STDPHR 60

Query: 85  L--TKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATE 142
           +  +KKE+Y  L +    DN  K   ++K SGK+   +S++ + IT  D R YW+     
Sbjct: 61  IFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRS 120

Query: 143 ESRFHSVAYLQQTWWCEAIGELEFEF--PQGTYSLFFRLQLGKASKRFGRRICNLEQVHG 200
           +SRF     L  T W E IG+++     P   Y  +  +++               + +G
Sbjct: 121 DSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKV-------------TSRAYG 167

Query: 201 WDVKPVRFQLSTSNGQKAVSEC---CL--------------------------------- 224
            D+ P    +   NG+K +      CL                                 
Sbjct: 168 LDLVPAETSIKVGNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPE 227

Query: 225 -YDPGNWVLYHVGDFAVENDQ--TSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKER 280
             D G W+   +G+F   + +     ++  S+ ++     KGG+ ID + + P   K R
Sbjct: 228 VRDDG-WMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPKPLKVR 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 17/273 (6%)

Query: 14  LLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYL 73
           ++S  +   + +PE C+S+I     P + C  A ++KTF  A S+D +W+  LP  Y+ L
Sbjct: 53  IVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESL 112

Query: 74  VKKVLNESPQKLTKKEIYARLSQ-PNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDD 132
           V +    S    +KKE+Y  L   P   ++  K  WL+K SGK C+ +S+K + IT    
Sbjct: 113 VSR----SRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSS 168

Query: 133 RRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEF--PQGTYSLFFRLQ-------LGK 183
             YW  I+  ESRF+ +A L    W E  G+       P   YS +   +       LG 
Sbjct: 169 PEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGH 228

Query: 184 ASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVEND 243
                G  +   E    +               + V++    + G W+   +G+F   N+
Sbjct: 229 LPVEVGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDG-WMEAELGEFF--NE 285

Query: 244 QTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSE 276
           +   +I+FS+++I     K GL I  +   P++
Sbjct: 286 ERCDEIEFSVIEIKSPSWKSGLIIQGIEFRPTK 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 123/264 (46%), Gaps = 28/264 (10%)

Query: 24  DVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQ 83
           D+PE C++++     P + C+++ ++K  R A+ ++  WE  LPS+Y+  +   L+    
Sbjct: 5   DLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLS---- 60

Query: 84  KLTKKEIYARLSQ-PNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATE 142
           + + K+++ R  + P   ++     W++KRSGK C  +SA+ + I  +D   +W  ++  
Sbjct: 61  RFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIP 120

Query: 143 ESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQV--HG 200
           +SRF  VA L    W E  G++       + SL     L KA+      +   +++   G
Sbjct: 121 DSRFEEVAGLLMVCWFEIRGKI-------STSL-----LSKATNYSAYLVFKEQEMGSFG 168

Query: 201 WDVKPVRFQLSTSNGQKAVSECCLYDPG-------NWVLYHVGDFAVENDQTSTKIKFSM 253
           ++  P+     ++  +   +       G        W+   +G++ V  D    +I+ S+
Sbjct: 169 FESLPLEVSFRSTRTEVYNNRRVFLKSGTQESREDGWLEIELGEYYVGFDD--EEIEMSV 226

Query: 254 MQIDCTHTKGGLCIDSVLIYPSEF 277
           ++      KGG+ +  + I P E 
Sbjct: 227 LETREGGWKGGIIVQGIEIRPKEL 250

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
224120104	285	f-box family protein [Populus trichocarp	0.979	0.992	0.690	1e-118
224136918	288	f-box family protein [Populus trichocarp	0.906	0.909	0.714	1e-113
255539541	286	ATPP2-A13, putative [Ricinus communis] g	0.975	0.986	0.678	1e-111
356575927	293	PREDICTED: F-box protein PP2-A13-like [G	0.979	0.965	0.654	1e-110
356535898	293	PREDICTED: F-box protein PP2-A13-like [G	0.979	0.965	0.654	1e-109
225455447	279	PREDICTED: F-box protein PP2-A13 [Vitis	0.958	0.992	0.645	1e-109
225426781	283	PREDICTED: F-box protein PP2-A12 [Vitis	0.972	0.992	0.656	1e-109
297742595	309	unnamed protein product [Vitis vinifera]	0.965	0.902	0.653	1e-108
224127502	294	f-box family protein [Populus trichocarp	0.979	0.962	0.622	1e-106
356530896	289	PREDICTED: F-box protein PP2-A13-like [G	0.975	0.975	0.647	1e-106

>gi|224120104|ref|XP_002318243.1| f-box family protein [Populus trichocarpa] gi|222858916|gb|EEE96463.1| f-box family protein [Populus trichocarpa]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/284 (69%), Positives = 239/284 (84%), Gaps = 1/284 (0%)

Query: 1   MGAGISA-GFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSAD 59
           MGAG S+    +E   S   P+L+D+PES V+SI MHLDPPEICKLA +NKTF GAS AD
Sbjct: 1   MGAGSSSLALESEGGSSPVRPNLDDIPESSVASILMHLDPPEICKLAKVNKTFHGASLAD 60

Query: 60  FLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMS 119
           F+WETKLPSNYKYLV+K+L +SP+ L+KKEIYARL QPN F++ TK++WLDK SGK+C++
Sbjct: 61  FVWETKLPSNYKYLVEKILGQSPESLSKKEIYARLCQPNCFEDGTKQVWLDKSSGKICVA 120

Query: 120 ISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRL 179
           +S K+++ITGIDDRRYWN I++EESRF+++AYLQQ WW E +GELEFEFP GTYSLFF+L
Sbjct: 121 VSYKALRITGIDDRRYWNHISSEESRFNTIAYLQQIWWLEVVGELEFEFPAGTYSLFFKL 180

Query: 180 QLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFA 239
           QLGK SK+FGRR CN++QVHGW  KPVRFQLSTSNGQ+A SEC L+  GNW  Y VGDF 
Sbjct: 181 QLGKTSKKFGRRACNVDQVHGWGAKPVRFQLSTSNGQQASSECYLHQQGNWGHYRVGDFV 240

Query: 240 VENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
           V+N  T  K+KFSMMQIDCTHTKGG+C+DSVLI PSEF+E+LK+
Sbjct: 241 VDNKNTPMKLKFSMMQIDCTHTKGGVCLDSVLIRPSEFREKLKQ 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136918|ref|XP_002322448.1| f-box family protein [Populus trichocarpa] gi|222869444|gb|EEF06575.1| f-box family protein [Populus trichocarpa]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/263 (71%), Positives = 227/263 (86%), Gaps = 1/263 (0%)

Query: 22  LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNES 81
           L+DVPE CVSSIFM+LDPPEICKLA LNKTF GAS ADF+WETKLPSNYK+LV+KVL +S
Sbjct: 25  LDDVPECCVSSIFMYLDPPEICKLAKLNKTFHGASLADFVWETKLPSNYKFLVEKVLGQS 84

Query: 82  PQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIAT 141
           P+ L+KKEIYARL +PN FD   K++WLDK SGK+C+++S K+++ITGIDDRRYWN I++
Sbjct: 85  PESLSKKEIYARLCRPNCFDKGAKQVWLDKSSGKICVAVSYKALRITGIDDRRYWNHISS 144

Query: 142 EESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGW 201
           EESRF+++AYLQQ WW E  GELEFEFP GTYSLFFRLQLGK SK+ GRR CN+++VHGW
Sbjct: 145 EESRFNTIAYLQQIWWFEVGGELEFEFPAGTYSLFFRLQLGKTSKKLGRRTCNVDRVHGW 204

Query: 202 DVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTS-TKIKFSMMQIDCTH 260
           D+KPVRFQLSTSNGQ+A SEC L+  GNW  YH GDF V +  T+  K++FSMMQIDCTH
Sbjct: 205 DIKPVRFQLSTSNGQQASSECYLHQQGNWGHYHAGDFVVYSSNTAPLKLRFSMMQIDCTH 264

Query: 261 TKGGLCIDSVLIYPSEFKERLKK 283
           TKGG+C+DSVLI PSEF+E+LK+
Sbjct: 265 TKGGVCLDSVLICPSEFREKLKQ 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539541|ref|XP_002510835.1| ATPP2-A13, putative [Ricinus communis] gi|223549950|gb|EEF51437.1| ATPP2-A13, putative [Ricinus communis]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/286 (67%), Positives = 233/286 (81%), Gaps = 4/286 (1%)

Query: 1   MGAGISAGFATETLLSTSS--PSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSA 58
           MGAG S+ FA+++    SS  P+L DVPESC+SSI M LDPPEICKLA LN+TF GAS A
Sbjct: 1   MGAGFSS-FASDSNGDPSSLGPTLGDVPESCISSILMCLDPPEICKLASLNRTFHGASLA 59

Query: 59  DFLWETKLPSNYKYLVKKVLNESP-QKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVC 117
           D +WETKLP NYK+LV KVL ESP Q L+KK+IYARL QPN FD  TK++WLDK SGK+C
Sbjct: 60  DLVWETKLPPNYKFLVMKVLQESPAQVLSKKQIYARLCQPNCFDGGTKQVWLDKSSGKIC 119

Query: 118 MSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFF 177
           +S+S K+++ITGIDDRRYWN I++EESRF ++AYLQQ WW E +GELEFEFP   YSLFF
Sbjct: 120 LSVSYKALRITGIDDRRYWNHISSEESRFQTIAYLQQIWWFEVVGELEFEFPPDKYSLFF 179

Query: 178 RLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGD 237
           RLQLGKASKRFGRR+ N++QVHGW++KPV+FQLS SNGQ+A SE  L+  GNWV Y VGD
Sbjct: 180 RLQLGKASKRFGRRVSNIDQVHGWNIKPVQFQLSASNGQQASSEYYLHKQGNWVHYRVGD 239

Query: 238 FAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
           F VEN  T  KIKFSM QIDCTHTKGG+C+D+V I PS  +E+L++
Sbjct: 240 FVVENPNTHVKIKFSMTQIDCTHTKGGVCLDAVFICPSALREKLEQ 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575927|ref|XP_003556087.1| PREDICTED: F-box protein PP2-A13-like [Glycine max]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/292 (65%), Positives = 229/292 (78%), Gaps = 9/292 (3%)

Query: 1   MGAGISAGFATE--------TLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTF 52
           MGAG+S+    E        +    S P L D PESC+SS+FM+LDPP+ICKLA +N+ F
Sbjct: 1   MGAGVSSTNKAEKDGGGSISSSSRDSRPGLGDFPESCISSLFMNLDPPDICKLARVNRAF 60

Query: 53  RGASSADFLWETKLPSNYKYLVKKVLNE-SPQKLTKKEIYARLSQPNRFDNATKEIWLDK 111
             ASSADF+WE+KLP +YK+L  KVL E +   +TKKEIYA+L  PNRFD  TKE+WLDK
Sbjct: 61  HRASSADFVWESKLPPSYKFLANKVLGEENIATMTKKEIYAKLCLPNRFDGGTKEVWLDK 120

Query: 112 RSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQG 171
            SG+VC+ +S+KS+KITGIDDRRYWN I TEESRF SVAYLQQ WW E +GELEFEFP G
Sbjct: 121 CSGQVCLFMSSKSLKITGIDDRRYWNYIPTEESRFQSVAYLQQMWWVEVVGELEFEFPVG 180

Query: 172 TYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWV 231
           +YSL FRLQLGKASKR GRR+CN++QVHGWD+KPVRFQLSTS+GQ ++SEC L  PG WV
Sbjct: 181 SYSLVFRLQLGKASKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQSSLSECYLRGPGEWV 240

Query: 232 LYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
            Y+VGDF VE  +    IKFS+ QIDCTHTKGGLC+DS +I P+EFKERLK+
Sbjct: 241 YYNVGDFVVEKPKEPINIKFSLAQIDCTHTKGGLCVDSAIICPTEFKERLKQ 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535898|ref|XP_003536479.1| PREDICTED: F-box protein PP2-A13-like [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/292 (65%), Positives = 229/292 (78%), Gaps = 9/292 (3%)

Query: 1   MGAGISAGFATE--------TLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTF 52
           MGAG+S+    E        +    S P L D+PESC+SS+FM+LDPP+ICKLA +N+ F
Sbjct: 1   MGAGVSSCNKVEKEGGGSISSSSRDSRPGLGDIPESCISSLFMNLDPPDICKLARVNRAF 60

Query: 53  RGASSADFLWETKLPSNYKYLVKKVLNE-SPQKLTKKEIYARLSQPNRFDNATKEIWLDK 111
             ASSADF+WE+KLP +YK+L  KVL E +   +TKKEIYA+L  PNRFD  TKE+WLDK
Sbjct: 61  HRASSADFVWESKLPPSYKFLANKVLGEENIATMTKKEIYAKLCLPNRFDGGTKEVWLDK 120

Query: 112 RSGKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQG 171
            SG+VC+ +S+KS+KITGIDDRRYWN I TEESRF SVAYLQQ WW E +GELEFEFP G
Sbjct: 121 CSGQVCLFMSSKSLKITGIDDRRYWNYIPTEESRFQSVAYLQQMWWVEVVGELEFEFPVG 180

Query: 172 TYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWV 231
           +YSL FRLQLGKASKR GRR+CN++QVHGWD+KP+RFQLSTS+GQ ++SEC L  PG WV
Sbjct: 181 SYSLIFRLQLGKASKRLGRRVCNVDQVHGWDIKPIRFQLSTSDGQLSLSECYLCGPGEWV 240

Query: 232 LYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
            YHVGDF VE       IKFS+ QIDCTHTKGGLC+DS +I P+EFKERLK+
Sbjct: 241 YYHVGDFVVEKPNEPINIKFSLAQIDCTHTKGGLCVDSAIICPTEFKERLKQ 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455447|ref|XP_002279586.1| PREDICTED: F-box protein PP2-A13 [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/282 (64%), Positives = 224/282 (79%), Gaps = 5/282 (1%)

Query: 1   MGAGISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADF 60
           MGA  SA  A        S  L+DVPE+CV+ + M+LDPP+IC LA L+KTF  ASSADF
Sbjct: 1   MGAVFSAACA-----QPPSTGLSDVPENCVAEVLMYLDPPQICNLARLSKTFHMASSADF 55

Query: 61  LWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSI 120
           +WE+KLPSNYK+LVKK+L E P+ L+KKEIYARL Q N FD A KE+WL+K  G +C ++
Sbjct: 56  VWESKLPSNYKFLVKKLLAEDPENLSKKEIYARLCQANSFDGANKEVWLEKSYGGICFAV 115

Query: 121 SAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQ 180
           S K+++ITGIDDRRYW  +  EESRFHS+AYLQQ WW E  GELEFEFP GTYS+FFR+Q
Sbjct: 116 SWKALRITGIDDRRYWKHLPAEESRFHSMAYLQQIWWFEVEGELEFEFPAGTYSIFFRIQ 175

Query: 181 LGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAV 240
           LGK S+R GR++CN+E+VHGWD+KPVRFQLSTS+GQ A+S+C L +PG WV YH GDF V
Sbjct: 176 LGKTSRRLGRKVCNIERVHGWDIKPVRFQLSTSDGQHALSQCYLCEPGKWVHYHAGDFMV 235

Query: 241 ENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLK 282
           E   TS K+KFSM QIDCTHTKGGLC+DSV I P+E+++R+K
Sbjct: 236 EKPNTSMKVKFSMTQIDCTHTKGGLCLDSVFICPAEYRDRVK 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426781|ref|XP_002282844.1| PREDICTED: F-box protein PP2-A12 [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/282 (65%), Positives = 217/282 (76%), Gaps = 1/282 (0%)

Query: 1   MGAGISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADF 60
           MG G+S   A E     S P L D+PE CV+ +  +LDPPEICKLA LN+ FRGAS AD 
Sbjct: 1   MGTGVSL-LACENEGCPSRPRLGDLPEDCVALVLSYLDPPEICKLAKLNRAFRGASRADL 59

Query: 61  LWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSI 120
           +WE KLPSNY  +++KV  + P+ L KKEIYARL QPN FD  TK+ WLDKR+G VC+SI
Sbjct: 60  VWEPKLPSNYCLVIEKVFKDFPENLCKKEIYARLCQPNPFDGGTKKAWLDKRTGGVCLSI 119

Query: 121 SAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQ 180
           S+K + ITGIDDRRYW  I TEESRF++VAY+QQ WW E  GE++F FP GTYS+FFRLQ
Sbjct: 120 SSKGLAITGIDDRRYWTYIPTEESRFNTVAYVQQIWWLEVDGEVDFPFPAGTYSIFFRLQ 179

Query: 181 LGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAV 240
           LG+ASKR GRRICN E VHGWD+KPVRFQL TS+GQ A S+C L +PG W+ YH  DF V
Sbjct: 180 LGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHATSQCFLDEPGRWIQYHAADFVV 239

Query: 241 ENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLK 282
           +N    TKIKFSM QIDCTHTKGGLC+DSVLIYP EF+ERLK
Sbjct: 240 DNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYPREFRERLK 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742595|emb|CBI34744.3| unnamed protein product [Vitis vinifera]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/280 (65%), Positives = 215/280 (76%), Gaps = 1/280 (0%)

Query: 1   MGAGISAGFATETLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADF 60
           MG G+S   A E     S P L D+PE CV+ +  +LDPPEICKLA LN+ FRGAS AD 
Sbjct: 1   MGTGVSL-LACENEGCPSRPRLGDLPEDCVALVLSYLDPPEICKLAKLNRAFRGASRADL 59

Query: 61  LWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSI 120
           +WE KLPSNY  +++KV  + P+ L KKEIYARL QPN FD  TK+ WLDKR+G VC+SI
Sbjct: 60  VWEPKLPSNYCLVIEKVFKDFPENLCKKEIYARLCQPNPFDGGTKKAWLDKRTGGVCLSI 119

Query: 121 SAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQ 180
           S+K + ITGIDDRRYW  I TEESRF++VAY+QQ WW E  GE++F FP GTYS+FFRLQ
Sbjct: 120 SSKGLAITGIDDRRYWTYIPTEESRFNTVAYVQQIWWLEVDGEVDFPFPAGTYSIFFRLQ 179

Query: 181 LGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAV 240
           LG+ASKR GRRICN E VHGWD+KPVRFQL TS+GQ A S+C L +PG W+ YH  DF V
Sbjct: 180 LGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHATSQCFLDEPGRWIQYHAADFVV 239

Query: 241 ENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKER 280
           +N    TKIKFSM QIDCTHTKGGLC+DSVLIYP EF+ER
Sbjct: 240 DNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYPREFRER 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127502|ref|XP_002320090.1| f-box family protein [Populus trichocarpa] gi|222860863|gb|EEE98405.1| f-box family protein [Populus trichocarpa]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 3/286 (1%)

Query: 1   MGAGISAGFATETLLS--TSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSA 58
           MGA +S     +T     +S P L D+PESC++ + MHLDPP+ICKLA LN+ F GASSA
Sbjct: 1   MGANLSCATLCDTNGEGPSSKPRLGDIPESCLALVLMHLDPPDICKLARLNRAFHGASSA 60

Query: 59  DFLWETKLPSNYKYLVKKVLNE-SPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVC 117
           DF+WE+KLPSNYK++ +KVL+E +   L KK++YAR+ +PN FD  TKE+WLDK++G  C
Sbjct: 61  DFIWESKLPSNYKFICEKVLDEKTVVGLEKKDVYARMCRPNPFDGGTKEVWLDKKTGGAC 120

Query: 118 MSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFF 177
            SIS+K + ITGIDDRRYWN I+TEESRFH+VAYLQQ WW E  GE EFEFP+G YSLFF
Sbjct: 121 FSISSKGLAITGIDDRRYWNHISTEESRFHTVAYLQQIWWFEIDGEFEFEFPKGMYSLFF 180

Query: 178 RLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGD 237
           RLQLG++SKR GRR+CN E +HGWD+KPVRFQL+TS+GQ+A S+C L  PGNWV YH GD
Sbjct: 181 RLQLGRSSKRMGRRVCNSEHIHGWDIKPVRFQLTTSDGQRAASKCFLDTPGNWVYYHAGD 240

Query: 238 FAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
           F V+      KIKFSM QIDCTHTKGGLC+D+  +YPS     + K
Sbjct: 241 FVVDRPSELMKIKFSMTQIDCTHTKGGLCVDAAFVYPSSIGSEICK 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530896|ref|XP_003534015.1| PREDICTED: F-box protein PP2-A13-like [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/289 (64%), Positives = 225/289 (77%), Gaps = 7/289 (2%)

Query: 1   MGAGISAGFATE-----TLLSTSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGA 55
           MGAG+S   ATE     T   +S  SL+D+PE+C+SS+ M+ DP EIC LA +NKTF  A
Sbjct: 1   MGAGVSTT-ATENDDGGTFSLSSETSLDDIPENCISSMMMNFDPQEICSLARVNKTFHRA 59

Query: 56  SSADFLWETKLPSNYKYLVKKVLNE-SPQKLTKKEIYARLSQPNRFDNATKEIWLDKRSG 114
           SSA+F+WE+KLP NYK+L+ KVL E +   +TKKEIYA+L QPN FD  TKE+WLD+ SG
Sbjct: 60  SSANFVWESKLPQNYKFLLNKVLGEQNLGSMTKKEIYAKLCQPNFFDGGTKEVWLDRSSG 119

Query: 115 KVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYS 174
           +VCM IS+KS KITGIDDRRYWN I TEESRF SVAYLQQ WW E IGELEFEFP+G YS
Sbjct: 120 QVCMFISSKSFKITGIDDRRYWNYIPTEESRFKSVAYLQQMWWVEVIGELEFEFPKGNYS 179

Query: 175 LFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYH 234
           +FF+LQLGK SKR GRR+CNL+QVHGWD+KPVRFQLSTS+GQ+++S+C L     W  YH
Sbjct: 180 VFFKLQLGKPSKRLGRRVCNLDQVHGWDIKPVRFQLSTSDGQRSLSQCYLRGSREWAYYH 239

Query: 235 VGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSEFKERLKK 283
           VGDFA++     T I FS+ QIDCTHTKGGLCID V+I P EF + LK+
Sbjct: 240 VGDFAIDKPNGPTNINFSLAQIDCTHTKGGLCIDGVVICPKEFTQGLKQ 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2100997	291	PP2-A13 "phloem protein 2-A13"	0.955	0.948	0.620	3.4e-93
TAIR|locus:2195042	291	PP2-A12 "phloem protein 2-A12"	0.899	0.893	0.613	3.1e-90
TAIR|locus:2173078	291	PP2-A14 "phloem protein 2-A14"	0.896	0.890	0.593	1.1e-87
TAIR|locus:2015238	289	PP2-A11 "phloem protein 2-A11"	0.892	0.892	0.579	2.4e-85
TAIR|locus:2085236	300	PP2-A15 "phloem protein 2-A15"	0.906	0.873	0.551	5.4e-79
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.539	0.464	0.339	1.7e-25
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.512	0.462	0.354	3e-24
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.640	0.640	0.279	3e-24
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.837	0.889	0.293	3.8e-23
TAIR|locus:2011791	282	PP2-B14 "phloem protein 2-B14"	0.647	0.663	0.307	7.6e-22

TAIR|locus:2100997 PP2-A13 "phloem protein 2-A13" [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 175/282 (62%), Positives = 213/282 (75%)

Query:     1 MGAGISAG---FAXXXXXXXXXXXXNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASS 57
             MGA IS G   F              D+PE+CV+ I   LDPPEIC+LA LN+ FR ASS
Sbjct:     1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASS 60

Query:    58 ADFLWETKLPSNYKYLVKKVLNE-SPQKLTKKEIYARLSQPNRFDNATK-EIWLDKRSGK 115
             ADF+WE+KLP+NY+ +  KV +E +  KL KK++YA+LSQPN FD+ TK E+W+DK +G+
Sbjct:    61 ADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKQELWIDKNTGR 120

Query:   116 VCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSL 175
             +C+SIS+K+++ITGIDDRRYW+ I T+ESRF S AY+QQ WW E  GE E +FP GTYSL
Sbjct:   121 LCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSL 180

Query:   176 FFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYD-PGNWVLYH 234
             FFR+QLGK SKR GRRICN E +HGWD+KPVRFQL+TS+ Q+AVS C L + PG+W  YH
Sbjct:   181 FFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPGSWSHYH 240

Query:   235 VGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPSE 276
             VGDF V N   ST IKFSM QIDCTHTKGGLCIDSVLI P E
Sbjct:   241 VGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKE 282

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2195042 PP2-A12 "phloem protein 2-A12" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 160/261 (61%), Positives = 209/261 (80%)

Query:    24 DVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQ 83
             D+PE+CV+ I  +LDP EIC+ + LN+ FRGAS AD +WE+KLP NY+ +++K+L   P+
Sbjct:    30 DLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPE 89

Query:    84 KLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEE 143
              L K+ +YA LS+ N FD+ATK++W+DKR+  VC+SISAK + ITGIDDRRYW+ I T+E
Sbjct:    90 NLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDE 149

Query:   144 SRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDV 203
             SRF SVAYLQQ WW E  GE++F FP GTYS+FFRLQLG++ K FGRR+CN EQVHGWD+
Sbjct:   150 SRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDI 209

Query:   204 KPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAV-ENDQTSTKIKFSMMQIDCTHTK 262
             KPVRFQL T +GQ + S+C L + GNW+ YH GD  V E++++STKIKFSM QIDCTHTK
Sbjct:   210 KPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMTQIDCTHTK 269

Query:   263 GGLCIDSVLIYPSEFKERLKK 283
             GGL +DSV++YPS  K++LK+
Sbjct:   270 GGLSLDSVVVYPSSCKDQLKR 290

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2173078 PP2-A14 "phloem protein 2-A14" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 158/266 (59%), Positives = 207/266 (77%)

Query:    24 DVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQ 83
             DVPE+C++++FM+++PPEIC LA +NK+F  AS +D +WE KLPSNYK+LV+++L +  Q
Sbjct:    23 DVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQ 82

Query:    84 -----KLT--KKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYW 136
                  KL   KKEIYARL +PN FD  TKE WLDKRSGKV ++IS K+MKITGIDDRRYW
Sbjct:    83 VGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYW 142

Query:   137 NQIATEESRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLE 196
               I+++ESRF S+ YL+Q WW EA+G++ FEF  G YSL F++QLGK  ++ GR+ C+L+
Sbjct:   143 EHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLGKPIRKCGRKTCSLD 202

Query:   197 QVHGWDVKPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVENDQTSTKIKFSMMQI 256
             QVHGWD+KPVRFQLSTS+GQ A+SE  L + G WV +H GDF VEN  +   +KFSM+QI
Sbjct:   203 QVHGWDIKPVRFQLSTSDGQCAMSERHLDESGRWVYHHAGDFVVENQNSPVWVKFSMLQI 262

Query:   257 DCTHTKGGLCIDSVLIYPSEFKERLK 282
             DCTHTKGGLC+D V+I P E++ + K
Sbjct:   263 DCTHTKGGLCLDCVIICPFEYRGKYK 288

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2015238 PP2-A11 "phloem protein 2-A11" [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 150/259 (57%), Positives = 198/259 (76%)

Query:    24 DVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQ 83
             D+PESCV+ I  +LDP EIC+ + LN  F GAS ADF+WE+KLP +YK +++K+L   P 
Sbjct:    28 DLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPD 87

Query:    84 KLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEE 143
              L K++I+  LS+ N FD   K+ W+DKR+G +C+  SAK + ITGIDDRRYW+ I +++
Sbjct:    88 NLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDD 147

Query:   144 SRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDV 203
             SRF SVAY+QQ WW +  GE++F FP GTYS++FRLQLGK  KRFG ++ + EQVHGW++
Sbjct:   148 SRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGKRFGWKVVDTEQVHGWNI 207

Query:   204 KPVRFQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAV-ENDQTSTKIKFSMMQIDCTHTK 262
             KPVRFQLST +GQ + S+C L + GNW  YH GDF V ++  +STKIKFSM QIDCTHTK
Sbjct:   208 KPVRFQLSTEDGQHSSSQCMLTEAGNWSHYHAGDFVVGKSKSSSTKIKFSMTQIDCTHTK 267

Query:   263 GGLCIDSVLIYPSEFKERL 281
             GGLC+DSV++YPS  K+RL
Sbjct:   268 GGLCVDSVVVYPSSCKDRL 286

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2085236 PP2-A15 "phloem protein 2-A15" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 151/274 (55%), Positives = 195/274 (71%)

Query:    24 DVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQ 83
             D+PESCV+ +FM+L PPEIC LA LN++FRGA+S+D +WE KLP NY+ L+  +  E   
Sbjct:    23 DIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYH 82

Query:    84 KLTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEE 143
              L+KK+I+A LS+P  FD+  KE+W+D+ +G+VCM+ISA+ M ITGI+DRRYWN I TEE
Sbjct:    83 SLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEE 142

Query:   144 SRFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDV 203
             SRFH VAYLQQ WW E  G + F  P G YSL FR+ LG+ +KR GRR+C+ E  HGWD+
Sbjct:   143 SRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHFELTHGWDL 202

Query:   204 KPVRFQLSTSNGQKAVSECCLYDP-----------GNWVLYHVGDFAVENDQTSTKIKFS 252
             KPVRF LSTS+GQ+A  E  L D            G W+ Y VG+F V   + ST+I++S
Sbjct:   203 KPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPSTEIQWS 262

Query:   253 MMQIDCTHTKGGLCIDSVLIYP-SEFKERLKKRV 285
             M QIDCTH+KGGLC+DSV I P  + KE  +K V
Sbjct:   263 MKQIDCTHSKGGLCVDSVFINPIGDVKEHKRKAV 296

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 56/165 (33%), Positives = 88/165 (53%)

Query:    25 VPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQK 84
             +PE C+S +  H  P + C +A ++K+ + A+ +D +WE  LPS Y  LV +  N     
Sbjct:    35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANH---- 90

Query:    85 LTKKEIYARLSQPNRF-DNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEE 143
             L+KKEI+  L+  +   +N  K  W++K SGK C  +SA  + I   D   YW  I   E
Sbjct:    91 LSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPE 150

Query:   144 SRFHSVAYLQQTWWCEAIGELEFEF-PQGT-YSLF--FRLQLGKA 184
             S+F  VA L+   W E  G++      +GT YS++  F+   G++
Sbjct:   151 SKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRS 195

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 55/155 (35%), Positives = 80/155 (51%)

Query:    25 VPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQK 84
             +PE C+S+I     P + C  A ++KTF  A S+D +W+  LP  Y+ LV +    S   
Sbjct:    64 LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR----SRVF 119

Query:    85 LTKKEIYARLSQ-PNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEE 143
              +KKE+Y  L   P   ++  K  WL+K SGK C+ +S+K + IT      YW  I+  E
Sbjct:   120 ASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPE 179

Query:   144 SRFHSVAYLQQTWWCEAIGELEFE-FPQGT-YSLF 176
             SRF+ +A L    W E  G+        GT YS +
Sbjct:   180 SRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAY 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 57/204 (27%), Positives = 98/204 (48%)

Query:    25 VPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQK 84
             +PE+CV++I     P +    A ++  FR A  +DF+WE  LP++Y +++ +  +  P +
Sbjct:     3 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISR--STDPHR 60

Query:    85 L--TKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATE 142
             +  +KKE+Y  L +    DN  K   ++K SGK+   +S++ + IT  D R YW+     
Sbjct:    61 IFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRS 120

Query:   143 ESRFHSVAYLQQTWWCEAIGELEFEF--PQGTYSLFFRLQLGKASKRFGRRICNLEQVHG 200
             +SRF     L  T W E IG+++     P   Y  +  +   K + R           +G
Sbjct:   121 DSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIM---KVTSR----------AYG 167

Query:   201 WDVKPVRFQLSTSNGQKAVSECCL 224
              D+ P    +   NG+K +    L
Sbjct:   168 LDLVPAETSIKVGNGEKKIKSTYL 191

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 77/262 (29%), Positives = 128/262 (48%)

Query:    26 PESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKL 85
             PE C+S I    +P + C  A ++KTF     +D +WE  LP++Y+ L+       P ++
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIP------PSRV 71

Query:    86 --TKKEIYARL-SQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATE 142
               +KKE+Y  L + P  FD+  K +WL+K SGK C+ +SA ++ I   D+ +YW  I   
Sbjct:    72 FSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query:   143 ESRFHSVAYLQQTWWCEAIGELEFEF--PQGTYSLFFRLQLGKASKRFGRRICNLEQVHG 200
             ESRF  VA L+   W E  G        P+  YS +   + G   K +G +   +E   G
Sbjct:   132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFK-G-VDKCYGFQNVAIEAAVG 189

Query:   201 W-DVKPVR----FQLSTSNGQKAVSECCLYDPGNWVLYHVGDFAVEND-QTSTKIKFSMM 254
                 +P R    F  +   G++ V +    + G W+   +G+F  +     + +I+ S +
Sbjct:   190 VVGQEPSRRLICFSEAIRRGRRNVVKPKQREDG-WMEIELGEFFNDGGIMDNDEIEMSAL 248

Query:   255 QIDCTHTKGGLCIDSVLIYPSE 276
             +    + K GL I  + I P++
Sbjct:   249 ETKQLNRKCGLIIQGIEIRPAK 270

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011791 PP2-B14 "phloem protein 2-B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 63/205 (30%), Positives = 99/205 (48%)

Query:    25 VPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQK 84
             +PE+C+++I     P +    + ++  FR A  +DF+WE  LPS+YK L+ +  +     
Sbjct:     4 LPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNI 63

Query:    85 LTKKEIYARLSQPNRFDNATKEIWLDKRSGKVCMSISAKSMKITGIDDRRYWNQIATEES 144
              +KKEIY  L      DNA K   ++K SGK+   +SA+ + IT  D   YW+     +S
Sbjct:    64 SSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDS 123

Query:   145 RFHSVAYLQQTWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFGRR-ICNLEQ-VHGWD 202
             RF   A L  T   E  G+++      T  L        A+ R+G   I  + +  +G D
Sbjct:   124 RFSESAELIITDRLEIEGKIQ------TRVL-------SANTRYGAYLIVKVTKGAYGLD 170

Query:   203 VKPVRFQLSTSNGQKAVSE---CCL 224
             + P    + + NGQ + S    CCL
Sbjct:   171 LVPAETSIKSKNGQISKSATYLCCL 195

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LEX0	P2A13_ARATH	No assigned EC number	0.6263	0.9550	0.9517	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam14299	154	pfam14299, PP2, Phloem protein 2	4e-57
pfam12937	47	pfam12937, F-box-like, F-box-like	1e-04
pfam00646	48	pfam00646, F-box, F-box domain	0.003

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  180 bits (459), Expect = 4e-57
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 20/168 (11%)

Query: 114 GKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEF--PQG 171
           GK C  +SA+++ IT  DD RYW  I   ESRF  VA L    W E  G++      P  
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 172 TYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNGQKAVSECCLYDP---- 227
           TYS +   +L              ++ +GWD KPV F +S  +GQK+  E  +  P    
Sbjct: 61  TYSAYLVFKL-------------ADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPEKRG 107

Query: 228 GNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCIDSVLIYPS 275
             W+   VG+F  E  +   +++FSM ++D  H KGGL +D + I P 
Sbjct: 108 DGWMEIEVGEFFNEGGE-DGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 22 LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLW 62
          L+D+P+  +  IF +LDP ++ +LAL+ + +R  +S D LW
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLW 41

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 20 PSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKL 66
           SL D+P+  +  I   LDP ++ +L+L++K +R    +  LW+ +L
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.55
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.17
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.16
PF06881	109	Elongin_A: RNA polymerase II transcription factor	92.48
KOG3926	332	consensus F-box proteins [Amino acid transport and	85.46

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=2.8e-61  Score=414.05  Aligned_cols=148  Identities=36%  Similarity=0.709  Sum_probs=137.0

Q ss_pred             CceEEEEeeccceeecCCCCCceeeeeccccccccceeEeeeeEEEEeeEEeeec--CCceeEEEEEEEeccccccccce
Q 022971          114 GKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEF--PQGTYSLFFRLQLGKASKRFGRR  191 (289)
Q Consensus       114 GkkCymLsAR~L~ItWgdd~~YW~Wis~peSRF~EVAeL~~VcWLEI~Gki~t~l--p~t~Y~ay~v~kl~~~~~~~~~~  191 (289)
                      ||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++  |+|+|+||||||++         
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~---------   71 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLK---------   71 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEec---------
Confidence            8999999999999999999999999999999999999999999999999999995  99999999999994         


Q ss_pred             eecccccccccccceEEEEEecCCce--eeeeeec--cCCCCEEEEEeeeEEecCCCCccEEEEEEEEeeCCCccccEEE
Q 022971          192 ICNLEQVHGWDVKPVRFQLSTSNGQK--AVSECCL--YDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCI  267 (289)
Q Consensus       192 ~~~~~~~~Gw~~~pv~~~l~~~~g~~--~~~~~~l--~~~DGWmEielGEF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV  267 (289)
                          +++|||+..|++++++.++++.  ..+.+.+  .+.|||||||+|||+|+++ +++||+|+|+|+++++||+||||
T Consensus        72 ----~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~~~wK~GLiv  146 (154)
T PF14299_consen   72 ----DDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDSGHWKGGLIV  146 (154)
T ss_pred             ----CCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecCCcccCeEEE
Confidence                7899999999999999998876  2233333  3579999999999999875 78999999999999999999999


Q ss_pred             EEEEEEec
Q 022971          268 DSVLIYPS  275 (289)
Q Consensus       268 ~GIeIRPk  275 (289)
                      +|||||||
T Consensus       147 ~GieIRPK  154 (154)
T PF14299_consen  147 EGIEIRPK  154 (154)
T ss_pred             EEEEEecC
Confidence            99999998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.55  E-value=3.6e-08  Score=68.01  Aligned_cols=44  Identities=25%  Similarity=0.609  Sum_probs=39.8

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhccc
Q 022971           22 LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK   65 (289)
Q Consensus        22 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~f   65 (289)
                      +.+||+|.+..|+++++|.|.++++.||+.|+.++.++.+|.++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~   44 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL   44 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence            57899999999999999999999999999999999999999875

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.17  E-value=3.1e-07  Score=63.03  Aligned_cols=45  Identities=29%  Similarity=0.627  Sum_probs=39.0

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhccc
Q 022971           21 SLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK   65 (289)
Q Consensus        21 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~f   65 (289)
                      .|.+||++++..|++++++.|.++++.||+.|+.+++++..|.++
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            357899999999999999999999999999999999999999764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.16  E-value=1.7e-06  Score=56.82  Aligned_cols=40  Identities=18%  Similarity=0.482  Sum_probs=38.6

Q ss_pred             chhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcc
Q 022971           25 VPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWET   64 (289)
Q Consensus        25 LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~   64 (289)
                      ||++++..|+++.+|.|.+++++||+.|+.+.+.+.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=92.48  E-value=0.099  Score=42.41  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCCChhhhhhhccCCCCCCCcHHHHHHHhc
Q 022971           21 SLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLS   95 (289)
Q Consensus        21 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d~~~i~~~~~~~~~~~~SKKeLy~~Lc   95 (289)
                      .++++|-+.|.-||...+|....++-.-|+.+  +-++|.+|.+|+=.||..-.....+  ...-|-+++|.++.
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~--~~~~~Wr~~Y~~~~   73 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKP--KEPESWRELYEKLK   73 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccc--cccchHHHHHHHHH
Confidence            47899999999999999999999999999766  5679999999999999752222111  13358899999986

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=85.46  E-value=0.64  Score=44.26  Aligned_cols=79  Identities=19%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             CCCCCCCCchhHHHHHHHhcCC-hHHHHHHhhcchhhhccCCCchhhcccCCCChhh--hhhhccCCCCCCCcHHHHHHH
Q 022971           17 TSSPSLNDVPESCVSSIFMHLD-PPEICKLALLNKTFRGASSADFLWETKLPSNYKY--LVKKVLNESPQKLTKKEIYAR   93 (289)
Q Consensus        17 ~~~~~~~~LPe~cia~ils~ts-P~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d~~~--i~~~~~~~~~~~~SKKeLy~~   93 (289)
                      +.+..|-|||++|+-.||-+.+ -+|.--+|.|-+++..-.+.+-+|.+..-=.|.+  |-....-+.-...--|++|+.
T Consensus       197 ~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~  276 (332)
T KOG3926|consen  197 PAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ  276 (332)
T ss_pred             cCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH
Confidence            4678899999999999999865 8999999999999999999999999765533321  221111000011235789998


Q ss_pred             hc
Q 022971           94 LS   95 (289)
Q Consensus        94 Lc   95 (289)
                      |-
T Consensus       277 L~  278 (332)
T KOG3926|consen  277 LR  278 (332)
T ss_pred             HH
Confidence            85

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	9e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 40/237 (16%), Positives = 71/237 (29%), Gaps = 73/237 (30%)

Query: 22  LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK-------------LPS 68
           L +V     +  +   +    CK+ LL  T R     DFL                  P 
Sbjct: 250 LLNV---QNAKAWNAFNLS--CKI-LL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 69  NYKYLVKKVLNESPQKLTKKE-----------IYARLSQ-PNRFDNATKEIWLDKRSGKV 116
             K L+ K L+  PQ L  +E           I   +      +DN  K +  DK +  +
Sbjct: 302 EVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTII 359

Query: 117 CMSISA-----------------KSMKITGIDDRRYWNQIATEESR-----FHSVAYLQQ 154
             S++                   S  I  I     W  +   +        H  + +++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 155 TWWCEAIGELEFEFPQGTYSLFFRLQLGKASKRFG--RRICN----LEQVHGWDVKP 205
               E+   +         S++  L++ K    +   R I +     +     D+ P
Sbjct: 420 -QPKESTISI--------PSIYLELKV-KLENEYALHRSIVDHYNIPKTFDSDDLIP 466

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 43/234 (18%), Positives = 72/234 (30%), Gaps = 54/234 (23%)

Query: 24  DVPESCVSS-----IFMHLDPPEICKLALLNKTFR--GASSADFLWETKLPSNYKYLVKK 76
           D+P+S +S      I M      +     L  T             E  L  NYK+L+  
Sbjct: 40  DMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 77  VLNESPQKLTKKEIYARLSQPNRFDNATKEI----------------WLDK-R------- 112
           +  E  Q      +Y  + Q +R  N  +                   L + R       
Sbjct: 98  IKTEQRQPSMMTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 113 -----SGKVCMSISA-KSMKI-TGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELE 165
                SGK  +++    S K+   +D + +W  +    S    +  LQ+      I    
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNW 213

Query: 166 FEFPQGTYSLFFRLQLGKASKR---FGRRICN----LEQVHGWDVKPVR-FQLS 211
                 + ++  R+   +A  R     +   N    L  V   + K    F LS
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLS 265

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 45.5 bits (107), Expect = 9e-06
 Identities = 15/84 (17%), Positives = 28/84 (33%)

Query: 18  SSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKV 77
           ++ +L  +P      I   L P ++C+L   N  +        LW   L  +        
Sbjct: 1   AASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVD 60

Query: 78  LNESPQKLTKKEIYARLSQPNRFD 101
               P     K+  + ++    FD
Sbjct: 61  WKSLPDLEILKKPISEVTDGAFFD 84

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 18 SSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWET 64
             S + +P+  +  IF  L  PE+ K++ + K +   +S + LW+T
Sbjct: 5  PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 16 STSSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYK 71
          +    S + +P+  +  IF  L  PE+ K++ + K +   +S + LW+T   +   
Sbjct: 3  NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.66
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.25
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.61
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.53
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.15
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.03
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	90.87

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.66  E-value=1.1e-08  Score=71.06  Aligned_cols=48  Identities=27%  Similarity=0.424  Sum_probs=40.5

Q ss_pred             CCCCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhccc
Q 022971           18 SSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK   65 (289)
Q Consensus        18 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~f   65 (289)
                      ....+.+||+|++..|+++++|.|.+++++||+.|+.++.++.+|.++
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            356789999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.25  E-value=1.7e-07  Score=87.94  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             CCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCCChh---hhhhhccCCCC------------CC
Q 022971           20 PSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYK---YLVKKVLNESP------------QK   84 (289)
Q Consensus        20 ~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d~~---~i~~~~~~~~~------------~~   84 (289)
                      ..|++||.+++-+|+||++|.|+||+|+||+.+|..|+.+.+|..|+-.|+.   +|-..+.|...            .+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~   82 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF   82 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence            4578999999999999999999999999999999999999999999987754   45444333110            24


Q ss_pred             CcHHHHHHHhc
Q 022971           85 LTKKEIYARLS   95 (289)
Q Consensus        85 ~SKKeLy~~Lc   95 (289)
                      ...+.+|.+=|
T Consensus        83 ~~~~~~y~~~~   93 (312)
T 3l2o_B           83 FDYMAVYRMCC   93 (312)
T ss_dssp             CCHHHHHHHHC
T ss_pred             ccHHHHHHhcC
Confidence            56799999866

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.61  E-value=1.9e-05  Score=73.70  Aligned_cols=81  Identities=17%  Similarity=0.222  Sum_probs=60.8

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHH-HHhhcchhhhccCCCchhhcccCCCChhhhhhhccCCCCCCCcHHHHHHHhc-C
Q 022971           19 SPSLNDVPESCVSSIFMHLDPPEIC-KLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLS-Q   96 (289)
Q Consensus        19 ~~~~~~LPe~cia~ils~tsP~dac-r~a~vs~~fr~Aa~sD~vW~~fLP~d~~~i~~~~~~~~~~~~SKKeLy~~Lc-~   96 (289)
                      +..+..||+|.+..||+++.|+|.+ |+++||+.+|..++++.+|.+.+...  .+...... .+...+-|.+|+.-- .
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~-~~~~~~Wk~~y~~~~~g  124 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA-DEERDHWQQFYFLSKRR  124 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC------CCSCHHHHHHHHHHC
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc-CCCCCChhhhheheecc
Confidence            4678999999999999999999999 99999999999999999999887654  11111111 123456899998743 2


Q ss_pred             CccccC
Q 022971           97 PNRFDN  102 (289)
Q Consensus        97 pvlld~  102 (289)
                      -+||.|
T Consensus       125 RNLL~N  130 (297)
T 2e31_A          125 RNLLRN  130 (297)
T ss_dssp             CCCSSC
T ss_pred             cceeec
Confidence            466655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.53  E-value=2.8e-05  Score=72.14  Aligned_cols=48  Identities=17%  Similarity=0.345  Sum_probs=44.8

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccC
Q 022971           19 SPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKL   66 (289)
Q Consensus        19 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fL   66 (289)
                      .--|..||+|++..|++|++|.|.|++++||+.|+..++.+.+|.+++
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence            445889999999999999999999999999999999999999999775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.15  E-value=6e-05  Score=69.77  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=42.6

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCC-chhhcccC
Q 022971           21 SLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSA-DFLWETKL   66 (289)
Q Consensus        21 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~s-D~vW~~fL   66 (289)
                      -|..||+|++..|+||++|+|.|+++.||+.++..+++ +.+|.+++
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            36789999999999999999999999999999998887 89999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.03  E-value=6.8e-05  Score=69.56  Aligned_cols=48  Identities=21%  Similarity=0.458  Sum_probs=44.0

Q ss_pred             CCCCchhH----HHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCC
Q 022971           21 SLNDVPES----CVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPS   68 (289)
Q Consensus        21 ~~~~LPe~----cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~   68 (289)
                      -|..||+|    .+..|++|++|.|.|++++||+.|+..++.+.+|.+++-.
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~   61 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence            35689999    9999999999999999999999999999999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.66  E-value=0.00079  Score=60.37  Aligned_cols=48  Identities=27%  Similarity=0.424  Sum_probs=41.6

Q ss_pred             CCCCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhccc
Q 022971           18 SSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK   65 (289)
Q Consensus        18 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~f   65 (289)
                      +...+++||+|++..|+++++++|.++++.||+.++.++.+...|.++
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            456789999999999999999999999999999999998766667653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.42  E-value=0.035  Score=53.32  Aligned_cols=35  Identities=14%  Similarity=0.280  Sum_probs=29.3

Q ss_pred             CCCCchhHHHHHHHhcCC-hHHHHHHhhcchhhhcc
Q 022971           21 SLNDVPESCVSSIFMHLD-PPEICKLALLNKTFRGA   55 (289)
Q Consensus        21 ~~~~LPe~cia~ils~ts-P~dacr~a~vs~~fr~A   55 (289)
                      .+++||+|++.+|++|.+ ++|++++|.||+.++.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            578999999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=90.87  E-value=0.11  Score=49.92  Aligned_cols=33  Identities=9%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             CCchhHHHHHHHhcC-ChHHHHHHhhcchhhhcc
Q 022971           23 NDVPESCVSSIFMHL-DPPEICKLALLNKTFRGA   55 (289)
Q Consensus        23 ~~LPe~cia~ils~t-sP~dacr~a~vs~~fr~A   55 (289)
                      .+||++|+.+|++|. +++|+++++.||+.++.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            489999999999999 899999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.002

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 23 NDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLW 62
          + +P+  +  IF  L  PE+ K++ + K +   +S + LW
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 22 LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYL-----VKK 76
          ++ +P+     +   L+P ++ + A   + +R  +  + LW  K              +K
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK 78

Query: 77 VLNESPQKLTKKEIYAR 93
          V+         K  Y R
Sbjct: 79 VIKPGFIHSPWKSAYIR 95

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 22  LNDVPESCVSSIFMHLDPPEICKLALLNKTFRG-ASSADFLWETKLPSNYKYLVKKVLNE 80
           +  +P      IF +L   +I     +++ +      +  LW+  L S   ++  K  N 
Sbjct: 6   ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE-NFVSPKGFNS 64

Query: 81  SPQKLTKKEIYARLSQPNRFDNATKE-IWLDKR 112
              KL++K  Y +LSQ +R   +  E I++ K 
Sbjct: 65  LNLKLSQK--YPKLSQQDRLRLSFLENIFILKN 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.77
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.99
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.74

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.5e-09  Score=71.08  Aligned_cols=41  Identities=27%  Similarity=0.469  Sum_probs=39.8

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhh
Q 022971           22 LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLW   62 (289)
Q Consensus        22 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW   62 (289)
                      ++.||+|++..|+++++|+|.||+++||+.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            57899999999999999999999999999999999999998

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.2e-09  Score=80.78  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=55.3

Q ss_pred             CCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCCChhhh-----hhhccCCCCCCCcHHHHHHHh
Q 022971           20 PSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYL-----VKKVLNESPQKLTKKEIYARL   94 (289)
Q Consensus        20 ~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d~~~i-----~~~~~~~~~~~~SKKeLy~~L   94 (289)
                      --|..||.|++..|+++++|+|+|++|+||+.|+.++++|.+|.+.+-.++...     ......+.....+-|++|.+.
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~   96 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ   96 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHH
Confidence            357899999999999999999999999999999999999999987654333110     001011111334579999875

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=3.8e-07  Score=69.25  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=39.6

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCc-hhhccc
Q 022971           22 LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSAD-FLWETK   65 (289)
Q Consensus        22 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD-~vW~~f   65 (289)
                      |.+||+|.+..|+++++|.|.|++|.||+.|+..+++| .+|.+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            56899999999999999999999999999999877665 789864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.7e-06  Score=67.31  Aligned_cols=47  Identities=21%  Similarity=0.487  Sum_probs=42.5

Q ss_pred             CCCchh----HHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCC
Q 022971           22 LNDVPE----SCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPS   68 (289)
Q Consensus        22 ~~~LPe----~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~   68 (289)
                      |..||.    |.+..|+||++|.|.|++|+||+.|+..++++.+|.++.-.
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            456885    99999999999999999999999999999999999987643